Query 030714
Match_columns 173
No_of_seqs 149 out of 586
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 6.7E-32 2.3E-36 220.1 7.1 109 26-139 9-117 (179)
2 1n1j_A NF-YB; histone-like PAI 100.0 2.3E-30 8E-35 189.5 11.4 92 26-117 2-93 (93)
3 2byk_B Chrac-14; nucleosome sl 100.0 2.7E-30 9.2E-35 200.4 10.7 97 26-122 3-99 (128)
4 3b0c_W CENP-W, centromere prot 99.9 6.7E-23 2.3E-27 145.4 7.5 69 30-99 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 2.2E-21 7.4E-26 154.9 7.8 75 31-106 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 1.1E-19 3.8E-24 125.5 7.8 66 32-99 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 3E-19 1E-23 135.3 8.6 87 28-116 3-89 (111)
8 2byk_A Chrac-16; nucleosome sl 99.7 4.9E-19 1.7E-23 139.1 2.6 94 28-122 15-112 (140)
9 1f1e_A Histone fold protein; a 99.7 1.8E-17 6E-22 132.3 8.6 72 25-98 75-146 (154)
10 4g92_C HAPE; transcription fac 99.7 7.8E-17 2.7E-21 123.1 7.8 77 28-105 37-113 (119)
11 1n1j_B NF-YC; histone-like PAI 99.7 7.9E-17 2.7E-21 118.8 6.8 81 26-107 13-93 (97)
12 2hue_C Histone H4; mini beta s 99.7 1.1E-16 3.9E-21 115.3 7.0 77 26-104 4-80 (84)
13 1id3_B Histone H4; nucleosome 99.7 1.7E-16 5.8E-21 118.6 8.0 78 25-104 21-98 (102)
14 1tzy_D Histone H4-VI; histone- 99.6 2E-15 6.8E-20 112.5 8.2 78 25-104 22-99 (103)
15 1ku5_A HPHA, archaeal histon; 99.6 2.3E-15 7.7E-20 104.6 7.5 64 32-97 6-69 (70)
16 2yfw_B Histone H4, H4; cell cy 99.6 2.9E-15 1E-19 111.7 7.2 78 25-104 22-99 (103)
17 1jfi_A Transcription regulator 99.4 6E-13 2E-17 98.4 5.7 76 30-106 9-84 (98)
18 2hue_B Histone H3; mini beta s 99.2 1E-10 3.5E-15 83.7 8.4 71 30-100 1-74 (77)
19 3nqj_A Histone H3-like centrom 99.0 5.5E-10 1.9E-14 80.8 7.5 70 31-100 2-76 (82)
20 2yfv_A Histone H3-like centrom 99.0 4.7E-10 1.6E-14 83.8 6.5 72 26-97 21-98 (100)
21 3nqu_A Histone H3-like centrom 98.9 1E-09 3.4E-14 86.4 6.3 75 27-101 56-135 (140)
22 3r45_A Histone H3-like centrom 98.9 1.1E-09 3.6E-14 87.6 6.5 74 27-100 72-150 (156)
23 1tzy_C Histone H3; histone-fol 98.9 1.5E-09 5.3E-14 84.9 7.0 74 27-100 57-133 (136)
24 1taf_B TFIID TBP associated fa 98.8 2.2E-08 7.4E-13 70.4 8.2 65 31-97 5-69 (70)
25 4dra_A Centromere protein S; D 98.8 1.4E-08 4.7E-13 77.4 6.9 75 37-117 32-107 (113)
26 3v9r_A MHF1, uncharacterized p 98.7 3.8E-08 1.3E-12 72.2 7.3 63 37-99 17-80 (90)
27 3vh5_A CENP-S; histone fold, c 98.7 3.8E-08 1.3E-12 77.4 6.5 63 37-99 24-87 (140)
28 3b0b_B CENP-S, centromere prot 98.6 8E-08 2.7E-12 72.4 7.1 63 37-99 24-87 (107)
29 2nqb_C Histone H2A; nucleosome 98.5 3.4E-07 1.2E-11 70.2 7.8 69 29-98 20-88 (123)
30 1f66_C Histone H2A.Z; nucleoso 98.5 3.4E-07 1.2E-11 70.7 7.7 70 29-98 24-93 (128)
31 1taf_A TFIID TBP associated fa 98.5 6.5E-07 2.2E-11 62.5 7.9 60 37-98 6-65 (68)
32 1tzy_A Histone H2A-IV; histone 98.5 4.3E-07 1.5E-11 70.2 7.7 69 29-98 22-90 (129)
33 2f8n_G Core histone macro-H2A. 98.5 5E-07 1.7E-11 69.1 7.7 69 29-98 19-87 (120)
34 1id3_C Histone H2A.1; nucleoso 98.4 4E-07 1.4E-11 70.6 7.2 69 29-98 22-90 (131)
35 2f8n_K Histone H2A type 1; nuc 98.4 7.5E-07 2.6E-11 70.6 7.6 69 29-98 41-109 (149)
36 2ly8_A Budding yeast chaperone 98.4 5.2E-07 1.8E-11 69.4 6.4 54 51-104 64-117 (121)
37 2nqb_D Histone H2B; nucleosome 98.3 2.2E-06 7.5E-11 66.1 7.3 64 36-100 37-100 (123)
38 2jss_A Chimera of histone H2B. 98.3 2.3E-06 7.7E-11 69.7 7.6 70 29-98 102-171 (192)
39 1tzy_B Histone H2B; histone-fo 98.2 2.9E-06 9.9E-11 65.7 7.3 63 37-100 41-103 (126)
40 2l5a_A Histone H3-like centrom 98.2 2.6E-06 8.9E-11 71.9 6.8 71 30-100 9-85 (235)
41 4dra_E Centromere protein X; D 98.0 2.4E-05 8.3E-10 56.6 8.5 70 30-99 10-80 (84)
42 2l5a_A Histone H3-like centrom 98.0 2.7E-06 9.1E-11 71.8 3.6 59 40-100 169-227 (235)
43 2jss_A Chimera of histone H2B. 98.0 2.1E-05 7.3E-10 63.9 7.9 62 36-98 7-68 (192)
44 1h3o_B Transcription initiatio 97.9 6.8E-05 2.3E-09 53.3 8.1 66 32-98 5-70 (76)
45 3b0b_C CENP-X, centromere prot 97.9 6.5E-05 2.2E-09 53.9 8.0 73 27-99 3-76 (81)
46 1bh9_B TAFII28; histone fold, 97.5 0.00042 1.4E-08 50.4 7.9 67 32-100 16-83 (89)
47 2ly8_A Budding yeast chaperone 96.7 0.0042 1.4E-07 47.5 6.6 85 32-118 1-94 (121)
48 3v9r_B MHF2, uncharacterized p 96.3 0.0071 2.4E-07 44.1 5.4 46 33-78 2-48 (88)
49 3uk6_A RUVB-like 2; hexameric 92.3 0.28 9.5E-06 40.5 6.4 66 33-98 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 87.2 1.7 5.8E-05 42.6 8.2 67 29-97 101-167 (1049)
51 2c9o_A RUVB-like 1; hexameric 86.5 1.2 4.1E-05 38.9 6.1 66 33-98 366-436 (456)
52 2v1u_A Cell division control p 84.9 2.5 8.5E-05 34.3 6.9 67 35-101 203-278 (387)
53 1fnn_A CDC6P, cell division co 84.5 3.7 0.00013 33.5 7.8 73 34-106 194-281 (389)
54 2qby_A CDC6 homolog 1, cell di 80.5 6.5 0.00022 31.7 7.8 74 33-106 197-279 (386)
55 3kw6_A 26S protease regulatory 77.9 1.9 6.6E-05 28.7 3.2 43 57-99 27-73 (78)
56 3k1j_A LON protease, ATP-depen 77.2 17 0.00058 32.9 10.2 66 50-116 313-391 (604)
57 3fh2_A Probable ATP-dependent 75.2 3.5 0.00012 30.4 4.3 36 51-98 6-41 (146)
58 1khy_A CLPB protein; alpha hel 74.7 7.4 0.00025 28.1 6.0 36 51-98 5-40 (148)
59 2y1q_A CLPC N-domain, negative 74.6 3 0.0001 30.4 3.8 35 51-97 5-39 (150)
60 2r44_A Uncharacterized protein 72.1 16 0.00056 29.5 8.1 50 49-98 224-296 (331)
61 1wwi_A Hypothetical protein TT 71.7 9.3 0.00032 30.0 6.1 58 33-92 3-60 (148)
62 3fes_A ATP-dependent CLP endop 71.4 3.9 0.00013 30.1 3.8 36 51-98 7-42 (145)
63 2dzn_B 26S protease regulatory 70.5 4.1 0.00014 27.5 3.4 30 71-100 40-69 (82)
64 3vlf_B 26S protease regulatory 69.6 4.3 0.00015 27.9 3.4 34 68-101 40-73 (88)
65 1k6k_A ATP-dependent CLP prote 68.9 3.8 0.00013 29.6 3.2 33 52-96 2-34 (143)
66 3aji_B S6C, proteasome (prosom 68.5 3.9 0.00013 27.4 3.0 33 68-100 40-72 (83)
67 1g8p_A Magnesium-chelatase 38 68.4 12 0.0004 30.2 6.4 51 49-99 265-322 (350)
68 2qby_B CDC6 homolog 3, cell di 67.1 14 0.00048 30.1 6.6 67 33-101 197-272 (384)
69 2krk_A 26S protease regulatory 65.9 5.7 0.0002 27.4 3.5 32 68-99 50-81 (86)
70 1r4v_A Hypothetical protein AQ 60.7 11 0.00038 30.2 4.6 63 28-92 20-84 (171)
71 2chg_A Replication factor C sm 57.9 14 0.00047 26.8 4.5 63 33-97 161-224 (226)
72 3fes_A ATP-dependent CLP endop 56.6 15 0.00052 26.8 4.6 39 50-100 80-118 (145)
73 3fwb_A Cell division control p 56.2 46 0.0016 22.9 8.5 39 75-113 101-139 (161)
74 3zri_A CLPB protein, CLPV; cha 55.7 8.9 0.00031 29.7 3.3 36 51-98 24-59 (171)
75 1in4_A RUVB, holliday junction 53.6 35 0.0012 28.1 6.8 68 36-103 183-254 (334)
76 1k6k_A ATP-dependent CLP prote 53.4 33 0.0011 24.5 5.9 37 50-98 78-114 (143)
77 2i7a_A Calpain 13; calcium-dep 53.3 67 0.0023 23.9 9.6 88 26-114 14-123 (174)
78 5pal_A Parvalbumin; calcium-bi 52.5 42 0.0014 22.1 6.0 80 33-115 6-89 (109)
79 3fh2_A Probable ATP-dependent 51.5 40 0.0014 24.4 6.2 38 50-99 80-117 (146)
80 3bos_A Putative DNA replicatio 51.4 33 0.0011 25.4 5.8 61 35-97 176-241 (242)
81 1njg_A DNA polymerase III subu 48.9 22 0.00077 25.9 4.4 63 33-96 185-248 (250)
82 3h4m_A Proteasome-activating n 48.8 16 0.00053 28.7 3.7 33 67-99 226-258 (285)
83 3pm8_A PFCDPK2, calcium-depend 48.7 36 0.0012 25.3 5.7 80 30-112 19-99 (197)
84 2f3n_A SH3 and multiple ankyri 45.7 14 0.00047 24.7 2.5 21 87-107 5-25 (76)
85 3mse_B Calcium-dependent prote 43.5 89 0.0031 22.5 8.3 73 38-114 6-81 (180)
86 2y1q_A CLPC N-domain, negative 43.1 31 0.001 24.8 4.3 36 51-98 79-114 (150)
87 1bu3_A Calcium-binding protein 42.7 69 0.0024 20.9 6.5 82 32-115 6-90 (109)
88 3bq7_A Diacylglycerol kinase d 41.9 17 0.00057 24.6 2.5 23 86-108 9-31 (81)
89 1w5s_A Origin recognition comp 41.3 1E+02 0.0035 25.0 7.8 67 33-100 215-294 (412)
90 3fs7_A Parvalbumin, thymic; ca 41.1 52 0.0018 21.6 5.0 81 32-115 6-90 (109)
91 3vfd_A Spastin; ATPase, microt 40.7 1.1E+02 0.0037 25.5 8.0 69 34-102 283-368 (389)
92 2kru_A Light-independent proto 40.3 20 0.00069 24.2 2.7 51 49-100 3-54 (63)
93 1lv7_A FTSH; alpha/beta domain 40.3 26 0.00088 27.2 3.7 64 36-100 185-253 (257)
94 3pvs_A Replication-associated 39.8 46 0.0016 29.1 5.7 67 33-100 165-245 (447)
95 4ds7_A Calmodulin, CAM; protei 39.5 84 0.0029 21.0 9.5 41 75-115 89-129 (147)
96 4b4t_I 26S protease regulatory 39.0 24 0.00081 31.8 3.7 59 39-98 359-422 (437)
97 3zri_A CLPB protein, CLPV; cha 38.8 38 0.0013 26.0 4.4 37 50-98 97-134 (171)
98 2d8c_A Phosphatidylcholine:cer 38.8 13 0.00045 26.6 1.7 22 87-108 20-41 (97)
99 2zbk_B Type 2 DNA topoisomeras 38.7 17 0.00059 33.1 2.8 57 43-99 427-485 (530)
100 4b4t_L 26S protease subunit RP 38.4 27 0.00092 31.1 4.0 32 67-98 390-421 (437)
101 4b4t_J 26S protease regulatory 38.1 27 0.00093 30.9 3.9 32 67-98 357-388 (405)
102 2gle_A Neurabin-1; SAM domain, 38.1 15 0.0005 24.2 1.7 21 87-107 7-27 (74)
103 4b4t_M 26S protease regulatory 37.1 25 0.00086 31.2 3.6 33 67-99 390-422 (434)
104 4b4t_H 26S protease regulatory 37.1 24 0.00082 32.0 3.5 32 67-98 418-449 (467)
105 1tiz_A Calmodulin-related prot 36.6 50 0.0017 19.3 4.0 40 76-115 7-46 (67)
106 1uxc_A FRUR (1-57), fructose r 36.4 43 0.0015 21.8 3.8 35 32-67 11-45 (65)
107 2pvb_A Protein (parvalbumin); 36.0 71 0.0024 20.8 5.0 81 33-115 6-89 (108)
108 3pxg_A Negative regulator of g 36.0 53 0.0018 28.6 5.5 38 51-100 5-42 (468)
109 1pva_A Parvalbumin; calcium bi 36.0 58 0.002 21.3 4.6 81 33-115 7-90 (110)
110 1hqc_A RUVB; extended AAA-ATPa 35.6 41 0.0014 26.6 4.4 70 33-102 168-241 (324)
111 4b4t_K 26S protease regulatory 35.3 24 0.00081 31.3 3.1 31 68-98 383-413 (428)
112 2l09_A ASR4154 protein; proto- 34.6 21 0.00073 24.0 2.1 49 50-99 3-52 (62)
113 1wlz_A DJBP, CAP-binding prote 34.4 96 0.0033 20.2 5.7 28 75-102 29-56 (105)
114 1khy_A CLPB protein; alpha hel 34.3 44 0.0015 23.8 4.0 24 74-97 93-116 (148)
115 3bow_A Calpain-2 catalytic sub 33.8 1.9E+02 0.0066 26.7 9.1 85 31-115 546-650 (714)
