Query 030712
Match_columns 173
No_of_seqs 122 out of 1208
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 5E-36 1.1E-40 211.2 17.0 138 31-168 1-138 (138)
2 cd00127 DSPc Dual specificity 100.0 3.6E-33 7.8E-38 196.5 16.8 137 30-166 1-139 (139)
3 KOG1718 Dual specificity phosp 100.0 2.9E-33 6.2E-38 196.4 15.0 144 29-172 15-158 (198)
4 PF00782 DSPc: Dual specificit 100.0 4.4E-32 9.6E-37 189.8 12.8 130 38-168 1-133 (133)
5 KOG1717 Dual specificity phosp 100.0 2.6E-31 5.5E-36 198.9 12.7 143 28-170 169-313 (343)
6 KOG1716 Dual specificity phosp 100.0 1.3E-29 2.7E-34 198.1 17.3 144 29-172 73-219 (285)
7 PRK12361 hypothetical protein; 100.0 6E-28 1.3E-32 203.8 19.8 142 27-169 91-237 (547)
8 PTZ00393 protein tyrosine phos 100.0 2.6E-28 5.7E-33 182.6 14.5 160 1-172 63-232 (241)
9 PTZ00242 protein tyrosine phos 99.9 2.2E-25 4.8E-30 161.2 16.2 141 29-171 9-160 (166)
10 KOG1719 Dual specificity phosp 99.9 3.7E-24 8E-29 148.6 12.5 138 33-170 27-171 (183)
11 KOG1720 Protein tyrosine phosp 99.9 7.5E-21 1.6E-25 138.5 14.4 120 50-171 88-211 (225)
12 COG2453 CDC14 Predicted protei 99.8 2.4E-17 5.2E-22 120.9 12.8 94 72-166 70-164 (180)
13 PF03162 Y_phosphatase2: Tyros 99.7 4.9E-18 1.1E-22 122.5 7.5 135 31-169 7-150 (164)
14 KOG2836 Protein tyrosine phosp 99.7 1.5E-16 3.2E-21 108.4 13.1 137 28-167 6-154 (173)
15 TIGR01244 conserved hypothetic 99.7 6.3E-16 1.4E-20 108.4 13.3 116 31-153 2-129 (135)
16 PF05706 CDKN3: Cyclin-depende 99.7 8.9E-17 1.9E-21 114.3 6.8 106 36-142 41-168 (168)
17 PF04273 DUF442: Putative phos 99.5 6.4E-14 1.4E-18 94.5 8.2 91 32-128 3-105 (110)
18 smart00404 PTPc_motif Protein 99.5 3.1E-13 6.8E-18 89.8 10.7 89 76-164 4-101 (105)
19 smart00012 PTPc_DSPc Protein t 99.5 3.1E-13 6.8E-18 89.8 10.7 89 76-164 4-101 (105)
20 PLN02727 NAD kinase 99.4 1.4E-12 3.1E-17 113.1 11.4 98 37-137 262-370 (986)
21 cd00047 PTPc Protein tyrosine 99.3 1.1E-11 2.4E-16 94.1 9.9 83 82-164 138-227 (231)
22 smart00194 PTPc Protein tyrosi 99.3 1.3E-11 2.7E-16 95.4 9.9 83 82-164 166-254 (258)
23 PF13350 Y_phosphatase3: Tyros 99.3 1.4E-11 3.1E-16 89.0 9.6 109 33-145 15-160 (164)
24 COG3453 Uncharacterized protei 99.3 1.4E-10 3E-15 77.8 11.3 111 32-149 4-126 (130)
25 KOG2283 Clathrin coat dissocia 99.2 4.7E-11 1E-15 97.7 7.0 139 29-168 26-173 (434)
26 COG5350 Predicted protein tyro 99.2 1.7E-10 3.7E-15 80.5 8.4 111 49-160 25-146 (172)
27 PRK15375 pathogenicity island 99.2 2.9E-10 6.3E-15 93.5 11.1 91 80-170 429-530 (535)
28 PHA02742 protein tyrosine phos 99.2 4.4E-10 9.5E-15 88.8 11.6 92 81-172 190-302 (303)
29 KOG1572 Predicted protein tyro 99.1 1.5E-09 3.4E-14 81.0 12.0 114 33-149 62-188 (249)
30 PHA02740 protein tyrosine phos 99.1 8.7E-10 1.9E-14 86.9 10.9 83 81-163 185-281 (298)
31 PHA02747 protein tyrosine phos 99.1 1.4E-09 3E-14 86.3 10.8 82 81-162 191-288 (312)
32 PHA02746 protein tyrosine phos 99.0 1.9E-09 4.1E-14 85.9 10.3 83 82-164 210-308 (323)
33 PF00102 Y_phosphatase: Protei 99.0 3.9E-09 8.4E-14 79.8 9.6 83 82-164 143-231 (235)
34 PHA02738 hypothetical protein; 99.0 4.2E-09 9.1E-14 83.8 10.1 82 81-162 186-286 (320)
35 PF04179 Init_tRNA_PT: Initiat 98.8 1.6E-07 3.5E-12 77.5 14.1 132 34-165 292-449 (451)
36 PF14566 PTPlike_phytase: Inos 98.8 1.8E-08 3.9E-13 71.7 6.5 59 72-132 90-148 (149)
37 COG5599 PTP2 Protein tyrosine 98.7 2.2E-08 4.8E-13 76.1 5.9 148 9-169 125-293 (302)
38 KOG0792 Protein tyrosine phosp 98.7 5.1E-08 1.1E-12 85.7 8.7 83 82-164 1036-1124(1144)
39 COG2365 Protein tyrosine/serin 98.7 5.1E-08 1.1E-12 75.0 7.6 119 38-156 55-184 (249)
40 KOG0790 Protein tyrosine phosp 98.7 3.2E-08 6.9E-13 80.0 6.2 115 48-162 372-513 (600)
41 KOG2386 mRNA capping enzyme, g 98.6 5.1E-08 1.1E-12 78.5 5.6 120 49-169 54-185 (393)
42 KOG0793 Protein tyrosine phosp 98.5 1.7E-07 3.8E-12 79.4 6.4 84 77-160 895-985 (1004)
43 KOG0791 Protein tyrosine phosp 98.4 5.3E-06 1.1E-10 65.9 10.9 98 75-172 253-357 (374)
44 KOG0789 Protein tyrosine phosp 98.3 4.3E-06 9.3E-11 68.6 8.5 55 107-161 298-358 (415)
45 KOG4228 Protein tyrosine phosp 97.9 1.6E-05 3.4E-10 70.9 5.6 107 48-156 670-783 (1087)
46 KOG4228 Protein tyrosine phosp 97.7 6.9E-05 1.5E-09 67.0 6.2 71 94-164 1002-1079(1087)
47 PF14671 DSPn: Dual specificit 97.3 0.0012 2.6E-08 46.4 6.3 67 83-150 39-112 (141)
48 KOG4471 Phosphatidylinositol 3 96.6 0.0053 1.1E-07 52.1 5.8 38 94-131 360-397 (717)
49 cd01518 RHOD_YceA Member of th 95.5 0.047 1E-06 35.7 5.3 29 106-137 59-87 (101)
50 PF06602 Myotub-related: Myotu 95.3 0.064 1.4E-06 43.5 6.4 26 106-131 229-254 (353)
51 KOG1089 Myotubularin-related p 94.6 0.078 1.7E-06 45.2 5.4 29 100-128 335-364 (573)
52 COG0607 PspE Rhodanese-related 94.5 0.095 2E-06 34.4 4.8 73 51-137 14-87 (110)
53 PLN02160 thiosulfate sulfurtra 93.9 0.086 1.9E-06 36.8 3.7 69 54-126 27-98 (136)
54 cd01522 RHOD_1 Member of the R 92.6 0.54 1.2E-05 31.6 5.9 74 57-136 15-89 (117)
55 cd01520 RHOD_YbbB Member of th 92.0 0.42 9.1E-06 32.7 4.9 30 105-136 83-112 (128)
56 PRK01415 hypothetical protein; 91.0 0.53 1.1E-05 36.3 4.9 29 106-137 169-197 (247)
57 cd01523 RHOD_Lact_B Member of 90.7 0.68 1.5E-05 30.0 4.7 29 106-137 59-87 (100)
58 cd01448 TST_Repeat_1 Thiosulfa 90.2 0.66 1.4E-05 31.2 4.4 30 106-137 77-106 (122)
59 PRK05320 rhodanese superfamily 89.8 0.68 1.5E-05 35.9 4.7 28 107-137 174-201 (257)
60 PRK00142 putative rhodanese-re 89.3 0.69 1.5E-05 37.0 4.5 28 107-137 170-197 (314)
61 COG1054 Predicted sulfurtransf 88.2 3 6.5E-05 33.0 7.2 88 34-132 105-194 (308)
62 TIGR03865 PQQ_CXXCW PQQ-depend 87.6 6.8 0.00015 28.0 8.4 30 106-137 114-143 (162)
63 cd01443 Cdc25_Acr2p Cdc25 enzy 87.0 3.2 6.9E-05 27.5 6.1 20 107-126 65-84 (113)
64 PF00581 Rhodanese: Rhodanese- 86.0 1.2 2.5E-05 29.0 3.5 72 54-128 10-86 (113)
65 cd01531 Acr2p Eukaryotic arsen 85.7 2.8 6.2E-05 27.7 5.3 21 107-127 61-81 (113)
66 KOG1530 Rhodanese-related sulf 85.3 1.2 2.7E-05 30.8 3.3 74 49-124 30-104 (136)
67 TIGR03642 cas_csx13 CRISPR-ass 85.0 4.8 0.0001 27.7 6.1 58 78-135 57-116 (124)
68 cd01519 RHOD_HSP67B2 Member of 84.6 0.97 2.1E-05 29.4 2.5 28 107-137 65-92 (106)
69 cd01533 4RHOD_Repeat_2 Member 83.7 3.7 7.9E-05 26.9 5.1 27 107-136 65-91 (109)
70 cd01527 RHOD_YgaP Member of th 83.6 0.96 2.1E-05 29.1 2.2 18 106-124 52-69 (99)
71 TIGR03167 tRNA_sel_U_synt tRNA 83.4 2.7 5.7E-05 33.6 4.9 20 107-126 73-92 (311)
72 PRK11784 tRNA 2-selenouridine 82.9 2.5 5.3E-05 34.3 4.6 20 107-126 87-106 (345)
73 PF03668 ATP_bind_2: P-loop AT 78.9 5.1 0.00011 31.6 5.0 17 110-126 244-260 (284)
74 PF03861 ANTAR: ANTAR domain; 77.1 5.4 0.00012 23.1 3.7 26 123-148 15-40 (56)
75 TIGR02981 phageshock_pspE phag 76.7 6.8 0.00015 25.7 4.5 27 107-136 57-83 (101)
76 PRK05569 flavodoxin; Provision 76.5 17 0.00037 24.9 6.8 113 51-170 25-140 (141)
77 PRK05416 glmZ(sRNA)-inactivati 75.8 6.8 0.00015 30.9 5.0 36 92-127 222-264 (288)
78 smart00450 RHOD Rhodanese Homo 75.6 9.5 0.0002 23.7 5.0 29 106-137 54-82 (100)
79 COG1660 Predicted P-loop-conta 73.8 7.8 0.00017 30.3 4.7 34 93-126 221-261 (286)
80 PRK05728 DNA polymerase III su 73.7 10 0.00022 26.6 5.0 26 93-118 14-39 (142)
81 cd01528 RHOD_2 Member of the R 73.7 8.8 0.00019 24.6 4.5 28 107-137 57-84 (101)
82 TIGR01550 DOC_P1 death-on-curi 73.6 9.7 0.00021 25.9 4.7 50 94-149 51-105 (121)
83 PRK00162 glpE thiosulfate sulf 73.0 9.1 0.0002 24.9 4.5 30 105-137 55-84 (108)
84 COG2927 HolC DNA polymerase II 71.6 7.5 0.00016 27.4 3.8 25 94-118 15-39 (144)
85 PRK07411 hypothetical protein; 71.6 4.7 0.0001 33.2 3.3 68 59-137 301-368 (390)
86 cd01532 4RHOD_Repeat_1 Member 71.6 8.4 0.00018 24.4 3.9 29 107-136 49-77 (92)
87 PF09623 Cas_NE0113: CRISPR-as 71.4 11 0.00024 28.6 5.0 56 80-135 82-138 (224)
88 PRK06646 DNA polymerase III su 71.0 13 0.00028 26.6 5.0 26 93-118 14-39 (154)
89 PRK10886 DnaA initiator-associ 70.0 17 0.00037 27.0 5.7 38 92-132 25-62 (196)
90 KOG0870 DNA polymerase epsilon 69.3 8.2 0.00018 27.8 3.6 75 97-173 16-102 (172)
91 cd01534 4RHOD_Repeat_3 Member 68.8 7.4 0.00016 24.7 3.2 28 107-137 55-82 (95)
92 TIGR00853 pts-lac PTS system, 68.3 5.2 0.00011 26.0 2.4 17 108-125 3-19 (95)
93 PF10302 DUF2407: DUF2407 ubiq 67.0 3.1 6.8E-05 27.3 1.1 11 108-118 85-95 (97)
94 PLN02449 ferrochelatase 66.2 20 0.00042 30.6 5.9 108 2-114 296-422 (485)
95 PRK10287 thiosulfate:cyanide s 66.2 14 0.0003 24.4 4.1 19 107-126 59-77 (104)
96 cd01444 GlpE_ST GlpE sulfurtra 66.0 12 0.00027 23.4 3.9 19 105-124 53-71 (96)
97 PF04364 DNA_pol3_chi: DNA pol 65.6 10 0.00022 26.4 3.5 25 94-118 15-39 (137)
98 cd01530 Cdc25 Cdc25 phosphatas 65.4 8.3 0.00018 26.0 3.0 25 106-132 66-91 (121)
99 cd05567 PTS_IIB_mannitol PTS_I 64.7 8.3 0.00018 24.4 2.8 16 109-124 1-16 (87)
100 cd01525 RHOD_Kc Member of the 64.5 12 0.00025 24.1 3.5 27 108-137 65-91 (105)
101 PRK11449 putative deoxyribonuc 64.4 22 0.00047 27.5 5.5 55 93-147 112-172 (258)
102 cd01529 4RHOD_Repeats Member o 62.8 9.5 0.00021 24.2 2.8 29 106-137 54-82 (96)
103 PF02673 BacA: Bacitracin resi 62.6 10 0.00022 29.5 3.4 26 116-143 159-184 (259)
104 TIGR02584 cas_NE0113 CRISPR-as 61.1 26 0.00057 26.3 5.1 46 92-137 101-146 (209)
105 PF09419 PGP_phosphatase: Mito 60.6 47 0.001 24.1 6.3 38 29-67 12-52 (168)
106 COG0084 TatD Mg-dependent DNas 59.7 20 0.00044 27.8 4.6 55 93-147 110-170 (256)
107 cd01447 Polysulfide_ST Polysul 59.7 13 0.00028 23.7 3.1 28 106-136 59-86 (103)
108 cd01526 RHOD_ThiF Member of th 59.7 12 0.00027 25.0 3.1 28 106-136 70-97 (122)
109 PF06134 RhaA: L-rhamnose isom 59.1 44 0.00096 27.6 6.5 61 112-173 324-417 (417)
110 PRK12554 undecaprenyl pyrophos 57.9 12 0.00025 29.5 3.0 25 117-143 166-190 (276)
111 PF12643 MazG-like: MazG-like 57.6 52 0.0011 21.6 5.8 53 121-173 41-98 (98)
112 KOG1004 Exosomal 3'-5' exoribo 57.4 28 0.0006 26.3 4.7 39 108-148 185-223 (230)
113 TIGR00753 undec_PP_bacA undeca 57.1 12 0.00027 29.0 3.0 25 117-143 160-184 (255)
114 PRK00281 undecaprenyl pyrophos 57.0 13 0.00028 29.1 3.1 25 117-143 164-188 (268)
115 PRK05772 translation initiatio 55.9 32 0.00069 28.2 5.3 12 107-118 166-177 (363)
116 PRK09590 celB cellobiose phosp 55.1 12 0.00026 24.8 2.3 14 109-122 2-15 (104)
117 smart00400 ZnF_CHCC zinc finge 54.6 16 0.00034 20.9 2.5 32 112-145 23-54 (55)
118 COG0369 CysJ Sulfite reductase 53.1 1.6E+02 0.0035 25.9 10.8 60 90-149 516-577 (587)
119 PF06415 iPGM_N: BPG-independe 52.4 17 0.00038 27.6 3.1 48 82-132 36-85 (223)
120 COG2179 Predicted hydrolase of 52.0 87 0.0019 22.9 6.4 62 47-126 18-80 (175)
121 PF02302 PTS_IIB: PTS system, 51.6 12 0.00026 23.4 1.9 16 110-125 1-16 (90)
122 PRK10499 PTS system N,N'-diace 51.1 38 0.00082 22.4 4.3 17 109-125 4-20 (106)
123 cd00158 RHOD Rhodanese Homolog 50.7 31 0.00066 20.9 3.7 25 106-132 48-72 (89)
124 COG3654 Doc Prophage maintenan 50.3 84 0.0018 21.9 7.5 71 93-169 53-129 (132)
125 PF13344 Hydrolase_6: Haloacid 50.2 68 0.0015 20.8 6.3 68 94-163 16-96 (101)
126 cd01521 RHOD_PspE2 Member of t 50.2 27 0.00059 22.8 3.5 30 105-136 61-91 (110)
127 TIGR00512 salvage_mtnA S-methy 49.9 42 0.00092 27.1 5.1 14 105-118 140-157 (331)
128 COG0276 HemH Protoheme ferro-l 48.9 44 0.00095 26.9 4.9 80 4-84 205-301 (320)
129 PRK06036 translation initiatio 47.3 45 0.00098 27.1 4.8 18 105-122 145-162 (339)
130 PRK13938 phosphoheptose isomer 46.5 68 0.0015 23.8 5.4 41 90-133 27-67 (196)
131 PF00762 Ferrochelatase: Ferro 46.1 24 0.00052 28.2 3.1 82 2-86 203-301 (316)
132 COG2230 Cfa Cyclopropane fatty 45.6 92 0.002 24.7 6.2 78 93-170 154-240 (283)
133 COG0794 GutQ Predicted sugar p 45.0 59 0.0013 24.4 4.8 23 108-133 39-61 (202)
134 PRK13352 thiamine biosynthesis 45.0 1.6E+02 0.0035 24.7 7.6 118 30-147 51-217 (431)
135 TIGR00190 thiC thiamine biosyn 44.4 1.7E+02 0.0037 24.5 7.7 108 40-147 67-214 (423)
136 COG2897 SseA Rhodanese-related 44.3 20 0.00042 28.4 2.3 15 105-119 231-245 (285)
137 PRK10310 PTS system galactitol 44.3 22 0.00047 23.0 2.2 17 110-126 4-20 (94)
138 COG1440 CelA Phosphotransferas 44.3 22 0.00048 23.5 2.2 60 109-171 2-71 (102)
139 TIGR00644 recJ single-stranded 44.1 48 0.001 28.6 4.8 50 87-136 33-83 (539)
140 PRK05720 mtnA methylthioribose 43.6 66 0.0014 26.2 5.3 15 105-119 144-158 (344)
141 smart00488 DEXDc2 DEAD-like he 43.0 78 0.0017 24.9 5.6 35 96-130 15-49 (289)
142 smart00489 DEXDc3 DEAD-like he 43.0 78 0.0017 24.9 5.6 35 96-130 15-49 (289)
143 TIGR01460 HAD-SF-IIA Haloacid 42.2 1.3E+02 0.0029 22.6 6.6 70 94-164 16-98 (236)
144 TIGR00640 acid_CoA_mut_C methy 41.8 85 0.0019 21.6 5.0 30 37-66 86-115 (132)
145 PRK07878 molybdopterin biosynt 41.6 36 0.00077 28.1 3.6 29 106-137 341-369 (392)
146 PRK09629 bifunctional thiosulf 41.6 50 0.0011 29.1 4.6 28 106-136 221-248 (610)
147 PF14532 Sigma54_activ_2: Sigm 41.5 83 0.0018 21.4 5.0 32 93-124 6-37 (138)
148 COG1968 BacA Undecaprenyl pyro 41.4 33 0.00071 26.9 3.1 25 117-143 165-189 (270)
149 COG0279 GmhA Phosphoheptose is 41.3 58 0.0013 23.7 4.1 31 91-124 24-54 (176)
150 PRK11493 sseA 3-mercaptopyruva 40.7 21 0.00045 27.9 2.0 29 106-137 229-257 (281)
151 cd05565 PTS_IIB_lactose PTS_II 40.5 23 0.00051 23.2 1.9 20 110-131 2-21 (99)
152 PLN02723 3-mercaptopyruvate su 40.0 35 0.00076 27.2 3.2 28 106-136 267-294 (320)
153 PF02571 CbiJ: Precorrin-6x re 39.8 22 0.00048 27.4 2.0 46 37-82 46-101 (249)
154 PRK05600 thiamine biosynthesis 39.7 29 0.00064 28.4 2.8 66 59-136 288-357 (370)
155 TIGR03217 4OH_2_O_val_ald 4-hy 39.7 1.8E+02 0.0039 23.5 7.3 73 50-124 121-204 (333)
156 PF03853 YjeF_N: YjeF-related 38.8 61 0.0013 23.2 4.1 42 96-137 11-54 (169)
157 COG1107 Archaea-specific RecJ- 38.8 1.7E+02 0.0038 25.8 7.1 75 91-166 326-405 (715)
158 cd01449 TST_Repeat_2 Thiosulfa 38.6 55 0.0012 21.3 3.6 28 107-137 77-104 (118)
159 PRK08334 translation initiatio 38.0 87 0.0019 25.7 5.2 12 107-119 160-171 (356)
160 PF12554 MOZART1: Mitotic-spin 37.8 78 0.0017 17.9 4.3 31 118-149 18-48 (48)
161 COG3707 AmiR Response regulato 37.8 40 0.00087 25.0 3.0 23 126-148 150-172 (194)
162 cd05564 PTS_IIB_chitobiose_lic 37.7 30 0.00064 22.4 2.1 13 110-122 1-13 (96)
163 PRK13936 phosphoheptose isomer 37.6 1.3E+02 0.0028 22.1 5.8 33 92-127 27-59 (197)
164 PRK10425 DNase TatD; Provision 37.5 1E+02 0.0022 23.8 5.4 28 94-121 107-134 (258)
165 cd07944 DRE_TIM_HOA_like 4-hyd 37.3 2E+02 0.0042 22.3 10.8 98 50-149 116-239 (266)
166 cd01524 RHOD_Pyr_redox Member 35.9 47 0.001 20.6 2.8 19 105-124 48-66 (90)
167 PRK10812 putative DNAse; Provi 35.8 1.2E+02 0.0026 23.5 5.5 28 94-121 110-137 (265)
168 PRK01269 tRNA s(4)U8 sulfurtra 34.8 63 0.0014 27.5 4.1 28 106-136 447-474 (482)
169 COG3564 Uncharacterized protei 34.2 68 0.0015 21.0 3.2 24 95-118 11-34 (116)
170 TIGR02613 mob_myst_B mobile my 33.4 47 0.001 24.3 2.8 28 110-137 119-147 (186)
171 PF12921 ATP13: Mitochondrial 33.3 1.3E+02 0.0028 20.5 4.8 36 136-172 66-104 (126)
172 PF01026 TatD_DNase: TatD rela 33.0 77 0.0017 24.2 4.1 32 91-122 107-138 (255)
173 PRK05568 flavodoxin; Provision 32.6 1.6E+02 0.0034 19.9 5.3 113 51-170 25-140 (142)
174 PRK08195 4-hyroxy-2-oxovalerat 32.6 2.4E+02 0.0053 22.8 7.0 73 50-124 122-205 (337)
175 cd05007 SIS_Etherase N-acetylm 32.4 82 0.0018 24.3 4.1 44 92-138 33-79 (257)
176 cd04765 HTH_MlrA-like_sg2 Heli 32.0 1.5E+02 0.0031 19.3 5.5 39 131-169 54-92 (99)
177 TIGR00274 N-acetylmuramic acid 31.7 2E+02 0.0044 22.7 6.3 46 94-139 43-88 (291)
178 PF13378 MR_MLE_C: Enolase C-t 31.6 1.5E+02 0.0032 19.2 5.0 28 94-122 32-59 (111)
179 cd00308 enolase_like Enolase-s 30.9 1.6E+02 0.0034 22.0 5.4 29 94-122 182-210 (229)
180 cd05566 PTS_IIB_galactitol PTS 30.8 62 0.0013 20.1 2.7 17 110-126 2-18 (89)
181 cd01720 Sm_D2 The eukaryotic S 30.6 70 0.0015 20.4 2.9 28 98-125 4-31 (87)
182 PF12668 DUF3791: Protein of u 30.5 1E+02 0.0023 18.0 3.5 25 125-149 6-30 (62)
183 PRK00414 gmhA phosphoheptose i 30.2 1.5E+02 0.0031 21.8 5.0 24 91-114 27-50 (192)
184 KOG0235 Phosphoglycerate mutas 30.0 1.3E+02 0.0028 22.8 4.7 49 89-143 133-185 (214)
185 PRK12570 N-acetylmuramic acid- 29.9 1.1E+02 0.0024 24.2 4.5 46 92-137 42-87 (296)
186 cd00133 PTS_IIB PTS_IIB: subun 29.8 57 0.0012 19.4 2.4 17 110-126 1-17 (84)
187 PRK11493 sseA 3-mercaptopyruva 29.7 1.2E+02 0.0026 23.6 4.7 30 106-137 85-114 (281)
188 TIGR00197 yjeF_nterm yjeF N-te 29.6 1.3E+02 0.0029 22.3 4.7 35 98-132 35-70 (205)
189 PF05402 PqqD: Coenzyme PQQ sy 29.5 1.2E+02 0.0026 17.6 5.4 50 119-172 15-64 (68)
190 PF12682 Flavodoxin_4: Flavodo 29.0 66 0.0014 22.8 2.9 43 72-120 73-115 (156)
191 PF10727 Rossmann-like: Rossma 29.0 48 0.001 22.8 2.1 28 94-121 81-109 (127)
192 PRK02947 hypothetical protein; 29.0 1.4E+02 0.003 22.8 4.9 32 92-126 24-55 (246)
193 COG0777 AccD Acetyl-CoA carbox 28.9 3E+02 0.0064 21.9 6.7 51 94-149 143-195 (294)
194 cd01535 4RHOD_Repeat_4 Member 28.9 1.4E+02 0.003 20.8 4.5 25 106-132 47-71 (145)
195 PF00733 Asn_synthase: Asparag 28.8 77 0.0017 23.6 3.4 31 98-128 7-37 (255)
196 PF01964 ThiC: ThiC family; I 28.5 1.5E+02 0.0033 24.8 5.1 109 39-147 65-213 (420)
197 TIGR00010 hydrolase, TatD fami 28.3 1.5E+02 0.0032 22.0 4.9 25 95-119 108-132 (252)
198 PF01904 DUF72: Protein of unk 28.3 2.6E+02 0.0057 21.1 9.1 69 49-117 135-213 (230)
199 PF01807 zf-CHC2: CHC2 zinc fi 28.1 71 0.0015 20.6 2.7 36 112-149 54-89 (97)
200 COG2089 SpsE Sialic acid synth 28.1 91 0.002 25.3 3.7 23 94-119 162-186 (347)
201 COG0696 GpmI Phosphoglyceromut 28.0 1E+02 0.0022 26.4 4.1 54 76-132 110-166 (509)
202 TIGR01748 rhaA L-rhamnose isom 27.9 2E+02 0.0044 24.0 5.7 37 136-173 378-414 (414)
203 cd01294 DHOase Dihydroorotase 27.7 1.6E+02 0.0034 23.5 5.1 54 96-149 114-183 (335)
204 cd03174 DRE_TIM_metallolyase D 27.5 2.7E+02 0.0059 21.0 10.3 97 50-149 122-246 (265)
205 PRK06242 flavodoxin; Provision 27.5 1.4E+02 0.0031 20.3 4.4 66 107-172 73-149 (150)
206 cd05563 PTS_IIB_ascorbate PTS_ 27.4 72 0.0016 19.7 2.6 17 110-126 1-17 (86)
207 PHA03338 US22 family homolog; 27.3 69 0.0015 25.5 2.8 38 113-150 161-199 (344)
208 PRK06371 translation initiatio 27.1 71 0.0015 25.9 3.0 22 98-119 127-148 (329)
209 PRK08762 molybdopterin biosynt 26.7 1.6E+02 0.0034 24.1 5.0 28 106-136 55-82 (376)
210 PF03102 NeuB: NeuB family; I 26.6 1E+02 0.0022 23.7 3.7 32 86-119 121-152 (241)
211 PF13147 Amidohydro_4: Amidohy 26.4 2.7E+02 0.0059 20.6 6.6 52 95-146 223-279 (304)
212 COG3414 SgaB Phosphotransferas 26.4 63 0.0014 20.9 2.2 19 109-127 2-20 (93)
213 PRK11391 etp phosphotyrosine-p 26.0 74 0.0016 22.2 2.6 20 109-128 3-22 (144)
214 COG0182 Predicted translation 25.8 49 0.0011 26.8 1.8 29 107-135 149-181 (346)
215 PRK01076 L-rhamnose isomerase; 25.8 2.2E+02 0.0048 23.8 5.6 36 137-173 383-418 (419)
216 PF06169 DUF982: Protein of un 24.9 1.7E+02 0.0038 17.9 4.0 33 137-170 19-51 (76)
217 PF13580 SIS_2: SIS domain; PD 24.6 2.1E+02 0.0045 19.6 4.7 32 92-126 19-50 (138)
218 PTZ00138 small nuclear ribonuc 24.6 84 0.0018 20.2 2.4 25 98-122 16-40 (89)
219 PF01503 PRA-PH: Phosphoribosy 24.5 1.5E+02 0.0032 18.4 3.6 22 127-148 61-82 (83)
220 PRK08335 translation initiatio 24.4 1E+02 0.0022 24.3 3.4 16 103-118 105-120 (275)
221 TIGR03573 WbuX N-acetyl sugar 23.9 1.7E+02 0.0036 23.7 4.6 39 116-156 284-322 (343)
222 KOG1529 Mercaptopyruvate sulfu 23.8 79 0.0017 25.0 2.6 30 102-131 230-259 (286)
223 TIGR01307 pgm_bpd_ind 2,3-bisp 23.7 1.5E+02 0.0033 25.6 4.5 54 76-132 107-163 (501)
224 KOG4513 Phosphoglycerate mutas 23.7 1.5E+02 0.0032 24.8 4.2 61 76-147 124-187 (531)
225 PRK05333 NAD-dependent deacety 23.5 68 0.0015 25.2 2.3 22 103-124 14-35 (285)
226 cd01906 proteasome_protease_Hs 23.5 1.3E+02 0.0028 21.3 3.6 35 114-148 128-162 (182)
227 PHA02540 61 DNA primase; Provi 23.5 2E+02 0.0043 23.4 4.9 37 110-149 53-90 (337)
228 PRK10126 tyrosine phosphatase; 23.4 80 0.0017 22.0 2.4 19 109-127 3-21 (147)
229 TIGR02094 more_P_ylases alpha- 23.3 98 0.0021 27.3 3.4 36 109-147 161-199 (601)
230 COG4050 Uncharacterized protei 23.3 1.3E+02 0.0027 20.7 3.2 75 72-149 57-141 (152)
231 PF09707 Cas_Cas2CT1978: CRISP 23.3 43 0.00094 21.4 0.9 18 29-46 19-36 (86)
232 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.2 3.6E+02 0.0078 20.9 10.4 116 50-169 125-268 (275)
233 PLN03049 pyridoxine (pyridoxam 23.2 2E+02 0.0044 24.4 5.1 28 108-136 59-87 (462)
234 cd00687 Terpene_cyclase_nonpla 22.8 1.7E+02 0.0036 22.8 4.4 21 128-148 233-253 (303)
235 TIGR01245 trpD anthranilate ph 22.8 2.5E+02 0.0054 22.6 5.4 61 106-169 97-165 (330)
236 PRK05441 murQ N-acetylmuramic 22.8 1.7E+02 0.0036 23.3 4.3 45 93-137 47-91 (299)
237 PF14555 UBA_4: UBA-like domai 22.7 1.4E+02 0.003 15.9 2.9 23 124-147 16-38 (43)
238 PRK05434 phosphoglyceromutase; 22.6 1.6E+02 0.0035 25.4 4.5 55 75-132 110-167 (507)
239 TIGR00524 eIF-2B_rel eIF-2B al 22.6 1E+02 0.0022 24.6 3.1 16 104-119 115-130 (303)
