Query 030715
Match_columns 173
No_of_seqs 108 out of 227
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05620 DUF788: Protein of un 100.0 2.9E-60 6.2E-65 377.0 19.6 164 1-164 1-170 (170)
2 KOG3269 Predicted membrane pro 100.0 5.2E-50 1.1E-54 315.5 17.4 173 1-173 1-180 (180)
3 KOG3269 Predicted membrane pro 97.8 0.0016 3.5E-08 52.2 14.6 103 2-106 10-120 (180)
4 PF05620 DUF788: Protein of un 92.3 4.7 0.0001 31.9 14.3 25 111-135 109-133 (170)
5 PF11808 DUF3329: Domain of un 90.5 1.8 3.8E-05 30.8 7.0 43 98-140 12-57 (90)
6 COG1755 Uncharacterized protei 85.3 9 0.0002 30.7 8.6 116 4-130 32-155 (172)
7 PF14949 ARF7EP_C: ARF7 effect 62.7 3.7 8.1E-05 30.3 0.9 20 67-86 43-62 (103)
8 PF06936 Selenoprotein_S: Sele 60.6 0.78 1.7E-05 37.3 -3.2 34 101-136 22-56 (190)
9 PF04191 PEMT: Phospholipid me 59.7 57 0.0012 22.7 8.6 46 83-128 39-86 (106)
10 PF15086 UPF0542: Uncharacteri 59.3 9.6 0.00021 26.4 2.4 12 121-132 35-46 (74)
11 PF10990 DUF2809: Protein of u 54.1 62 0.0013 23.1 6.1 49 17-65 10-58 (91)
12 PRK00247 putative inner membra 43.3 1.7E+02 0.0037 26.8 8.5 18 55-72 112-130 (429)
13 PF14038 YqzE: YqzE-like prote 42.7 14 0.00031 24.1 1.1 14 153-166 24-37 (54)
14 PRK10697 DNA-binding transcrip 41.4 75 0.0016 23.9 5.0 43 89-138 23-66 (118)
15 PF15012 DUF4519: Domain of un 40.0 29 0.00063 22.9 2.3 35 4-38 14-48 (56)
16 PF05101 VirB3: Type IV secret 39.4 82 0.0018 21.6 4.8 28 105-132 34-61 (89)
17 PF03563 Bunya_G2: Bunyavirus 38.3 56 0.0012 28.2 4.3 36 98-133 189-228 (285)
18 TIGR00934 2a38euk potassium up 38.0 3.2E+02 0.007 27.1 9.9 20 81-100 505-524 (800)
19 PF14340 DUF4395: Domain of un 37.9 1.5E+02 0.0032 22.4 6.3 28 104-131 15-42 (131)
20 PF06281 DUF1035: Protein of u 36.1 16 0.00035 25.0 0.7 16 117-132 56-71 (73)
21 cd04857 Peptidases_S8_Tripepti 33.8 23 0.00049 32.1 1.4 28 62-91 11-41 (412)
22 PF14293 YWFCY: YWFCY protein 32.3 91 0.002 20.9 3.7 17 15-31 11-27 (61)
23 KOG4812 Golgi-associated prote 32.3 50 0.0011 28.1 3.1 11 46-56 173-183 (262)
24 PRK13899 type IV secretion sys 32.2 1.5E+02 0.0032 21.3 5.2 26 101-126 31-57 (97)
25 PF06697 DUF1191: Protein of u 32.1 32 0.0007 29.7 2.0 17 150-166 240-256 (278)
26 PF04890 DUF648: Family of unk 31.9 72 0.0016 28.2 4.1 28 13-40 58-85 (328)
27 TIGR00783 ccs citrate carrier 31.8 3.5E+02 0.0075 24.1 8.4 28 56-83 131-160 (347)
28 PHA02513 V1 structural protein 29.8 65 0.0014 24.3 3.0 15 118-132 120-134 (135)
29 COG1983 PspC Putative stress-r 29.4 1.4E+02 0.003 20.5 4.4 42 89-136 19-61 (70)
30 PF08250 Sperm_act_pep: Sperm- 27.2 33 0.00072 14.9 0.6 9 83-91 1-9 (10)
31 PF06772 LtrA: Bacterial low t 25.9 2.4E+02 0.0051 24.3 6.4 46 91-136 6-58 (354)
32 KOG1114 Tripeptidyl peptidase 24.6 55 0.0012 33.2 2.3 42 61-104 68-118 (1304)
33 KOG2719 Metalloprotease [Gener 24.2 2.6E+02 0.0056 25.7 6.4 16 134-149 204-219 (428)
34 PF05297 Herpes_LMP1: Herpesvi 23.4 27 0.00058 30.7 0.0 9 33-41 67-75 (381)
35 KOG4055 Uncharacterized conser 21.8 40 0.00087 27.6 0.7 19 146-164 122-140 (213)
36 COG4291 Predicted membrane pro 21.7 2.2E+02 0.0048 23.7 5.0 28 77-105 154-181 (228)
37 PHA00739 V3 structural protein 21.4 36 0.00079 24.3 0.3 15 118-132 76-90 (92)
38 PRK13854 type IV secretion sys 21.2 3.3E+02 0.0072 20.1 5.4 24 109-132 39-62 (108)
39 COG3702 VirB3 Type IV secretor 20.4 2.8E+02 0.0061 20.5 4.9 27 107-133 37-63 (105)
40 COG1280 RhtB Putative threonin 20.1 3.4E+02 0.0073 21.7 5.8 42 93-134 46-91 (208)
No 1
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.9e-60 Score=377.03 Aligned_cols=164 Identities=38% Similarity=0.727 Sum_probs=152.7
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCcc
Q 030715 1 MANQGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELI 80 (173)
Q Consensus 1 MA~ks~Kk~a~~N~~~l~~l~~~~~~~~~l~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~~~G~Lv 80 (173)
|||+|+||++++|++++++++++++++|++|+++|+++++++.++++++.|+++++|+++||++|++++||+||++|+|+
T Consensus 1 MA~ks~Kk~a~~N~~~l~~l~~~~~~~~~l~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~g~Lv 80 (170)
T PF05620_consen 1 MANKSAKKIAEENKATLKFLRLISLAVNILYLLLRLLFRYSSPSFWSWFGYLLFSLPAIFCYYFLEKMARPKYDETGELV 80 (170)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCchHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCee
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred cccccCCCCc-cchhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hccCCCCCCCC-Cc-chHhHHH
Q 030715 81 DGGFDMSTGG-ICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGFI---KGFLPQGSEGD-TE-DEKTRKK 154 (173)
Q Consensus 81 ~~G~DL~~~G-l~ey~~Diiylt~~v~~~sl~s~~~W~l~L~IP~y~~Ykl~~~i---~p~~~~~~~~~-~~-~~~~sKr 154 (173)
|+|+|||++| ++||+||+||+||+||+++++|+||||+||+||+|++||+|+++ .||+..+++++ ++ ++++|||
T Consensus 81 ~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l~LvIP~ya~Ykl~~~i~~~~~~~~~~~~~~~~~~~~~~sKr 160 (170)
T PF05620_consen 81 DAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWLYLVIPGYAIYKLWGLIKKLGPWFSQPPPQQAEPEEEAKSKR 160 (170)
T ss_pred cCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccccccccccHH
Confidence 9999999866 99999999999999999999999999999999999999999987 46775444433 22 2889999
Q ss_pred HHHHHHhhcc
Q 030715 155 REKMEKKTSR 164 (173)
Q Consensus 155 q~K~Ekr~~k 164 (173)
|+|||||++|
T Consensus 161 q~K~err~~K 170 (170)
T PF05620_consen 161 QEKMERRANK 170 (170)
T ss_pred HHHHHHhccC
Confidence 9999999886
No 2
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5.2e-50 Score=315.53 Aligned_cols=173 Identities=47% Similarity=0.873 Sum_probs=155.3
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Q 030715 1 MANQGAKKRKEENARHMEKLRRLIIACNV------IYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYT 74 (173)
Q Consensus 1 MA~ks~Kk~a~~N~~~l~~l~~~~~~~~~------l~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y~ 74 (173)
|||+++||++.+|++.+-.+...++.++. +|+.++.++++++.|+++|+++++++++++++|++|..|++|+||
T Consensus 1 MA~q~~~Kqat~naK~I~een~~t~~fy~~~~~~~~~~~v~~~f~~s~~T~~~wi~lv~s~l~~g~~y~~m~~mAkpkyd 80 (180)
T KOG3269|consen 1 MANQAKKKQATKNAKHIAEENKITLLFYLNMGANAVYFAVLRLFFYSSVTKTSWIGLVFSSLVYGFAYYFMHSMAKPKYD 80 (180)
T ss_pred CCCcccchhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccCCcC
Confidence 88888777777776655555555554444 777788888888899999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCc-cchhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCcchHhHH
Q 030715 75 DDGELIDGGFDMSTGG-ICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGFIKGFLPQGSEGDTEDEKTRK 153 (173)
Q Consensus 75 ~~G~Lv~~G~DL~~~G-l~ey~~Diiylt~~v~~~sl~s~~~W~l~L~IP~y~~Ykl~~~i~p~~~~~~~~~~~~~~~sK 153 (173)
++|+|+|+|.|||++| ++||++|+||+|+++|++++++.||||+||++|+|++||+|+++.||+...+++.++||+.+|
T Consensus 81 d~G~Lld~G~Dln~~g~~~sy~~D~iylt~~v~llsiis~kfw~~lLl~P~~a~yk~~g~i~p~ls~g~~~~dn~e~~~k 160 (180)
T KOG3269|consen 81 DDGALLDGGFDLNDEGAICSYVKDAIYLTCFVQLLSIISGKFWASLLLIPIFAGYKAAGLILPMLSQGSEQGDNDEKNRK 160 (180)
T ss_pred CCCceeecCcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcchhccccccccchhhcch
Confidence 9999999999999877 999999999999999999999999999999999999999999999999887777778889999
Q ss_pred HHHHHHHhhccCCccccccC
Q 030715 154 KREKMEKKTSRGKFVKTRTR 173 (173)
Q Consensus 154 rq~K~Ekr~~k~~~~~~~~~ 173 (173)
+|+|||||++|++.+++|.|