116 3h4s_E KCBP interacting Ca2+-b 33.5 50 0.0017 23.1 4.1 39 75-113 45-84 (135)
117 2lmt_A Calmodulin-related prot 33.5 93 0.0032 21.7 5.6 42 74-115 87-128 (148)
118 2obh_A Centrin-2; DNA repair c 33.5 1.1E+02 0.0039 20.9 6.0 41 74-114 83-123 (143)
119 1kw4_A Polyhomeotic; SAM domai 32.9 27 0.00091 24.3 2.5 23 86-108 16-39 (89)
120 2lv7_A Calcium-binding protein 32.8 37 0.0013 23.3 3.2 54 50-115 28-81 (100)
121 2ovk_C Myosin catalytic light 32.5 66 0.0023 22.3 4.6 40 74-113 89-128 (159)
122 2kz2_A Calmodulin, CAM; TR2C, 32.4 60 0.0021 21.4 4.2 39 77-115 36-74 (94)
123 1y1x_A Leishmania major homolo 32.3 1.4E+02 0.0049 21.6 9.1 40 74-113 97-136 (191)
124 1rwy_A Parvalbumin alpha; EF-h 32.2 68 0.0023 20.9 4.4 81 33-115 6-89 (109)
125 2joj_A Centrin protein; N-term 32.1 84 0.0029 19.0 4.6 37 77-113 14-50 (77)
126 2qz4_A Paraplegin; AAA+, SPG7, 31.9 19 0.00064 27.7 1.7 33 67-99 217-249 (262)
127 2ktg_A Calmodulin, putative; e 31.6 89 0.003 19.3 4.8 39 77-115 21-59 (85)
128 3b9p_A CG5977-PA, isoform A; A 31.5 1.3E+02 0.0046 23.4 6.7 59 51-109 208-282 (297)
129 2lfh_A DNA-binding protein inh 29.5 1.3E+02 0.0046 20.4 7.2 30 40-72 34-66 (68)
130 3i5g_B Myosin regulatory light 29.2 1.2E+02 0.0043 21.6 5.8 54 47-112 5-58 (153)
131 1ixz_A ATP-dependent metallopr 29.2 40 0.0014 26.1 3.1 58 39-97 192-254 (254)
132 3qrx_A Centrin; calcium-bindin 28.7 1.3E+02 0.0044 20.8 5.6 17 81-97 75-91 (169)
133 3j04_B Myosin regulatory light 28.6 72 0.0025 21.5 4.1 40 76-115 82-121 (143)
134 3qrx_A Centrin; calcium-bindin 28.5 1.5E+02 0.005 20.5 10.0 41 75-115 106-146 (169)
135 3nbx_X ATPase RAVA; AAA+ ATPas 28.4 2.2E+02 0.0076 25.4 8.3 56 36-93 212-280 (500)
136 1ofh_A ATP-dependent HSL prote 28.2 68 0.0023 24.9 4.4 52 50-101 233-301 (310)
137 3pfi_A Holliday junction ATP-d 28.2 43 0.0015 26.9 3.3 68 35-102 186-257 (338)
138 1jr3_A DNA polymerase III subu 27.8 59 0.002 26.1 4.1 65 33-98 178-243 (373)
139 3sg6_A Gcamp2, myosin light ch 27.7 1.6E+02 0.0055 26.2 7.2 41 75-115 390-430 (450)
140 2q2e_B Type 2 DNA topoisomeras 27.6 21 0.0007 33.4 1.4 56 43-98 435-492 (621)
141 3i5g_C Myosin catalytic light 26.9 1E+02 0.0035 22.3 4.9 40 74-113 89-128 (159)
142 3f8t_A Predicted ATPase involv 26.8 1.8E+02 0.006 26.7 7.4 66 32-97 393-481 (506)
143 1sxj_D Activator 1 41 kDa subu 26.8 39 0.0013 27.0 2.8 67 33-100 192-264 (353)
144 1avs_A Troponin C; muscle cont 26.8 80 0.0028 20.0 3.9 39 77-115 27-65 (90)
145 3pxi_A Negative regulator of g 26.6 88 0.003 28.8 5.5 37 51-99 5-41 (758)
146 2znd_A Programmed cell death p 26.6 1.3E+02 0.0046 21.0 5.5 76 33-114 41-118 (172)
147 3ox6_A Calcium-binding protein 26.5 1.5E+02 0.005 19.8 10.0 42 74-115 92-134 (153)
148 1u5t_A Appears to BE functiona 26.5 63 0.0022 26.6 4.0 37 64-100 88-142 (233)
149 1iy2_A ATP-dependent metallopr 26.3 48 0.0016 26.2 3.2 59 38-97 215-278 (278)
150 3dtp_E RLC, myosin regulatory 26.1 1.3E+02 0.0045 22.0 5.5 34 76-110 132-165 (196)
151 1bh9_A TAFII18; histone fold, 26.0 1.2E+02 0.0041 18.7 6.0 39 38-77 6-44 (45)
152 2kn2_A Calmodulin; S MAPK phos 26.0 85 0.0029 19.8 3.9 23 80-102 19-41 (92)
153 1qvr_A CLPB protein; coiled co 25.7 51 0.0018 31.0 3.7 35 51-97 5-39 (854)
154 2ovk_B RLC, myosin regulatory 25.7 1.1E+02 0.0039 20.8 4.8 34 80-113 26-59 (153)
155 1s6j_A CDPK, calcium-dependent 25.2 67 0.0023 20.1 3.2 39 77-115 30-68 (87)
156 3f9v_A Minichromosome maintena 24.4 30 0.001 31.5 1.9 48 51-98 521-586 (595)
157 1j7q_A CAVP, calcium vector pr 24.0 70 0.0024 20.0 3.2 25 78-102 22-46 (86)
158 3iz5_v 60S acidic ribosomal pr 23.8 1.5E+02 0.005 21.8 5.2 31 70-102 3-33 (113)
159 1rro_A RAT oncomodulin; calciu 23.8 83 0.0028 20.5 3.6 81 33-115 6-89 (108)
160 3vlv_A ALGQ1; sugar binding pr 23.7 1.9E+02 0.0063 24.7 6.7 75 49-125 423-499 (502)
161 2chq_A Replication factor C sm 23.5 95 0.0033 24.1 4.5 64 33-98 161-225 (319)
162 3cuq_A Vacuolar-sorting protei 23.2 49 0.0017 27.4 2.7 35 65-99 70-127 (234)
163 1uhk_A Aequorin 2, aequorin; E 23.1 1.1E+02 0.0039 21.5 4.5 29 74-102 113-141 (191)
164 2bl0_C Myosin regulatory light 23.1 1.7E+02 0.0059 19.4 8.9 41 75-115 84-124 (142)
165 1r6b_X CLPA protein; AAA+, N-t 22.8 58 0.002 29.8 3.5 34 52-97 2-35 (758)
166 2aao_A CDPK, calcium-dependent 22.7 1.9E+02 0.0065 19.8 5.6 23 80-102 37-59 (166)
167 2pmy_A RAS and EF-hand domain- 22.5 92 0.0032 20.1 3.6 26 77-102 34-59 (91)
168 3ezq_B Protein FADD; apoptosis 22.0 1.3E+02 0.0045 22.0 4.7 37 79-116 57-93 (122)
169 4a4j_A Pacszia, cation-transpo 21.9 41 0.0014 20.2 1.6 18 85-102 48-65 (69)
170 2mys_B Myosin; muscle protein, 21.6 1.4E+02 0.0047 20.7 4.6 19 83-101 38-56 (166)
171 2opo_A Polcalcin CHE A 3; calc 21.6 97 0.0033 19.3 3.5 24 77-100 18-41 (86)
172 2e8o_A SAM domain and HD domai 21.5 37 0.0013 23.9 1.5 17 87-103 30-46 (103)
173 2mys_C Myosin; muscle protein, 21.5 1.9E+02 0.0064 19.2 9.1 28 75-102 90-117 (149)
174 3k21_A PFCDPK3, calcium-depend 21.2 94 0.0032 22.8 3.8 38 75-113 57-94 (191)
175 3u0k_A Rcamp; fluorescent prot 21.2 1.4E+02 0.0048 26.9 5.5 57 45-113 289-345 (440)
176 3pxg_A Negative regulator of g 21.0 1.7E+02 0.006 25.3 6.0 55 33-99 55-115 (468)
177 2ns0_A Hypothetical protein; r 20.4 1.6E+02 0.0056 20.7 4.7 35 82-116 20-54 (85)
178 1r6b_X CLPA protein; AAA+, N-t 20.4 1.6E+02 0.0056 26.8 5.9 37 50-98 78-114 (758)
179 2lvv_A Flagellar calcium-bindi 20.4 2.8E+02 0.0095 20.8 9.6 58 42-113 37-95 (226)
180 1jr3_D DNA polymerase III, del 20.2 91 0.0031 25.3 3.8 66 32-97 141-207 (343)
181 1mu5_A Type II DNA topoisomera 20.1 51 0.0017 29.4 2.4 36 43-78 428-463 (471)
182 2qac_A Myosin A tail domain in 20.1 2.1E+02 0.0071 19.2 8.1 82 31-115 30-129 (146)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=6.7e-32 Score=220.13 Aligned_cols=109 Identities=33% Similarity=0.606 Sum_probs=96.4
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030714 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv 105 (173)
..++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 6779999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcccccCCCCCCCCCccccccCCC
Q 030714 106 DPLKAYLMRYREGDTKGSARGGDGSAKRDTIGAL 139 (173)
Q Consensus 106 ~~Lk~~L~~yre~~~~~s~k~~~~~~~~~~~~~~ 139 (173)
++|+.+|++||+..+.+ .+.+.|.+..|.+
T Consensus 88 ~~lk~~L~~yre~~~~k----kr~~~K~~~sg~~ 117 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKR----RKASSRLENLGIP 117 (179)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHhC----ccccchhhccCCC
Confidence 99999999999877543 2234555666644
No 2
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=2.3e-30 Score=189.52 Aligned_cols=92 Identities=72% Similarity=1.197 Sum_probs=86.1
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030714 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv 105 (173)
++++|+.||+|+|.||||+.+|++.+||+||+++|++||++||.||+.+|++.|.+++||||+++||++||+.|||++|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHc
Q 030714 106 DPLKAYLMRYRE 117 (173)
Q Consensus 106 ~~Lk~~L~~yre 117 (173)
++++.+|++|||
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999996
No 3
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=2.7e-30 Score=200.37 Aligned_cols=97 Identities=32% Similarity=0.514 Sum_probs=86.3
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030714 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv 105 (173)
-+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|+
T Consensus 3 e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 3 ERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp --------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred CccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcccccC
Q 030714 106 DPLKAYLMRYREGDTKG 122 (173)
Q Consensus 106 ~~Lk~~L~~yre~~~~~ 122 (173)
++|+.+|+.||+..+.+
T Consensus 83 ~~lk~~l~~yr~~~~~k 99 (128)
T 2byk_B 83 PSLTQDLEVYRKVVKEK 99 (128)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999877543
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=6.7e-23 Score=145.35 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=64.7
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 30 D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.+.||+|+|.||||+++| +++||+||+++|++|+++||+||+++|++.|.+++||||+++||++|++.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 368999999999999999 789999999999999999999999999999999999999999999998753
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=2.2e-21 Score=154.85 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=72.0
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhh
Q 030714 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (173)
Q Consensus 31 ~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~ 106 (173)
..||+++|.||||+.||. .|||+||+++|++|+++|+.+|+++|++.|+++|||||+++||+|||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999986 899999999999999999999999999999999999999999999999999999876
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=1.1e-19 Score=125.45 Aligned_cols=66 Identities=33% Similarity=0.443 Sum_probs=63.7
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|++.|.++|||||+++||.+|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 4789999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.78 E-value=3e-19 Score=135.30 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=77.9
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhH
Q 030714 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDP 107 (173)
Q Consensus 28 e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~ 107 (173)
.+|..||+++|.||+|.. ...+||+|+.++|.+|+.+|+.+|+.+|...|+++|||||+++||++||+++|+..|+.+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 368899999999999999 368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 030714 108 LKAYLMRYR 116 (173)
Q Consensus 108 Lk~~L~~yr 116 (173)
++.++++|.