240 cd01310 TatD_DNAse TatD like p 22.4 1.6E+02 0.0035 21.8 4.1 22 97-118 110-131 (251)
241 KOG1905 Class IV sirtuins (SIR 22.4 1.2E+02 0.0025 24.5 3.3 35 90-124 37-71 (353)
242 PF00270 DEAD: DEAD/DEAH box h 22.4 2.6E+02 0.0057 19.0 5.2 25 107-131 13-37 (169)
243 PRK06934 flavodoxin; Provision 22.4 1.6E+02 0.0035 22.3 4.0 39 75-119 132-170 (221)
244 COG5495 Uncharacterized conser 22.3 90 0.0019 24.2 2.6 24 98-121 81-104 (289)
245 PLN03050 pyridoxine (pyridoxam 22.2 2.4E+02 0.0052 21.7 5.0 28 108-136 60-88 (246)
246 PRK15378 inositol phosphate ph 21.9 1.2E+02 0.0025 26.1 3.3 20 108-127 456-475 (564)
247 KOG3020 TatD-related DNase [Re 21.6 97 0.0021 24.7 2.8 26 94-119 159-185 (296)
248 cd01991 Asn_Synthase_B_C The C 21.4 1.5E+02 0.0033 22.4 3.9 30 98-127 5-34 (269)
249 PRK10565 putative carbohydrate 21.3 2.2E+02 0.0047 24.5 5.0 37 99-136 51-88 (508)
250 cd06199 SiR Cytochrome p450- l 21.3 4.5E+02 0.0097 21.3 8.0 56 94-149 293-350 (360)
251 PF00931 NB-ARC: NB-ARC domain 21.0 1.6E+02 0.0035 22.4 3.9 36 94-129 5-40 (287)
252 PHA02769 hypothetical protein; 20.7 2.6E+02 0.0057 19.0 4.3 39 132-172 73-111 (154)
253 PF00580 UvrD-helicase: UvrD/R 20.6 1.2E+02 0.0026 23.2 3.2 32 107-138 12-45 (315)
254 PF01451 LMWPc: Low molecular 20.5 1.2E+02 0.0027 20.5 2.9 16 111-126 1-16 (138)
255 PF03807 F420_oxidored: NADP o 20.5 1.7E+02 0.0038 18.1 3.4 23 94-118 74-96 (96)
256 PF12637 TSCPD: TSCPD domain; 20.4 93 0.002 20.1 2.1 18 132-149 51-68 (95)
257 PLN02444 HMP-P synthase 20.2 6.2E+02 0.013 22.5 7.3 108 40-147 227-372 (642)
258 PRK08057 cobalt-precorrin-6x r 20.2 66 0.0014 24.8 1.6 45 37-81 45-99 (248)
259 TIGR01502 B_methylAsp_ase meth 20.1 4.5E+02 0.0098 22.0 6.5 51 97-147 337-396 (408)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=5e-36 Score=211.15 Aligned_cols=138 Identities=44% Similarity=0.706 Sum_probs=130.1
Q ss_pred CeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCc
Q 030712 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGG 110 (173)
Q Consensus 31 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 110 (173)
|++|.|+||+|+.+++.+.+.+++.||++|||++.+.+.....+++|+++|+.|....++...+..+.++|+...++|++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGK 80 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCe
Confidence 78999999999999999999999999999999998876656788999999999977777777899999999999999999
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHH
Q 030712 111 VLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKS 168 (173)
Q Consensus 111 VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~ 168 (173)
|+|||.+|.||||+++++|||...|+++++|+++++.+||.+.||++|+++|.+|+++
T Consensus 81 VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 81 VLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred EEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999873
No 2
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=100.00 E-value=3.6e-33 Score=196.46 Aligned_cols=137 Identities=50% Similarity=0.778 Sum_probs=128.4
Q ss_pred CCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCC--CCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhC
Q 030712 30 VPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAP--AHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ 107 (173)
Q Consensus 30 ~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~--~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~ 107 (173)
.+++|.|+||+|+.+++.+.+.|+..||++||||+.+.+. ....+++|+++|+.|.+.+.....++.++++|....++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999988764 34788999999999998777888899999999999999
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 030712 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELE 166 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~ 166 (173)
+++|+|||.+|.|||++++++|+|...++++++|++++|+.||.+.||++|+++|.+|+
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=2.9e-33 Score=196.43 Aligned_cols=144 Identities=38% Similarity=0.500 Sum_probs=137.4
Q ss_pred CCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCC
Q 030712 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQR 108 (173)
Q Consensus 29 ~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~ 108 (173)
...++|++.||+|+-..+.+...+++.||+.|||.+.+.+...-.++.|..+|+.|.+...+-++|+.+.+.|+.....|
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~g 94 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRG 94 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcC
Confidence 45679999999998778889999999999999999999888778999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhccC
Q 030712 109 GGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
|++||||.+|++||+++|+||||+..+|++.||+..++++||.++||.+||+||..||.+|.|+
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 4
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=100.00 E-value=4.4e-32 Score=189.75 Aligned_cols=130 Identities=43% Similarity=0.655 Sum_probs=122.3
Q ss_pred eEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC---CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEE
Q 030712 38 LFLGSIGAASNKDALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVH 114 (173)
Q Consensus 38 l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~---~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 114 (173)
||+|+.+.+. ...++..||++|||++.+.+.. ...+++++++|+.|....+....++.++++|+++.++|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999999987652 47889999999999777777788999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHH
Q 030712 115 CFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKS 168 (173)
Q Consensus 115 C~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~ 168 (173)
|.+|.||||+++++|||...++++++|+++++..||.+.||++|.++|.+|+++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999975
No 5
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=2.6e-31 Score=198.89 Aligned_cols=143 Identities=43% Similarity=0.698 Sum_probs=135.6
Q ss_pred CCCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCCC--CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHH
Q 030712 28 DRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH--PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (173)
Q Consensus 28 ~~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~~--~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~ 105 (173)
..+|.||+|+||+|+..+..+.+.|+++||++|||++...+..| ...+.|..||+.|.-.+.+...|++++.||.++.
T Consensus 169 a~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeAr 248 (343)
T KOG1717|consen 169 ASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEAR 248 (343)
T ss_pred cCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhh
Confidence 36788999999999999999999999999999999999887776 5667899999999999999999999999999999
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhc
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~ 170 (173)
.+++.|||||-+|++||.+|++||||....+++.+|+++|+.++.++.||-+|+.||..|++.|-
T Consensus 249 sk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 249 SKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred ccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999763
No 6
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=1.3e-29 Score=198.09 Aligned_cols=144 Identities=48% Similarity=0.673 Sum_probs=136.6
Q ss_pred CCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC--C-CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHH
Q 030712 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA--H-PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (173)
Q Consensus 29 ~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~--~-~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~ 105 (173)
..+++|.|+||+|+...+.+...++..||++|+|+..+.+.. . ..+++|+++|+.|.+..++...|+.+++||+.+.
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~ 152 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR 152 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999987764 2 3489999999999999999999999999999999
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhccC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
..+++|||||.+|++||+++++||||+..|+++++|+++|+.+||.+.||.+|+.||.+|++.+.++
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~ 219 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKK 219 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998775
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.96 E-value=6e-28 Score=203.78 Aligned_cols=142 Identities=27% Similarity=0.403 Sum_probs=127.8
Q ss_pred CCCCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCC----CCCCCeEEEEEeeecCCCCChHHHHHHHHHHHH
Q 030712 27 EDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAP----AHPNDFVYKVIGVADKEDTNLSQYFDECISFID 102 (173)
Q Consensus 27 ~~~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~----~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~ 102 (173)
+.+.+++|.|+||+|+.+.+.+.+.|++.||++|||++.+.+. ....+++|+++|+.|...+... .+++++++|+
T Consensus 91 ~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~-~l~~a~~~i~ 169 (547)
T PRK12361 91 SVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLA-QLNQAINWIH 169 (547)
T ss_pred CCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHH-HHHHHHHHHH
Confidence 3477889999999999999999999999999999999976543 2357789999999998777665 4999999999
Q ss_pred HHHhCCCcEEEEcCCCCChHHHHHHHHHHhh-cCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHh
Q 030712 103 EAKRQRGGVLVHCFAGRSRSVTIVVAYLMKK-HGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (173)
Q Consensus 103 ~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~-~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l 169 (173)
+..+++++|||||.+|.|||+++++||||.. .++++++|+++||+.||.+.||+.+++.|.+|.+..
T Consensus 170 ~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 170 RQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999976 589999999999999999999999999999998753
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=2.6e-28 Score=182.62 Aligned_cols=160 Identities=19% Similarity=0.287 Sum_probs=133.5
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhcccCCCCCeeccCC---eEecCcccCC----CHHHHHhCCCcEEEEcCCCCCCC---
Q 030712 1 MDQMDNAYRNQIAAILRVLNLTTCLREDRVPFEIEQG---LFLGSIGAAS----NKDALKSRNITHILTVANALAPA--- 70 (173)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~---l~~G~~~~~~----~~~~l~~~gi~~vi~l~~~~~~~--- 70 (173)
||+|...++.+++++...+ ++|++|..+ +.+-..|... .++.|+..||+.|+++++.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~---------~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~ 133 (241)
T PTZ00393 63 MDSYLGNINYNMDYLNPVL---------NHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEI 133 (241)
T ss_pred HHHHhccccccccccchhc---------ccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence 5777777777777777775 677777766 4555555543 34789999999999998765433
Q ss_pred CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCC
Q 030712 71 HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRP 150 (173)
Q Consensus 71 ~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp 150 (173)
...|++++++|++|...|+... ++.++++++..+..|++|+|||.+|.||||+++++||+. .|+++++|+++||..||
T Consensus 134 ~~~GI~~~~lpipDg~aPs~~~-i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RP 211 (241)
T PTZ00393 134 TSAGINVHELIFPDGDAPTVDI-VSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRK 211 (241)
T ss_pred HHcCCeEEEeecCCCCCCCHHH-HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCC
Confidence 2779999999999988887654 888999999888899999999999999999999999998 69999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHHhccC
Q 030712 151 QAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 151 ~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
.+ ++..++++|.+|+++.++|
T Consensus 212 gA-In~~Q~~fL~~y~~~~~k~ 232 (241)
T PTZ00393 212 GA-INKRQLQFLKAYKKKKKKK 232 (241)
T ss_pred CC-CCHHHHHHHHHHHHhcccc
Confidence 87 5889999999999987654
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.94 E-value=2.2e-25 Score=161.21 Aligned_cols=141 Identities=21% Similarity=0.243 Sum_probs=117.8
Q ss_pred CCCeeccCCeEecCcccCC----CHHHHHhCCCcEEEEcCCCCCCC--C-CCCeEEEEEeeecCCCCChHHHHHHHHHHH
Q 030712 29 RVPFEIEQGLFLGSIGAAS----NKDALKSRNITHILTVANALAPA--H-PNDFVYKVIGVADKEDTNLSQYFDECISFI 101 (173)
Q Consensus 29 ~~~~~I~~~l~~G~~~~~~----~~~~l~~~gi~~vi~l~~~~~~~--~-~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i 101 (173)
..-+-+.+.+..-..|... +.+.|++.||++|++++.+...+ + ..++.++++|+.|...|+... +..+++++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~-i~~~~~~i 87 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAV-IDNWLRLL 87 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHH-HHHHHHHH
Confidence 4456677887777777664 34789999999999998764332 1 568999999998887776654 77888888
Q ss_pred HHHHhC----CCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhcc
Q 030712 102 DEAKRQ----RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQG 171 (173)
Q Consensus 102 ~~~~~~----~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~ 171 (173)
.+.+.. |++|+|||.+|.||||+++++|||...++++++|+..++.+||.+ +++.++++|.+|.+.+++
T Consensus 88 ~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 88 DQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKA 160 (166)
T ss_pred HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhcc
Confidence 887754 899999999999999999999999998899999999999999976 478999999999988765
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.92 E-value=3.7e-24 Score=148.61 Aligned_cols=138 Identities=25% Similarity=0.364 Sum_probs=122.2
Q ss_pred eccCCeEecCcccCC-CHHHHHhCCCcEEEEcCCCCCCCC------CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHH
Q 030712 33 EIEQGLFLGSIGAAS-NKDALKSRNITHILTVANALAPAH------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (173)
Q Consensus 33 ~I~~~l~~G~~~~~~-~~~~l~~~gi~~vi~l~~~~~~~~------~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~ 105 (173)
.+.+.+.+|..+..+ +.+.++..|+..|+.|+++.+... ..|++++.+|..|....+....+..+++||....
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 788888888877654 667888999999999998876542 7889999999999864444444999999999999
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhc
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~ 170 (173)
..|+.|+|||.+|.+||++++++|||...+|++++|++++|.+||.+...+.+++.|.+|.+.+-
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIV 171 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988653
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.87 E-value=7.5e-21 Score=138.46 Aligned_cols=120 Identities=25% Similarity=0.357 Sum_probs=106.3
Q ss_pred HHHHhCCCcEEEEcCCCCCCC---CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 030712 50 DALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 50 ~~l~~~gi~~vi~l~~~~~~~---~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (173)
..++...+++++.+.....++ ...|+.++++|+.|...|+... +.++++.++.+.+ +++|.|||.+|.||||+++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 356678899999998876544 3888999999999999988776 8888999998888 8899999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHH-Hhcc
Q 030712 127 VAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEK-SLQG 171 (173)
Q Consensus 127 ~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~-~l~~ 171 (173)
+||||+..|+++.+|++.+|..||++...+.+...+.++.. .+.+
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~~~ 211 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWLAG 211 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988876 4443
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.75 E-value=2.4e-17 Score=120.91 Aligned_cols=94 Identities=30% Similarity=0.378 Sum_probs=77.8
Q ss_pred CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcC-CCHHHHHHHHHhhCC
Q 030712 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHG-MSLSQAMGHVKSRRP 150 (173)
Q Consensus 72 ~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~-~~~~~A~~~vr~~rp 150 (173)
+.+..+.++|+.|...++... ++.++++|....++|++|+|||.+|.||||++++||||...+ ...++++.+++..||
T Consensus 70 ~~~~~~~~~~~~D~~~p~~~~-l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDLED-LDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcHHH-HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 788899999999999999865 999999999999999999999999999999999999999854 667777888888887
Q ss_pred CCCCCHhHHHHHHHHH
Q 030712 151 QAAPNSGFLLQLQELE 166 (173)
Q Consensus 151 ~~~~~~~~~~~L~~~~ 166 (173)
.....+.+.....+..
T Consensus 149 ~~v~~~~q~~~~~e~~ 164 (180)
T COG2453 149 GAVVTEIQHLFELEQE 164 (180)
T ss_pred cccccHHHHHHHHHHH
Confidence 5444444444444433
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.74 E-value=4.9e-18 Score=122.53 Aligned_cols=135 Identities=17% Similarity=0.170 Sum_probs=85.4
Q ss_pred CeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC----C--CCCeEEEEEeeecCCC---CChHHHHHHHHHHH
Q 030712 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--PNDFVYKVIGVADKED---TNLSQYFDECISFI 101 (173)
Q Consensus 31 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~----~--~~~~~~~~~p~~d~~~---~~~~~~~~~~~~~i 101 (173)
-..|.++||.|++|...++.+|+.+|+++||+|+.+.... + ..+++++++++..... +...+.+.++++.|
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999875433 1 7889999999975543 12233455566655
Q ss_pred HHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHh
Q 030712 102 DEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (173)
Q Consensus 102 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l 169 (173)
.+. .+.||||||..|.+|||+|+++|- +..||+...|++..+..-. ...+..-.++++.|+..+
T Consensus 87 ld~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 87 LDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVEL 150 (164)
T ss_dssp H-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG-GG--HHHHHHHHT-----
T ss_pred hCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcce
Confidence 443 457999999999999999999999 6789999999999987653 355666777777776544
No 14
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-16 Score=108.39 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=107.6
Q ss_pred CCCCeeccCC---eEecCcccCCC----HHHHHhCCCcEEEEcCCCCCCC---CCCCeEEEEEeeecCCCCChHHHHHHH
Q 030712 28 DRVPFEIEQG---LFLGSIGAASN----KDALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDEC 97 (173)
Q Consensus 28 ~~~~~~I~~~---l~~G~~~~~~~----~~~l~~~gi~~vi~l~~~~~~~---~~~~~~~~~~p~~d~~~~~~~~~~~~~ 97 (173)
++.|.+|.=. ..+...|+... .+.|+.+|+++|+.+|+..... ..+|++.+.+|++|...++..- .++.
T Consensus 6 rPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qv-v~~w 84 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQV-VDDW 84 (173)
T ss_pred CCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHH-HHHH
Confidence 4667777644 45555555443 3679999999999999877655 3889999999998876665443 6666
Q ss_pred HHHHHHHHh--CCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHH
Q 030712 98 ISFIDEAKR--QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEK 167 (173)
Q Consensus 98 ~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~ 167 (173)
+.++..... .|+.|.|||.+|.||++++++..|+.. ||.+++|++++|++| ....|..+..+|..|..
T Consensus 85 ~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~kr-rga~n~kql~~lekyrp 154 (173)
T KOG2836|consen 85 LSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKR-RGAINSKQLLYLEKYRP 154 (173)
T ss_pred HHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHh-hccccHHHHHHHHHhCc
Confidence 666655554 378999999999999999999999986 999999999999999 45778888888888865
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.70 E-value=6.3e-16 Score=108.37 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=90.0
Q ss_pred CeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCCC------------CCCeEEEEEeeecCCCCChHHHHHHHH
Q 030712 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH------------PNDFVYKVIGVADKEDTNLSQYFDECI 98 (173)
Q Consensus 31 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~~------------~~~~~~~~~p~~d~~~~~~~~~~~~~~ 98 (173)
..+|.+.+|++++++..+.+.|.++||++|||++.+.+... ..|+.|+++|+..... +. ..+..+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~~v~~f~ 79 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-DDVETFR 79 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-HHHHHHH
Confidence 35899999999999999999999999999999987643221 2689999999875432 22 2244555
Q ss_pred HHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCC
Q 030712 99 SFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAA 153 (173)
Q Consensus 99 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~ 153 (173)
++++ ...+|||+||++|. ||+++.+.++.. .|++.+++++..+...-...