T Consensus 81 l~~l~~~~l 89 (111)
T 3b0c_T 81 LHVLVERHL 89 (111)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999999994
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.73 E-value=4.9e-19 Score=139.13 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=63.6
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcCchhhHHHHH---hcCCcc
Q 030714 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKC-QKEKRKTINGDDLLWAMA---TLGFED 103 (173)
Q Consensus 28 e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c-~~~kRKTIs~eDVl~AL~---~LgF~~ 103 (173)
..+..||+|+|.||||.. |+..+|+++|..+|++|++.||.+|+.+|+..| +..+||||+++||.+|+. .++|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 367899999999999998 778899999999999999999999999999999 999999999999999998 567777
Q ss_pred hhhHHHHHHHHHHcccccC
Q 030714 104 YIDPLKAYLMRYREGDTKG 122 (173)
Q Consensus 104 yv~~Lk~~L~~yre~~~~~ 122 (173)
++.|.+.++..|++..+++
T Consensus 94 divP~ki~l~~~~~~~~~~ 112 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLN 112 (140)
T ss_dssp TTSCSCC------------
T ss_pred ccccchhhHHHHHHHHHhc
Confidence 7779999999999876543
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.71 E-value=1.8e-17 Score=132.27 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 25 ~~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
.++.+|+.||+++|.||||+. ...|||+||+++|++|+++|+.+|+.+|.+.|++++||||+++||++||+.
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 456688999999999999999 467999999999999999999999999999999999999999999999985
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.68 E-value=7.8e-17 Score=123.09 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=69.6
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030714 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 28 e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv 105 (173)
..+..||+|+|.||||.. |+..+||+||..+|++|+++||.+|+.+|++.|+.++||||+++||..|++..+..+|.
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 345679999999999976 77889999999999999999999999999999999999999999999999876654554
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.67 E-value=7.9e-17 Score=118.84 Aligned_cols=81 Identities=23% Similarity=0.274 Sum_probs=69.5
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030714 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv 105 (173)
....+..||+|.|.||||.. |+..+||+||..+|.+|++.||.+|+.+|++.|++++||||+++||..|++..++.+|.
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34466789999999999998 55679999999999999999999999999999999999999999999999988888776
Q ss_pred hH
Q 030714 106 DP 107 (173)
Q Consensus 106 ~~ 107 (173)
..
T Consensus 92 ~d 93 (97)
T 1n1j_B 92 ID 93 (97)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.66 E-value=1.1e-16 Score=115.33 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=72.6
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030714 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~y 104 (173)
+++....||+++|.||+|.... .+||+|+.+.|.+|+++|+..|+.+|...|++++||||+++||.+||+.+||.-|
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred ccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 5677888999999999999865 6899999999999999999999999999999999999999999999999998766
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.66 E-value=1.7e-16 Score=118.59 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=71.8
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030714 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 25 ~~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~y 104 (173)
.+++....||+++|.||++.... .+||+|+.++|++|+++|+..|+.+|...|++++||||+++||.+||+.++|.-|
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 56888889999999999999865 6899999999999999999999999999999999999999999999999999766
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.60 E-value=2e-15 Score=112.49 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=73.5
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030714 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 25 ~~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~y 104 (173)
..++.+..||+++|.||+|.... .+||.|+.+.|.+|+++|+..|+.+|...|++++||||+++||.+||+.+||+.|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 46788888999999999999975 5899999999999999999999999999999999999999999999999999766
No 15
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.60 E-value=2.3e-15 Score=104.63 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=61.3
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
.||+++|.||+|+. ...+||+++.++|++|++.|+.+|+.+|+..|++.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999997 36799999999999999999999999999999999999999999999986
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.58 E-value=2.9e-15 Score=111.68 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=64.4
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030714 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 25 ~~~e~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~y 104 (173)
..++....||+++|.||+|.... .+||.|+.+.|.+|+++|+..|+.+|...|++++||||+++||.+||+.+||..|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 22 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp --------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 45777888999999999999875 5899999999999999999999999999999999999999999999999998765
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.36 E-value=6e-13 Score=98.37 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=59.4
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhh
Q 030714 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (173)
Q Consensus 30 D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~ 106 (173)
...||.+.|.||||.. ++..+||.||..++.++++.|+.+|+..|...|++.+||||+++||..|++.-+..+|..
T Consensus 9 ~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred CCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 4689999999999975 445699999999999999999999999999999999999999999999998655555544
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.17 E-value=1e-10 Score=83.68 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred cccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 30 DRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 30 D~~LP~A~I~RImK~~LP---~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
++.||++.+.||+|+... .+.|++.+|..+||++++.|+.-|...|+..|.+.||+||.++||.-|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 578999999999999943 36899999999999999999999999999999999999999999999987654
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.04 E-value=5.5e-10 Score=80.78 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=64.0
Q ss_pred ccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 31 RYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 31 ~~LP~A~I~RImK~~LP-----~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
+.||++.+.||+|+... .+.|++.+|..+||++++.|+..|...||..|.+.||+||.++||.-|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46899999999999873 26899999999999999999999999999999999999999999999976544
No 20
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.02 E-value=4.7e-10 Score=83.76 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCcccccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 26 VREQDRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~------~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
....++.||++.+.||+|+...+ +.+++.+|..+||++++.|+..|...||..|.+.||+||.++||..|..
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 34578899999999999999842 6899999999999999999999999999999999999999999998863
No 21
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.95 E-value=1e-09 Score=86.40 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=66.2
Q ss_pred CcccccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCC
Q 030714 27 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 27 ~e~D~~LP~A~I~RImK~~LP-----~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF 101 (173)
...++.||++.+.||||+... .+.+++.+|+++||++++.|+..|...||..|.+.||+||.++||..|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 457899999999999999873 268999999999999999999999999999999999999999999999876554
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=87.57 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=65.3
Q ss_pred CcccccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 27 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 27 ~e~D~~LP~A~I~RImK~~LP-----~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
...++.||++.+.||||+... .+.+++.+|+++||++++.|+.-|...||..|.+.||+||.++||..|+.--|
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 457889999999999999873 25799999999999999999999999999999999999999999999876433
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.94 E-value=1.5e-09 Score=84.93 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=67.5
Q ss_pred CcccccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 27 REQDRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 27 ~e~D~~LP~A~I~RImK~~LP---~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
...++.||++.+.||+++... .+.+++.+|+.+||++++.|+..|...||..|.+.||+||.++||..|...-|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 457889999999999999942 46899999999999999999999999999999999999999999999986544
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.80 E-value=2.2e-08 Score=70.38 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=61.2
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 31 ~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
-.||+++|.+|.++..- .++++|+...|.+-++..+..|+.+|...+++.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 36999999999999964 489999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.77 E-value=1.4e-08 Score=77.37 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=65.6
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 37 ~I~RImK~~LP~-~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.|.||+++...+ ++.||++++.+|.+.+..|+..|+..+...|++.|||||+++||..++++. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 588999998753 577999999999999999999999999999999999999999999999874 4556666666
Q ss_pred Hc
Q 030714 116 RE 117 (173)
Q Consensus 116 re 117 (173)
.+
T Consensus 106 ~~ 107 (113)
T 4dra_A 106 SE 107 (113)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.8e-08 Score=72.15 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 37 NISRIMKKALPAN-GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 37 ~I~RImK~~LP~~-~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.|.+|+.+.++.. +.||+++..+|.+.+..|+..|+..+...|++.|||||+++||.-++++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5889999998865 88999999999999999999999999999999999999999999998763
No 27
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.66 E-value=3.8e-08 Score=77.43 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 37 ~I~RImK~~LP~-~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.|.||+++.... ++.||+++..+|.+.+..|+..|+..+...|++.|||||+++||..++++.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn 87 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 478899987543 678999999999999999999999999999999999999999999999875
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.62 E-value=8e-08 Score=72.42 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=58.0
Q ss_pred HHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 37 NISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 37 ~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.|.||+++... .+.++++++..+|.+.+..|+.-|+..|...|++.|||||+.+||..|+++.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 48899998864 2468999999999999999999999999999999999999999999999874
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.50 E-value=3.4e-07 Score=70.24 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
-.+.||.+.|.|+||+.--. .||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~a-~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTSC-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 46889999999999998432 4999999999999999999999999999999999999999999999873
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.49 E-value=3.4e-07 Score=70.74 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=64.6
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
-.+.||.+.|.|+||+.-....||+.+|...|..+.+-|...|...|...|++.+|++|+++||..|+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4689999999999999864345999999999999999999999999999999999999999999999874
No 31
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.47 E-value=6.5e-07 Score=62.47 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 37 NISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 37 ~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
.|.||+|+..- .+++.++...|.+++..++.-|..+|...|++.|||||+.+||..|++.
T Consensus 6 ~i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 58999999864 4899999999999999999999999999999999999999999999874
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.47 E-value=4.3e-07 Score=70.23 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..+.||.+.|.|+||+.-.. .||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNYA-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTSS-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 56899999999999997432 4999999999999999999999999999999999999999999999873
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.45 E-value=5e-07 Score=69.07 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=63.8
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|...|...|...|++.+|++|+++||..|+..
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4688999999999999864 35999999999999999999999999999999999999999999999873
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.45 E-value=4e-07 Score=70.58 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=63.7
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
-.+.||.+.|.|+||+.--. .||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNYA-QRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCSC-SEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 56899999999999997442 4999999999999999999999999999999999999999999999873
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.39 E-value=7.5e-07 Score=70.61 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..+.||.+.|.|+||+.-.. .||+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~a-~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNYS-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTSC-SEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHccccc-cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 46889999999999998442 4999999999999999999999999999999999999999999999873
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=5.2e-07 Score=69.38 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~y 104 (173)
|||.|+.+.+.+..++|+.-|...|...|++.+||||+++||.-||+..|-.-|
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 455555555555555666666778888999999999999999999999886544
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.27 E-value=2.2e-06 Score=66.09 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=59.3
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 36 A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
.-|+|++|++-| +..||.+|...|...+..+..-|+.||...|..++|+||+..||..|++-|=
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 458999999998 5789999999999999999999999999999999999999999999986543
No 38
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.25 E-value=2.3e-06 Score=69.67 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=63.7
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..+.||.+.|.|+||+.-....||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3578999999999999843235999999999999999999999999999999999999999999999873
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.23 E-value=2.9e-06 Score=65.66 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 37 NISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 37 ~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
-|+|++|++-| +..||.+|...|+..+..+..-|+.||...+..++|+||+..||..|++-|=
T Consensus 41 YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 41 YVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 59999999998 5789999999999999999999999999999999999999999999986543
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.6e-06 Score=71.86 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=63.7
Q ss_pred cccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 30 DRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 30 D~~LP~A~I~RImK~~LP~------~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
.+.+|+.++.|++++...+ +.+++.+|..+||++++.|+.-|...+|-.|.+.||.||.+.|+..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4789999999999998653 5799999999999999999999999999999999999999999999987554
No 41
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.04 E-value=2.4e-05 Score=56.64 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred cccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 30 DRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 30 D~~LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
+..+|...|.||++.... ++.||++||..++.+....||.--...|.+.++.++..+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 456899999999998886 5789999999999999999999999999999998999999999998876543
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=2.7e-06 Score=71.81 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=53.5
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 40 RIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 40 RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
||+|... ..|||.++.+.+.+..++|+.-|...|...|++.+||||+++||..||+.+|
T Consensus 169 RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5666554 3589999999999999999999999999999999999999999999999765
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.97 E-value=2.1e-05 Score=63.90 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=58.3
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 36 A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
.-|+|++|++-| +..||+||...|...+..+..-|+.+|...+...+|+||+.+||..|++-
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 358999999998 57899999999999999999999999999999999999999999999973
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.87 E-value=6.8e-05 Score=53.29 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=62.2
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
-|++..+..++|+.-| +..+..|+.++|.++|.+||.-++..|-..|++.+-.||...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999977 68999999999999999999999999999999999999999999998874
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.87 E-value=6.5e-05 Score=53.93 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=62.6
Q ss_pred CcccccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 27 REQDRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 27 ~e~D~~LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
++.+..+|...|.||++.... ++.||++||..++.+....||.--...|...++.++-..|..+|+-+.+-.|
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 456778999999999999987 4789999999999999999999999999999988999999999998876543
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.50 E-value=0.00042 Score=50.38 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=60.9
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcCchhhHHHHHhcC
Q 030714 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEK-RKTINGDDLLWAMATLG 100 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~k-RKTIs~eDVl~AL~~Lg 100 (173)
.||++.|.|||...+. ..++.+...+|.-.+.+||--|..+|.+++.+.+ +.-|.|.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~~--~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 5999999999999985 6899999999999999999999999999998876 55899999999988764
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0042 Score=47.53 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=60.5
Q ss_pred cCchhHHHHHHHhhCC---C---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcCchhhHHHHHhcCCc
Q 030714 32 YLPIANISRIMKKALP---A---NGKIAKDAKDTVQECVSEFISFITSEASDKCQKE---KRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP---~---~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~---kRKTIs~eDVl~AL~~LgF~ 102 (173)
.+|+.++.|++|+... . +.+++.+|..+||++++.|+-.|...+|-.|.+. |-|-|+.+ +...+.. -+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHH
Confidence 3788888888887542 2 6899999999999999999999999999777766 34567653 5555432 134
Q ss_pred chhhHHHHHHHHHHcc
Q 030714 103 DYIDPLKAYLMRYREG 118 (173)
Q Consensus 103 ~yv~~Lk~~L~~yre~ 118 (173)
+|.+.+-...-.|-|.
T Consensus 79 ~~l~~i~rdav~yaeh 94 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEH 94 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555555556554
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0071 Score=44.07 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=38.6
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030714 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDK 78 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~ 78 (173)
||+..|.||++.... ++.||++||..++++....||.---..|.+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ 48 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQS 48 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999997775 4789999999999999999987655555433
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.33 E-value=0.28 Score=40.51 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=49.9
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~----eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
++...+..|++..+. .+..++.++.+.|.+.+. -.+..+...|...|..+++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 445666777775543 245799999999988876 244555666777888889999999999999986
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=87.21 E-value=1.7 Score=42.62 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 29 ~D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
..+.+|...|.|++|.... -||+..|-..|.-..+-...-|...|...|+..+++.|++.||..|+.
T Consensus 101 ~~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CCccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 3578999999999977765 499998887777666655555666677778888999999999999986
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.46 E-value=1.2 Score=38.94 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=49.1
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECV-S---EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca-~---eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
+....+..+++..+. .+..++.++...+.+.+ . -....|...|...|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 445666777765542 13569999998888877 2 245556677888999999999999999999864
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.87 E-value=2.5 Score=34.32 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=50.6
Q ss_pred hhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCC
Q 030714 35 IANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 35 ~A~I~RImK~~LP---~~~rISkDA~~al~~ca~------eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF 101 (173)
...+..|++..+. ....++.++.+.+.+.+. -++..+...|...|..+++.+|+.+||..|++.+..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 5666666665442 145799999998888876 455566667788888888999999999999987643
No 53
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.47 E-value=3.7 Score=33.51 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=52.0
Q ss_pred chhHHHHHHHhhCCC---CCcccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 34 PIANISRIMKKALPA---NGKIAKDAKDTVQECV------------SEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 34 P~A~I~RImK~~LP~---~~rISkDA~~al~~ca------------~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
....+..+++..+.. ...++.++.+.+.+.+ --++..+...|...|..+++.+|+.+||..|++.
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 194 TKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp BHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 345566666665432 2368999999888887 2345556667778888888999999999999987
Q ss_pred cCCcchhh
Q 030714 99 LGFEDYID 106 (173)
Q Consensus 99 LgF~~yv~ 106 (173)
.....+..
T Consensus 274 ~~~~~~~~ 281 (389)
T 1fnn_A 274 VLFGISEE 281 (389)
T ss_dssp HSCCCCHH
T ss_pred HhhhhHHH
Confidence 76554433
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.54 E-value=6.5 Score=31.72 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=52.0
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcc
Q 030714 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (173)
Q Consensus 33 LP~A~I~RImK~~LP---~~~rISkDA~~al~~ca~------eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~ 103 (173)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...+..+++.+|+.+||..|++.+....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 344556677765332 135789999988888776 23444666788888888899999999999998775444
Q ss_pred hhh
Q 030714 104 YID 106 (173)
Q Consensus 104 yv~ 106 (173)
+..
T Consensus 277 ~~~ 279 (386)
T 2qby_A 277 VRD 279 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=77.86 E-value=1.9 Score=28.67 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 57 KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 57 ~~al~~ca~eF----I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.+.|.+.+.-| |..|..+|...|.++++..|+.+|+..||+..
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 44455544444 67788888889999999999999999999753
No 56
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.20 E-value=17 Score=32.88 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHHH
Q 030714 50 GKIAKDAKDTVQECVS-------------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 116 (173)
Q Consensus 50 ~rISkDA~~al~~ca~-------------eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~yr 116 (173)
..++.+|...|.+.+. --+.-|...|...|..+++.+|+.+||.+|++.-.. -+...++.|+...+
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~~-i~~~~~e~~l~~~~ 391 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKP-LEKQLADWYIERKK 391 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhhh-hHHHHHHHHhcccc
Confidence 4699999999888653 234445567888999999999999999999964221 12233445555443
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=75.20 E-value=3.5 Score=30.36 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
+++..++.+|+. |.+.|.+.+...|.++||+.||=+
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHh
Confidence 578888888876 777899999999999999999854
No 58
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=74.74 E-value=7.4 Score=28.10 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
+++..++.+|.. |...|.+.+...|.++|++.||=+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~ 40 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLN 40 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHc
Confidence 578888888876 777889999999999999999843
No 59
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=74.61 E-value=3 Score=30.44 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
++++.++.+|+. |...|.+.+...|.++|++.||=
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl 39 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLV 39 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 678888888876 77788889999999999999984
No 60
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.09 E-value=16 Score=29.53 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 49 NGKIAKDAKDTVQECVSEF-----------------------ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 49 ~~rISkDA~~al~~ca~eF-----------------------I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
++.|++++.+.+.+.+... ...|...|...|.-++|..|+.+||..++..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5668888888887655322 1233445666777789999999999998874
No 61
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=71.70 E-value=9.3 Score=29.96 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=51.6
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhh
Q 030714 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (173)
Q Consensus 33 LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDV 92 (173)
+|.+.+.|+.+.+.. .-|.|+-..-+...++.=+.-|.-.|.+.|+.++|.+|.+.|+
T Consensus 3 m~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 577889999999975 5677888888999999999999999999999999999999886
No 62
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=71.35 E-value=3.9 Score=30.11 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
+++..++.+|.. |...|.+.+...|.++||+.||=.
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 42 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLR 42 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHh
Confidence 688888888876 777899999999999999999854
No 63
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=70.47 E-value=4.1 Score=27.45 Aligned_cols=30 Identities=33% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 71 ITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 71 LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
|..+|...|.++++..|+.+|+..|+++.-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 444566777788889999999999998763
No 64
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=69.64 E-value=4.3 Score=27.90 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCC
Q 030714 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 68 I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF 101 (173)
|.-|..+|.-.|.++++..|+.+|+..|++..-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 6667777888888889999999999999987543
No 65
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=68.90 E-value=3.8 Score=29.61 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHH
Q 030714 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (173)
Q Consensus 52 ISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL 96 (173)
++++++.+|+. |.+.|.+.+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 45666666655 7778888899999999999998
No 66
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=68.55 E-value=3.9 Score=27.39 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 68 I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
|..|..+|...|.++++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 455667788888888899999999999998653
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.43 E-value=12 Score=30.18 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 49 NGKIAKDAKDTVQECVSE-------FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 49 ~~rISkDA~~al~~ca~e-------FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
.+.|++++.+.|.+.+.. -+..+...|...|..++|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 358999999999887653 344555567778888899999999999998743
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.10 E-value=14 Score=30.06 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=45.6
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCC
Q 030714 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS---E---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 33 LP~A~I~RImK~~LP---~~~rISkDA~~al~~ca~---e---FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF 101 (173)
|....+..|++..+. ....++.++.+.+.+.+. - .+..+...|...|. ++.+|+.+||..|++.+..
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 345667777776432 135799999888888776 1 23334445666665 6678999999999987743
No 69
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=65.90 E-value=5.7 Score=27.35 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 68 I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
|..|..+|.-.|.++.+..|+.+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44566678888888889999999999999753
No 70
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=60.67 E-value=11 Score=30.20 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=55.3
Q ss_pred cccc--cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhh
Q 030714 28 EQDR--YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (173)
Q Consensus 28 e~D~--~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDV 92 (173)
.+.. -+|.+.+.||.+.+.. .-|.|+-..-+...++.=+.-|.-.|.+.|+.++|.+|.+.|+
T Consensus 20 ~~~Mm~vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 20 IETMLRPKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp -CCTTSCTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHhcCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 3455 7899999999999975 6688999999999999999999999999999999999999886
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=57.87 E-value=14 Score=26.84 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=39.9
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 33 LP~A~I~RImK~~LP~-~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
++...+..+++..+.. +..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455566666655421 3458898888887766544444444444444433 6899999999875
No 72
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=56.63 E-value=15 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
..+|.++..+|.+ |...|++.+...|+.+||+.||=.-+
T Consensus 80 ~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 80 IVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 4578877777766 67778888999999999999986443
No 73
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=56.21 E-value=46 Score=22.86 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
+....-.++.-.|+.+++..+|..+|..--.+.++..+.