T Consensus 80 ~~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 80 AAIG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 5554 34579999999999 999988777766 68999999999988765443
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.68 E-value=8.9e-17 Score=114.35 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=70.4
Q ss_pred CCeEecCcccC----------CCHHHHHhCCCcEEEEcCCCCCCC-----------CCCCeEEEEEeeecCCCCChHHHH
Q 030712 36 QGLFLGSIGAA----------SNKDALKSRNITHILTVANALAPA-----------HPNDFVYKVIGVADKEDTNLSQYF 94 (173)
Q Consensus 36 ~~l~~G~~~~~----------~~~~~l~~~gi~~vi~l~~~~~~~-----------~~~~~~~~~~p~~d~~~~~~~~~~ 94 (173)
..|.++..|-. .|.+.|++.|++.|+.+....+.. -..|+.|+|+||.|...|+... +
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-A 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-H
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-H
Confidence 34777776663 356789999999999998764322 1688999999999999998766 4
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhc-CCCHHHHH
Q 030712 95 DECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKH-GMSLSQAM 142 (173)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~-~~~~~~A~ 142 (173)
..+.+.+...+++|++|+|||.+|.||||++|+++|+... ++++++|+
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 4677888889999999999999999999999999999864 48999885
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.52 E-value=6.4e-14 Score=94.48 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=58.4
Q ss_pred eeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC------------CCCCeEEEEEeeecCCCCChHHHHHHHHH
Q 030712 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA------------HPNDFVYKVIGVADKEDTNLSQYFDECIS 99 (173)
Q Consensus 32 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~------------~~~~~~~~~~p~~d~~~~~~~~~~~~~~~ 99 (173)
.+|.+.++++++++..+++.|.+.|+++|||++.+.+.+ ...|+.|+++|+.... .. ...+..+.+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-~~-~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-IT-EEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-CC-HHHHHHHHH
Confidence 579999999999999999999999999999998765432 1688999999998533 22 233555555
Q ss_pred HHHHHHhCCCcEEEEcCCCCChHHHHHHH
Q 030712 100 FIDEAKRQRGGVLVHCFAGRSRSVTIVVA 128 (173)
Q Consensus 100 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 128 (173)
.++. .++|||+||..|. ||+++.+.
T Consensus 81 ~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 81 ALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 5443 4679999999996 99776543
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.51 E-value=3.1e-13 Score=89.82 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=69.9
Q ss_pred EEEEEeeecCCCCChHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCChHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 030712 76 VYKVIGVADKEDTNLSQYFDECISFIDEAKR---QRGGVLVHCFAGRSRSVTIVVAYLMKKH------GMSLSQAMGHVK 146 (173)
Q Consensus 76 ~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~------~~~~~~A~~~vr 146 (173)
.+++.+++|...|.....+.+++..+....+ .+++|+|||.+|.||||++++++++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4555667776666665567778888877765 2679999999999999999999999653 368999999999
Q ss_pred hhCCCCCCCHhHHHHHHH
Q 030712 147 SRRPQAAPNSGFLLQLQE 164 (173)
Q Consensus 147 ~~rp~~~~~~~~~~~L~~ 164 (173)
..||+...+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999998887766665543
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.51 E-value=3.1e-13 Score=89.82 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=69.9
Q ss_pred EEEEEeeecCCCCChHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCChHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 030712 76 VYKVIGVADKEDTNLSQYFDECISFIDEAKR---QRGGVLVHCFAGRSRSVTIVVAYLMKKH------GMSLSQAMGHVK 146 (173)
Q Consensus 76 ~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~------~~~~~~A~~~vr 146 (173)
.+++.+++|...|.....+.+++..+....+ .+++|+|||.+|.||||++++++++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4555667776666665567778888877765 2679999999999999999999999653 368999999999
Q ss_pred hhCCCCCCCHhHHHHHHH
Q 030712 147 SRRPQAAPNSGFLLQLQE 164 (173)
Q Consensus 147 ~~rp~~~~~~~~~~~L~~ 164 (173)
..||+...+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999998887766665543
No 20
>PLN02727 NAD kinase
Probab=99.42 E-value=1.4e-12 Score=113.09 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=80.4
Q ss_pred CeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC--C---------CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHH
Q 030712 37 GLFLGSIGAASNKDALKSRNITHILTVANALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (173)
Q Consensus 37 ~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~--~---------~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~ 105 (173)
.+|++++++..+++.+.+.||++|||++.+.+.. + ..|++|+++|+.+...+..+. ++.+.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~Eq-Ve~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQ-VEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHH-HHHHHHHHHh--
Confidence 4799999999999999999999999998876522 2 478999999998766665555 6677777744
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..++|||+||..|.+|+|+++++|+.+.-+-.
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34679999999999999999999999876654
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.33 E-value=1.1e-11 Score=94.15 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=64.6
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCChHHHHHHHHHHhh-----cCCCHHHHHHHHHhhCCCCCC
Q 030712 82 VADKEDTNLSQYFDECISFIDEAKR--QRGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAP 154 (173)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~~~~~A~~~vr~~rp~~~~ 154 (173)
+.|...+.....+..++..+..... .++||+|||.+|.||||++|+++++.. ..+++.+++..+|++||++..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 4555555554446666666666543 367999999999999999999987653 258999999999999999999
Q ss_pred CHhHHHHHHH
Q 030712 155 NSGFLLQLQE 164 (173)
Q Consensus 155 ~~~~~~~L~~ 164 (173)
+..+..++..
T Consensus 218 ~~~Qy~f~~~ 227 (231)
T cd00047 218 TEEQYIFLYR 227 (231)
T ss_pred CHHHHHHHHH
Confidence 8888777654
No 22
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.32 E-value=1.3e-11 Score=95.40 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=63.8
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHHHHHHHHHhh-----cCCCHHHHHHHHHhhCCCCCCC
Q 030712 82 VADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPN 155 (173)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~~~~~A~~~vr~~rp~~~~~ 155 (173)
+.|...|.....+.+++..+...... ++||+|||.+|.||||++|+++++.. ..+++.+++..+|.+||++..+
T Consensus 166 W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~ 245 (258)
T smart00194 166 WPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQT 245 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCC
Confidence 44555554434466666666655443 67999999999999999999988743 3589999999999999999999
Q ss_pred HhHHHHHHH
Q 030712 156 SGFLLQLQE 164 (173)
Q Consensus 156 ~~~~~~L~~ 164 (173)
..+...+..
T Consensus 246 ~~Qy~f~~~ 254 (258)
T smart00194 246 EEQYIFLYR 254 (258)
T ss_pred HHHHHHHHH
Confidence 888877654
No 23
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.32 E-value=1.4e-11 Score=88.99 Aligned_cols=109 Identities=17% Similarity=0.314 Sum_probs=59.7
Q ss_pred eccCC-eEecCcccCC---CHHHHHhCCCcEEEEcCCCCC-----CCCCCCeEEEEEeeecCCCCC---h----------
Q 030712 33 EIEQG-LFLGSIGAAS---NKDALKSRNITHILTVANALA-----PAHPNDFVYKVIGVADKEDTN---L---------- 90 (173)
Q Consensus 33 ~I~~~-l~~G~~~~~~---~~~~l~~~gi~~vi~l~~~~~-----~~~~~~~~~~~~p~~d~~~~~---~---------- 90 (173)
.|-++ ||.++.++.- +.+.|..+||++||||+.+.+ .+...+++++++|+.+..... +
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 46666 8999987744 556888999999999987643 335779999999987554331 1
Q ss_pred ---------------HHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHH
Q 030712 91 ---------------SQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHV 145 (173)
Q Consensus 91 ---------------~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~v 145 (173)
...+..+++.+ ....+|||+||++|++|||.+++..|.. .|++.++++.-.
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l---~~~~~p~l~HC~aGKDRTG~~~alll~~-lGV~~~~I~~DY 160 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELL---ADAPGPVLFHCTAGKDRTGVVAALLLSL-LGVPDEDIIADY 160 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHH---H-TT--EEEE-SSSSSHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHh---ccCCCcEEEECCCCCccHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 01122223333 2244699999999999999988777665 599988876543
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=1.4e-10 Score=77.77 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=82.7
Q ss_pred eeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCCC------------CCCeEEEEEeeecCCCCChHHHHHHHHH
Q 030712 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH------------PNDFVYKVIGVADKEDTNLSQYFDECIS 99 (173)
Q Consensus 32 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~~------------~~~~~~~~~p~~d~~~~~~~~~~~~~~~ 99 (173)
.+|.+.+.++++++..|...++..|+++|||.+.+.+.+. ..|+.|.++|+...... ...++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT--~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGIT--EADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCC--HHHHHHHHH
Confidence 4789999999999999999999999999999988765541 67899999999743322 122444444
Q ss_pred HHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 100 FIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 100 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
.+.+ .++|||.||+.| .||..+-..-- ...||+.+++..+=++.-
T Consensus 82 Al~e---aegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~G 126 (130)
T COG3453 82 ALDE---AEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAAG 126 (130)
T ss_pred HHHH---hCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhhC
Confidence 4443 467999999999 48866544444 456899998887766543
No 25
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.19 E-value=4.7e-11 Score=97.72 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=102.7
Q ss_pred CCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCC-CCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhC
Q 030712 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALA-PAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ 107 (173)
Q Consensus 29 ~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~-~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~ 107 (173)
++|.+..+.+|..+..+....-.-+-.|-..|.||+.+.. ..-.-..+...++++|...|.+.. +..+++-+..|++.
T Consensus 26 sfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~ 104 (434)
T KOG2283|consen 26 SFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLEL-LCPFCKSMDNWLSE 104 (434)
T ss_pred eCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHH-HHHHHHCHHHHHhc
Confidence 5555555556665555543222222346778999996332 222333456668999999998887 88899999999975
Q ss_pred --CCcEEEEcCCCCChHHHHHHHHHHhhcCCC-HHHHHHHHHhhC---C--CCCCCHhHHHHHHHHHHH
Q 030712 108 --RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS-LSQAMGHVKSRR---P--QAAPNSGFLLQLQELEKS 168 (173)
Q Consensus 108 --~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~-~~~A~~~vr~~r---p--~~~~~~~~~~~L~~~~~~ 168 (173)
...|.|||.+|.+|||++++|||+...-.. .++|++++-++| . .....+.+++++..|...
T Consensus 105 d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 105 DPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred CccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 468999999999999999999999976554 999999999999 3 234566889999998873
No 26
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=80.53 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=79.8
Q ss_pred HHHHHhCCCcEEEEcCCCCCCC-CCCCe---EEEEEeeecCC------CCChHHHHHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 49 KDALKSRNITHILTVANALAPA-HPNDF---VYKVIGVADKE------DTNLSQYFDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 49 ~~~l~~~gi~~vi~l~~~~~~~-~~~~~---~~~~~p~~d~~------~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
.+.....|-++++++....... -+.++ +++.+-+.|.. ...-+.+.+.+++|+++|.+.. +++|||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~a-pllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFA-PLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCcccc-ceeeeeccc
Confidence 3455668899999997753322 12222 33444333332 2234567889999999997754 999999999
Q ss_pred CChHHHHHHH-HHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHH
Q 030712 119 RSRSVTIVVA-YLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLL 160 (173)
Q Consensus 119 ~~RS~~v~~a-yL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~ 160 (173)
+|||++++.. .|.....++..+..+.++..+|.+.||+..+.
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 9999876554 34455679999999999999999999997664
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.18 E-value=2.9e-10 Score=93.54 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=69.0
Q ss_pred EeeecCCCCChHHHHHHHHHHHHHHHhCC---------CcEEEEcCCCCChHHHHHHHHHHhhcC-CCHHHHHHHHHhhC
Q 030712 80 IGVADKEDTNLSQYFDECISFIDEAKRQR---------GGVLVHCFAGRSRSVTIVVAYLMKKHG-MSLSQAMGHVKSRR 149 (173)
Q Consensus 80 ~p~~d~~~~~~~~~~~~~~~~i~~~~~~~---------~~VlVHC~~G~~RS~~v~~ayL~~~~~-~~~~~A~~~vr~~r 149 (173)
..|+|...++....+..+.+.|......+ .+.+|||++|.||||++|+++++...+ .++++.+..+|..|
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qR 508 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSR 508 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcC
Confidence 34566655544444666777776653221 234799999999999999999987433 78999999999999
Q ss_pred CC-CCCCHhHHHHHHHHHHHhc
Q 030712 150 PQ-AAPNSGFLLQLQELEKSLQ 170 (173)
Q Consensus 150 p~-~~~~~~~~~~L~~~~~~l~ 170 (173)
++ +.-++.++..|.+.+..|.
T Consensus 509 ng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 509 NNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred CccccccHHHHHHHHHHHHHHh
Confidence 98 8888899999999887653
No 28
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.17 E-value=4.4e-10 Score=88.84 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=64.9
Q ss_pred eeecCCCCChHHHHHHHHHHHHHHHh------------CCCcEEEEcCCCCChHHHHHHHHHHhh-----cCCCHHHHHH
Q 030712 81 GVADKEDTNLSQYFDECISFIDEAKR------------QRGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMG 143 (173)
Q Consensus 81 p~~d~~~~~~~~~~~~~~~~i~~~~~------------~~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~~~~~A~~ 143 (173)
.|+|.+.|.....+-+++..+++... ..+||+|||++|.||||++|++..+.. ..+++.+++.
T Consensus 190 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~ 269 (303)
T PHA02742 190 DWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVR 269 (303)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34455555444445555555554321 136999999999999999998877742 3478999999
Q ss_pred HHHhhCCCCCCCHhHHH----HHHHHHHHhccC
Q 030712 144 HVKSRRPQAAPNSGFLL----QLQELEKSLQGR 172 (173)
Q Consensus 144 ~vr~~rp~~~~~~~~~~----~L~~~~~~l~~~ 172 (173)
.+|.+||++..+..+.. .|.+|-+.+..|
T Consensus 270 ~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~~~ 302 (303)
T PHA02742 270 DLRKQRHNCLSLPQQYIFCYFIVLIFAKLMADK 302 (303)
T ss_pred HHHhhcccccCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999888776554 566666666554
No 29
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.13 E-value=1.5e-09 Score=81.02 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=88.8
Q ss_pred eccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC----C--CCCeEEEEEeeecCC-------CCChHHHHHHHHH
Q 030712 33 EIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--PNDFVYKVIGVADKE-------DTNLSQYFDECIS 99 (173)
Q Consensus 33 ~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~----~--~~~~~~~~~p~~d~~-------~~~~~~~~~~~~~ 99 (173)
.+.++||.+++|...++.+|+..+.++||.|+.+..+. | ..++++.++-+.... .+.....+..++.
T Consensus 62 ~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~ 141 (249)
T KOG1572|consen 62 MVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALK 141 (249)
T ss_pred ccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHH
Confidence 57789999999999999999999999999999986433 2 788999999886443 2222344555555
Q ss_pred HHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 100 FIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 100 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
++.. ..+.|+|+||..|..|+|+|+.+.- +.++|++.-.++..+..-
T Consensus 142 ~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 142 VLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred HHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 5322 4578999999999999999998887 667899888887766554
No 30
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.12 E-value=8.7e-10 Score=86.86 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=59.4
Q ss_pred eeecCCCCChHHHHHHHHHHHHHHH---------hCCCcEEEEcCCCCChHHHHHHHHHHh-----hcCCCHHHHHHHHH
Q 030712 81 GVADKEDTNLSQYFDECISFIDEAK---------RQRGGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQAMGHVK 146 (173)
Q Consensus 81 p~~d~~~~~~~~~~~~~~~~i~~~~---------~~~~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~~~~~A~~~vr 146 (173)
.|+|.+.|.....+-+++..|++.. ...+||+|||++|.||||++|+...+. ...+++.+++..+|
T Consensus 185 ~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR 264 (298)
T PHA02740 185 AWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVR 264 (298)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4455555544444555555554322 124699999999999999999887764 33579999999999
Q ss_pred hhCCCCCCCHhHHHHHH
Q 030712 147 SRRPQAAPNSGFLLQLQ 163 (173)
Q Consensus 147 ~~rp~~~~~~~~~~~L~ 163 (173)
.+|++...+..+..++.
T Consensus 265 ~qR~~~Vqt~~QY~F~y 281 (298)
T PHA02740 265 QKKYGCMNCLDDYVFCY 281 (298)
T ss_pred hhCccccCCHHHHHHHH
Confidence 99999888877666543
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.08 E-value=1.4e-09 Score=86.31 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=60.0
Q ss_pred eeecCCCCChHHHHHHHHHHHHHHHhC-----------CCcEEEEcCCCCChHHHHHHHHHHh-----hcCCCHHHHHHH
Q 030712 81 GVADKEDTNLSQYFDECISFIDEAKRQ-----------RGGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQAMGH 144 (173)
Q Consensus 81 p~~d~~~~~~~~~~~~~~~~i~~~~~~-----------~~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~~~~~A~~~ 144 (173)
.|+|...|.....+.+++..++...+. .+||+|||++|.||||++|++..+. ...+++.+++..
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~ 270 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEK 270 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 455655555444455555555544321 2699999999999999999887543 345899999999
Q ss_pred HHhhCCCCCCCHhHHHHH
Q 030712 145 VKSRRPQAAPNSGFLLQL 162 (173)
Q Consensus 145 vr~~rp~~~~~~~~~~~L 162 (173)
+|.+|+++..+..+..++
T Consensus 271 lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 271 IREQRHAGIMNFDDYLFI 288 (312)
T ss_pred HHhccccccCCHHHHHHH
Confidence 999999988888766665
No 32
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.05 E-value=1.9e-09 Score=85.94 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=59.4
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHh--------C---CCcEEEEcCCCCChHHHHHHHHHHh-----hcCCCHHHHHHHH
Q 030712 82 VADKEDTNLSQYFDECISFIDEAKR--------Q---RGGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQAMGHV 145 (173)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~i~~~~~--------~---~~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~~~~~A~~~v 145 (173)
|+|.+.|.....+-+++..+++... . .+||+|||++|.||||++|+...+. ...+++.+++..+
T Consensus 210 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~l 289 (323)
T PHA02746 210 WPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKI 289 (323)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4454545444445555555554421 1 2699999999999999999876653 2358999999999
Q ss_pred HhhCCCCCCCHhHHHHHHH
Q 030712 146 KSRRPQAAPNSGFLLQLQE 164 (173)
Q Consensus 146 r~~rp~~~~~~~~~~~L~~ 164 (173)
|.+|+++..+..+..++.+
T Consensus 290 R~qR~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 290 RKQRHSSVFLPEQYAFCYK 308 (323)
T ss_pred HhcccccCCCHHHHHHHHH
Confidence 9999998888877665543
No 33
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.99 E-value=3.9e-09 Score=79.83 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=61.8
Q ss_pred eecCCCCChHHHHHHHHHHHHHHH-hCCCcEEEEcCCCCChHHHHHHHHHHhh-----cCCCHHHHHHHHHhhCCCCCCC
Q 030712 82 VADKEDTNLSQYFDECISFIDEAK-RQRGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPN 155 (173)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~~~~~A~~~vr~~rp~~~~~ 155 (173)
+.+...|.....+-.+++.+.... ..++||+|||.+|.||||+++++.++.. ...++.+++..+|+.||++..+
T Consensus 143 W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~ 222 (235)
T PF00102_consen 143 WPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQS 222 (235)
T ss_dssp SSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSS
T ss_pred ccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCC
Confidence 333333332333555666665555 2457999999999999999999988843 2479999999999999999999
Q ss_pred HhHHHHHHH
Q 030712 156 SGFLLQLQE 164 (173)
Q Consensus 156 ~~~~~~L~~ 164 (173)
..+..++..
T Consensus 223 ~~qy~f~~~ 231 (235)
T PF00102_consen 223 PEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 34
>PHA02738 hypothetical protein; Provisional
Probab=98.99 E-value=4.2e-09 Score=83.84 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=58.3
Q ss_pred eeecCCCCChHHHHHHHHHHHHHHHh--------------CCCcEEEEcCCCCChHHHHHHHHHHh-----hcCCCHHHH
Q 030712 81 GVADKEDTNLSQYFDECISFIDEAKR--------------QRGGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQA 141 (173)
Q Consensus 81 p~~d~~~~~~~~~~~~~~~~i~~~~~--------------~~~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~~~~~A 141 (173)
.|+|...|.....|-.++..|+.... ..+||+|||++|.||||++|+.-.+. ...+++.++
T Consensus 186 ~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~ 265 (320)
T PHA02738 186 AWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSI 265 (320)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHH
Confidence 34555555444445555555554321 13699999999999999988877653 234789999
Q ss_pred HHHHHhhCCCCCCCHhHHHHH
Q 030712 142 MGHVKSRRPQAAPNSGFLLQL 162 (173)
Q Consensus 142 ~~~vr~~rp~~~~~~~~~~~L 162 (173)
+..+|.+|+++..+..+..++
T Consensus 266 V~~lR~qR~~~vqt~~QY~F~ 286 (320)
T PHA02738 266 VSSIRNQRYYSLFIPFQYFFC 286 (320)
T ss_pred HHHHHhhhhhccCCHHHHHHH
Confidence 999999999988887776544
No 35
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.82 E-value=1.6e-07 Score=77.54 Aligned_cols=132 Identities=19% Similarity=0.327 Sum_probs=101.7
Q ss_pred ccCCeEecCcccCCCH----HHHHhCCCcEEEEcCCCCCC--CCCCCeEEEEEeeecCC--CCChHHHHHHHHHHHHHHH
Q 030712 34 IEQGLFLGSIGAASNK----DALKSRNITHILTVANALAP--AHPNDFVYKVIGVADKE--DTNLSQYFDECISFIDEAK 105 (173)
Q Consensus 34 I~~~l~~G~~~~~~~~----~~l~~~gi~~vi~l~~~~~~--~~~~~~~~~~~p~~d~~--~~~~~~~~~~~~~~i~~~~ 105 (173)
+.++||+|........ ..-....+..||+|.+.... .......++++|+.... .-++...++.++.|+...+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L 371 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHL 371 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4668999998773221 11223568899999877643 34677788999987554 3457888999999999999
Q ss_pred hC--CCcEEEEcCCCCChHHHHHHHHHHhhcCCC----------------HHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 030712 106 RQ--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS----------------LSQAMGHVKSRRPQAAPNSGFLLQLQEL 165 (173)
Q Consensus 106 ~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~----------------~~~A~~~vr~~rp~~~~~~~~~~~L~~~ 165 (173)
.. +++|+|+|..|.+.|.+++++.|+..++.+ ...-+..|-+.+|.+.|+...++.+-.|
T Consensus 372 ~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 372 SSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 88 899999999999999999999999887531 3344667777889999999988887665
No 36
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.79 E-value=1.8e-08 Score=71.73 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=45.3
Q ss_pred CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHh
Q 030712 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 72 ~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~ 132 (173)
..++.|+++|+.|...|.... ++.+++++... .++..+.+||.+|.|||.++++.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~-iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPED-IDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHH-HHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHH-HHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 788999999999988776665 99999999888 667799999999999999988888764
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.74 E-value=2.2e-08 Score=76.09 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC-CCCCeEEEEE---eeec
Q 030712 9 RNQIAAILRVLNLTTCLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA-HPNDFVYKVI---GVAD 84 (173)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~-~~~~~~~~~~---p~~d 84 (173)
.-.+.|..+-.|..|| |..+.+.+-+|..-...-...+ -...++++..-+-.. -...-..+|+ .|.|
T Consensus 125 Lt~l~E~~rekc~qYW------p~~~~~~~~~G~~v~~~~~~e~---~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D 195 (302)
T COG5599 125 LTSLPEYNREKCDQYW------PLGYDDTLIIGLRVIKQKKYEL---FNDNIVNVHNFELTSINGPPKKIHHFQYINWVD 195 (302)
T ss_pred ecChHHHhHHHHhhhC------CCCcCcceeeeeEEEEEecccc---cccceeeeeecccccCCCCccEEEEEEecCccc
Confidence 3456777788888887 5677777777732221100111 112233322111110 0122223333 3456
Q ss_pred CCCCChHHHHHHHHHHHHHHH---hCCCcEEEEcCCCCChHHHHHHHHHHhhcC-----------C--C-HHHHHHHHHh
Q 030712 85 KEDTNLSQYFDECISFIDEAK---RQRGGVLVHCFAGRSRSVTIVVAYLMKKHG-----------M--S-LSQAMGHVKS 147 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~i~~~~---~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~-----------~--~-~~~A~~~vr~ 147 (173)
...++ +.+..+++.... -+++|++|||+||.||||++++.-.+...- + | ..+.+..+|.
T Consensus 196 ~~~p~----i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRs 271 (302)
T COG5599 196 FNVPD----IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRS 271 (302)
T ss_pred cCCcC----HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHH
Confidence 66663 444555555444 256899999999999999988776554321 1 1 3456677888
Q ss_pred hCCCCCCCHhHHHHHHHHHHHh
Q 030712 148 RRPQAAPNSGFLLQLQELEKSL 169 (173)
Q Consensus 148 ~rp~~~~~~~~~~~L~~~~~~l 169 (173)
+|-.+.-|..+..+|..--..|
T Consensus 272 QRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 272 QRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 8855555555555555444443
No 38
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.73 E-value=5.1e-08 Score=85.68 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=65.0
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHHHHHHHHHhh-----cCCCHHHHHHHHHhhCCCCCCC
Q 030712 82 VADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPN 155 (173)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~~~~~A~~~vr~~rp~~~~~ 155 (173)
|+|.+.|+..+.|-++++.|+..... +.||+|||++|+||||+++++=++.. ..+++.+.++.+|.+|-.+..+
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 55666777777788888888877766 66999999999999999776544432 3478999999999999888888
Q ss_pred HhHHHHHHH
Q 030712 156 SGFLLQLQE 164 (173)
Q Consensus 156 ~~~~~~L~~ 164 (173)
..+.+++.+
T Consensus 1116 ~~QYkFVye 1124 (1144)
T KOG0792|consen 1116 LSQYKFVYE 1124 (1144)
T ss_pred hHHhhHHHH
Confidence 888776543
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.72 E-value=5.1e-08 Score=75.03 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=68.8
Q ss_pred eEecCcccCCCHH--HHHhCCCcEEEEcCCCCCCC---CC-CCeE---EEEEeeecCCC-CChHHHHHHHHHHHHHHHhC
Q 030712 38 LFLGSIGAASNKD--ALKSRNITHILTVANALAPA---HP-NDFV---YKVIGVADKED-TNLSQYFDECISFIDEAKRQ 107 (173)
Q Consensus 38 l~~G~~~~~~~~~--~l~~~gi~~vi~l~~~~~~~---~~-~~~~---~~~~p~~d~~~-~~~~~~~~~~~~~i~~~~~~ 107 (173)
.|.++.+...+.. .....++.++|++..+.... +. +.+. ...+...+... +......+.+..+++-.+..