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555667778999999999999987544444544443
No 74
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=55.70 E-value=8.9 Score=29.68 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
+++..++.+|+. |.+.|...+...|.++|++.||=+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~ 59 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLD 59 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHH
Confidence 577788888776 677788889999999999999853
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.56 E-value=35 Score=28.08 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=45.2
Q ss_pred hHHHHHHHhhCC-CCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcc
Q 030714 36 ANISRIMKKALP-ANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (173)
Q Consensus 36 A~I~RImK~~LP-~~~rISkDA~~al~~ca~---eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~ 103 (173)
..+..|++.... -+..++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 345556654321 135688888887766432 23334445566777777888899999999999887653
No 76
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=53.40 E-value=33 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=28.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..+|..++.+|++ |...++..+...|+.+||+.||=.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 3567776666655 777788888999999999999854
No 77
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=53.25 E-value=67 Score=23.86 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=49.0
Q ss_pred CCcccccCchhHHHHHHHhhCCC---CCcccHHHHHHHHHHH----------HHHHHHHH-----HHHHHHHHhcCCCCc
Q 030714 26 VREQDRYLPIANISRIMKKALPA---NGKIAKDAKDTVQECV----------SEFISFIT-----SEASDKCQKEKRKTI 87 (173)
Q Consensus 26 ~~e~D~~LP~A~I~RImK~~LP~---~~rISkDA~~al~~ca----------~eFI~~Lt-----seA~d~c~~~kRKTI 87 (173)
....+-.|...-+..+++...+. ...++++....|-+.. .+|+..+. .+|....- ++.-+|
T Consensus 14 ~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD-d~~G~I 92 (174)
T 2i7a_A 14 LVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGVL 92 (174)
T ss_dssp SCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC-SBTTBE
T ss_pred cCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc-CCCCcC
Confidence 44455566666666676665321 1234443332222221 35554443 35667777 788899
Q ss_pred CchhhHHHHHhc----CCcchhhHHHHHHHH
Q 030714 88 NGDDLLWAMATL----GFEDYIDPLKAYLMR 114 (173)
Q Consensus 88 s~eDVl~AL~~L----gF~~yv~~Lk~~L~~ 114 (173)
+.+++..+|..+ |+.-=-+.++..+..
T Consensus 93 ~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~ 123 (174)
T 2i7a_A 93 LSSDLWKAIENTDFLRGIFISRELLHLVTLR 123 (174)
T ss_dssp EGGGHHHHHHTCGGGTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHhccCCCCCHHHHHHHHHH
Confidence 999999999999 875323334444433
No 78
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=52.55 E-value=42 Score=22.08 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=47.2
Q ss_pred CchhHHHHHHHhhCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHH
Q 030714 33 LPIANISRIMKKALPANGKIAKDA-KDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPL 108 (173)
Q Consensus 33 LP~A~I~RImK~~LP~~~rISkDA-~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L---gF~~yv~~L 108 (173)
+....|.++++..=. +..|+-+- ..++.. ...-.. -...+....-.++.-.|+.+++..+|..+ |..--.+.+
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~eF~~~~~~-~~~~~~-~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~ 82 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKRFFHLVGL-KGKTDA-QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTET 82 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHHHHHHHTC-TTCCHH-HHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHH
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHHHHHHHhh-ccCcHH-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 556778888887643 55666432 111110 000000 01245566667788899999999999998 766555556
Q ss_pred HHHHHHH
Q 030714 109 KAYLMRY 115 (173)
Q Consensus 109 k~~L~~y 115 (173)
+..+..+
T Consensus 83 ~~~~~~~ 89 (109)
T 5pal_A 83 KALLAAG 89 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655554
No 79
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=51.52 E-value=40 Score=24.45 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
..+|.++..+|.+ |...|++.+...|+.+||+.||-.-
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 4578888888776 6677888899999999999998543
No 80
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.36 E-value=33 Score=25.42 Aligned_cols=61 Identities=2% Similarity=-0.001 Sum_probs=36.9
Q ss_pred hhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 35 IANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 35 ~A~I~RImK~~LP-~~~rISkDA~~al~~ca~----eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
...+.++++..+. .+..++.++.+.|.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3445555555432 235789999888877654 3333333 3444454444 4699999998875
No 81
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=48.95 E-value=22 Score=25.85 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=40.5
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHH
Q 030714 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL 96 (173)
|....+..+++..+. .+..++.++...|.+.+.--..++-......+ ..++++|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 344566666665542 13568899888888877655555554444333 3345689999998876
No 82
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=48.75 E-value=16 Score=28.75 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 67 FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
-|..|..+|...|..+++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 466677888888989999999999999999754
No 83
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=48.66 E-value=36 Score=25.33 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=41.7
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHH
Q 030714 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF-ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 108 (173)
Q Consensus 30 D~~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eF-I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~L 108 (173)
+..|....+.|+-+=. . ..++.+.+...|.+..+.- +..| .++....-.++.-+|+.+++..+|..+|+.--...+
T Consensus 19 ~~~l~~~~~~~l~~f~-~-~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~ 95 (197)
T 3pm8_A 19 HVELSSTLLKNLKNFK-K-ENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDI 95 (197)
T ss_dssp SCCCCTTHHHHHHHTT-T-SCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHH
T ss_pred CCCCCHHHHHHHHHHH-H-ccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHH
Confidence 3445555666654422 2 2356665555444332221 2222 223445556677889999999999999875333344
Q ss_pred HHHH
Q 030714 109 KAYL 112 (173)
Q Consensus 109 k~~L 112 (173)
+..+
T Consensus 96 ~~l~ 99 (197)
T 3pm8_A 96 HQVL 99 (197)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 84
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=45.70 E-value=14 Score=24.73 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=17.9
Q ss_pred cCchhhHHHHHhcCCcchhhH
Q 030714 87 INGDDLLWAMATLGFEDYIDP 107 (173)
Q Consensus 87 Is~eDVl~AL~~LgF~~yv~~ 107 (173)
=+++||..-|+.+||++|++.
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~ 25 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDR 25 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHH
Confidence 368999999999999988765
No 85
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=43.45 E-value=89 Score=22.47 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHH
Q 030714 38 ISRIMKKALPANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (173)
Q Consensus 38 I~RImK~~LP~~~rISkDA~~al~~ca~---eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (173)
|.+-++.-.. .-++.+.+...+.+..+ +-+..| .++...+-.++.-+|+.+++..+|..+|+.. ..++..+..
T Consensus 6 ~~~~l~~~~~-~~~l~~~~l~~~~~~l~~~~~~~~~l-~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~--~~~~~~~~~ 81 (180)
T 3mse_B 6 VLNNMKSYMK-HSNIRNIIINIMAHELSVINNHIKYI-NELFYKLDTNHNGSLSHREIYTVLASVGIKK--WDINRILQA 81 (180)
T ss_dssp HHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH--HHHHHHHHH
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHccCCHHHHHHH-HHHHHHhCCCCCCcCCHHHHHHHHHHcCCCH--HHHHHHHHH
Confidence 3334444433 23566655555544332 222222 2344556667778999999999999999863 444444433
No 86
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=43.09 E-value=31 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
.+|..+..+|.. |...++.-+...|+.+|++.||=.
T Consensus 79 ~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 79 HYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp EECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 466666665554 677777778899999999999853
No 87
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=42.70 E-value=69 Score=20.94 Aligned_cols=82 Identities=16% Similarity=0.019 Sum_probs=46.2
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHH
Q 030714 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPL 108 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L---gF~~yv~~L 108 (173)
.+....|.+|++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSAD-DIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhHH-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 355667888888754 4556665321111100000000 11245556667778899999999999999 554334455
Q ss_pred HHHHHHH
Q 030714 109 KAYLMRY 115 (173)
Q Consensus 109 k~~L~~y 115 (173)
+..+..+
T Consensus 84 ~~~~~~~ 90 (109)
T 1bu3_A 84 KAFLKAG 90 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
No 88
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=41.92 E-value=17 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=19.3
Q ss_pred CcCchhhHHHHHhcCCcchhhHH
Q 030714 86 TINGDDLLWAMATLGFEDYIDPL 108 (173)
Q Consensus 86 TIs~eDVl~AL~~LgF~~yv~~L 108 (173)
.=+++||..-|+.+||++|++..
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F 31 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIF 31 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHH
Confidence 35789999999999999987654
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=41.31 E-value=1e+02 Score=24.99 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=48.4
Q ss_pred CchhHHHHHHHhh----CCCCCcccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 33 LPIANISRIMKKA----LPANGKIAKDAKDTVQECVS---------EFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 33 LP~A~I~RImK~~----LP~~~rISkDA~~al~~ca~---------eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
|....+..|++.. .. ...++.++...+.+.+. -++..+...|...+..+++.+|+.+||..++..+
T Consensus 215 l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4445666776543 33 23588888888888777 3666777777788888888999999999898776
Q ss_pred C
Q 030714 100 G 100 (173)
Q Consensus 100 g 100 (173)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 4
No 90
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=41.08 E-value=52 Score=21.58 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=46.1
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhH
Q 030714 32 YLPIANISRIMKKALPANGKIAKDA-KDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDP 107 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA-~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L---gF~~yv~~ 107 (173)
.+....|.++++..= .+..|+-+- ..++.. ...-.. -...+....-.++.-.|+.+++..+|..+ |..--.+.
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~-~~~~~~-~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 82 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGL-SSKTPD-QIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTC-TTCCHH-HHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhc-CCCcHH-HHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence 355667888887763 355666432 222110 000000 02235556667778899999999999999 55544455
Q ss_pred HHHHHHHH
Q 030714 108 LKAYLMRY 115 (173)
Q Consensus 108 Lk~~L~~y 115 (173)
++..+..+
T Consensus 83 ~~~~~~~~ 90 (109)
T 3fs7_A 83 TKAFLAAG 90 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
No 91
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=40.70 E-value=1.1e+02 Score=25.52 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=44.9
Q ss_pred chhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCCcCchhhHHHH
Q 030714 34 PIANISRIMKKALPA-NGKIAKDAKDTVQECVSE----FISFITSEASDKCQKE------------KRKTINGDDLLWAM 96 (173)
Q Consensus 34 P~A~I~RImK~~LP~-~~rISkDA~~al~~ca~e----FI~~LtseA~d~c~~~------------kRKTIs~eDVl~AL 96 (173)
+......|++..+.. +..++.++...|.+.+.- -|..|...|...+.++ ....|+.+|+..|+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 344455666655532 346888888777776543 4556666666555554 45689999999999
Q ss_pred HhcCCc
Q 030714 97 ATLGFE 102 (173)
Q Consensus 97 ~~LgF~ 102 (173)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 876543
No 92
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=40.33 E-value=20 Score=24.15 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 49 NGKIAKDAKDTVQECVSEFISFITSEA-SDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 49 ~~rISkDA~~al~~ca~eFI~~LtseA-~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
.+.++.||...|.+. =-||.--.... -..|+..|...|+.+.+..|-+.++
T Consensus 3 ~l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKV-PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 356888998888873 34554444433 3778889999999999999876554
No 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=40.26 E-value=26 Score=27.23 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=39.3
Q ss_pred hHHHHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 36 ANISRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 36 A~I~RImK~~LP~~~rISkDA-~~al~~ca~----eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
.....|++..+. ...++.++ ...+.+... --|..+..+|...|...++++|+.+||..|+++.-
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344456665543 23454444 333333221 23445666777788888899999999999998653
No 94
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.78 E-value=46 Score=29.14 Aligned_cols=67 Identities=10% Similarity=0.234 Sum_probs=44.2
Q ss_pred CchhHHHHHHHhhCC--------CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCCcCchhhHHHHHh
Q 030714 33 LPIANISRIMKKALP--------ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKE--KRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~I~RImK~~LP--------~~~rISkDA~~al~~ca~----eFI~~LtseA~d~c~~~--kRKTIs~eDVl~AL~~ 98 (173)
++...+..|++..+. ....|+.++.+.|.+.+. +.++.|- .+...|... ++++|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 556667777776654 245799999999988753 3333333 233344322 5678999999999986
Q ss_pred cC
Q 030714 99 LG 100 (173)
Q Consensus 99 Lg 100 (173)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 95
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=39.53 E-value=84 Score=21.02 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
+....-.++.-.|+.+++..+|..+|..-=.+.++..+..+
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44555566778899999999999998654445566666555
No 96
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.02 E-value=24 Score=31.77 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 39 SRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 39 ~RImK~~LP~~~rISkDA-~~al~~ca~----eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..|++-.+. +..++.|. .+.|.+.+. -=|..|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 359 ~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 359 KKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 445554443 34455443 344444332 346777888888999999999999999999874
No 97
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=38.83 E-value=38 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=31.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcCchhhHHHHHh
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQ-KEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~LtseA~d~c~-~~kRKTIs~eDVl~AL~~ 98 (173)
..+|.+++.+|++ |...++ +-+...|+.+||+.||=.