T Consensus 55 ~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 134 (249)
T COG2365 55 DYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLADA 134 (249)
T ss_pred EcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHhhc
Confidence 5666666555444 55566677777776521111 10 1110 11111111111 11122234445555555555
Q ss_pred C-CcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCH
Q 030712 108 R-GGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNS 156 (173)
Q Consensus 108 ~-~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~ 156 (173)
+ +|||+||.+|..|+|.++++|+....+.+...+.+++...++......
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 4 899999999999999999999999876666677778777776544444
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.70 E-value=3.2e-08 Score=80.04 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=76.3
Q ss_pred CHHHHHhCCCcEEEEcCCCCCCCC----------------CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHH---HhCC
Q 030712 48 NKDALKSRNITHILTVANALAPAH----------------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEA---KRQR 108 (173)
Q Consensus 48 ~~~~l~~~gi~~vi~l~~~~~~~~----------------~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~---~~~~ 108 (173)
+...++.+|+-.|-|+.+.....| ..-.+|+.+.|+|.+.|...-.+-.+++-|+.. +...
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcccccc
Confidence 455677889999998877544332 111356667777777665433333344444332 2234
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHh----hc----CCCHHHHHHHHHhhCCCCCCCHhHHHHH
Q 030712 109 GGVLVHCFAGRSRSVTIVVAYLMK----KH----GMSLSQAMGHVKSRRPQAAPNSGFLLQL 162 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~----~~----~~~~~~A~~~vr~~rp~~~~~~~~~~~L 162 (173)
+||.|||++|+||+|+++..-++. .. .+|+...+++||.+|.++.-.+.+.+++
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 699999999999999976554432 22 4689999999999998876666655543
No 41
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.64 E-value=5.1e-08 Score=78.49 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=87.8
Q ss_pred HHHHHhCC--CcEEEEcCCCCCCC-----CCCCeEEEEEeeecCC-CCChHHHHHHHH----HHHHHHHhCCCcEEEEcC
Q 030712 49 KDALKSRN--ITHILTVANALAPA-----HPNDFVYKVIGVADKE-DTNLSQYFDECI----SFIDEAKRQRGGVLVHCF 116 (173)
Q Consensus 49 ~~~l~~~g--i~~vi~l~~~~~~~-----~~~~~~~~~~p~~d~~-~~~~~~~~~~~~----~~i~~~~~~~~~VlVHC~ 116 (173)
+..++..| +.-+||++...-.. ...++.|+.+...... .++... ...++ .|+......++-|+|||.
T Consensus 54 ~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~-v~~fv~~v~~f~~~~~~~~~LI~vhct 132 (393)
T KOG2386|consen 54 FELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTEL-VDKFVKLVKGFVDDTKLDDELIGVHCT 132 (393)
T ss_pred HHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccc-hHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 34455544 66899998764211 3677778877665443 222221 33334 444444446899999999
Q ss_pred CCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHh
Q 030712 117 AGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l 169 (173)
.|.+|+|.++++||+...+++..+|+..+...||...-.+.++..|...+...
T Consensus 133 hG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 133 HGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred CcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 99999999999999999999999999999999998888888888888766543
No 42
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.54 E-value=1.7e-07 Score=79.41 Aligned_cols=84 Identities=13% Similarity=0.310 Sum_probs=66.0
Q ss_pred EEEEeeecCCCCChHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCChHHHHHHHHHHhh---c---CCCHHHHHHHHHhhC
Q 030712 77 YKVIGVADKEDTNLSQYFDECISFIDEAKR-QRGGVLVHCFAGRSRSVTIVVAYLMKK---H---GMSLSQAMGHVKSRR 149 (173)
Q Consensus 77 ~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~v~~ayL~~~---~---~~~~~~A~~~vr~~r 149 (173)
||.+.|.+...+...+.+-+|-+-+++++. ..++|+|||++|.||||+.++.-++.. + .+|+...+.++|.+|
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR 974 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR 974 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence 566677777788777778888888888875 469999999999999999877766642 2 368888999999999
Q ss_pred CCCCCCHhHHH
Q 030712 150 PQAAPNSGFLL 160 (173)
Q Consensus 150 p~~~~~~~~~~ 160 (173)
|++.-+..+++
T Consensus 975 ~GmVaTkdQFe 985 (1004)
T KOG0793|consen 975 PGMVATKDQFE 985 (1004)
T ss_pred CcceeehhhhH
Confidence 99655544444
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.39 E-value=5.3e-06 Score=65.90 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=68.5
Q ss_pred eEEEEEeeecCCCCChHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHHHHHHHHHhhc-----CCCHHHHHHHHHhh
Q 030712 75 FVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVTIVVAYLMKKH-----GMSLSQAMGHVKSR 148 (173)
Q Consensus 75 ~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~~-----~~~~~~A~~~vr~~ 148 (173)
.+++...+.|.+.+.....+..+...+.+.... .+++.|||++|.||||++.+.--+... -.+....+-..|..
T Consensus 253 r~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred EEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 345555666766665444466666666666653 589999999999999998876555321 24677778888888
Q ss_pred CCCCCCCHhHHHHHHHHH-HHhccC
Q 030712 149 RPQAAPNSGFLLQLQELE-KSLQGR 172 (173)
Q Consensus 149 rp~~~~~~~~~~~L~~~~-~~l~~~ 172 (173)
|+.+.+++.+.-+|.+-- ..|++|
T Consensus 333 R~~mVqte~Qyvfl~~c~~~~l~~~ 357 (374)
T KOG0791|consen 333 RMLMVQTEDQYVFLHQCVLESLQGK 357 (374)
T ss_pred cccccchHHHHHHHHHHHHHHHhCC
Confidence 999999988888877643 344443
No 44
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.28 E-value=4.3e-06 Score=68.65 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhh---c---CCCHHHHHHHHHhhCCCCCCCHhHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKK---H---GMSLSQAMGHVKSRRPQAAPNSGFLLQ 161 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~---~---~~~~~~A~~~vr~~rp~~~~~~~~~~~ 161 (173)
..+|+.|||.+|.||||++++.-.+.. . ..+..+.+..+|.+|+++..+..+.-.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f 358 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLF 358 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHH
Confidence 357999999999999999987653321 1 245888888999999887776655543
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.94 E-value=1.6e-05 Score=70.92 Aligned_cols=107 Identities=12% Similarity=0.173 Sum_probs=58.9
Q ss_pred CHHHHHhCCCcEEEEcCCCCCCCCCCCeE-EEEEeeecCCCCChHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCChHHHH
Q 030712 48 NKDALKSRNITHILTVANALAPAHPNDFV-YKVIGVADKEDTNLSQYFDECISFIDEAKR-QRGGVLVHCFAGRSRSVTI 125 (173)
Q Consensus 48 ~~~~l~~~gi~~vi~l~~~~~~~~~~~~~-~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~v 125 (173)
+...+..++|++ .++....+.. ...++ +|...++|...|....-+-.+.+-+...-. ..+|++|||++|.||||++
T Consensus 670 ~~~~~a~y~iRt-f~l~~~g~~~-~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~f 747 (1087)
T KOG4228|consen 670 QTKPLAEYGIRT-FALKKQGENP-KREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCF 747 (1087)
T ss_pred eeeeeccceEEe-eeccccCCCC-CceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceE
Confidence 334444444432 3443322221 33343 333456666665443334333333333321 2379999999999999996
Q ss_pred HHHHHH-----hhcCCCHHHHHHHHHhhCCCCCCCH
Q 030712 126 VVAYLM-----KKHGMSLSQAMGHVKSRRPQAAPNS 156 (173)
Q Consensus 126 ~~ayL~-----~~~~~~~~~A~~~vr~~rp~~~~~~ 156 (173)
++.=-| .....+.-.-+..+|.+|++..-..
T Consensus 748 i~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~ 783 (1087)
T KOG4228|consen 748 IVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTE 783 (1087)
T ss_pred EEeHHHHHHHHhhCccceechhHHHHhccccccccH
Confidence 544333 3344677777888888887644443
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.73 E-value=6.9e-05 Score=66.98 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEcCCCCChHHHHHHHHHHhh-----cCCCHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 030712 94 FDECISFIDEAKRQ--RGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (173)
Q Consensus 94 ~~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~ 164 (173)
+..+......+.+. .+|+.|||.+|.||||++|++.++.. .-+|+..+.+.+|..||++.-...+.+.+.+
T Consensus 1002 ~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYd 1079 (1087)
T KOG4228|consen 1002 ISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYD 1079 (1087)
T ss_pred hhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHH
Confidence 33334444444332 47999999999999999988877753 2378999999999999987777666665543
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.26 E-value=0.0012 Score=46.39 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=42.0
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhC---CCcEEEEcCCCCCh----HHHHHHHHHHhhcCCCHHHHHHHHHhhCC
Q 030712 83 ADKEDTNLSQYFDECISFIDEAKRQ---RGGVLVHCFAGRSR----SVTIVVAYLMKKHGMSLSQAMGHVKSRRP 150 (173)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~~R----S~~v~~ayL~~~~~~~~~~A~~~vr~~rp 150 (173)
.|.++.++.. +-.++..+++.++. .++.+|||++...+ +++++.+|+|...|+++++|++-+...-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5777777776 55667777777765 46788888765443 37799999999999999999999988754
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0053 Score=52.07 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLM 131 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (173)
+..++..+.+.-..+.+|||||++|.+||+=+++..++
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHH
Confidence 44455555555567899999999999999875554433
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=95.47 E-value=0.047 Score=35.67 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=19.5
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+++|+|+|..| .||...+ .+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~-~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKAS-AYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHH-HHH-HHhCCc
Confidence 4567999999998 5886543 344 334553
No 50
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=95.25 E-value=0.064 Score=43.51 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=19.3
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHH
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLM 131 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (173)
.+|..|+|||..|.+||+-+++...+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHH
Confidence 47899999999999999776654443
No 51
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=94.63 E-value=0.078 Score=45.22 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHh-CCCcEEEEcCCCCChHHHHHHH
Q 030712 100 FIDEAKR-QRGGVLVHCFAGRSRSVTIVVA 128 (173)
Q Consensus 100 ~i~~~~~-~~~~VlVHC~~G~~RS~~v~~a 128 (173)
+|..++. ++-+|||||+.|.+||..|+..
T Consensus 335 ~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 335 EIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 4444444 5689999999999999776653
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.095 Score=34.42 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=42.7
Q ss_pred HHHhCCCcEEEEcCCCCCCCCCCCeE-EEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHH
Q 030712 51 ALKSRNITHILTVANALAPAHPNDFV-YKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY 129 (173)
Q Consensus 51 ~l~~~gi~~vi~l~~~~~~~~~~~~~-~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 129 (173)
.+...+-..++|++.+.+....+-.. ..++|+.+........ . ...+++++|+|..|. ||.. ++.+
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~---------~--~~~~~~ivv~C~~G~-rS~~-aa~~ 80 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLL---------E--LPDDDPIVVYCASGV-RSAA-AAAA 80 (110)
T ss_pred HhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhccc---------c--cCCCCeEEEEeCCCC-ChHH-HHHH
Confidence 34445667899998875433222223 6667776543321111 0 556789999999995 8844 4455
Q ss_pred HHhhcCCC
Q 030712 130 LMKKHGMS 137 (173)
Q Consensus 130 L~~~~~~~ 137 (173)
|... |.+
T Consensus 81 L~~~-G~~ 87 (110)
T COG0607 81 LKLA-GFT 87 (110)
T ss_pred HHHc-CCc
Confidence 5554 443
No 53
>PLN02160 thiosulfate sulfurtransferase
Probab=93.94 E-value=0.086 Score=36.77 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=35.2
Q ss_pred hCCCcEEEEcCCCCCCC--CCCCeEEEEEeeecCCC-CChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 030712 54 SRNITHILTVANALAPA--HPNDFVYKVIGVADKED-TNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 54 ~~gi~~vi~l~~~~~~~--~~~~~~~~~~p~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (173)
..+ ..+||++...+.. +..+-....+|+.+... ..+.. ..+...+...+..+++|++||..| .||...+
T Consensus 27 ~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~~~IivyC~sG-~RS~~Aa 98 (136)
T PLN02160 27 QSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPADDILVGCQSG-ARSLKAT 98 (136)
T ss_pred hCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCC--HHHHHHHHhccCCCCcEEEECCCc-HHHHHHH
Confidence 345 3689998876532 12222234566532211 11100 011122222235678999999999 5887654
No 54
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=92.57 E-value=0.54 Score=31.65 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=37.2
Q ss_pred CcEEEEcCCCCCCC-CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcC
Q 030712 57 ITHILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHG 135 (173)
Q Consensus 57 i~~vi~l~~~~~~~-~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~ 135 (173)
-..|||++.+.+.. ..+--.-.++|+.+........ .+...+......+.+|+++|..| .||...+ ..|. ..|
T Consensus 15 ~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~---~~~~~l~~~~~~~~~ivv~C~~G-~rs~~aa-~~L~-~~G 88 (117)
T cd01522 15 QAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINP---NFLAELEEKVGKDRPVLLLCRSG-NRSIAAA-EAAA-QAG 88 (117)
T ss_pred CeEEEECCCHHHHhcccCCCCceecchhhccccccCH---HHHHHHHhhCCCCCeEEEEcCCC-ccHHHHH-HHHH-HCC
Confidence 45688998765532 1111123455554332211111 12233333335678999999998 4776543 3333 345
Q ss_pred C
Q 030712 136 M 136 (173)
Q Consensus 136 ~ 136 (173)
.
T Consensus 89 ~ 89 (117)
T cd01522 89 F 89 (117)
T ss_pred C
Confidence 4
No 55
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=91.99 E-value=0.42 Score=32.70 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=20.3
Q ss_pred HhCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 105 KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
+..+.+|+|.|..|-.||..++ +++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4567899999975445776544 55565565
No 56
>PRK01415 hypothetical protein; Validated
Probab=90.99 E-value=0.53 Score=36.33 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.0
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+++|+++|.+|. ||.. ++++|.. .|.+
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~k-Aa~~L~~-~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEK-STSLLKS-IGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HHHH-HHHHHHH-cCCC
Confidence 46789999999995 8744 4456554 3653
No 57
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=90.75 E-value=0.68 Score=29.96 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=18.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+++|+|+|..|. ||..++ ..|. ..|++
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~~L~-~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-ELLA-ERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-HHHH-HcCce
Confidence 45679999999984 775433 3443 34653
No 58
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=90.20 E-value=0.66 Score=31.18 Aligned_cols=30 Identities=17% Similarity=-0.050 Sum_probs=19.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+.+|+++|..| ++++..++..|.. .|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l~~-~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTLRY-FGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHHHH-cCCC
Confidence 3578999999997 4555555555443 4654
No 59
>PRK05320 rhodanese superfamily protein; Provisional
Probab=89.80 E-value=0.68 Score=35.93 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+++|+++|.+|. ||.- ++.+|.. .|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCCc
Confidence 5789999999994 8755 4556654 3553
No 60
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=89.35 E-value=0.69 Score=36.99 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+++|+|+|.+|. ||.. ++.+|.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCCC
Confidence 5689999999985 8854 4556554 4653
No 61
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=88.24 E-value=3 Score=33.00 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHh--CCCcE
Q 030712 34 IEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR--QRGGV 111 (173)
Q Consensus 34 I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~V 111 (173)
|.|.-.+|.+....+...+-.-.-+.|||.++..+... =.+.+...|+... |+++..+|.+... .+++|
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~i--------G~F~gAv~p~~~t-FrefP~~v~~~~~~~~~KkV 175 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAI--------GHFEGAVEPDIET-FREFPAWVEENLDLLKDKKV 175 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEee--------eeecCccCCChhh-hhhhHHHHHHHHHhccCCcE
Confidence 55555555555544443333333366677766655211 1123444555665 8888999987765 47899
Q ss_pred EEEcCCCCChHHHHHHHHHHh
Q 030712 112 LVHCFAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 112 lVHC~~G~~RS~~v~~ayL~~ 132 (173)
+..|++|+ |.-- +.+||..
T Consensus 176 vmyCTGGI-RCEK-as~~m~~ 194 (308)
T COG1054 176 VMYCTGGI-RCEK-ASAWMKE 194 (308)
T ss_pred EEEcCCce-eehh-hHHHHHH
Confidence 99999998 7633 3445554
No 62
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=87.56 E-value=6.8 Score=28.04 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=20.0
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+.+|++.|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3568999999998767765 33444444543
No 63
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=87.05 E-value=3.2 Score=27.49 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~ 126 (173)
...+|++||..|..||...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 34689999998656875543
No 64
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.02 E-value=1.2 Score=29.01 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=40.1
Q ss_pred hCCCcEEEEcCCCCCCC--CCCCeEEEEEeeecC---CCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHH
Q 030712 54 SRNITHILTVANALAPA--HPNDFVYKVIGVADK---EDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVA 128 (173)
Q Consensus 54 ~~gi~~vi~l~~~~~~~--~~~~~~~~~~p~~d~---~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 128 (173)
..+=..|||++...... +..+ -.++|+... ........+.............+..|+++|..|. |+...+++
T Consensus 10 ~~~~~~liD~R~~~~~~~~hI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEYERGHIPG--AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHHHHHHSBETT--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHHHHHcCCCCC--Cccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 34556888998654421 1222 366777443 2223333344444444444456778999997764 66554444
No 65
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=85.74 E-value=2.8 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCCChHHHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ 127 (173)
.+.+|+++|..+..||...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 456999999855468766543
No 66
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=85.32 E-value=1.2 Score=30.78 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=41.2
Q ss_pred HHHHHhCCCcEEEEcCCCCCCCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHH
Q 030712 49 KDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 49 ~~~l~~~gi~~vi~l~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~ 124 (173)
...|-..+-...||++++++....+--.-+.+|+...+..-..+ -.+|.+-+...... ...|.++|..|. ||..
T Consensus 30 vk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~-~~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 30 VKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALK-NPEFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred HHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccC-CHHHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 34455566678888888776443222455666764333221111 12234444433333 358999999996 8854
No 67
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=85.02 E-value=4.8 Score=27.68 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=36.2
Q ss_pred EEEeeecCCCCC-hHHHHHHHHHHHHHHHhCCCc-EEEEcCCCCChHHHHHHHHHHhhcC
Q 030712 78 KVIGVADKEDTN-LSQYFDECISFIDEAKRQRGG-VLVHCFAGRSRSVTIVVAYLMKKHG 135 (173)
Q Consensus 78 ~~~p~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-VlVHC~~G~~RS~~v~~ayL~~~~~ 135 (173)
+.+|++|...+. ....++.+.+.|.+..++++. .+--|-+|--++.++.++|.+..+|
T Consensus 57 i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 57 IPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred eccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 334566665443 344455556666666565542 3444667766788899999888877
No 68
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=84.61 E-value=0.97 Score=29.40 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+.+|+|+|..|. ||.. ++ .++...|.+
T Consensus 65 ~~~~ivv~c~~g~-~s~~-~~-~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA-AA-ELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHHH-HH-HHHHHcCCc
Confidence 4679999999985 7644 33 333444653
No 69
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=83.74 E-value=3.7 Score=26.95 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
.+.+|+|+|..|. ||.. ++..| ...|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 4579999999995 7744 34444 34465
No 70
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=83.63 E-value=0.96 Score=29.12 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=13.8
Q ss_pred hCCCcEEEEcCCCCChHHH
Q 030712 106 RQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~ 124 (173)
..+++|+++|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 45679999999984 6654
No 71
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=83.41 E-value=2.7 Score=33.63 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=13.7
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~ 126 (173)
.+..|+|+|..|-.||..++
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa 92 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA 92 (311)
T ss_pred CCCcEEEEECCCChHHHHHH
Confidence 34459999975546887654
No 72
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=82.90 E-value=2.5 Score=34.33 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~ 126 (173)
.+.+|+|+|..|-.||+.++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 56799999976557987764
No 73
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=78.90 E-value=5.1 Score=31.58 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=15.1
Q ss_pred cEEEEcCCCCChHHHHH
Q 030712 110 GVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (173)
.|-|-|++|..||.+++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 68899999999998765
No 74
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=77.11 E-value=5.4 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhh
Q 030712 123 VTIVVAYLMKKHGMSLSQAMGHVKSR 148 (173)
Q Consensus 123 ~~v~~ayL~~~~~~~~~~A~~~vr~~ 148 (173)
-.-+.+.||...|++.++|++.++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44677889998999999999999875
No 75
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=76.71 E-value=6.8 Score=25.68 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
.+.+|+++|..|. ||...+ ..|. ..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa-~~L~-~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK-DILL-DMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH-HHHH-HcCC
Confidence 4568999999984 775543 3333 3354
No 76
>PRK05569 flavodoxin; Provisional
Probab=76.54 E-value=17 Score=24.89 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=58.7
Q ss_pred HHHhCCCc-EEEEcCCCCCCC-CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCC-hHHHHHH
Q 030712 51 ALKSRNIT-HILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS-RSVTIVV 127 (173)
Q Consensus 51 ~l~~~gi~-~vi~l~~~~~~~-~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~-RS~~v~~ 127 (173)
.+.+.|+. .++++....... ...+.-.+..|.-...... .+.+..+++.+....-.|+++.+.++.|.+ ..+.-.+
T Consensus 25 ~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~ 103 (141)
T PRK05569 25 GAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLW 103 (141)
T ss_pred HHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHH
Confidence 34445654 444544322211 1334445555654333211 112444455444333468899999998865 2222223
Q ss_pred HHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhc
Q 030712 128 AYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (173)
Q Consensus 128 ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~ 170 (173)
.-.+...|+..... ..-...|++.-.+.+.+|.++|-
T Consensus 104 ~~~l~~~g~~~~~~------~~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 104 KDRMKDYGFNVIGD------LAVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred HHHHHHCCCeEeee------EEEccCCCHHHHHHHHHHHHHHh
Confidence 33444456554222 11124689999999999988774
No 77
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=75.82 E-value=6.8 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHH----hCCC---cEEEEcCCCCChHHHHHH
Q 030712 92 QYFDECISFIDEAK----RQRG---GVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 92 ~~~~~~~~~i~~~~----~~~~---~VlVHC~~G~~RS~~v~~ 127 (173)
..++.+.+++..++ ++|+ .|-|-|++|..||.+++=
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 34445555554444 2342 488999999999977653
No 78
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=75.64 E-value=9.5 Score=23.67 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+.+|+|+|..| .|+.. + +..+...|.+
T Consensus 54 ~~~~~iv~~c~~g-~~a~~-~-~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSG-NRSAK-A-AWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCC-cHHHH-H-HHHHHHcCCC
Confidence 3568999999665 46633 2 3333344544
No 79
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=73.85 E-value=7.8 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHH----hCCC---cEEEEcCCCCChHHHHH
Q 030712 93 YFDECISFIDEAK----RQRG---GVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 93 ~~~~~~~~i~~~~----~~~~---~VlVHC~~G~~RS~~v~ 126 (173)
.+.++.+++..++ ++|+ .|.|-|++|..||.+++
T Consensus 221 f~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 221 FYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHH
Confidence 3444555555544 3454 57789999999998765
No 80
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=73.73 E-value=10 Score=26.61 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
...-++++++++.+.|.+|+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46678999999999999999999764
No 81
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=73.72 E-value=8.8 Score=24.64 Aligned_cols=28 Identities=25% Similarity=0.681 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+++|++.|..| .||... +.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 477999999998 587554 334443 4554
No 82
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=73.57 E-value=9.7 Score=25.92 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEc-CCCCChHHHHHHHHHHhhcCC----CHHHHHHHHHhhC
Q 030712 94 FDECISFIDEAKRQRGGVLVHC-FAGRSRSVTIVVAYLMKKHGM----SLSQAMGHVKSRR 149 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~v~~ayL~~~~~~----~~~~A~~~vr~~r 149 (173)
++.+..++....+ + |+ .+|.-|++.+++..++...|. +.+++.+++...-
T Consensus 51 ~~kAa~l~~~l~~-~-----HpF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA 105 (121)
T TIGR01550 51 FEVSAVLLYALIR-S-----HPFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVA 105 (121)
T ss_pred HHHHHHHHHHHHH-h-----CCCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHH
Confidence 4444444444433 3 55 589999999999999888774 5777777776664
No 83
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=73.04 E-value=9.1 Score=24.95 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=18.4
Q ss_pred HhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 105 KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
+..+.+++|+|..|. ||... +.. +...|.+
T Consensus 55 ~~~~~~ivv~c~~g~-~s~~a-~~~-L~~~G~~ 84 (108)
T PRK00162 55 ADFDTPVMVMCYHGN-SSQGA-AQY-LLQQGFD 84 (108)
T ss_pred cCCCCCEEEEeCCCC-CHHHH-HHH-HHHCCch
Confidence 345679999999985 66443 223 3344553
No 84
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=71.63 E-value=7.5 Score=27.43 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
.+-++.+++++...|.+|+|+|.+-
T Consensus 15 ~~~~c~L~~k~~~~G~rvlI~~~d~ 39 (144)
T COG2927 15 LAAACRLAEKAWRSGWRVLIQCEDE 39 (144)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3368999999999999999999763
No 85
>PRK07411 hypothetical protein; Validated
Probab=71.60 E-value=4.7 Score=33.24 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=34.4
Q ss_pred EEEEcCCCCCCCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 59 HILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 59 ~vi~l~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+||++...+....+--.-+++|+.+...... .+.+.+ +..+++|+|+|..|. ||.. ++..| ...|++
T Consensus 301 vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~-------~~~l~~-l~~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~~ 368 (390)
T PRK07411 301 VLIDVRNPNEYEIARIPGSVLVPLPDIENGPG-------VEKVKE-LLNGHRLIAHCKMGG-RSAK-ALGIL-KEAGIE 368 (390)
T ss_pred EEEECCCHHHhccCcCCCCEEccHHHhhcccc-------hHHHhh-cCCCCeEEEECCCCH-HHHH-HHHHH-HHcCCC
Confidence 58899876542211101234466654322111 111111 124679999999885 8855 34444 344654
No 86
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=71.56 E-value=8.4 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
.+.+|+|.|..|...++..++..|.. .|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~-~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSE-LGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHH-cCc
Confidence 36799999999853334455444443 354
No 87
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=71.42 E-value=11 Score=28.63 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=36.9
Q ss_pred EeeecCCCCC-hHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcC
Q 030712 80 IGVADKEDTN-LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHG 135 (173)
Q Consensus 80 ~p~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~ 135 (173)
.|++|...+. .....+.+.+.|.+..+..+..+.-|-+|--++.++.++|.+..+|
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 4555554432 3334555666777766664566666778877888899999888777
No 88
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=70.98 E-value=13 Score=26.57 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
.+.-++++++++..+|.+|+|+|.+.
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 46678999999999999999999764
No 89
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=70.01 E-value=17 Score=26.95 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHh
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~ 132 (173)
+.+..+.+.+.+.+.++++|++. |.|+|++++.-.-..
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~~ 62 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAAS 62 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHHH
Confidence 45778888888888899899984 666887766555543
No 90
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=69.30 E-value=8.2 Score=27.77 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCcEEEEcC--CCCChHHHHHHHHHHhh----------cCCCHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 030712 97 CISFIDEAKRQRGGVLVHCF--AGRSRSVTIVVAYLMKK----------HGMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (173)
Q Consensus 97 ~~~~i~~~~~~~~~VlVHC~--~G~~RS~~v~~ayL~~~----------~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~ 164 (173)
+.++|.+.+.++ .++||=- ..+.|+++|-+.||... .-++.++.+..+...-. ......+...|..
T Consensus 16 I~rlvke~l~E~-~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eief-s~f~~plk~~Le~ 93 (172)
T KOG0870|consen 16 ITRLVKEVLPES-NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEF-SSFVNPLKSALEA 93 (172)
T ss_pred HHHHHHHhCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhch-HHHhhHHHHHHHH
Confidence 456777776665 6888763 46789998888888743 24788999988888863 3445578999999
Q ss_pred HHHHhccCC
Q 030712 165 LEKSLQGRT 173 (173)
Q Consensus 165 ~~~~l~~~~ 173 (173)
|.+.+++|+
T Consensus 94 yk~~~k~Kk 102 (172)
T KOG0870|consen 94 YKKAVKQKK 102 (172)
T ss_pred HHHHHHHHH
Confidence 999888874
No 91
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=68.78 E-value=7.4 Score=24.71 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=18.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+.+|+++|..|. ||... +..| ...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~a-a~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADMT-ASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHHH-HHHH-HHcCCE
Confidence 3579999999985 77543 3344 444553
No 92
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.26 E-value=5.2 Score=26.00 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=13.0
Q ss_pred CCcEEEEcCCCCChHHHH
Q 030712 108 RGGVLVHCFAGRSRSVTI 125 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v 125 (173)
..+||+.|.+|.+ |+.+
T Consensus 3 ~~~ILl~C~~G~s-SS~l 19 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLL 19 (95)
T ss_pred ccEEEEECCCchh-HHHH
Confidence 3589999999988 4443
No 93
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=66.95 E-value=3.1 Score=27.27 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=9.3
Q ss_pred CCcEEEEcCCC
Q 030712 108 RGGVLVHCFAG 118 (173)
Q Consensus 108 ~~~VlVHC~~G 118 (173)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36999999987
No 94
>PLN02449 ferrochelatase
Probab=66.23 E-value=20 Score=30.63 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHHHHHHhhhhh--cccCCCCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC---------
Q 030712 2 DQMDNAYRNQIAAILRVLNLTT--CLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA--------- 70 (173)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~--------- 70 (173)
|-|++-+......+...+...- ..+...+=+++.|.=|+++... ...+.|...|++.|+-+.-..-..
T Consensus 296 DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~-d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiD 374 (485)
T PLN02449 296 DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTD-ETIVELGKKGVKSLLAVPISFVSEHIETLEEID 374 (485)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHH-HHHHHHHHcCCCeEEEECCcccccchHHHHHHH
Confidence 4477667777777777664321 0111123335677778888765 346778889999888765432111
Q ss_pred -------CCCCe-EEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEE
Q 030712 71 -------HPNDF-VYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVH 114 (173)
Q Consensus 71 -------~~~~~-~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 114 (173)
...|+ +|.++|..+..+. .++.+.+.|.+.+...+...+.
T Consensus 375 iE~re~a~e~G~~~~~rVP~LN~~p~----FI~~La~lV~~~l~~~~~~~~~ 422 (485)
T PLN02449 375 MEYRELALESGIENWGRVPALGCEPT----FISDLADAVIEALPYVGAMAVS 422 (485)
T ss_pred HHHHHHHHHcCCceEEEcCCCCCCHH----HHHHHHHHHHHHhhcccccccc
Confidence 14566 6888887654332 3455566777766542333433
No 95
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=66.23 E-value=14 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=13.8
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~ 126 (173)
.+.+|+++|.+| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 456899999988 4665543
No 96
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=66.00 E-value=12 Score=23.43 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=13.9
Q ss_pred HhCCCcEEEEcCCCCChHHH
Q 030712 105 KRQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~ 124 (173)
+..+.+|+|+|..|. ||..
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~ 71 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ 71 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH
Confidence 456789999999764 5544
No 97
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=65.63 E-value=10 Score=26.41 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
..-+++++++..++|.+|+|+|.+-
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4568899999999999999999874
No 98
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=65.39 E-value=8.3 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=16.9
Q ss_pred hCCCcEEEEcC-CCCChHHHHHHHHHHh
Q 030712 106 RQRGGVLVHCF-AGRSRSVTIVVAYLMK 132 (173)
Q Consensus 106 ~~~~~VlVHC~-~G~~RS~~v~~ayL~~ 132 (173)
....+|++||. +| .||+.++ .+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~aa-~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRMA-RHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHHH-HHHHH
Confidence 45789999997 66 5776544 45544
No 99
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=64.72 E-value=8.3 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.8
Q ss_pred CcEEEEcCCCCChHHH
Q 030712 109 GGVLVHCFAGRSRSVT 124 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~ 124 (173)
++|++.|.+|.|-|..
T Consensus 1 ~kilvvCg~G~gtS~m 16 (87)
T cd05567 1 KKIVFACDAGMGSSAM 16 (87)
T ss_pred CEEEEECCCCccHHHH
Confidence 3799999999986644
No 100
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=64.51 E-value=12 Score=24.11 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
+.+|+++|..|. ||..++. . +...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~-~-L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA-F-LVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH-H-HHHcCCC
Confidence 579999999985 7755443 3 3344553
No 101
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=64.38 E-value=22 Score=27.54 Aligned_cols=55 Identities=18% Similarity=-0.002 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHH------HHhhcCCCHHHHHHHHHh
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY------LMKKHGMSLSQAMGHVKS 147 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay------L~~~~~~~~~~A~~~vr~ 147 (173)
..+-+.+.++-+.+.+.||.|||....+..--+.-.+ +++.+.=+++.|.++++.
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 3455666676677778899999987665544433332 222233467888877775
No 102
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=62.76 E-value=9.5 Score=24.22 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=18.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+.+|+|+|..| +||..+ +.+| ...|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCCC
Confidence 4567999999877 577554 3444 444653
No 103
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=62.60 E-value=10 Score=29.51 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=20.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCHHHHHH
Q 030712 116 FAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (173)
Q Consensus 116 ~~G~~RS~~v~~ayL~~~~~~~~~~A~~ 143 (173)
.-|.||||+.+++-++. |++.++|.+
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~ 184 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAAR 184 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHH
Confidence 36999999988887764 788888864
No 104
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=61.08 E-value=26 Score=26.30 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
...+.+.+.|.+.-...+..+-.|-+|--++.++.+.|-+..+|-+
T Consensus 101 ~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr~ 146 (209)
T TIGR02584 101 AAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGRE 146 (209)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCCc
Confidence 3345555666666555556666677887778888888888777643
No 105
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=60.64 E-value=47 Score=24.06 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCCeeccCCeEecCcccCCCHHH--HHhCCCcEEE-EcCCCC
Q 030712 29 RVPFEIEQGLFLGSIGAASNKDA--LKSRNITHIL-TVANAL 67 (173)
Q Consensus 29 ~~~~~I~~~l~~G~~~~~~~~~~--l~~~gi~~vi-~l~~~~ 67 (173)
..|+-+.|++++.+..+. +.+. |++.||+.+| |..+..
T Consensus 12 ~~p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~DkDNTL 52 (168)
T PF09419_consen 12 RNPSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIFDKDNTL 52 (168)
T ss_pred cCccccCCCEEcCChhhC-CcchhhhhhcCceEEEEcCCCCC
Confidence 458899999999887764 5566 9999999776 665543
No 106
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=59.71 E-value=20 Score=27.81 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHH------HhhcCCCHHHHHHHHHh
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL------MKKHGMSLSQAMGHVKS 147 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL------~~~~~~~~~~A~~~vr~ 147 (173)
..+.+...|+-+.+.+.||.|||+......-.+.-.+. ++.+.=+.+.|.+.+..
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHc
Confidence 34556667777777778888888876555544433332 12223366666666644
No 107
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=59.71 E-value=13 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=17.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
..+.+|+|+|..| .||.. ++ .++...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~~-~~-~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL-AG-KTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH-HH-HHHHHcCh
Confidence 4578999999887 57643 33 33344454
No 108
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=59.70 E-value=12 Score=24.99 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=18.4
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
..+++|+++|..|. ||...+ .+| ...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RKL-KELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HHH-HHcCC
Confidence 45689999999984 875433 333 33455
No 109
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=59.12 E-value=44 Score=27.65 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=40.4
Q ss_pred EEEcCCCCChHHHHHHHH---------------------------------HHhhcCCCHHHHHHHHHhhCCCCCCCHhH
Q 030712 112 LVHCFAGRSRSVTIVVAY---------------------------------LMKKHGMSLSQAMGHVKSRRPQAAPNSGF 158 (173)
Q Consensus 112 lVHC~~G~~RS~~v~~ay---------------------------------L~~~~~~~~~~A~~~vr~~rp~~~~~~~~ 158 (173)
|=.|-+-.+|-++-++.. +...+.++..+.+++.+.+. ++-....+
T Consensus 324 LDfFDasInRIaAwviG~rn~qKAll~ALL~p~~~L~~~e~~gd~t~rlAl~Ee~K~~P~gaVwd~yC~~~-~vP~~~~w 402 (417)
T PF06134_consen 324 LDFFDASINRIAAWVIGTRNMQKALLKALLEPTEALKEAEDEGDFTERLALLEEFKSLPFGAVWDYYCERN-GVPVGEDW 402 (417)
T ss_dssp E----TSS-HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCTT-HHHHHHHHHHHCCSSHHHHHHHHHHHT-TS-STTTH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHc-CCCCcHHH
Confidence 447889999988744432 22234567777778888887 56668899
Q ss_pred HHHHHHHHHHhccCC
Q 030712 159 LLQLQELEKSLQGRT 173 (173)
Q Consensus 159 ~~~L~~~~~~l~~~~ 173 (173)
+..+.+|++.+..||
T Consensus 403 ~~~v~~YE~~Vl~kR 417 (417)
T PF06134_consen 403 LDEVKQYEKEVLSKR 417 (417)
T ss_dssp HHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998886
No 110
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=57.91 E-value=12 Score=29.49 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCHHHHHH
Q 030712 117 AGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~~~~~~~A~~ 143 (173)
-|.||||+...+-++. |++.++|.+
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~ 190 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAAR 190 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHH
Confidence 5999999988877764 888888863
No 111
>PF12643 MazG-like: MazG-like family
Probab=57.63 E-value=52 Score=21.59 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHh-hcCCC---HHHHHHHHHhhCCCCCCC-HhHHHHHHHHHHHhccCC
Q 030712 121 RSVTIVVAYLMK-KHGMS---LSQAMGHVKSRRPQAAPN-SGFLLQLQELEKSLQGRT 173 (173)
Q Consensus 121 RS~~v~~ayL~~-~~~~~---~~~A~~~vr~~rp~~~~~-~~~~~~L~~~~~~l~~~~ 173 (173)
-+..++.+|++. ..|+| +++++..=-.....--|. +.....+..+.+.|++|+
T Consensus 41 LAdvii~~ylLa~rLGid~~~lD~~i~~KL~~~~~k~~~~Ek~~gdls~l~~~l~~r~ 98 (98)
T PF12643_consen 41 LADVIIYCYLLADRLGIDFRELDEIIKEKLKKNIEKYPVLEKWYGDLSKLEQHLKKRE 98 (98)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccccchHHHHhccHHHHHHHHhccC
Confidence 356778888874 67999 454442211112122333 466677888888887764
No 112
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=57.40 E-value=28 Score=26.29 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhh
Q 030712 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSR 148 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~ 148 (173)
+++|.|||.. .+....++-++|....++-++++.++++.
T Consensus 185 NGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 185 NGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred CceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6799999998 46677888899999899988888776654
No 113
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=57.15 E-value=12 Score=28.98 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCHHHHHH
Q 030712 117 AGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~~~~~~~A~~ 143 (173)
-|.||||+...+-+.. |++.++|.+
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~ 184 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAE 184 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHH
Confidence 5999999988877764 788888863
No 114
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=56.99 E-value=13 Score=29.13 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCHHHHHH
Q 030712 117 AGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~~~~~~~A~~ 143 (173)
-|.||||+...+-+.. |++.++|.+
T Consensus 164 PGiSRSG~TI~~~l~~--G~~r~~Aa~ 188 (268)
T PRK00281 164 PGTSRSGATISGGLLL--GLSREAAAE 188 (268)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHH
Confidence 6999999988877764 888888863
No 115
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=55.91 E-value=32 Score=28.23 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=10.3
Q ss_pred CCCcEEEEcCCC
Q 030712 107 QRGGVLVHCFAG 118 (173)
Q Consensus 107 ~~~~VlVHC~~G 118 (173)
.|..||.||.+|
T Consensus 166 dg~~ILThcnsg 177 (363)
T PRK05772 166 DGDTVLTQCNAG 177 (363)
T ss_pred CCCEEEEecCCc
Confidence 577899999886
No 116
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=55.09 E-value=12 Score=24.78 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=11.0
Q ss_pred CcEEEEcCCCCChH
Q 030712 109 GGVLVHCFAGRSRS 122 (173)
Q Consensus 109 ~~VlVHC~~G~~RS 122 (173)
++||+.|.+|.+-|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 37999999999433
No 117
>smart00400 ZnF_CHCC zinc finger.
Probab=54.56 E-value=16 Score=20.94 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=21.8
Q ss_pred EEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHH
Q 030712 112 LVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHV 145 (173)
Q Consensus 112 lVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~v 145 (173)
..||.+- |+.|-+ +-+++...|++..+|++.+
T Consensus 23 ~~~Cf~c-g~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFGC-GAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeCC-CCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 4678752 344544 5566677799999999865
No 118
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=53.13 E-value=1.6e+02 Score=25.92 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEc-CCCCChHHH-HHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 90 LSQYFDECISFIDEAKRQRGGVLVHC-FAGRSRSVT-IVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 90 ~~~~~~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~-v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
.+..+.+--+.|.+++++|+.++|+= ..|+.+-.- .....+....+++.++|..+++..+
T Consensus 516 VQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk 577 (587)
T COG0369 516 VQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELK 577 (587)
T ss_pred HHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 45557777888999999999999955 445444433 2233444556788888887777665
No 119
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=52.40 E-value=17 Score=27.60 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=28.0
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHhCC-CcEEEEc-CCCCChHHHHHHHHHHh
Q 030712 82 VADKEDTNLSQYFDECISFIDEAKRQR-GGVLVHC-FAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC-~~G~~RS~~v~~ayL~~ 132 (173)
+.|.+.-+..+++ ..+++-+.++| ++|+||| ..|.+-.+.-+..||-.
T Consensus 36 lSdGGVHSh~~Hl---~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 36 LSDGGVHSHIDHL---FALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp ESS-SSS--HHHH---HHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred ecCCCccccHHHH---HHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 3566666655555 44555555566 5799999 56887777766666654
No 120
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=51.97 E-value=87 Score=22.86 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=41.9
Q ss_pred CCHHHHHhCCCcEEE-EcCCCCCCCCCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHH
Q 030712 47 SNKDALKSRNITHIL-TVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTI 125 (173)
Q Consensus 47 ~~~~~l~~~gi~~vi-~l~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 125 (173)
-+.+.|+..|++.|+ |+.++. +|+++.. ..+ .+.+++.+....|-+++|-+.+-..|.+.+
T Consensus 18 i~~~~L~~~Gikgvi~DlDNTL------------v~wd~~~---~tp---e~~~W~~e~k~~gi~v~vvSNn~e~RV~~~ 79 (175)
T COG2179 18 ITPDILKAHGIKGVILDLDNTL------------VPWDNPD---ATP---ELRAWLAELKEAGIKVVVVSNNKESRVARA 79 (175)
T ss_pred CCHHHHHHcCCcEEEEeccCce------------ecccCCC---CCH---HHHHHHHHHHhcCCEEEEEeCCCHHHHHhh
Confidence 367899999999776 665543 3443222 112 345677777778889999998877787654
Q ss_pred H
Q 030712 126 V 126 (173)
Q Consensus 126 ~ 126 (173)
+
T Consensus 80 ~ 80 (175)
T COG2179 80 A 80 (175)
T ss_pred h
Confidence 4
No 121
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=51.57 E-value=12 Score=23.41 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=12.3
Q ss_pred cEEEEcCCCCChHHHH
Q 030712 110 GVLVHCFAGRSRSVTI 125 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v 125 (173)
+|++-|.+|.+-|..+
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999766443
No 122
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=51.13 E-value=38 Score=22.40 Aligned_cols=17 Identities=29% Similarity=0.512 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCChHHHH
Q 030712 109 GGVLVHCFAGRSRSVTI 125 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v 125 (173)
++|++.|.+|.|-|-.+
T Consensus 4 kkIllvC~~G~sTSll~ 20 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLV 20 (106)
T ss_pred CEEEEECCCCccHHHHH
Confidence 57999999999877544
No 123
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=50.73 E-value=31 Score=20.88 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHh
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~ 132 (173)
..+.+|+++|..| .|+.. ++..|..
T Consensus 48 ~~~~~vv~~c~~~-~~a~~-~~~~l~~ 72 (89)
T cd00158 48 DKDKPIVVYCRSG-NRSAR-AAKLLRK 72 (89)
T ss_pred CCCCeEEEEeCCC-chHHH-HHHHHHH
Confidence 4678999999997 35533 3444443
No 124
>COG3654 Doc Prophage maintenance system killer protein [General function prediction only]
Probab=50.31 E-value=84 Score=21.86 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEc-CCCCChHHHHHHHHHHhhcC----CCHHHHHHHHHhhC-CCCCCCHhHHHHHHHHH
Q 030712 93 YFDECISFIDEAKRQRGGVLVHC-FAGRSRSVTIVVAYLMKKHG----MSLSQAMGHVKSRR-PQAAPNSGFLLQLQELE 166 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~v~~ayL~~~~~----~~~~~A~~~vr~~r-p~~~~~~~~~~~L~~~~ 166 (173)
.|+.+...+....+ + |+ .+|.-|++..++.......| ++.+++.+.+...- .+-..-..+..+++.+.
T Consensus 53 vfelAA~~~~~l~k-n-----H~F~dgNKRtal~a~~~FL~lNGy~l~a~~d~~~~~~~~la~~~E~d~~~~~~w~R~~~ 126 (132)
T COG3654 53 VFELAAAYFVALIK-N-----HAFADGNKRTALAAALLFLLLNGYELTASQDELVDMIVDLARAGETDEAQLAQWLREHD 126 (132)
T ss_pred HHHHHHHHHHHHHh-c-----CCCCCccHHHHHHHHHHHHHhCCeeeeccHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Confidence 34444444444333 3 56 57888998877766666656 46777777776654 32222334455555555
Q ss_pred HHh
Q 030712 167 KSL 169 (173)
Q Consensus 167 ~~l 169 (173)
+.+
T Consensus 127 ~~~ 129 (132)
T COG3654 127 SYI 129 (132)
T ss_pred hhh
Confidence 544
No 125
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=50.25 E-value=68 Score=20.78 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC---------HHHHHHHHHhhCCCCC----CCHhHHH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS---------LSQAMGHVKSRRPQAA----PNSGFLL 160 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~---------~~~A~~~vr~~rp~~~----~~~~~~~ 160 (173)
++.+.++|+...+.|+++++. +++-+||..-.+..| ...|++ ...+..++++..+... -++++.+
T Consensus 16 ipga~e~l~~L~~~g~~~~~l-TNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~ 93 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFL-TNNSSRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDGLRE 93 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEE-ES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEE-eCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHHHHH
Confidence 566788888888888777765 455578877777777 445764 3445677777544322 2445555
Q ss_pred HHH
Q 030712 161 QLQ 163 (173)
Q Consensus 161 ~L~ 163 (173)
.|.
T Consensus 94 ~l~ 96 (101)
T PF13344_consen 94 ELR 96 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 126
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=50.20 E-value=27 Score=22.77 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=18.4
Q ss_pred HhCCCcEEEEcCCCC-ChHHHHHHHHHHhhcCC
Q 030712 105 KRQRGGVLVHCFAGR-SRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~-~RS~~v~~ayL~~~~~~ 136 (173)
+..+.+|+|+|..|. .||..++ ..| ...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a-~~l-~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA-LKL-AELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH-HHH-HHcCC
Confidence 346789999999885 3554433 333 33455
No 127
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=49.94 E-value=42 Score=27.15 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.0
Q ss_pred HhCCC----cEEEEcCCC
Q 030712 105 KRQRG----GVLVHCFAG 118 (173)
Q Consensus 105 ~~~~~----~VlVHC~~G 118 (173)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34577 799999887
No 128
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=48.90 E-value=44 Score=26.93 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccCCCCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC-------------
Q 030712 4 MDNAYRNQIAAILRVLNLTTCLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA------------- 70 (173)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~------------- 70 (173)
|..-.......+...+.+........+=++..+.=|+++..+ ...+.|...|++.|+-++-.....
T Consensus 205 Y~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~-~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~ 283 (320)
T COG0276 205 YPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTD-DLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYR 283 (320)
T ss_pred hHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHH-HHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHH
Confidence 444444555555555543333333344446667778888766 345778888999888876543211
Q ss_pred ----CCCCeEEEEEeeec
Q 030712 71 ----HPNDFVYKVIGVAD 84 (173)
Q Consensus 71 ----~~~~~~~~~~p~~d 84 (173)
...|.+|.++|..+
T Consensus 284 e~~~~~Gg~~y~rip~lN 301 (320)
T COG0276 284 ELAEEAGGKKYVRIPCLN 301 (320)
T ss_pred HHHHHhCCccEEecCCCC
Confidence 13447788877654
No 129
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=47.26 E-value=45 Score=27.09 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=13.9
Q ss_pred HhCCCcEEEEcCCCCChH
Q 030712 105 KRQRGGVLVHCFAGRSRS 122 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS 122 (173)
+..|..||.||.+|..++
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 346778999999986554
No 130
>PRK13938 phosphoheptose isomerase; Provisional
Probab=46.54 E-value=68 Score=23.76 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhh
Q 030712 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKK 133 (173)
Q Consensus 90 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~ 133 (173)
+.+.+.++.+.+.+.+.++++|++. |.|.|+.++...-...
T Consensus 27 ~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 27 LLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 4455777888888888899899873 4556766665554443
No 131
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=46.06 E-value=24 Score=28.24 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhcccCCCCCeeccCCeEecCcccCCCHHHHHhCCCcEEEEcCCCCCCC-----C-----
Q 030712 2 DQMDNAYRNQIAAILRVLNLTTCLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA-----H----- 71 (173)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~~~~~-----~----- 71 (173)
|-|.+-.....+.+...+....+ ...+=+...+.=|+|+... ...+.|.+.|++.|+-++...-.. +
T Consensus 203 dpY~~~~~~t~~~i~~~l~~~~~--~~~fQS~~g~~~WL~P~~~-~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie 279 (316)
T PF00762_consen 203 DPYPAQCEETARLIAERLGLPEW--RLAFQSRFGPGEWLGPSTE-DVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIE 279 (316)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSSE--EEEEES-SSSS-BSSSBHH-HHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCH
T ss_pred CChHHHHHHHHHHHHHHcCCCce--EEEEECCCCCCCCccccHH-HHHHHHHhcCCCeEEEECCccccccHhHHHHHHHH
Confidence 34666666677777777654321 1233345666778888755 446789999999999886543221 1
Q ss_pred ------CCCe-EEEEEeeecCC
Q 030712 72 ------PNDF-VYKVIGVADKE 86 (173)
Q Consensus 72 ------~~~~-~~~~~p~~d~~ 86 (173)
..|+ ++.++|..+..