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 4588888888877 777888 889999999999999853
No 98
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=38.76 E-value=13 Score=26.56 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.7
Q ss_pred cCchhhHHHHHhcCCcchhhHH
Q 030714 87 INGDDLLWAMATLGFEDYIDPL 108 (173)
Q Consensus 87 Is~eDVl~AL~~LgF~~yv~~L 108 (173)
-+.+||..-|+.+||.+|++..
T Consensus 20 Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 20 WSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp CCTTHHHHHHHHTTCTTTTTTT
T ss_pred CCHHHHHHHHHHcCCHHHHHHH
Confidence 4899999999999999999765
No 99
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=38.73 E-value=17 Score=33.15 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=41.3
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC--chhhHHHHHhc
Q 030714 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMATL 99 (173)
Q Consensus 43 K~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs--~eDVl~AL~~L 99 (173)
|+++.+.--|-+|.+.+|++||...=.||.......-.+++++++. -.+|..+|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444468899999999999999999988776665555555554 45777777753
No 100
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.43 E-value=27 Score=31.06 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 67 FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
=|..|..+|.-.|.++++..|+.+|+..|++.
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36677778888888999999999999999874
No 101
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.09 E-value=27 Score=30.91 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 67 FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
=|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46777788888899999999999999999875
No 102
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=38.07 E-value=15 Score=24.15 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=17.4
Q ss_pred cCchhhHHHHHhcCCcchhhH
Q 030714 87 INGDDLLWAMATLGFEDYIDP 107 (173)
Q Consensus 87 Is~eDVl~AL~~LgF~~yv~~ 107 (173)
=+++||..-|+.+||++|++.
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~ 27 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSE 27 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHH
Confidence 478999999999998877653
No 103
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.14 E-value=25 Score=31.23 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 67 FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
-|..|..+|.-.|.+++++.|+.+|+..|+++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 467777888888888999999999999999753
No 104
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.11 E-value=24 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 67 FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
=|.-|..+|.-.|.+++|+.|+.+|+..|+++
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 36677788888898999999999999999875
No 105
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=36.61 E-value=50 Score=19.35 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=26.2
Q ss_pred HHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 76 ~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
....-.++.-+|+.+++..+|..+|..--...++..+..+
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3444556677899999999999888654444455444443
No 106
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.41 E-value=43 Score=21.79 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=25.0
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH
Q 030714 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF 67 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eF 67 (173)
.+..++|.|++...- ....|+.|.++-|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 467888899888542 11268888888888877665
No 107
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=35.96 E-value=71 Score=20.82 Aligned_cols=81 Identities=15% Similarity=0.042 Sum_probs=46.3
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHHH
Q 030714 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (173)
Q Consensus 33 LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L---gF~~yv~~Lk 109 (173)
+....|..|++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.++
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGLASKSLD-DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK 83 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhCChhHHH-HHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence 45667888887753 4556765422211110000000 12345566667788899999999999999 5543344555
Q ss_pred HHHHHH
Q 030714 110 AYLMRY 115 (173)
Q Consensus 110 ~~L~~y 115 (173)
..+..+
T Consensus 84 ~~~~~~ 89 (108)
T 2pvb_A 84 AFLADG 89 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 108
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.96 E-value=53 Score=28.60 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
+++..++.+|.. |.+.|.+.+...|.++|++.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 678888888876 77789999999999999999986543
No 109
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=35.96 E-value=58 Score=21.30 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=43.4
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHHH
Q 030714 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (173)
Q Consensus 33 LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L---gF~~yv~~Lk 109 (173)
+...-|.++++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.++
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~ef~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 84 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHKKFFALVGLKAMSAN-DVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETK 84 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTSCHH-HHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHhcC-CCCcCcHHHHHHHHccCcchHH-HHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 44566777777643 3445554221111100000000 01245566667788899999999999999 5543334455
Q ss_pred HHHHHH
Q 030714 110 AYLMRY 115 (173)
Q Consensus 110 ~~L~~y 115 (173)
..+..+
T Consensus 85 ~~~~~~ 90 (110)
T 1pva_A 85 AFLKAA 90 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 110
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.64 E-value=41 Score=26.63 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=44.9
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSE---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 33 LP~A~I~RImK~~LP~-~~rISkDA~~al~~ca~e---FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
++...+..+++..+.. +..++.++...|.+.+.- .+..+...+...|...+...|+.+|+..+++.+..+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 4555666666665432 357999998888876522 222333334444555567789999999999877653
No 111
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.30 E-value=24 Score=31.32 Aligned_cols=31 Identities=35% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 68 I~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
|..|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6777888888899999999999999999864
No 112
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=34.63 E-value=21 Score=23.96 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSE-ASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~Ltse-A~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
+.++.||...|.+. =-||.--... .-..|+..|...|+.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKNI-PFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 45788888888773 3444433333 3367888999999999998886644
No 113
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=34.36 E-value=96 Score=20.18 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4555667777889999999999999875
No 114
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=34.26 E-value=44 Score=23.83 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
.|...++..+...|+.+||+.||=
T Consensus 93 ~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 93 LCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCeecHHHHHHHHH
Confidence 366677777888999999999986
No 115
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=33.77 E-value=1.9e+02 Score=26.70 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=48.6
Q ss_pred ccCchhHHHHHHHhhCCC-----CCcccHHHHHHHHHH----------HHHHHHHHHH-----HHHHHHHhcCCCCcCch
Q 030714 31 RYLPIANISRIMKKALPA-----NGKIAKDAKDTVQEC----------VSEFISFITS-----EASDKCQKEKRKTINGD 90 (173)
Q Consensus 31 ~~LP~A~I~RImK~~LP~-----~~rISkDA~~al~~c----------a~eFI~~Lts-----eA~d~c~~~kRKTIs~e 90 (173)
-.|-..-+..+++..+.. +..++.+....|-+. -.||+.++.. .+......++.-+|+.+
T Consensus 546 G~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~~ 625 (714)
T 3bow_A 546 AEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSY 625 (714)
T ss_dssp TSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSEEHH
T ss_pred CcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeECHH
Confidence 345555566666664221 223444443333332 2456555433 34556666778899999
Q ss_pred hhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 91 DLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 91 DVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
++..+|..+|+.--.+.++..+..|
T Consensus 626 El~~~L~~~G~~ls~~~~~~l~~~~ 650 (714)
T 3bow_A 626 EMRKALEEAGFKLPCQLHQVIVARF 650 (714)
T ss_dssp HHHHHHHHTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 9999999988753334444444444
No 116
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=33.52 E-value=50 Score=23.11 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCC-cchhhHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGF-EDYIDPLKAYLM 113 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF-~~yv~~Lk~~L~ 113 (173)
+....-.++.-.|+.+++..+|..+|+ .--.+.++..+.
T Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~ 84 (135)
T 3h4s_E 45 GFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84 (135)
T ss_dssp HHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 445556677778999999999988886 322233444443
No 117
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=33.51 E-value=93 Score=21.65 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.|....-.++.-+|+.+++..+|..+|..--...++..+..+
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 456677778888999999999999999876666666655444
No 118
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=33.47 E-value=1.1e+02 Score=20.89 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (173)
.|....-.++.-.|+.+++..+|..+|..-=-+.++..+..
T Consensus 83 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 123 (143)
T 2obh_A 83 KAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDE 123 (143)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45566666777889999999999999865333455555543
No 119
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=32.87 E-value=27 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.9
Q ss_pred CcCchhhHHHHHhc-CCcchhhHH
Q 030714 86 TINGDDLLWAMATL-GFEDYIDPL 108 (173)
Q Consensus 86 TIs~eDVl~AL~~L-gF~~yv~~L 108 (173)
.-+.+||..-|+.+ ||++|++..
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F 39 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDF 39 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHH
Confidence 35789999999999 998887653
No 120
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=32.84 E-value=37 Score=23.28 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
..++.|-..-|.+ |.+..-.++.-+|+.+++..+|+.+|+.-=...++..++.+
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3466665555544 55666778888999999999999999864445555555444
No 121
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=32.53 E-value=66 Score=22.26 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
.|....-.++.-+|+.+++..+|..+|..-=.+.++..+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3556666677788999999999999986533444554444
No 122
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=32.36 E-value=60 Score=21.36 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.....++.-+|+.+++..+|..+|+.-=.+.++..+..+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344566777899999999999998754344455444433
No 123
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=32.32 E-value=1.4e+02 Score=21.60 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
.+....-.++.-+|+.+++..+|..+|+.-=.+.++..+.
T Consensus 97 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~ 136 (191)
T 1y1x_A 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMR 136 (191)
T ss_dssp HHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455566677778999999999998886432333443333
No 124
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=32.19 E-value=68 Score=20.90 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=43.6
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHHH
Q 030714 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (173)
Q Consensus 33 LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L---gF~~yv~~Lk 109 (173)
+....|.++++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.++
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKSAD-DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETK 83 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcchHH-HHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHH
Confidence 44556777777643 3455654321111100000000 11345566667778889999999999998 5543334455
Q ss_pred HHHHHH
Q 030714 110 AYLMRY 115 (173)
Q Consensus 110 ~~L~~y 115 (173)
..+..+
T Consensus 84 ~~~~~~ 89 (109)
T 1rwy_A 84 TLMAAG 89 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 125
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=32.06 E-value=84 Score=18.99 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
...-.++.-.|+.+++..+|..+|+.--...++..+.
T Consensus 14 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 14 DLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp HHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3444556667888888888888877533334444433
No 126
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=31.89 E-value=19 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 67 FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
-|..|..+|...|..+++.+|+.+||..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 355566667777777788899999999988754
No 127
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=31.60 E-value=89 Score=19.35 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=26.0
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
...-.++.-.|+.+++..+|..+|+.-=...++..+..+
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDY 59 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 444556677899999999999988754444455444433
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.52 E-value=1.3e+02 Score=23.44 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCCcCchhhHHHHHhcCCcchhhHHH
Q 030714 51 KIAKDAKDTVQECVSE----FISFITSEASDKCQKEK------------RKTINGDDLLWAMATLGFEDYIDPLK 109 (173)
Q Consensus 51 rISkDA~~al~~ca~e----FI~~LtseA~d~c~~~k------------RKTIs~eDVl~AL~~LgF~~yv~~Lk 109 (173)
.++.++...|.+.+.- -|..|..+|...+.++. ...|+.+|+..|++...-.-..+.++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 4777777777765543 33455555655555443 36799999999999876554444444
No 129
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.54 E-value=1.3e+02 Score=20.37 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHH
Q 030714 40 RIMKKALP---ANGKIAKDAKDTVQECVSEFISFIT 72 (173)
Q Consensus 40 RImK~~LP---~~~rISkDA~~al~~ca~eFI~~Lt 72 (173)
--+|+.+| .+-++|| ..+.+.|..||.+|.