T Consensus 280 ~re~~~~~G~~~~~~ip~lN~~ 301 (316)
T PF00762_consen 280 YRELAEEAGGEEFVRIPCLNDS 301 (316)
T ss_dssp HHHHHHHHTCCEEEE---STT-
T ss_pred HHHHHHHcCCceEEEeCCCCCC
Confidence 4456 88888876543
No 132
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=45.64 E-value=92 Score=24.66 Aligned_cols=78 Identities=12% Similarity=0.225 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCC----hHHHHHHHHHHhhcCCC-HHHHHHHHHhhCCC----CCCCHhHHHHHH
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAGRS----RSVTIVVAYLMKKHGMS-LSQAMGHVKSRRPQ----AAPNSGFLLQLQ 163 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~----RS~~v~~ayL~~~~~~~-~~~A~~~vr~~rp~----~~~~~~~~~~L~ 163 (173)
.++++++.+.+.+..|++++.|+..+.. +.+.....|..--..++ ..+........... -...+.+-+.|.
T Consensus 154 ~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~ 233 (283)
T COG2230 154 NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLR 233 (283)
T ss_pred cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHH
Confidence 3677888999999999999999998887 77777777766544454 45555555544321 122335666677
Q ss_pred HHHHHhc
Q 030712 164 ELEKSLQ 170 (173)
Q Consensus 164 ~~~~~l~ 170 (173)
.|...+.
T Consensus 234 ~W~~~f~ 240 (283)
T COG2230 234 LWRERFE 240 (283)
T ss_pred HHHHHHH
Confidence 7665553
No 133
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=45.03 E-value=59 Score=24.36 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHhh
Q 030712 108 RGGVLVHCFAGRSRSVTIVVAYLMKK 133 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~ 133 (173)
.++|+| .|.||||.++=.+-|..
T Consensus 39 ~gkv~V---~G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 39 KGKVFV---TGVGKSGLIGKKFAARL 61 (202)
T ss_pred CCcEEE---EcCChhHHHHHHHHHHH
Confidence 557777 68999999887766654
No 134
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=44.96 E-value=1.6e+02 Score=24.75 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=65.1
Q ss_pred CCeeccCCe------EecCcccCCCHH-------HHHhCCCcEEEEcCCCCCCCC--CCCeEEEEEeeecCCCC------
Q 030712 30 VPFEIEQGL------FLGSIGAASNKD-------ALKSRNITHILTVANALAPAH--PNDFVYKVIGVADKEDT------ 88 (173)
Q Consensus 30 ~~~~I~~~l------~~G~~~~~~~~~-------~l~~~gi~~vi~l~~~~~~~~--~~~~~~~~~p~~d~~~~------ 88 (173)
.|.-|..++ =+|.-+...+.+ ....+|..+|.||+....... ..-++...+|+...+..
T Consensus 51 ~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~ 130 (431)
T PRK13352 51 KPVGIGKGLRTKVNANIGTSSDISDIEEELEKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEA 130 (431)
T ss_pred CeeEEcCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHH
Confidence 455454443 345555555442 234589999999987654221 00001111222111111
Q ss_pred -----ChH-HHHHHHHHHHHHHHhCC-CcEEEEcC----------------CCCChHHHHHHHHHHhhcCC-C----HHH
Q 030712 89 -----NLS-QYFDECISFIDEAKRQR-GGVLVHCF----------------AGRSRSVTIVVAYLMKKHGM-S----LSQ 140 (173)
Q Consensus 89 -----~~~-~~~~~~~~~i~~~~~~~-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~~~-~----~~~ 140 (173)
+.. -.-+++++.|++..++| -=+-|||. .=+||.|++.++|++....- + +++
T Consensus 131 ~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~ 210 (431)
T PRK13352 131 ARKYGSVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDY 210 (431)
T ss_pred HhcCCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHH
Confidence 111 11456778888887776 46788995 33689999999999986543 2 444
Q ss_pred HHHHHHh
Q 030712 141 AMGHVKS 147 (173)
Q Consensus 141 A~~~vr~ 147 (173)
.++..++
T Consensus 211 lLeI~~~ 217 (431)
T PRK13352 211 LLEILKE 217 (431)
T ss_pred HHHHHHH
Confidence 4555554
No 135
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=44.44 E-value=1.7e+02 Score=24.49 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred ecCcccCCCHH-------HHHhCCCcEEEEcCCCCCCCC--CCCeEEEEEeeecCCCC--------ChH-HHHHHHHHHH
Q 030712 40 LGSIGAASNKD-------ALKSRNITHILTVANALAPAH--PNDFVYKVIGVADKEDT--------NLS-QYFDECISFI 101 (173)
Q Consensus 40 ~G~~~~~~~~~-------~l~~~gi~~vi~l~~~~~~~~--~~~~~~~~~p~~d~~~~--------~~~-~~~~~~~~~i 101 (173)
+|.-+...+.+ ....+|..+|.||+....... ..-+....+|+...+.. +.. -..+++++.|
T Consensus 67 IGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~i 146 (423)
T TIGR00190 67 IGTSADTSDIEEEVEKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAI 146 (423)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHH
Confidence 45555555432 233589999999987654220 00011111222211111 111 1245677888
Q ss_pred HHHHhCC-CcEEEEcC----------------CCCChHHHHHHHHHHhhcCC-C----HHHHHHHHHh
Q 030712 102 DEAKRQR-GGVLVHCF----------------AGRSRSVTIVVAYLMKKHGM-S----LSQAMGHVKS 147 (173)
Q Consensus 102 ~~~~~~~-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~~~-~----~~~A~~~vr~ 147 (173)
++..++| -=+-|||. .=+||.|++.++|++....- + +++.++..++
T Consensus 147 e~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~ 214 (423)
T TIGR00190 147 EKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKE 214 (423)
T ss_pred HHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 8887776 46778996 23689999999999986543 2 4444555554
No 136
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=44.33 E-value=20 Score=28.40 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.5
Q ss_pred HhCCCcEEEEcCCCC
Q 030712 105 KRQRGGVLVHCFAGR 119 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~ 119 (173)
+..+++|.+.|..|.
T Consensus 231 i~~~~~vI~yCgsG~ 245 (285)
T COG2897 231 IDPDKEVIVYCGSGV 245 (285)
T ss_pred CCCCCCEEEEcCCch
Confidence 445789999999986
No 137
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=44.30 E-value=22 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChHHHHH
Q 030712 110 GVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (173)
+|++-|.+|.+-|..++
T Consensus 4 kILvvCgsG~~TS~m~~ 20 (94)
T PRK10310 4 KIIVACGGAVATSTMAA 20 (94)
T ss_pred eEEEECCCchhHHHHHH
Confidence 69999999997665543
No 138
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=44.26 E-value=22 Score=23.52 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=32.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHh---hcC-------CCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhcc
Q 030712 109 GGVLVHCFAGRSRSVTIVVAYLMK---KHG-------MSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQG 171 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~---~~~-------~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~ 171 (173)
++|++.|.+|.|-|-.+- -+-. ..| ++..++-+++.+.- -+...|.....+.++++....
T Consensus 2 k~IlLvC~aGmSTSlLV~--Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~D-vvLlGPQv~y~~~~~~~~~~~ 71 (102)
T COG1440 2 KKILLVCAAGMSTSLLVT--KMKKAAESKGKDVTIEAYSETELSEYIDNAD-VVLLGPQVRYMLKQLKEAAEE 71 (102)
T ss_pred ceEEEEecCCCcHHHHHH--HHHHHHHhCCCceEEEEechhHHHHhhhcCC-EEEEChHHHHHHHHHHHHhcc
Confidence 378999999998663321 1111 122 34455555554332 345566666666676665544
No 139
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=44.06 E-value=48 Score=28.63 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcEEEEc-CCCCChHHHHHHHHHHhhcCC
Q 030712 87 DTNLSQYFDECISFIDEAKRQRGGVLVHC-FAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 87 ~~~~~~~~~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~v~~ayL~~~~~~ 136 (173)
.|...+.++.+++.|.++++++++|+|.+ .++-|-++++++.......|.
T Consensus 33 ~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~ 83 (539)
T TIGR00644 33 DPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGV 83 (539)
T ss_pred ChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCC
Confidence 33333447778888888888888888866 355556666666555555554
No 140
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=43.60 E-value=66 Score=26.21 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=12.0
Q ss_pred HhCCCcEEEEcCCCC
Q 030712 105 KRQRGGVLVHCFAGR 119 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~ 119 (173)
+..|..||.||.+|.
T Consensus 144 I~~g~~ILThc~sg~ 158 (344)
T PRK05720 144 IRKGQGILTHCNAGW 158 (344)
T ss_pred ccCCCEEEEecCCCc
Confidence 346778999999985
No 141
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=42.97 E-value=78 Score=24.89 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHH
Q 030712 96 ECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL 130 (173)
Q Consensus 96 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 130 (173)
++++.|.+.+.+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 35667777778889999999999999976665554
No 142
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=42.97 E-value=78 Score=24.89 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHH
Q 030712 96 ECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL 130 (173)
Q Consensus 96 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 130 (173)
++++.|.+.+.+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 35667777778889999999999999976665554
No 143
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=42.24 E-value=1.3e+02 Score=22.61 Aligned_cols=70 Identities=14% Similarity=0.028 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCC--C-------HHHHHHHHHhhCCC----CCCCHhHHH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM--S-------LSQAMGHVKSRRPQ----AAPNSGFLL 160 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~--~-------~~~A~~~vr~~rp~----~~~~~~~~~ 160 (173)
+..+.++|....+.|.++.+...+ .+||..-.+..|....|. + -..+..++++..|. +.-.+++.+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~-~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNN-SSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECC-CCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 556778888888888777775554 468888888888875564 2 34445777765442 222445555
Q ss_pred HHHH
Q 030712 161 QLQE 164 (173)
Q Consensus 161 ~L~~ 164 (173)
.|+.
T Consensus 95 ~l~~ 98 (236)
T TIGR01460 95 SLEG 98 (236)
T ss_pred HHHH
Confidence 5554
No 144
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.78 E-value=85 Score=21.60 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred CeEecCcccCCCHHHHHhCCCcEEEEcCCC
Q 030712 37 GLFLGSIGAASNKDALKSRNITHILTVANA 66 (173)
Q Consensus 37 ~l~~G~~~~~~~~~~l~~~gi~~vi~l~~~ 66 (173)
.+++|+.....+.+.+++.|+..++....+
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~ 115 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGVAEIFGPGTP 115 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCCCEEECCCCC
Confidence 388898777778899999999999977653
No 145
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=41.60 E-value=36 Score=28.10 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+++|+++|..|. ||.. ++..|. ..|.+
T Consensus 341 ~~d~~iVvyC~~G~-rS~~-aa~~L~-~~G~~ 369 (392)
T PRK07878 341 PQDRTIVLYCKTGV-RSAE-ALAALK-KAGFS 369 (392)
T ss_pred CCCCcEEEEcCCCh-HHHH-HHHHHH-HcCCC
Confidence 46789999999884 7644 334443 34553
No 146
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=41.56 E-value=50 Score=29.11 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=17.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
..+++|+++|..|. ||+.+. +++...|.
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~~--~~L~~lG~ 248 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFTY--LVAKALGY 248 (610)
T ss_pred CCCCCEEEECCCCh-HHHHHH--HHHHHcCC
Confidence 45689999999985 665433 23344454
No 147
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=41.45 E-value=83 Score=21.37 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCChHHH
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (173)
.+..+.+.+.+....+.||+|....|.|++..
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 36677778888888889999999999999964
No 148
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=41.36 E-value=33 Score=26.94 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCHHHHHH
Q 030712 117 AGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~~~~~~~A~~ 143 (173)
-|.||||+-..+-|.. |.+.++|.+
T Consensus 165 PG~SRSGaTI~~~lll--G~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLLL--GLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHH
Confidence 5899999877777663 777777753
No 149
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=41.26 E-value=58 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHH
Q 030712 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 91 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (173)
.+.+..+...|-.++..|++|++ |.+| +|.+
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~-cGNG--gSaa 54 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLA-CGNG--GSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-ECCC--cchh
Confidence 34466777777788888999997 5554 5544
No 150
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=40.70 E-value=21 Score=27.85 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.2
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+++|+++|..|. || +.++.+|. ..|.+
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~~~~l~-~~G~~ 257 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVVVLALA-TLDVP 257 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHHH-HcCCC
Confidence 35679999999985 55 44444443 44553
No 151
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.53 E-value=23 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 030712 110 GVLVHCFAGRSRSVTIVVAYLM 131 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v~~ayL~ 131 (173)
+|++.|.+| -|.++++--+-
T Consensus 2 ~Ill~C~~G--aSSs~la~km~ 21 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALN 21 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHH
Confidence 589999777 55565554444
No 152
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=39.95 E-value=35 Score=27.24 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=17.2
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
..+++|+++|..|. |+ ++++..| ...|.
T Consensus 267 ~~~~~iv~yC~sG~-~A-~~~~~~L-~~~G~ 294 (320)
T PLN02723 267 SLDSPIVASCGTGV-TA-CILALGL-HRLGK 294 (320)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHH-HHcCC
Confidence 45679999999875 54 3333333 34454
No 153
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.81 E-value=22 Score=27.43 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=31.3
Q ss_pred CeEecCcccCCC-HHHHHhCCCcEEEEcCCCCCCC---------CCCCeEEEEEee
Q 030712 37 GLFLGSIGAASN-KDALKSRNITHILTVANALAPA---------HPNDFVYKVIGV 82 (173)
Q Consensus 37 ~l~~G~~~~~~~-~~~l~~~gi~~vi~l~~~~~~~---------~~~~~~~~~~p~ 82 (173)
.+..|...+..+ .++++++||+.|||.+.+.... -..++-|+++--
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 378888844443 3677889999999999875332 156666666543
No 154
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=39.70 E-value=29 Score=28.42 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=34.2
Q ss_pred EEEEcCCCCCCCC---CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCChHHHHHHHHHHhhc
Q 030712 59 HILTVANALAPAH---PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR-QRGGVLVHCFAGRSRSVTIVVAYLMKKH 134 (173)
Q Consensus 59 ~vi~l~~~~~~~~---~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~v~~ayL~~~~ 134 (173)
.+||+++..+... +.+....++|+.+.... .+.+.+... ...+|+|||..|. ||.. ++..|.. .
T Consensus 288 ~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~---------~~~~~~l~~~~~~~Ivv~C~sG~-RS~~-Aa~~L~~-~ 355 (370)
T PRK05600 288 TLLDVREPHEVLLKDLPEGGASLKLPLSAITDD---------ADILHALSPIDGDNVVVYCASGI-RSAD-FIEKYSH-L 355 (370)
T ss_pred EEEECCCHHHhhhccCCCCCccEeCcHHHhhcc---------hhhhhhccccCCCcEEEECCCCh-hHHH-HHHHHHH-c
Confidence 6889988766331 11123556666543211 011111111 2238999999994 8865 4445543 3
Q ss_pred CC
Q 030712 135 GM 136 (173)
Q Consensus 135 ~~ 136 (173)
|+
T Consensus 356 G~ 357 (370)
T PRK05600 356 GH 357 (370)
T ss_pred CC
Confidence 44
No 155
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.67 E-value=1.8e+02 Score=23.46 Aligned_cols=73 Identities=8% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHHhCCCcEEEEcCCCCCCC-----------CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 50 DALKSRNITHILTVANALAPA-----------HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 50 ~~l~~~gi~~vi~l~~~~~~~-----------~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
+..++.|....+++....... ...|. ..+-+.|..-.-....+...+..+.+.+...-+|-+||.+.
T Consensus 121 ~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga--~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnn 198 (333)
T TIGR03217 121 GMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGA--DCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHN 198 (333)
T ss_pred HHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCC--CEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCC
Confidence 445566766666664432211 02222 23445555444344446667777776665456899999865
Q ss_pred CChHHH
Q 030712 119 RSRSVT 124 (173)
Q Consensus 119 ~~RS~~ 124 (173)
.|-+.+
T Consensus 199 lGla~A 204 (333)
T TIGR03217 199 LSLAVA 204 (333)
T ss_pred CchHHH
Confidence 554433
No 156
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.80 E-value=61 Score=23.21 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHHH--hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 96 ECISFIDEAK--RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 96 ~~~~~i~~~~--~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+.+++.+.. ..+.+|+|-|-.|.|=.=++++|-.+...|+.
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~ 54 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN 54 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 4556777777 56789999999998777444444444444653
No 157
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=38.78 E-value=1.7e+02 Score=25.84 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEE-EcCCCCChHHHHHHHHHH----hhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 030712 91 SQYFDECISFIDEAKRQRGGVLV-HCFAGRSRSVTIVVAYLM----KKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQEL 165 (173)
Q Consensus 91 ~~~~~~~~~~i~~~~~~~~~VlV-HC~~G~~RS~~v~~ayL~----~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~ 165 (173)
.+.+.++...|.+++-+|.||+| |=+.+-|-++.+++-+-+ ...+-+ .+|..++-.+||+-.|--.+....+.+
T Consensus 326 ~p~m~~vAk~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d-~DAeyh~~KRrPskAPfYeleDvtrDl 404 (715)
T COG1107 326 KPDMVDVAKEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPD-EDAEYHLFKRRPSKAPFYELEDVTRDL 404 (715)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEecccCcccccchhhHHHHHHHHHHHhCCC-hhhhhHHhhcCcccCCceeHHhhhhhH
Confidence 34466777888888888999887 556677777777765543 333334 667777778899888876666555444
Q ss_pred H
Q 030712 166 E 166 (173)
Q Consensus 166 ~ 166 (173)
.
T Consensus 405 ~ 405 (715)
T COG1107 405 N 405 (715)
T ss_pred H
Confidence 3
No 158
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=38.58 E-value=55 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+.+|+++|..|. ||..++ +.+...|.+
T Consensus 77 ~~~~iv~yc~~g~-~s~~~~--~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVLL--LALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHH-HHHHHH--HHHHHcCCC
Confidence 5679999999874 665533 333444553
No 159
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=37.97 E-value=87 Score=25.67 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=9.2
Q ss_pred CCCcEEEEcCCCC
Q 030712 107 QRGGVLVHCFAGR 119 (173)
Q Consensus 107 ~~~~VlVHC~~G~ 119 (173)
.|. ||.||.+|.
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 454 999998864
No 160
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=37.82 E-value=78 Score=17.88 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 118 GRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 118 G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
|.+|...-++.-|+. .|++|+.-...|++.|
T Consensus 18 gLd~etL~ici~L~e-~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRETLSICIELCE-NGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHHHHHHHHHHHH-CCCCHHHHHHHHHHhC
Confidence 788986666666665 4899887667777654
No 161
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=37.78 E-value=40 Score=25.05 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhh
Q 030712 126 VVAYLMKKHGMSLSQAMGHVKSR 148 (173)
Q Consensus 126 ~~ayL~~~~~~~~~~A~~~vr~~ 148 (173)
+=+.||...|++-++|++++|..
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 44678999999999999999986
No 162
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.72 E-value=30 Score=22.36 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=10.8
Q ss_pred cEEEEcCCCCChH
Q 030712 110 GVLVHCFAGRSRS 122 (173)
Q Consensus 110 ~VlVHC~~G~~RS 122 (173)
+||+.|.+|.+-|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4899999999655
No 163
>PRK13936 phosphoheptose isomerase; Provisional
Probab=37.57 E-value=1.3e+02 Score=22.07 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 127 (173)
+.+..+++.+.+.+.++++|++. |.|.|+.+|.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~ 59 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHH
Confidence 34667777788888889899885 5566665553
No 164
>PRK10425 DNase TatD; Provisional
Probab=37.50 E-value=1e+02 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCh
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSR 121 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~R 121 (173)
.+-+...++-+.+.+.||.|||......
T Consensus 107 ~~vF~~ql~lA~~~~~Pv~iH~r~a~~~ 134 (258)
T PRK10425 107 ERAFVAQLAIAAELNMPVFMHCRDAHER 134 (258)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCchHH
Confidence 3444555555555677888888755433
No 165
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.28 E-value=2e+02 Score=22.35 Aligned_cols=98 Identities=7% Similarity=0.029 Sum_probs=56.7
Q ss_pred HHHHhCCCcEEEEcCCCCCCC--C---------CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 50 DALKSRNITHILTVANALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 50 ~~l~~~gi~~vi~l~~~~~~~--~---------~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
+..++.|....+++....... + ..+.. .+.+.|..-......+...+..+.+....+-++-+||.+-
T Consensus 116 ~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~ 193 (266)
T cd07944 116 KAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPD--VFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNN 193 (266)
T ss_pred HHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCC--EEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 456678888777775433222 0 23333 3455565433333446666777766554447999999987
Q ss_pred CChHHHHHHHHHHhh---------------cCCCHHHHHHHHHhhC
Q 030712 119 RSRSVTIVVAYLMKK---------------HGMSLSQAMGHVKSRR 149 (173)
Q Consensus 119 ~~RS~~v~~ayL~~~---------------~~~~~~~A~~~vr~~r 149 (173)
.|-+.+-+++.+-.- .+.+.++.+..++...
T Consensus 194 ~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~ 239 (266)
T cd07944 194 LQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF 239 (266)
T ss_pred ccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh
Confidence 766655444443321 1246777777777663
No 166
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=35.95 E-value=47 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=13.6
Q ss_pred HhCCCcEEEEcCCCCChHHH
Q 030712 105 KRQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~ 124 (173)
+..+++|+++|..|. |+..
T Consensus 48 ~~~~~~vvl~c~~g~-~a~~ 66 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGYI 66 (90)
T ss_pred cCCCCcEEEEcCCCh-hHHH
Confidence 355679999999873 5543
No 167
>PRK10812 putative DNAse; Provisional
Probab=35.75 E-value=1.2e+02 Score=23.51 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCh
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSR 121 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~R 121 (173)
.+-+-..++-+.+.+.||.+||..+...
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~~~ 137 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDARAD 137 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH
Confidence 3344455555555678888888876543
No 168
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=34.82 E-value=63 Score=27.47 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
..+++++++|..|. ||..+ +.+|.. .|.
T Consensus 447 ~~~~~iivyC~~G~-rS~~a-a~~L~~-~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQ-ALYLRE-QGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHHHH-HHHHHH-cCC
Confidence 45679999999995 77554 444443 344
No 169
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=68 Score=21.04 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 95 DECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
+.++++|.+...+-+||+.|=+.|
T Consensus 11 ~aAl~Li~~l~~~hgpvmFHQSGG 34 (116)
T COG3564 11 PAALDLIAELQAEHGPVMFHQSGG 34 (116)
T ss_pred HHHHHHHHHHHHhcCCEEEeccCC
Confidence 456788888888888999995554
No 170
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=33.39 E-value=47 Score=24.32 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.6
Q ss_pred cEEEEc-CCCCChHHHHHHHHHHhhcCCC
Q 030712 110 GVLVHC-FAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 110 ~VlVHC-~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
=+.||. ..|.||++=+.+-+++...|.+
T Consensus 119 f~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 119 LVAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred HheecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 377899 7899999998888888877865
No 171
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=33.30 E-value=1.3e+02 Score=20.53 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCHHHH---HHHHHhhCCCCCCCHhHHHHHHHHHHHhccC
Q 030712 136 MSLSQA---MGHVKSRRPQAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 136 ~~~~~A---~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
-++..| ++.+.+..| +.....++..|.+|.-.+-.+
T Consensus 66 ~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred ccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCC
Confidence 344555 455666777 777899999999997766543
No 172
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=33.03 E-value=77 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCChH
Q 030712 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRS 122 (173)
Q Consensus 91 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 122 (173)
....+-+.+.++-+.+-+.||.|||....++.
T Consensus 107 ~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~ 138 (255)
T PF01026_consen 107 EVQEEVFERQLELAKELNLPVSIHCRKAHEEL 138 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEecCCcHHHH
Confidence 33344455555555556778888888754444
No 173
>PRK05568 flavodoxin; Provisional
Probab=32.63 E-value=1.6e+02 Score=19.93 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=55.2
Q ss_pred HHHhCCCc-EEEEcCCCCCCC-CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCC-hHHHHHH
Q 030712 51 ALKSRNIT-HILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS-RSVTIVV 127 (173)
Q Consensus 51 ~l~~~gi~-~vi~l~~~~~~~-~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~-RS~~v~~ 127 (173)
.+...|+. .++++....... ...+.-.+..|.-....+.. ..+..+++.+... .+++++.+.|+.|.+ ..+.-.+
T Consensus 25 ~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~-~~~~~f~~~~~~~-~~~k~~~~f~t~G~~~~~~~~~~ 102 (142)
T PRK05568 25 GAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEE-GEMEPFVESISSL-VKGKKLVLFGSYGWGDGEWMRDW 102 (142)
T ss_pred HHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccc-hhHHHHHHHhhhh-hCCCEEEEEEccCCCCChHHHHH
Confidence 34556664 445665433211 13344445555543332110 1123333333222 357899999988764 3222222
Q ss_pred HHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhc
Q 030712 128 AYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (173)
Q Consensus 128 ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~ 170 (173)
.-.+...|+.....- + +-...|++.-++...+|.+.+-
T Consensus 103 ~~~l~~~g~~~~~~~--~---~~~~~p~~~~l~~~~~~g~~l~ 140 (142)
T PRK05568 103 VERMEGYGANLVNEG--L---IVNNTPEGEGIEKCKALGEALA 140 (142)
T ss_pred HHHHHHCCCEEeCCc--E---EEecCCCHHHHHHHHHHHHHHH
Confidence 233344454422210 1 1123688899999999988764
No 174
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.58 E-value=2.4e+02 Score=22.75 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=39.8
Q ss_pred HHHHhCCCcEEEEcCCCCCCC--C---------CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 50 DALKSRNITHILTVANALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 50 ~~l~~~gi~~vi~l~~~~~~~--~---------~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
+..++.|....+++....... + ..|.. .+-+.|..-......+...+..+.+.+..+.+|-+||.+.