T Consensus 34 ~~LR~~VP~~p~~kKLSK---iEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 34 SRLRELVPGVPRGTQLSQ---VEILQRVIDYILDLQ 66 (68)
T ss_dssp HHHHHHCCCCCTTCCCCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCccH---HHHHHHHHHHHHHHH
Confidence 33455555 4567886 777788888888875
No 130
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.18 E-value=1.2e+02 Score=21.63 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHH
Q 030714 47 PANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (173)
Q Consensus 47 P~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L 112 (173)
|...++|++-+.-|.+ |....-.++--+|+.+++..+|+.||+.--...+...+
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4455677755554443 33344456666788888888888888765444444443
No 131
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.18 E-value=40 Score=26.07 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=34.6
Q ss_pred HHHHHhhCCCCCcccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 39 SRIMKKALPANGKIAKDA-KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 39 ~RImK~~LP~~~rISkDA-~~al~~ca~eF----I~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
.+|++..+. +..++.|+ ...+.+.+.-| |..+..+|...|..+++.+|+.+|+.+|++
T Consensus 192 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 192 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 445554432 33455444 44444433322 334555677777788888999999998863
No 132
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=28.74 E-value=1.3e+02 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=9.3
Q ss_pred hcCCCCcCchhhHHHHH
Q 030714 81 KEKRKTINGDDLLWAMA 97 (173)
Q Consensus 81 ~~kRKTIs~eDVl~AL~ 97 (173)
.++..+|+.++.+.++.
T Consensus 75 ~~~~g~i~~~eF~~~~~ 91 (169)
T 3qrx_A 75 KDGSGTIDFEEFLTMMT 91 (169)
T ss_dssp SSSSSSEEHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHH
Confidence 34444566666665554
No 133
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=28.57 E-value=72 Score=21.48 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 76 ~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
....-.++.-.|+.+++..+|..+|..--.+.++..+..+
T Consensus 82 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121 (143)
T ss_dssp HTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHT
T ss_pred HHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3344456677899999999999998754444555555444
No 134
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=28.51 E-value=1.5e+02 Score=20.48 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
+....-.++.-+|+.+++..+|..+|..--.+.++..+..+
T Consensus 106 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 146 (169)
T 3qrx_A 106 AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEA 146 (169)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 34555567788999999999999998654444555555444
No 135
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=28.40 E-value=2.2e+02 Score=25.37 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=37.7
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCCcCchhhH
Q 030714 36 ANISRIMKKALPANGKIAKDAKDTVQECVSE-------------FISFITSEASDKCQKEKRKTINGDDLL 93 (173)
Q Consensus 36 A~I~RImK~~LP~~~rISkDA~~al~~ca~e-------------FI~~LtseA~d~c~~~kRKTIs~eDVl 93 (173)
..|.++.+..- ++.++.++.+.+.+.+.. ....+...|.-.|.-++|..|+++||.
T Consensus 212 e~l~~~~~~~~--~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 212 EEYERWQKEIG--EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHT--TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhcCC--cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 33444443332 467888888888777643 122244556677888999999999998
No 136
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=28.20 E-value=68 Score=24.93 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-CcCchhhHHHHHhcCC
Q 030714 50 GKIAKDAKDTVQECVSE------------FISFITSE----ASDKCQKEKRK-TINGDDLLWAMATLGF 101 (173)
Q Consensus 50 ~rISkDA~~al~~ca~e------------FI~~Ltse----A~d~c~~~kRK-TIs~eDVl~AL~~LgF 101 (173)
..|++++.+.|.+.+.. ....|-.. +.+.+..++++ +|+.+||..+++.+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46999999998887632 22222221 11222223322 5999999999987644
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=28.16 E-value=43 Score=26.92 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred hhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 35 IANISRIMKKALP-ANGKIAKDAKDTVQECVSE---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 35 ~A~I~RImK~~LP-~~~rISkDA~~al~~ca~e---FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
...+..|++..+. .+..++.++...|.+.+.- .+..+...+...|...++.+|+.+||..++..+++.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 4455555555442 1356899999888874322 233334445567777788899999999999987764
No 138
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=27.79 E-value=59 Score=26.14 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=37.2
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~I~RImK~~LP~-~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
++...+..+++..+.. +..++.++...|.+.+.--+..+.......+. ....+|+.+||..++..
T Consensus 178 l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGT 243 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCC
Confidence 4556667777655421 35789998888877654433333333322222 23456888887766543
No 139
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=27.73 E-value=1.6e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
+....-.++.-+|+.+++..+|..+|+.-=-+.++..+..|
T Consensus 390 aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 390 AFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 55666677788899999999999999865455566655555
No 140
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=27.55 E-value=21 Score=33.42 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=40.6
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC--chhhHHHHHh
Q 030714 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMAT 98 (173)
Q Consensus 43 K~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs--~eDVl~AL~~ 98 (173)
|+++.+.--|-+|.+.||++||...=.||.......-++++++++. -.+|..+|..
T Consensus 435 ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 435 KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544569999999999999999999998777666666556554 3455555553
No 141
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=26.85 E-value=1e+02 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
+|....-.++.-+|+.+++..+|..+|..-=-+.++..+.
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~ 128 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4566666778889999999999999997543444554443
No 142
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=26.82 E-value=1.8e+02 Score=26.75 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=38.2
Q ss_pred cCchhHHHHHHHhhC--CCCCcccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCCCcC
Q 030714 32 YLPIANISRIMKKAL--PANGKIAKDAKDTVQECVSEFI---------------------SFITSEASDKCQKEKRKTIN 88 (173)
Q Consensus 32 ~LP~A~I~RImK~~L--P~~~rISkDA~~al~~ca~eFI---------------------~~LtseA~d~c~~~kRKTIs 88 (173)
.++...+.+.+.-+= --...+++++.+.|.+.....= ..|-..|.-.|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355566665554331 0034788888887776543321 12333445566777777777
Q ss_pred chhhHHHHH
Q 030714 89 GDDLLWAMA 97 (173)
Q Consensus 89 ~eDVl~AL~ 97 (173)
++||..|+.
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777764
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.81 E-value=39 Score=27.01 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=40.9
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC-CCCcCchhhHHHHHhcC
Q 030714 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEK-RKTINGDDLLWAMATLG 100 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~----eFI~~LtseA~d~c~~~k-RKTIs~eDVl~AL~~Lg 100 (173)
++...+..+++..+. .+..|+.++...|.+.+. ..++.|-..+ ..+...+ +++|+.+||..++..+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 445556666665442 246799999988887643 3444443322 2333333 33899999999887544
No 144
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=26.78 E-value=80 Score=20.00 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=26.3
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
...-.++.-.|+.+++..+|..+|+.-=...++..+..+
T Consensus 27 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 27 DMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV 65 (90)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344456777899999999999998754344455444433
No 145
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.62 E-value=88 Score=28.78 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
+++..++.+|.. |.+.|.+.+...|.++|++.||=.-
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 678888888876 7778999999999999999998644
No 146
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=26.58 E-value=1.3e+02 Score=21.02 Aligned_cols=76 Identities=7% Similarity=0.034 Sum_probs=41.8
Q ss_pred CchhHHHHHHHhhCC-CCCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHH
Q 030714 33 LPIANISRIMKKALP-ANGKIAKD-AKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKA 110 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkD-A~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~ 110 (173)
++...+.++++..=. .+..|+-+ ...++... . -...+....-.++.-+|+.+++..+|..+|+.--.+.++.
T Consensus 41 ~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~-~-----~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 114 (172)
T 2znd_A 41 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-T-----DWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDI 114 (172)
T ss_dssp CCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH-H-----HHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-H-----HHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHH
Confidence 444556666665422 23456643 22222211 0 1223455556677778999999999999886543344444
Q ss_pred HHHH
Q 030714 111 YLMR 114 (173)
Q Consensus 111 ~L~~ 114 (173)
.+..
T Consensus 115 ~~~~ 118 (172)
T 2znd_A 115 LIRK 118 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 147
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=26.50 E-value=1.5e+02 Score=19.82 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHh-cCCcchhhHHHHHHHHH
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMAT-LGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~-LgF~~yv~~Lk~~L~~y 115 (173)
.+....-.++.-.|+.+++..+|.. +|..--.+.++..+..|
T Consensus 92 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 92 DAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3455566677889999999999998 78654445555555544
No 148
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=26.46 E-value=63 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CCcCchhhHHHHHhcC
Q 030714 64 VSEFISFITSEASDKCQKEKR------------------KTINGDDLLWAMATLG 100 (173)
Q Consensus 64 a~eFI~~LtseA~d~c~~~kR------------------KTIs~eDVl~AL~~Lg 100 (173)
...|..-|+-.-.++|..... -.|++|||+.|++.|.
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 368888899888899977643 2799999999998764
No 149
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.27 E-value=48 Score=26.16 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHHHhhCCCCCcccHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 38 ISRIMKKALPANGKIAKDA-KDTVQECVSE----FISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 38 I~RImK~~LP~~~rISkDA-~~al~~ca~e----FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
...|++..+. ...++.|+ ...+.+.+.- -|..+..+|...|..+++.+|+.+||..|++
T Consensus 215 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 215 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 3455554443 33455544 3444443322 2334455677777788888999999998863
No 150
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=26.14 E-value=1.3e+02 Score=21.96 Aligned_cols=34 Identities=12% Similarity=-0.112 Sum_probs=21.5
Q ss_pred HHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHH
Q 030714 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKA 110 (173)
Q Consensus 76 ~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~ 110 (173)
....-.++.-+|+.+++..+| .+|..--.+.+..
T Consensus 132 F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~ 165 (196)
T 3dtp_E 132 FNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQ 165 (196)
T ss_dssp HHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHH
Confidence 344445666788899999998 8885433333333
No 151
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=25.97 E-value=1.2e+02 Score=18.69 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030714 38 ISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77 (173)
Q Consensus 38 I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d 77 (173)
|..+|-.-.+ ...-..|...+|-+.+.+||..++.+|.+
T Consensus 6 i~~mMy~fGD-~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFGD-DQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTTS-CSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555443 45678899999999999999999998864
No 152
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=25.96 E-value=85 Score=19.83 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=13.8
Q ss_pred HhcCCCCcCchhhHHHHHhcCCc
Q 030714 80 QKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 80 ~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
-.++.-.|+.+++..+|..+|+.
T Consensus 19 D~d~~G~i~~~el~~~l~~~g~~ 41 (92)
T 2kn2_A 19 DKDQNGYISASELRHVMINLGEK 41 (92)
T ss_dssp CTTCSSEECHHHHHHHHHHTTCC
T ss_pred CCCCCCeEcHHHHHHHHHHhCCC
Confidence 34445566666666666666653
No 153
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.71 E-value=51 Score=31.01 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 51 rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
+++..++.+|.. |...|.+.+...|.++|++.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 578888888876 77788889999999999999983
No 154
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=25.67 E-value=1.1e+02 Score=20.84 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=20.7
Q ss_pred HhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 80 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 80 ~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
-.++.-+|+.+++..+|..+|+.--...+...+.
T Consensus 26 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 26 DQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp CCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred CCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445556777777777777777544444444443
No 155
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=25.24 E-value=67 Score=20.07 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
...-.++.-.|+.+++..+|..+|+.-=.+.++..+..+
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344566777899999999999999764444555555444
No 156
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.37 E-value=30 Score=31.51 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 51 KIAKDAKDTVQECVSE------------------FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 rISkDA~~al~~ca~e------------------FI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
.+++++.+.|.+.... -+..|...|...|.-.+|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 5777777777765332 12334455667788889999999999999863
No 157
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=24.00 E-value=70 Score=20.04 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=19.9
Q ss_pred HHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 78 KCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 78 ~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
..-.++.-+|+.+++..+|..+|+.
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 3445667789999999999999875
No 158
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=23.78 E-value=1.5e+02 Score=21.83 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 70 FITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 70 ~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
||+ |+-.|.-.++..|+.+||...|+..|.+
T Consensus 3 yva--AylL~~l~G~~~ptad~I~~ILkAaGve 33 (113)
T 3iz5_v 3 FIA--AYLLAYLSGNASPSAEDLTSILESVGCE 33 (113)
T ss_dssp HHH--HHHHHHHHTCCCCTTTTHHHHHHHHTCC
T ss_pred HHH--HHHHHHHcCCCCCCHHHHHHHHHHcCCC
Confidence 554 6667778888999999999999988875
No 159
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=23.76 E-value=83 Score=20.48 Aligned_cols=81 Identities=10% Similarity=0.053 Sum_probs=44.6
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC---CcchhhHHH
Q 030714 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG---FEDYIDPLK 109 (173)
Q Consensus 33 LP~A~I~RImK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~Lg---F~~yv~~Lk 109 (173)
+....|.++++..= .+..|+-+--..+......-... ...+....-.++.-+|+.+++..+|..++ ..--.+.++
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (108)
T 1rro_A 6 LSAEDIAAALQECQ-DPDTFEPQKFFQTSGLSKMSASQ-VKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETK 83 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHSGGGSCHHH-HHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHcc-CCCCcCHHHHHHHHhcCcccHHH-HHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHH
Confidence 45667888888753 45566654322211110000111 12455566667778899999999999984 433333444
Q ss_pred HHHHHH
Q 030714 110 AYLMRY 115 (173)
Q Consensus 110 ~~L~~y 115 (173)
..+..+
T Consensus 84 ~~~~~~ 89 (108)
T 1rro_A 84 SLMDAA 89 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 160
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=23.67 E-value=1.9e+02 Score=24.71 Aligned_cols=75 Identities=9% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--CchhhHHHHHhcCCcchhhHHHHHHHHHHcccccCCCC
Q 030714 49 NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTI--NGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSAR 125 (173)
Q Consensus 49 ~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTI--s~eDVl~AL~~LgF~~yv~~Lk~~L~~yre~~~~~s~k 125 (173)
.+.++.|-.+.+....+..-.++.......- - ++.-+ .-+..++-|+.+|++++++.....+++|++...+.+.|
T Consensus 423 ~~~~~~~e~~~~~~~~~~l~~~~~e~~~~~i-~-G~~d~d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~~~~~~~~ 499 (502)
T 3vlv_A 423 GVNLTVEEREIYDKYWPDVKTYMFEMGQSWV-M-GTKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGGAAKPAQV 499 (502)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TSSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-h-CCCchhhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhccCchhc
Confidence 4566665444344333333333332222221 1 23334 25667888999999999999999999998665444433
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.55 E-value=95 Score=24.11 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=37.3
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
++...+..+++..+. .+..|+.++.+.|.+.+.--+..+-......+.. ...|+.+||..++..
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~ 225 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITAT 225 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCC
Confidence 455566666665543 2467999998888776543333333322222222 346888888877654
No 162
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=23.24 E-value=49 Score=27.38 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcC-----------------------CCCcCchhhHHHHHhc
Q 030714 65 SEFISFITSEASDKCQKEK-----------------------RKTINGDDLLWAMATL 99 (173)
Q Consensus 65 ~eFI~~LtseA~d~c~~~k-----------------------RKTIs~eDVl~AL~~L 99 (173)
..|-.-|+..-.++|.... +..|++|||+.|++.|
T Consensus 70 gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L 127 (234)
T 3cuq_A 70 GDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKL 127 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHH
Confidence 4666666666666664321 1579999999999744
No 163
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=23.07 E-value=1.1e+02 Score=21.49 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 74 eA~d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 141 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGII 141 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 55666667777889999999999998864
No 164
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=23.06 E-value=1.7e+02 Score=19.43 Aligned_cols=41 Identities=20% Similarity=0.018 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
+....-.++.-.|+.+++..+|..+|..-=.+.++..+..+
T Consensus 84 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (142)
T 2bl0_C 84 AFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT 124 (142)
T ss_dssp HHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 34455556677899999999999988653334455555444
No 165
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.83 E-value=58 Score=29.82 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 52 ISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
+++.++.+|.. |...|.+.+...|.++|++.||=
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 45566666654 77788888999999999999973
No 166
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=22.72 E-value=1.9e+02 Score=19.80 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=14.4
Q ss_pred HhcCCCCcCchhhHHHHHhcCCc
Q 030714 80 QKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 80 ~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
-.++.-+|+.+++..+|..+|+.
T Consensus 37 D~~~~G~i~~~e~~~~l~~~~~~ 59 (166)
T 2aao_A 37 DADKSGQITFEELKAGLKRVGAN 59 (166)
T ss_dssp CTTCCSSBCHHHHHHHGGGGTCC
T ss_pred CCCCCCeEeHHHHHHHHHHhCCC
Confidence 34455567777777777666654
No 167
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=22.54 E-value=92 Score=20.06 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
.....++.-+|+.+++..+|..+|+.
T Consensus 34 ~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 34 AACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 44456667788899999888888853
No 168
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.04 E-value=1.3e+02 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=29.7
Q ss_pred HHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHHH
Q 030714 79 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 116 (173)
Q Consensus 79 c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~yr 116 (173)
..++++ .-+.+.++.||..++..+.++.|+..+++--
T Consensus 57 ~~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~~ 93 (122)
T 3ezq_B 57 KNTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQARD 93 (122)
T ss_dssp HHHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 344554 3588999999999999999999999887543
No 169
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.92 E-value=41 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.3
Q ss_pred CCcCchhhHHHHHhcCCc
Q 030714 85 KTINGDDLLWAMATLGFE 102 (173)
Q Consensus 85 KTIs~eDVl~AL~~LgF~ 102 (173)
..++.++|..+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 457788999999999986
No 170
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.65 E-value=1.4e+02 Score=20.70 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=8.9
Q ss_pred CCCCcCchhhHHHHHhcCC
Q 030714 83 KRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 83 kRKTIs~eDVl~AL~~LgF 101 (173)
+--+|+.+++..+|..+|+
T Consensus 38 ~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 38 ADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred CCCcCCHHHHHHHHHHhCC
Confidence 3334555555555544444
No 171
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=21.61 E-value=97 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=17.0
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcC
Q 030714 77 DKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 77 d~c~~~kRKTIs~eDVl~AL~~Lg 100 (173)
...-.++.-.|+.+++..+|..+|
T Consensus 18 ~~~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 18 KRFDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HHHCTTCSSEEEHHHHHHHHHTTT
T ss_pred HHHCCCCCCCcCHHHHHHHHHHcC
Confidence 344455666788888888888877
No 172
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=37 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=12.9
Q ss_pred cCchhhHHHHHhcCCcc
Q 030714 87 INGDDLLWAMATLGFED 103 (173)
Q Consensus 87 Is~eDVl~AL~~LgF~~ 103 (173)
=+.+||..-|+.+||++
T Consensus 30 Ws~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEE 46 (103)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCCh
Confidence 45678888888888876
No 173
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=21.45 E-value=1.9e+02 Score=19.23 Aligned_cols=28 Identities=32% Similarity=0.365 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~ 102 (173)
+....-.++.-+|+.+++..+|..+|..
T Consensus 90 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 117 (149)
T 2mys_C 90 GLRVFDKEGNGTVMGAELRHVLATLGEK 117 (149)
T ss_pred HHHHhCCCCCceEcHHHHHHHHHHhCCC
Confidence 3444555667789999999999988864
No 174
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=21.24 E-value=94 Score=22.79 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 75 A~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
+....-.++.-+|+.+++..+|..+|+.-- ..++..+.
T Consensus 57 ~F~~~D~d~~G~i~~~El~~~l~~~g~~~~-~~~~~l~~ 94 (191)
T 3k21_A 57 TFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDLLLD 94 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCC-TTHHHHHH
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCCCcH-HHHHHHHH
Confidence 334455667778999999999998887532 44444333
No 175
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.17 E-value=1.4e+02 Score=26.89 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=34.3
Q ss_pred hCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030714 45 ALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 45 ~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
+.|..-++++|=+..|.+ |.+..-.++.-+|+.+++..+|+.||+.-=...++..+.
T Consensus 289 wePs~E~Lt~EEI~ELRE------------aF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 289 WEPTRDQLTEEQIAEFKE------------AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp ECCBCBCCCHHHHHHHHH------------HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hHhhHhhhhHHHHHHHHH------------HHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345455677765555554 334445666777888888888888777533344444443
No 176
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.01 E-value=1.7e+02 Score=25.26 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=38.5
Q ss_pred CchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030714 33 LPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 33 LP~A~I~RImK~~LP~------~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~L 99 (173)
+-...|.+.+.+.+.. ...+|..++.+|.. |...+..-+...|..+||+.||=.-
T Consensus 55 vd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 55 LGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp CCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 3344555555555532 24578888888776 6667778889999999999998543
No 177
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=20.44 E-value=1.6e+02 Score=20.73 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=28.1
Q ss_pred cCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHHH
Q 030714 82 EKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 116 (173)
Q Consensus 82 ~kRKTIs~eDVl~AL~~LgF~~yv~~Lk~~L~~yr 116 (173)
.--|||.+.||-.||..-++-.+.+++......-.
T Consensus 20 ~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La 54 (85)
T 2ns0_A 20 ADSASICPSDVARAVAPDDWRPLMEPVREAAGRLA 54 (85)
T ss_dssp CTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHH
Confidence 34599999999999988788888888887665444
No 178
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.44 E-value=1.6e+02 Score=26.81 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=27.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030714 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 50 ~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~~ 98 (173)
..+|..++.+|++ |...+...+...|+.+||+.||=.
T Consensus 78 ~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhc
Confidence 3467777777766 556666678889999999999854
No 179
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=20.37 E-value=2.8e+02 Score=20.83 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHH-HHHhcCCcchhhHHHHHHH
Q 030714 42 MKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLW-AMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 42 mK~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~-AL~~LgF~~yv~~Lk~~L~ 113 (173)
++..++ ..++.+-+..|.+ .| ...-.++.-+|+.+++.. .++.+|+..-...++..+.
T Consensus 37 l~~~l~--~~ls~~~~~~l~~---~F---------~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~ 95 (226)
T 2lvv_A 37 IRCAIP--RDKDAESKSRRIE---LF---------KQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQ 95 (226)
T ss_dssp HHHHSC--SSCCHHHHHHHHH---HH---------HHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHH
T ss_pred HHHHhc--hhCCHHHHHHHHH---HH---------HHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344465 2467665554444 33 333455667788888887 4455666433333333333
No 180
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=20.16 E-value=91 Score=25.26 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=35.6
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030714 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 32 ~LP~A~I~RImK~~LP-~~~rISkDA~~al~~ca~eFI~~LtseA~d~c~~~kRKTIs~eDVl~AL~ 97 (173)
.++...+.+.+++.+. .+..|+.+|...|.+.+.-=+..+..+-...+.-.+.++|+.+||...+.
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 3455556655555442 25689999999888765432222222222222212344688777765544
No 181
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=20.12 E-value=51 Score=29.45 Aligned_cols=36 Identities=14% Similarity=0.384 Sum_probs=27.5
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030714 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDK 78 (173)
Q Consensus 43 K~~LP~~~rISkDA~~al~~ca~eFI~~LtseA~d~ 78 (173)
|+++.+.--|-+|.+.+|++||...=.||.......
T Consensus 428 k~~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~ 463 (471)
T 1mu5_A 428 KESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKEQ 463 (471)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444456889999999999999999998755533
No 182
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=20.06 E-value=2.1e+02 Score=19.23 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=47.1
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHH------HHHHHHHHHH------------HHHHHHHhcCCCCcCchhh
Q 030714 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQEC------VSEFISFITS------------EASDKCQKEKRKTINGDDL 92 (173)
Q Consensus 31 ~~LP~A~I~RImK~~LP~~~rISkDA~~al~~c------a~eFI~~Lts------------eA~d~c~~~kRKTIs~eDV 92 (173)
-.|...-+.++++... ..++++....+-+. -.+|+.++.. .+....-.++.-+|+.+++
T Consensus 30 G~i~~~el~~~l~~~g---~~~~~~~~~~l~~~~d~~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el 106 (146)
T 2qac_A 30 GKISIDNASYNARKLG---LAPSSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQM 106 (146)
T ss_dssp TBEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHCSEECHHHHHHHHHHTCCTTCCHHHHHHHHHTTCTTCSSEEEHHHH
T ss_pred CcccHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 3455666666666542 23444333333222 2466665542 2334444566678999999
Q ss_pred HHHHHhcCCcchhhHHHHHHHHH
Q 030714 93 LWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 93 l~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
..+|..+|..-=.+.++..+..+
T Consensus 107 ~~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 107 KNILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc
Confidence 99999988643334555566555
Done!