T Consensus 122 ~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnn 199 (337)
T PRK08195 122 GLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQ--CVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNN 199 (337)
T ss_pred HHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCC--EEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 345566766666664432211 0 22222 3445555444344446666777776664456899999865
Q ss_pred CChHHH
Q 030712 119 RSRSVT 124 (173)
Q Consensus 119 ~~RS~~ 124 (173)
.|-+.+
T Consensus 200 lGla~A 205 (337)
T PRK08195 200 LGLGVA 205 (337)
T ss_pred cchHHH
Confidence 554433
No 175
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=32.41 E-value=82 Score=24.34 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH---HHHHHhhcCCCH
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV---VAYLMKKHGMSL 138 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~---~ayL~~~~~~~~ 138 (173)
+.+..+++.+.+.+.++++|++ |-+| -||.++ +..+...+|.++
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~-~GaG--tSg~la~~da~e~~~tfg~~~ 79 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIY-VGAG--TSGRLGVLDASELPPTFGTPP 79 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE-EcCc--HHHHHHHHHHHhccccccCCc
Confidence 3466777777778888877665 4333 455444 345555556543
No 176
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.96 E-value=1.5e+02 Score=19.26 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=32.3
Q ss_pred HhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHh
Q 030712 131 MKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (173)
Q Consensus 131 ~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l 169 (173)
....|+++.++...+........+.......|.+..+.+
T Consensus 54 lr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (99)
T cd04765 54 LYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAEL 92 (99)
T ss_pred HHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 345799999999999988877888888888888877654
No 177
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=31.72 E-value=2e+02 Score=22.71 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLS 139 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~ 139 (173)
+..+++.+.+.++++++|++.=.++.||-+..-+.-+...+|.+++
T Consensus 43 I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~ 88 (291)
T TIGR00274 43 IAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPE 88 (291)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHH
Confidence 5566666667777787777643333333233333334445565543
No 178
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=31.56 E-value=1.5e+02 Score=19.20 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRS 122 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 122 (173)
+..+.+.+..+...|-++.+||. +.+-+
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~-~~~i~ 59 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM-ESGIG 59 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS-SSHHH
T ss_pred HHHHHHHHHHHHHhCCCEEecCC-CCcHH
Confidence 56677788888888999999997 54333
No 179
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=30.87 E-value=1.6e+02 Score=22.03 Aligned_cols=29 Identities=24% Similarity=0.062 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRS 122 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 122 (173)
+..+.+.++.+...|-++.+||..+.+.+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~i~ 210 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESSIG 210 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCHHH
Confidence 34456666667778899999998664444
No 180
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=30.75 E-value=62 Score=20.14 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.2
Q ss_pred cEEEEcCCCCChHHHHH
Q 030712 110 GVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (173)
+|++-|.+|.|-|-.+.
T Consensus 2 ~ilivC~~G~~tS~~l~ 18 (89)
T cd05566 2 KILVACGTGVATSTVVA 18 (89)
T ss_pred EEEEECCCCccHHHHHH
Confidence 68999999998764443
No 181
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=30.58 E-value=70 Score=20.44 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCChHHHH
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGRSRSVTI 125 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS~~v 125 (173)
.+++..++..+++|+|++.+|..-.|.+
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 3566777777889999999997665554
No 182
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=30.54 E-value=1e+02 Score=18.00 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=19.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 125 IVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 125 v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
.|+--+....|++..+|++.+++..
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcC
Confidence 4556666778999999999998654
No 183
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.19 E-value=1.5e+02 Score=21.78 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEE
Q 030712 91 SQYFDECISFIDEAKRQRGGVLVH 114 (173)
Q Consensus 91 ~~~~~~~~~~i~~~~~~~~~VlVH 114 (173)
.+.+.++++.|.+.+.++++|++.
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~ 50 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC 50 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE
Confidence 355888999999999999888874
No 184
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=30.00 E-value=1.3e+02 Score=22.77 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHH----hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCCHHHHHH
Q 030712 89 NLSQYFDECISFIDEAK----RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (173)
Q Consensus 89 ~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~ 143 (173)
++...+..+..+.++.+ .+|+.|+|+|.+..-|+ +++...|.+.++...
T Consensus 133 sL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~------i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 133 SLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRA------IVKHLEGISDEAIKE 185 (214)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHH------HHHHHhcCCHhhhhh
Confidence 34444455555555444 46899999988744343 556666888665543
No 185
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.90 E-value=1.1e+02 Score=24.22 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
+.+..+++.+.+.+.+|++|++.=.++.+|-+..-+.-+...++.+
T Consensus 42 ~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~ 87 (296)
T PRK12570 42 PQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVS 87 (296)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCC
Confidence 3456667777777788888766433333343343344444344444
No 186
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=29.80 E-value=57 Score=19.38 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.5
Q ss_pred cEEEEcCCCCChHHHHH
Q 030712 110 GVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (173)
+|++-|.+|.+-|..+.
T Consensus 1 ~il~vc~~G~~~s~~l~ 17 (84)
T cd00133 1 KILVVCGSGIGSSSMLA 17 (84)
T ss_pred CEEEECCCcHhHHHHHH
Confidence 47889999987665544
No 187
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=29.72 E-value=1.2e+02 Score=23.61 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=17.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
..+.+|+|+|..|. ++++.+ ++++...|.+
T Consensus 85 ~~d~~VVvyc~~~~-~~a~~~-~~~l~~~G~~ 114 (281)
T PRK11493 85 NQDKHLVVYDEGNL-FSAPRA-WWMLRTFGVE 114 (281)
T ss_pred CCCCEEEEECCCCC-chHHHH-HHHHHHhcCC
Confidence 45679999998764 443333 3334444543
No 188
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=29.61 E-value=1.3e+02 Score=22.26 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCChH-HHHHHHHHHh
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGRSRS-VTIVVAYLMK 132 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS-~~v~~ayL~~ 132 (173)
.+++.+....+++|+|-|-.|.|=. |.+++.+|..
T Consensus 35 a~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~ 70 (205)
T TIGR00197 35 AQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKG 70 (205)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHh
Confidence 3444443334679999999887766 5666666654
No 189
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=29.49 E-value=1.2e+02 Score=17.62 Aligned_cols=50 Identities=8% Similarity=0.166 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhccC
Q 030712 119 RSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 119 ~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
.+.+|+.+.-.+ ..+.++++..+.+.+.. .+.+. ...+.+..|=..|.++
T Consensus 15 Ln~~a~~Iw~~~--~g~~t~~ei~~~l~~~y-~~~~~-~~~~dv~~fl~~L~~~ 64 (68)
T PF05402_consen 15 LNETAAFIWELL--DGPRTVEEIVDALAEEY-DVDPE-EAEEDVEEFLEQLREK 64 (68)
T ss_dssp --THHHHHHHH----SSS-HHHHHHHHHHHT-T--HH-HHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHc--cCCCCHHHHHHHHHHHc-CCCHH-HHHHHHHHHHHHHHHC
Confidence 455555544433 34688888888888887 34443 3466666665555543
No 190
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=29.02 E-value=66 Score=22.79 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=25.3
Q ss_pred CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q 030712 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS 120 (173)
Q Consensus 72 ~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 120 (173)
.-+.-++..|+-....+.... .|+++..-.|+.|...|+.|.+
T Consensus 73 ~YD~I~lG~PvW~~~~~~pv~------tFL~~~~~~gK~v~~F~T~ggs 115 (156)
T PF12682_consen 73 DYDTIFLGTPVWWGTPPPPVR------TFLEQYDFSGKTVIPFCTSGGS 115 (156)
T ss_dssp G-SEEEEEEEEETTEE-CHHH------HHHHCTTTTTSEEEEEEE-SS-
T ss_pred cCCEEEEechHHcCCCCHHHH------HHHHhcCCCCCcEEEEEeeCCC
Confidence 344567888887655443332 3444444468899999988754
No 191
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.01 E-value=48 Score=22.75 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH-hCCCcEEEEcCCCCCh
Q 030712 94 FDECISFIDEAK-RQRGGVLVHCFAGRSR 121 (173)
Q Consensus 94 ~~~~~~~i~~~~-~~~~~VlVHC~~G~~R 121 (173)
+..+++.+.... -..++++|||+...+-
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 445555554431 1245999999987653
No 192
>PRK02947 hypothetical protein; Provisional
Probab=28.97 E-value=1.4e+02 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (173)
+.++++.+.+.+.+.++++|++. |.|-|+.++
T Consensus 24 e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 24 EAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 44788888888888888899875 444555544
No 193
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=28.88 E-value=3e+02 Score=21.88 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChH--HHHHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRS--VTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS--~~v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
=+.+++.++.++..+.|+++.+.+|--|= +.+.+.-|.+ ...|+..+++.+
T Consensus 143 Geki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMak-----tsaAl~~l~ea~ 195 (294)
T COG0777 143 GEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAK-----TSAALKRLSEAG 195 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHH-----HHHHHHHHHhcC
Confidence 35678999999999999999999997775 3333322222 466777777754
No 194
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=28.88 E-value=1.4e+02 Score=20.76 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=16.2
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHh
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~ 132 (173)
..+.+|+|+|..| .+| ..++..|..
T Consensus 47 ~~~~~vVv~c~~g-~~a-~~aa~~L~~ 71 (145)
T cd01535 47 PAAERYVLTCGSS-LLA-RFAAADLAA 71 (145)
T ss_pred CCCCCEEEEeCCC-hHH-HHHHHHHHH
Confidence 3467999999986 344 444555543
No 195
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=28.82 E-value=77 Score=23.55 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCChHHHHHHH
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGRSRSVTIVVA 128 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 128 (173)
.+.|.+.+..+++|.|+.++|.+=|..++++
T Consensus 7 ~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~ 37 (255)
T PF00733_consen 7 EEAVARRLRSDKPIGILLSGGLDSSAIAALA 37 (255)
T ss_dssp HHHHHHHCGCTSEEEEE--SSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCChhHHHHHHHH
Confidence 4556666667889999999998755444333
No 196
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=28.52 E-value=1.5e+02 Score=24.77 Aligned_cols=109 Identities=10% Similarity=0.159 Sum_probs=52.6
Q ss_pred EecCcccCCCH----H---HHHhCCCcEEEEcCCCCCCCC-------CCCeEEEEEeeecCC----CCChHHHHHHHHHH
Q 030712 39 FLGSIGAASNK----D---ALKSRNITHILTVANALAPAH-------PNDFVYKVIGVADKE----DTNLSQYFDECISF 100 (173)
Q Consensus 39 ~~G~~~~~~~~----~---~l~~~gi~~vi~l~~~~~~~~-------~~~~~~~~~p~~d~~----~~~~~~~~~~~~~~ 100 (173)
=+|..+...+. + ...++|-.+|.||+....... ...+-.-.+|+-... .....-..+++++.
T Consensus 65 NIGtS~~~~d~~~E~~K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ 144 (420)
T PF01964_consen 65 NIGTSSDYSDIEEELEKLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDV 144 (420)
T ss_dssp EE--------HHHHHHHHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHH
T ss_pred eecCCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHH
Confidence 35666665543 2 234589999999987654320 223333344442211 11112225678888
Q ss_pred HHHHHhCC-CcEEEEcC----------------CCCChHHHHHHHHHHhhcCC-----CHHHHHHHHHh
Q 030712 101 IDEAKRQR-GGVLVHCF----------------AGRSRSVTIVVAYLMKKHGM-----SLSQAMGHVKS 147 (173)
Q Consensus 101 i~~~~~~~-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~~~-----~~~~A~~~vr~ 147 (173)
|++..++| -=+-|||. .=+||.|++.++|++....- .+++.++..++
T Consensus 145 ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~ 213 (420)
T PF01964_consen 145 IEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKE 213 (420)
T ss_dssp HHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTT
T ss_pred HHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHH
Confidence 88888776 56789996 34689999999999987543 25555555555
No 197
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=28.31 E-value=1.5e+02 Score=22.05 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q 030712 95 DECISFIDEAKRQRGGVLVHCFAGR 119 (173)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (173)
+.+...++.+.+.+.+|.+||....
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~~ 132 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDAE 132 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCcc
Confidence 3344445556667899999997543
No 198
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.28 E-value=2.6e+02 Score=21.06 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHHHhCCCcEEEEcCCC---CCCCC---CCCeEEEEEeeecCC---C-CChHHHHHHHHHHHHHHHhCCCcEEEEcCC
Q 030712 49 KDALKSRNITHILTVANA---LAPAH---PNDFVYKVIGVADKE---D-TNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (173)
Q Consensus 49 ~~~l~~~gi~~vi~l~~~---~~~~~---~~~~~~~~~p~~d~~---~-~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 117 (173)
.+.|++.|+..|++-... .+... ..+..|.++==.+.. . .-....++.+.+.|..+..+++.|+|-..+
T Consensus 135 ~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 135 FELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 568889999999876655 22221 235555554222111 0 012345888999999988888888887665
No 199
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=28.14 E-value=71 Score=20.65 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=23.3
Q ss_pred EEEcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 112 LVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 112 lVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
..||.+- |.+|-+ +.++|...+++..+|++.+.+.-
T Consensus 54 ~~~Cf~C-g~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFGC-GKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETTT---EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECCC-CCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 6789853 455554 55667778999999999997765
No 200
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.10 E-value=91 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhCCCc--EEEEcCCCC
Q 030712 94 FDECISFIDEAKRQRGG--VLVHCFAGR 119 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~--VlVHC~~G~ 119 (173)
+..+++.++ +.|.+ +|.||.++.
T Consensus 162 i~~av~~~r---~~g~~~i~LLhC~s~Y 186 (347)
T COG2089 162 IEEAVAILR---ENGNPDIALLHCTSAY 186 (347)
T ss_pred HHHHHHHHH---hcCCCCeEEEEecCCC
Confidence 445555544 45555 999999543
No 201
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=28.01 E-value=1e+02 Score=26.37 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=35.3
Q ss_pred EEEEEee-ecCCCCChHHHHHHHHHHHHHHHhCC-CcEEEEc-CCCCChHHHHHHHHHHh
Q 030712 76 VYKVIGV-ADKEDTNLSQYFDECISFIDEAKRQR-GGVLVHC-FAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 76 ~~~~~p~-~d~~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC-~~G~~RS~~v~~ayL~~ 132 (173)
..|-+.+ +|+...+..++ +...++.+.++| +.|++|| .+|..-.+.-+..||-.
T Consensus 110 ~lHlmGl~S~GGVHSh~~H---l~ali~~a~k~g~~kV~~H~f~DGRD~~P~s~~~~le~ 166 (509)
T COG0696 110 ALHLMGLVSDGGVHSHIDH---LLALIELAAKNGMKKVYLHAFLDGRDTAPRSALQYLEE 166 (509)
T ss_pred eEEEEecccCCcccchHHH---HHHHHHHHHhcCCcEEEEEEecCCCCCCchhHHHHHHH
Confidence 3444444 45555555444 466677777776 6999999 56877777777666654
No 202
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=27.88 E-value=2e+02 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhccCC
Q 030712 136 MSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQGRT 173 (173)
Q Consensus 136 ~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~~ 173 (173)
++..+.+++...+. ++-....++..+++|++.+..||
T Consensus 378 ~p~gavw~~~c~~~-~vp~~~~w~~~v~~ye~~vl~~r 414 (414)
T TIGR01748 378 LPFGAVWEMYCERH-GVPVGSEWLESVKAYEKEVLLKR 414 (414)
T ss_pred CChHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHhhcC
Confidence 45555566666665 56677899999999999988876
No 203
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=27.66 E-value=1.6e+02 Score=23.51 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCC-h------H-HHHHHHHHHhhc--------CCCHHHHHHHHHhhC
Q 030712 96 ECISFIDEAKRQRGGVLVHCFAGRS-R------S-VTIVVAYLMKKH--------GMSLSQAMGHVKSRR 149 (173)
Q Consensus 96 ~~~~~i~~~~~~~~~VlVHC~~G~~-R------S-~~v~~ayL~~~~--------~~~~~~A~~~vr~~r 149 (173)
.+.+.++.+.+.|.+|.|||....= . + ....+..+...+ .++-.++++.+++.+
T Consensus 114 ~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak 183 (335)
T cd01294 114 KIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCN 183 (335)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCC
Confidence 3445555555678899999987421 0 0 112233344322 367888999998766
No 204
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.52 E-value=2.7e+02 Score=20.97 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=55.7
Q ss_pred HHHHhCCCcEEEEcCCCCC--CC-----------CCCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcC
Q 030712 50 DALKSRNITHILTVANALA--PA-----------HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCF 116 (173)
Q Consensus 50 ~~l~~~gi~~vi~l~~~~~--~~-----------~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 116 (173)
+.+++.|+...+++..... .. ...|...+. +.|..-......+..+++.+.+.... .++-+||.
T Consensus 122 ~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~H 198 (265)
T cd03174 122 EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS--LKDTVGLATPEEVAELVKALREALPD-VPLGLHTH 198 (265)
T ss_pred HHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--echhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeC
Confidence 4567899999998843332 11 134444444 44443333334466677777666543 69999998
Q ss_pred CCCChHHHHHHHHHHhh---------------cCCCHHHHHHHHHhhC
Q 030712 117 AGRSRSVTIVVAYLMKK---------------HGMSLSQAMGHVKSRR 149 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~---------------~~~~~~~A~~~vr~~r 149 (173)
+-.|-+.+-+++.+..- .+.+.++.+..++...
T Consensus 199 n~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 199 NTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred CCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcC
Confidence 86555433333332211 2347788788887764
No 205
>PRK06242 flavodoxin; Provisional
Probab=27.52 E-value=1.4e+02 Score=20.33 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCCChHH-HHHHHHHHhhcCCCHHHHHHH--------HH--hhCCCCCCCHhHHHHHHHHHHHhccC
Q 030712 107 QRGGVLVHCFAGRSRSV-TIVVAYLMKKHGMSLSQAMGH--------VK--SRRPQAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~-~v~~ayL~~~~~~~~~~A~~~--------vr--~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
.++++.+.|+.|.+-.. .-.+...+...|+.....+.. +. .......|++.-.+.+.+|.+++-.|
T Consensus 73 ~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 73 SGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVGEFSCKGFDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred cCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEEEEecCCcccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 57899999988764322 222233333445443221100 00 01113478888899999998887654
No 206
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=27.38 E-value=72 Score=19.67 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=12.9
Q ss_pred cEEEEcCCCCChHHHHH
Q 030712 110 GVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (173)
+++|-|.+|.|-|..+.
T Consensus 1 kilvvC~~G~~tS~ll~ 17 (86)
T cd05563 1 KILAVCGSGLGSSLMLK 17 (86)
T ss_pred CEEEECCCCccHHHHHH
Confidence 47899999998765544
No 207
>PHA03338 US22 family homolog; Provisional
Probab=27.26 E-value=69 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=27.2
Q ss_pred EEcCCCCChHHHHHHHHHHh-hcCCCHHHHHHHHHhhCC
Q 030712 113 VHCFAGRSRSVTIVVAYLMK-KHGMSLSQAMGHVKSRRP 150 (173)
Q Consensus 113 VHC~~G~~RS~~v~~ayL~~-~~~~~~~~A~~~vr~~rp 150 (173)
+||.+|.+-||.+.--+.+. ..+.+++....+|...+.
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HG 199 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHG 199 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccC
Confidence 59999999998777655443 456777777777766653
No 208
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.15 E-value=71 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCCC
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGR 119 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~ 119 (173)
.+.-.+.+..|..||.||.+|.
T Consensus 127 ~~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 127 GEYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHHcCCCCEEEEeCCCCc
Confidence 3344444557889999998875
No 209
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.70 E-value=1.6e+02 Score=24.11 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=18.3
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC
Q 030712 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 136 (173)
..+.+|+++|..|. ||.. ++..| ...|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-aa~~L-~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-AAATL-RELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-HHHHH-HHcCC
Confidence 45789999999884 7754 33333 34454
No 210
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.56 E-value=1e+02 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=17.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Q 030712 86 EDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGR 119 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (173)
+-..+.+ ++.+++++.+... ..-++.||.++.
T Consensus 121 G~stl~E-I~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 121 GMSTLEE-IERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp TT--HHH-HHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred CCCCHHH-HHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 3334444 7778888854433 458999999653
No 211
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=26.43 E-value=2.7e+02 Score=20.63 Aligned_cols=52 Identities=15% Similarity=0.031 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC-----CChHHHHHHHHHHhhcCCCHHHHHHHHH
Q 030712 95 DECISFIDEAKRQRGGVLVHCFAG-----RSRSVTIVVAYLMKKHGMSLSQAMGHVK 146 (173)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G-----~~RS~~v~~ayL~~~~~~~~~~A~~~vr 146 (173)
..-...+.+..+.|-++.+-.-.+ .+......+..++...|+++++|++.+-
T Consensus 223 ~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T 279 (304)
T PF13147_consen 223 REDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAAT 279 (304)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHT
T ss_pred hhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHH
Confidence 334566677777888888877554 4455566666666668999999998764
No 212
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=26.43 E-value=63 Score=20.93 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCChHHHHHH
Q 030712 109 GGVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ 127 (173)
.+||+-|-+|.|-|..+..
T Consensus 2 ~KIL~aCG~GvgSS~~ik~ 20 (93)
T COG3414 2 IKILAACGNGVGSSTMIKM 20 (93)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 3799999999998866443
No 213
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.05 E-value=74 Score=22.16 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCChHHHHHHH
Q 030712 109 GGVLVHCFAGRSRSVTIVVA 128 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~a 128 (173)
.+||+-|.+...||++.-+.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~ 22 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERL 22 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHH
Confidence 47999999999999875443
No 214
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=49 Score=26.76 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCC----ChHHHHHHHHHHhhcC
Q 030712 107 QRGGVLVHCFAGR----SRSVTIVVAYLMKKHG 135 (173)
Q Consensus 107 ~~~~VlVHC~~G~----~RS~~v~~ayL~~~~~ 135 (173)
++..||-||.+|. +-..++...+..+..|
T Consensus 149 ~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 149 DGDTVLTHCNAGALATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred cCCeEEeeecCCceeecCccchHHHHHHHHHCC
Confidence 5678999999873 1112444445555544
No 215
>PRK01076 L-rhamnose isomerase; Provisional
Probab=25.76 E-value=2.2e+02 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhccCC
Q 030712 137 SLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQGRT 173 (173)
Q Consensus 137 ~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~~ 173 (173)
+..+.+++...+. ++-....++..+++|++.+..||
T Consensus 383 p~g~vwd~~c~~~-~vp~~~~w~~~v~~ye~~vl~~r 418 (419)
T PRK01076 383 PWGAVWDMYCQRH-DVPVGSDWLDEVREYEKEVLSKR 418 (419)
T ss_pred ChHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHhcc
Confidence 4455556665555 56677899999999999988776
No 216
>PF06169 DUF982: Protein of unknown function (DUF982); InterPro: IPR010385 This family consists of several hypothetical proteins from Rhizobium meliloti (Sinorhizobium meliloti), Rhizobium loti (Mesorhizobium loti) and Agrobacterium tumefaciens. The function of this family is unknown.; PDB: 2KPQ_A.
Probab=24.92 E-value=1.7e+02 Score=17.89 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=16.6
Q ss_pred CHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhc
Q 030712 137 SLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (173)
Q Consensus 137 ~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~ 170 (173)
++.+|++++...+|. .-++.+...++.-..-+.
T Consensus 19 s~~~A~~~L~~~WP~-~~g~~y~~A~~aC~~Al~ 51 (76)
T PF06169_consen 19 SVRDAADFLLDEWPV-RRGPAYRAALRACRAALD 51 (76)
T ss_dssp EHHHHHHHHHH--S----SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHc
Confidence 567777777777765 555566655554444333
No 217
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.60 E-value=2.1e+02 Score=19.55 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 030712 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (173)
Q Consensus 92 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (173)
+.+..+.+.+.+.+.+|++|++ |-+| -|++.+
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~-~G~G--~S~~~a 50 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFV-CGNG--HSAAIA 50 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEE-EEST--HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEE-EcCc--hhhhHH
Confidence 4478888999999999988887 5554 444443
No 218
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=24.59 E-value=84 Score=20.24 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCChH
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGRSRS 122 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS 122 (173)
+..+.+.++...+|.|||..|.+|.
T Consensus 16 ~~~~~~~~~~~~~V~i~l~~~~~r~ 40 (89)
T PTZ00138 16 INQIFRFFTEKTRVQIWLYDHPNLR 40 (89)
T ss_pred HHHHHHHhcCCcEEEEEEEeCCCcE
Confidence 3455556667779999999876654
No 219
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=24.49 E-value=1.5e+02 Score=18.40 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=14.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHhh
Q 030712 127 VAYLMKKHGMSLSQAMGHVKSR 148 (173)
Q Consensus 127 ~ayL~~~~~~~~~~A~~~vr~~ 148 (173)
+..++...|++++++++.|.++
T Consensus 61 ~~~~~~~~gi~~~~v~~ev~~~ 82 (83)
T PF01503_consen 61 LLGLLASMGIDLDEVFDEVHRR 82 (83)
T ss_dssp HHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhc
Confidence 3344455699999999988754
No 220
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=24.42 E-value=1e+02 Score=24.27 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=11.6
Q ss_pred HHHhCCCcEEEEcCCC
Q 030712 103 EAKRQRGGVLVHCFAG 118 (173)
Q Consensus 103 ~~~~~~~~VlVHC~~G 118 (173)
+.+..|..||.||.+|
T Consensus 105 ~~I~~g~~ILTh~~S~ 120 (275)
T PRK08335 105 ELIDDGDVIITHSFSS 120 (275)
T ss_pred HHcCCCCEEEEECCcH
Confidence 3334677899999873
No 221
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.87 E-value=1.7e+02 Score=23.68 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhhCCCCCCCH
Q 030712 116 FAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNS 156 (173)
Q Consensus 116 ~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~rp~~~~~~ 156 (173)
.-|.+|...- ++.++....++-++|++.|+..- ...|.+
T Consensus 284 KfG~~~~~~~-~s~~IR~G~itReeal~~v~~~d-~~~~~~ 322 (343)
T TIGR03573 284 KFGFGRATDH-ASIDIRSGRITREEAIELVKEYD-GEFPKE 322 (343)
T ss_pred hcCCCcCchH-HHHHHHcCCCCHHHHHHHHHHhc-ccccHH
Confidence 4677777444 35666667899999999999943 344433
No 222
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=23.76 E-value=79 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHhCCCcEEEEcCCCCChHHHHHHHHHH
Q 030712 102 DEAKRQRGGVLVHCFAGRSRSVTIVVAYLM 131 (173)
Q Consensus 102 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (173)
++.+..++||.+-|..|++=+-.+.++++.
T Consensus 230 ~~~l~~~~p~~~sC~~Gisa~~i~~al~r~ 259 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGISASIIALALERS 259 (286)
T ss_pred hcCcccCCCEEEeeccchhHHHHHHHHHhc
Confidence 444556789999999998755555554443
No 223
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=23.74 E-value=1.5e+02 Score=25.55 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEee-ecCCCCChHHHHHHHHHHHHHHHhCCC-cEEEEc-CCCCChHHHHHHHHHHh
Q 030712 76 VYKVIGV-ADKEDTNLSQYFDECISFIDEAKRQRG-GVLVHC-FAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 76 ~~~~~p~-~d~~~~~~~~~~~~~~~~i~~~~~~~~-~VlVHC-~~G~~RS~~v~~ayL~~ 132 (173)
..|-+-+ .|....+..+++ ..+++.+.++|- +|+||| ..|.+-.+.-+..|+-.
T Consensus 107 ~lHl~GL~SdGgVHsh~~hl---~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~ 163 (501)
T TIGR01307 107 KLHLMGLVSDGGVHSHIDHL---IALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQ 163 (501)
T ss_pred ceEEEEeccCCCCcchHHHH---HHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHH
Confidence 3444554 566666665555 455555556664 799999 56877777766666643
No 224
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=23.74 E-value=1.5e+02 Score=24.78 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=33.1
Q ss_pred EEEEEee-ecCCCCChHHHHHHHHHHHHHHHhC-CCcEEEEc-CCCCChHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 030712 76 VYKVIGV-ADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHC-FAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKS 147 (173)
Q Consensus 76 ~~~~~p~-~d~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC-~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~ 147 (173)
+.|-+.+ .|....+-.+++..+++.+ ... .+.|.||| ..|.+-++.....| +++.++++|+
T Consensus 124 ~lHlvGlvSDGGVHShidhl~allka~---~erg~~ei~vH~~tDGRDt~p~s~vgf--------Le~~l~fLr~ 187 (531)
T KOG4513|consen 124 TLHLVGLVSDGGVHSHIDHLQALLKAL---AERGAKEIRVHILTDGRDTLPGSSVGF--------LEADLDFLRK 187 (531)
T ss_pred eEEEEEEecCCchhhhHHHHHHHHHHH---HhcCCceEEEEEecCCccCCCCcchhh--------HHHHHHHHHH
Confidence 3344444 4666554444444434333 333 47999999 45766555444444 4556666664
No 225
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=23.52 E-value=68 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=16.6
Q ss_pred HHHhCCCcEEEEcCCCCChHHH
Q 030712 103 EAKRQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 103 ~~~~~~~~VlVHC~~G~~RS~~ 124 (173)
+.+++.+.|+|.|-+|+|.++.
T Consensus 14 ~~i~~~~~ivvlTGAGiS~~SG 35 (285)
T PRK05333 14 DFVERHPRLFVLTGAGISTDSG 35 (285)
T ss_pred HHHHhCCcEEEEeCCccccccC
Confidence 3444567999999999987743
No 226
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=23.49 E-value=1.3e+02 Score=21.32 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=21.4
Q ss_pred EcCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHhh
Q 030712 114 HCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSR 148 (173)
Q Consensus 114 HC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~ 148 (173)
+|..|.+..-+....--....+++.++|+..++..
T Consensus 128 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~ 162 (182)
T cd01906 128 ATAIGSGSQYALGILEKLYKPDMTLEEAIELALKA 162 (182)
T ss_pred EEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 45566665544433333344578899999887663
No 227
>PHA02540 61 DNA primase; Provisional
Probab=23.47 E-value=2e+02 Score=23.44 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.2
Q ss_pred cEEEEcCC-CCChHHHHHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 110 GVLVHCFA-GRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 110 ~VlVHC~~-G~~RS~~v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
....||-+ |.|.. ++.+||...+++..||+..+-+..
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 56889954 66554 568999999999999998665544
No 228
>PRK10126 tyrosine phosphatase; Provisional
Probab=23.39 E-value=80 Score=21.97 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCChHHHHHH
Q 030712 109 GGVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ 127 (173)
.+||+-|.+...||++.-+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa 21 (147)
T PRK10126 3 NNILVVCVGNICRSPTAER 21 (147)
T ss_pred CeEEEEcCCcHhHHHHHHH
Confidence 4799999999999987554
No 229
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=23.34 E-value=98 Score=27.25 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHh---hcCCCHHHHHHHHHh
Q 030712 109 GGVLVHCFAGRSRSVTIVVAYLMK---KHGMSLSQAMGHVKS 147 (173)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~---~~~~~~~~A~~~vr~ 147 (173)
.|..|||..|. ++++.++||. ..+++.++|+..++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 69999999987 5778888753 347888888876554
No 230
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.33 E-value=1.3e+02 Score=20.68 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=42.7
Q ss_pred CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHH-hCCCcEEEEcCCCCChHHHHHHHHHHhhcCC---------CHHHH
Q 030712 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK-RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM---------SLSQA 141 (173)
Q Consensus 72 ~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~---------~~~~A 141 (173)
..|+.|-.+.+.......+.- +--.++..+.++ -++-++-.-|.+ -.|+--++ .|++...|. +-++|
T Consensus 57 k~GLkYAAvEVPsGVRGRmal-iGPLIEeadAAIi~~~~p~~FGCiG-C~RTNEl~-~ylvR~k~iPiLelkYP~s~Eea 133 (152)
T COG4050 57 KRGLKYAAVEVPSGVRGRMAL-IGPLIEEADAAIIVEEAPFGFGCIG-CARTNELC-VYLVRRKGIPILELKYPRSEEEA 133 (152)
T ss_pred cccceeeEEecCCCccceeee-eehhhhhcceeeEeccCCcccceec-ccccchHH-HHHhhhcCCceEEEeCCCcHHHH
Confidence 667788877776554433211 111111111111 134466666654 46886665 578877775 57889
Q ss_pred HHHHHhhC
Q 030712 142 MGHVKSRR 149 (173)
Q Consensus 142 ~~~vr~~r 149 (173)
.++|+..+
T Consensus 134 ~~~VnkI~ 141 (152)
T COG4050 134 IDFVNKIA 141 (152)
T ss_pred HHHHHHHH
Confidence 99988877
No 231
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.31 E-value=43 Score=21.41 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=14.1
Q ss_pred CCCeeccCCeEecCcccC
Q 030712 29 RVPFEIEQGLFLGSIGAA 46 (173)
Q Consensus 29 ~~~~~I~~~l~~G~~~~~ 46 (173)
..-.||.+++|+|+.+..
T Consensus 19 rwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 19 RWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred heeEecCCCcEEcCCCHH
Confidence 345799999999977664
No 232
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.24 E-value=3.6e+02 Score=20.94 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=60.5
Q ss_pred HHHHhCCCcEEEEcCC--CCCCC--C---------CCCeEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcC
Q 030712 50 DALKSRNITHILTVAN--ALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCF 116 (173)
Q Consensus 50 ~~l~~~gi~~vi~l~~--~~~~~--~---------~~~~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 116 (173)
+..++.|....++++. ..... + ..|... +.+.|..-.-....+...++.+.+... .++-+||.
T Consensus 125 ~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~H 200 (275)
T cd07937 125 KAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS--ICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHTH 200 (275)
T ss_pred HHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 4566778776665532 11111 1 333333 445555433333345566666665543 68999998
Q ss_pred CCCChHHHHHHHHHHhh---------------cCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHh
Q 030712 117 AGRSRSVTIVVAYLMKK---------------HGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (173)
Q Consensus 117 ~G~~RS~~v~~ayL~~~---------------~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l 169 (173)
+-.|-+.+-+++.+-.- .+.+.++.+..++...-....+...+..+.++-+.+
T Consensus 201 nd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~ 268 (275)
T cd07937 201 DTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEV 268 (275)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH
Confidence 87666655444433321 124677777777765222334445555555554443
No 233
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.21 E-value=2e+02 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCChH-HHHHHHHHHhhcCC
Q 030712 108 RGGVLVHCFAGRSRS-VTIVVAYLMKKHGM 136 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS-~~v~~ayL~~~~~~ 136 (173)
+++|+|-|-.|.|=. |.++|.+|.. .|+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~-~G~ 87 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHH-FGY 87 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH-CCC
Confidence 368999999998877 5566666654 454
No 234
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=22.83 E-value=1.7e+02 Score=22.76 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=16.8
Q ss_pred HHHHhhcCCCHHHHHHHHHhh
Q 030712 128 AYLMKKHGMSLSQAMGHVKSR 148 (173)
Q Consensus 128 ayL~~~~~~~~~~A~~~vr~~ 148 (173)
..+|...|++.++|++.++..
T Consensus 233 ~vl~~~~g~s~~eA~~~~~~~ 253 (303)
T cd00687 233 KVLAEEHGLSLEEAISVVRDM 253 (303)
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 456777899999999888664
No 235
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=22.81 E-value=2.5e+02 Score=22.58 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=38.9
Q ss_pred hCCCcEEEEcCCCCC-hHHHHHHHHHHhhcC----CCHHHHHHHHHhhCCCCCCCHh---HHHHHHHHHHHh
Q 030712 106 RQRGGVLVHCFAGRS-RSVTIVVAYLMKKHG----MSLSQAMGHVKSRRPQAAPNSG---FLLQLQELEKSL 169 (173)
Q Consensus 106 ~~~~~VlVHC~~G~~-RS~~v~~ayL~~~~~----~~~~~A~~~vr~~rp~~~~~~~---~~~~L~~~~~~l 169 (173)
..|-+|+.|...|.+ ++|+ +=++...| .+++++.+.+.+......+-+. -++.|....+.|
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~l 165 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRREL 165 (330)
T ss_pred hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHh
Confidence 468999999998876 7665 34555556 4688999999877643323222 334455555444
No 236
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=22.79 E-value=1.7e+02 Score=23.26 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHhhcCCC
Q 030712 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (173)
Q Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~ 137 (173)
.+..+++.+-+.+.++++|++.=.++.+|-+..-+..+...+|.+
T Consensus 47 ~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~ 91 (299)
T PRK05441 47 QIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVP 91 (299)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCC
Confidence 355566666667778878765333333333323334444445554
No 237
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=22.69 E-value=1.4e+02 Score=15.94 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHh
Q 030712 124 TIVVAYLMKKHGMSLSQAMGHVKS 147 (173)
Q Consensus 124 ~v~~ayL~~~~~~~~~~A~~~vr~ 147 (173)
.+|..||-. .+|+++.|+...-.
T Consensus 16 ~~A~~~L~~-~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 16 DVAIQYLEA-NNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH-TTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHh
Confidence 455555555 48888888877644
No 238
>PRK05434 phosphoglyceromutase; Provisional
Probab=22.59 E-value=1.6e+02 Score=25.38 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=35.3
Q ss_pred eEEEEEee-ecCCCCChHHHHHHHHHHHHHHHhCC-CcEEEEc-CCCCChHHHHHHHHHHh
Q 030712 75 FVYKVIGV-ADKEDTNLSQYFDECISFIDEAKRQR-GGVLVHC-FAGRSRSVTIVVAYLMK 132 (173)
Q Consensus 75 ~~~~~~p~-~d~~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC-~~G~~RS~~v~~ayL~~ 132 (173)
-..|-+-+ .|....+..+++ ..+++.+.++| ++|+||| ..|.+-.+.-+..|+-.
T Consensus 110 ~~lHl~GL~SdggVHsh~~hl---~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~ 167 (507)
T PRK05434 110 GALHLMGLLSDGGVHSHIDHL---FALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEE 167 (507)
T ss_pred CeEEEEEeccCCCcccHHHHH---HHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 33444554 566666655555 45555555666 5999999 56877777766666643
No 239
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.59 E-value=1e+02 Score=24.63 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=11.8
Q ss_pred HHhCCCcEEEEcCCCC
Q 030712 104 AKRQRGGVLVHCFAGR 119 (173)
Q Consensus 104 ~~~~~~~VlVHC~~G~ 119 (173)
.+..|..||.||.+|.
T Consensus 115 ~I~~g~~ILT~~~Sg~ 130 (303)
T TIGR00524 115 LIKDGDTVLTHCNAGA 130 (303)
T ss_pred HccCCCEEEEecCCcc
Confidence 3346778999998853
No 240
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=22.42 E-value=1.6e+02 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCC
Q 030712 97 CISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 97 ~~~~i~~~~~~~~~VlVHC~~G 118 (173)
+-..++.+.+.+.||.+||..+
T Consensus 110 ~~~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 110 FRAQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHHHhCCCeEEEeeCc
Confidence 3344455555688999999865
No 241
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=22.39 E-value=1.2e+02 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHH
Q 030712 90 LSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (173)
Q Consensus 90 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (173)
....++.-++.+.+++++++.++||=-+|+|-++.
T Consensus 37 ~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~ 71 (353)
T KOG1905|consen 37 PPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAG 71 (353)
T ss_pred CHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccC
Confidence 34456777777778888999999999999876543
No 242
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=22.38 E-value=2.6e+02 Score=19.02 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHH
Q 030712 107 QRGGVLVHCFAGRSRSVTIVVAYLM 131 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (173)
+|+.+++....|.|+|.+...+.+.
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCccHHHHHHHHHh
Confidence 5678999999999999887766554
No 243
>PRK06934 flavodoxin; Provisional
Probab=22.35 E-value=1.6e+02 Score=22.34 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=24.2
Q ss_pred eEEEEEeeecCCCCChHHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Q 030712 75 FVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGR 119 (173)
Q Consensus 75 ~~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (173)
.-++.+|+-....|... ..|+++..-.|+.|...|+.|.
T Consensus 132 ~I~IG~PIWwg~~P~~V------~tFLe~~d~~GK~I~pF~T~gg 170 (221)
T PRK06934 132 QIFIGYPIWWYKMPMVM------YSFFEQHDFSGKTLIPFTTHGG 170 (221)
T ss_pred EEEEEcchhhccccHHH------HHHHHhcCCCCCEEEEEEecCC
Confidence 34666676555444332 2455555556899999999854
No 244
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=22.32 E-value=90 Score=24.25 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCh
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGRSR 121 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~R 121 (173)
..........++.|++||++-.++
T Consensus 81 s~vaa~~~~rpg~iv~HcSga~~~ 104 (289)
T COG5495 81 SGVAATSLNRPGTIVAHCSGANGS 104 (289)
T ss_pred HHHHHhcccCCCeEEEEccCCCch
Confidence 344555566789999999875543
No 245
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.21 E-value=2.4e+02 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCChH-HHHHHHHHHhhcCC
Q 030712 108 RGGVLVHCFAGRSRS-VTIVVAYLMKKHGM 136 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS-~~v~~ayL~~~~~~ 136 (173)
+++|+|-|-.|.|=. |.+++.+|.. .|+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~-~G~ 88 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAH-FGY 88 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHH-CCC
Confidence 368999999888777 6666666654 354
No 246
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=21.90 E-value=1.2e+02 Score=26.14 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChHHHHHH
Q 030712 108 RGGVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ 127 (173)
|..-.+.|.+|++|||++=+
T Consensus 456 gavP~wNCkSGKDRTGmmD~ 475 (564)
T PRK15378 456 DAVPAWNCKSGKDRTGMMDS 475 (564)
T ss_pred cceeeeccCCCCccccchHH
Confidence 34457899999999988543
No 247
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=21.60 E-value=97 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEcCCCC
Q 030712 94 FDECISFIDEAKRQRG-GVLVHCFAGR 119 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~-~VlVHC~~G~ 119 (173)
-.++++.+.+....-. +|.|||-.|.
T Consensus 159 ~~d~~eIl~~~~~~~~~~vvvHsFtGs 185 (296)
T KOG3020|consen 159 HEDLLEILKRFLPECHKKVVVHSFTGS 185 (296)
T ss_pred hHHHHHHHHHhccccCCceEEEeccCC
Confidence 3455555555554444 7999999984
No 248
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=21.40 E-value=1.5e+02 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 030712 98 ISFIDEAKRQRGGVLVHCFAGRSRSVTIVV 127 (173)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 127 (173)
.+.|......+.+|.+..++|.+=|..+++
T Consensus 5 ~~av~~~~~~~~~v~~~LSGGlDSs~va~~ 34 (269)
T cd01991 5 EDAVRRRLRSDVPVGVLLSGGLDSSLVAAL 34 (269)
T ss_pred HHHHHHHhccCCceEEeecccHHHHHHHHH
Confidence 455556667788999999999986644333
No 249
>PRK10565 putative carbohydrate kinase; Provisional
Probab=21.29 E-value=2.2e+02 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCcEEEEcCCCCChH-HHHHHHHHHhhcCC
Q 030712 99 SFIDEAKRQRGGVLVHCFAGRSRS-VTIVVAYLMKKHGM 136 (173)
Q Consensus 99 ~~i~~~~~~~~~VlVHC~~G~~RS-~~v~~ayL~~~~~~ 136 (173)
+.|.+....+.+|+|-|-.|.|=. |.+++.+|.. .|+
T Consensus 51 ~~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~-~G~ 88 (508)
T PRK10565 51 QVARSAYPDARHWLVLCGHGNNGGDGYVVARLAQA-AGI 88 (508)
T ss_pred HHHHHhcCCCCeEEEEEcCCCchHHHHHHHHHHHH-CCC
Confidence 333333334568999999888777 5556666654 354
No 250
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=21.29 E-value=4.5e+02 Score=21.29 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC-CCChHHH-HHHHHHHhhcCCCHHHHHHHHHhhC
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFA-GRSRSVT-IVVAYLMKKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~-G~~RS~~-v~~ayL~~~~~~~~~~A~~~vr~~r 149 (173)
+......+.+.+..+..|+|+=.. ++.+..- +....+....|++.++|..++++.+
T Consensus 293 l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 350 (360)
T cd06199 293 MREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELK 350 (360)
T ss_pred HHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 433344444455566678875445 5655533 3334455567899999988887765
No 251
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=21.00 E-value=1.6e+02 Score=22.41 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHH
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY 129 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 129 (173)
++.+.+.+.......+.|.||=.+|.|-|..+..++
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 555556665544456789999999999997765544
No 252
>PHA02769 hypothetical protein; Provisional
Probab=20.70 E-value=2.6e+02 Score=19.00 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=27.9
Q ss_pred hhcCCCHHHHHHHHHhhCCCCCCCHhHHHHHHHHHHHhccC
Q 030712 132 KKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQGR 172 (173)
Q Consensus 132 ~~~~~~~~~A~~~vr~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (173)
...|++.+..+ ++|.+- ...|...+..+|..++.+++++
T Consensus 73 ~~~~ip~drs~-firrit-k~apgd~lvnfl~~l~~k~~~d 111 (154)
T PHA02769 73 QQYNIPNDRSY-FIRRIT-KTAPGDHLVNFLNDLAEKLKKD 111 (154)
T ss_pred HHhCCCcchHH-HHHHHh-ccCChHHHHHHHHHHHHHHhcC
Confidence 34466655544 455555 5789999999999999988875
No 253
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=20.61 E-value=1.2e+02 Score=23.22 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=22.8
Q ss_pred CCCcEEEEcCCCCChHHHHHH--HHHHhhcCCCH
Q 030712 107 QRGGVLVHCFAGRSRSVTIVV--AYLMKKHGMSL 138 (173)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~--ayL~~~~~~~~ 138 (173)
.+++++|-..+|-|-|.+++. ++|+...+.++
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~ 45 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPP 45 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTG
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCCh
Confidence 357999999999999988765 56776655543
No 254
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=20.51 E-value=1.2e+02 Score=20.46 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.2
Q ss_pred EEEEcCCCCChHHHHH
Q 030712 111 VLVHCFAGRSRSVTIV 126 (173)
Q Consensus 111 VlVHC~~G~~RS~~v~ 126 (173)
||+=|.++..||++.-
T Consensus 1 ILFvC~~N~cRS~mAE 16 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAE 16 (138)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred CEEEeCCCcchHHHHH
Confidence 6788999999997643
No 255
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.46 E-value=1.7e+02 Score=18.06 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q 030712 94 FDECISFIDEAKRQRGGVLVHCFAG 118 (173)
Q Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~~G 118 (173)
+.++++.+ ..... ++++|++.+|
T Consensus 74 ~~~v~~~i-~~~~~-~~~vis~~ag 96 (96)
T PF03807_consen 74 LPEVLSEI-PHLLK-GKLVISIAAG 96 (96)
T ss_dssp HHHHHHHH-HHHHT-TSEEEEESTT
T ss_pred HHHHHHHH-hhccC-CCEEEEeCCC
Confidence 55566666 33344 4999999987
No 256
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.42 E-value=93 Score=20.08 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=15.4
Q ss_pred hhcCCCHHHHHHHHHhhC
Q 030712 132 KKHGMSLSQAMGHVKSRR 149 (173)
Q Consensus 132 ~~~~~~~~~A~~~vr~~r 149 (173)
...|++++++++.++..+
T Consensus 51 Lr~G~~~~~ii~~L~gi~ 68 (95)
T PF12637_consen 51 LRSGVPPEEIIDQLRGIR 68 (95)
T ss_pred HHcCCCHHHHHHHhcCCC
Confidence 446999999999999887
No 257
>PLN02444 HMP-P synthase
Probab=20.17 E-value=6.2e+02 Score=22.46 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=60.4
Q ss_pred ecCcccCCCHH-------HHHhCCCcEEEEcCCCCCCCC-------CCCeEEEEEeeecCC---CCCh-HHHHHHHHHHH
Q 030712 40 LGSIGAASNKD-------ALKSRNITHILTVANALAPAH-------PNDFVYKVIGVADKE---DTNL-SQYFDECISFI 101 (173)
Q Consensus 40 ~G~~~~~~~~~-------~l~~~gi~~vi~l~~~~~~~~-------~~~~~~~~~p~~d~~---~~~~-~~~~~~~~~~i 101 (173)
+|+-....+.+ .....|..+|.||+....... ...+-.-.+|+-... .... .-..+.+++.|
T Consensus 227 IGtS~~~s~ie~EveK~~~A~~~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~i 306 (642)
T PLN02444 227 IGNSAVTSSIEEEVYKLQWATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETL 306 (642)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHH
Confidence 45555555432 234589999999987654220 011111112221110 0011 11256677777
Q ss_pred HHHHhCC-CcEEEEcC--------------CCCChHHHHHHHHHHhhcCCC-----HHHHHHHHHh
Q 030712 102 DEAKRQR-GGVLVHCF--------------AGRSRSVTIVVAYLMKKHGMS-----LSQAMGHVKS 147 (173)
Q Consensus 102 ~~~~~~~-~~VlVHC~--------------~G~~RS~~v~~ayL~~~~~~~-----~~~A~~~vr~ 147 (173)
.+..++| -=+-|||. +=+||.|++.++|++....-+ +++.++.+++
T Consensus 307 eeQaeqGVDfmTIH~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~ 372 (642)
T PLN02444 307 IEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQ 372 (642)
T ss_pred HHHHHhCCCEEEEChhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 7777766 45778886 346888999999999865432 4555555555
No 258
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.17 E-value=66 Score=24.82 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=30.1
Q ss_pred CeEecCcccCC-CHHHHHhCCCcEEEEcCCCCCCC---------CCCCeEEEEEe
Q 030712 37 GLFLGSIGAAS-NKDALKSRNITHILTVANALAPA---------HPNDFVYKVIG 81 (173)
Q Consensus 37 ~l~~G~~~~~~-~~~~l~~~gi~~vi~l~~~~~~~---------~~~~~~~~~~p 81 (173)
.+..|...+.. =..++++++|+.|||.+.+.... -..++-|+++-
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 47788873333 34678889999999999875432 14555555554
No 259
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=20.06 E-value=4.5e+02 Score=21.98 Aligned_cols=51 Identities=24% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCcEEEEcCC-CCChHHHHHHHHH--------HhhcCCCHHHHHHHHHh
Q 030712 97 CISFIDEAKRQRGGVLVHCFA-GRSRSVTIVVAYL--------MKKHGMSLSQAMGHVKS 147 (173)
Q Consensus 97 ~~~~i~~~~~~~~~VlVHC~~-G~~RS~~v~~ayL--------~~~~~~~~~~A~~~vr~ 147 (173)
+.+...-+...|-++.+||.. +-+.+.++++... ...-||.+++.+.-+.+
T Consensus 337 a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~l~kpg~g~d~~~~~~~n 396 (408)
T TIGR01502 337 IARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQVLAKPGMGVDEGMMIVKN 396 (408)
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEecCCCCcchhHHHHHH
Confidence 444555555678899999875 4444433332221 12346777777655543
Done!