T Consensus 161 kq~K~~R~~~r~~~~~t~s~ 180 (180)
T KOG3269|consen 161 KQKKMDRQMSRGQVVKTRSR 180 (180)
T ss_pred hHHHHHHHHHccccccCCCC
Confidence 99999999999999999876
No 3
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=97.81 E-value=0.0016 Score=52.16 Aligned_cols=103 Identities=14% Similarity=-0.042 Sum_probs=60.1
Q ss_pred CchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCc----ccCCC
Q 030715 2 ANQGAKKRKEENARHMEKLRRLII-ACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKP----TYTDD 76 (173)
Q Consensus 2 A~ks~Kk~a~~N~~~l~~l~~~~~-~~~~l~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP----~y~~~ 76 (173)
|++++|.|+++|.+++.++.++.+ ++-.....+-+...-....|..+..-.+.....+-.+..|.+-.=- ..|.-
T Consensus 10 at~naK~I~een~~t~~fy~~~~~~~~~~~v~~~f~~s~~T~~~wi~lv~s~l~~g~~y~~m~~mAkpkydd~G~Lld~G 89 (180)
T KOG3269|consen 10 ATKNAKHIAEENKITLLFYLNMGANAVYFAVLRLFFYSSVTKTSWIGLVFSSLVYGFAYYFMHSMAKPKYDDDGALLDGG 89 (180)
T ss_pred cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCceeecC
Confidence 678999999999999999984332 2222223333445555567777755555555333345667554322 33332
Q ss_pred CCccccc---ccCCCCccchhhhHHHHHHHHHH
Q 030715 77 GELIDGG---FDMSTGGICGYLHDVIYITSFVQ 106 (173)
Q Consensus 77 G~Lv~~G---~DL~~~Gl~ey~~Diiylt~~v~ 106 (173)
-.|-++| +|+ .-++=...|+++++.+.+
T Consensus 90 ~Dln~~g~~~sy~--~D~iylt~~v~llsiis~ 120 (180)
T KOG3269|consen 90 FDLNDEGAICSYV--KDAIYLTCFVQLLSIISG 120 (180)
T ss_pred cCCCCCccHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 2666776 233 223455567888777764
No 4
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=92.31 E-value=4.7 Score=31.87 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 030715 111 LSEKFWYTYLVIPAFGAYQSFGFIK 135 (173)
Q Consensus 111 ~s~~~W~l~L~IP~y~~Ykl~~~i~ 135 (173)
.+--.=+.|++--+.=+|-+|....
T Consensus 109 l~~~s~~~w~l~LvIP~ya~Ykl~~ 133 (170)
T PF05620_consen 109 LSIISNKFWWLYLVIPGYAIYKLWG 133 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345455555555555666665444
No 5
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=90.51 E-value=1.8 Score=30.80 Aligned_cols=43 Identities=9% Similarity=0.325 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhh--hhccCCC
Q 030715 98 VIYITSFVQVMSILSEKFWY-TYLVIPAFGAYQSFGF--IKGFLPQ 140 (173)
Q Consensus 98 iiylt~~v~~~sl~s~~~W~-l~L~IP~y~~Ykl~~~--i~p~~~~ 140 (173)
++.+..++-++..+.+.+|+ +.+..-+|.+|.++.. +.-|+..
T Consensus 12 l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~wh~~~l~rL~~WL~~ 57 (90)
T PF11808_consen 12 LLLLLLAAALVGWLFGHLWWALLLGLLLYLFWHLYQLYRLERWLRN 57 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444555555555555554 4455566677777665 5668743
No 6
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.29 E-value=9 Score=30.67 Aligned_cols=116 Identities=17% Similarity=0.304 Sum_probs=67.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCccc-----CCCCC
Q 030715 4 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTY-----TDDGE 78 (173)
Q Consensus 4 ks~Kk~a~~N~~~l~~l~~~~~~~~~l~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~rP~y-----~~~G~ 78 (173)
||+|+--++|.+.+..+|.....+.+ +-.+....++.|..++++++.-+.+..-|..+...|+==- -++++
T Consensus 32 ~Ga~E~G~~n~~~l~ilH~~~yls~i----vE~~~~~~~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~ 107 (172)
T COG1755 32 KGAKEYGKTNYKLLVILHTAFYLSCI----VEAWLNNTFFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQ 107 (172)
T ss_pred CcchhhCccccchHHHHHHHHHHHHH----HHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCce
Confidence 56666667788888777776655432 2233445555666677777777777777777877774211 13455
Q ss_pred cccccccCCCCccchhhhHHHHHH-HHHHHHH-HhhhHHHHHH-HHHHHHHHHHH
Q 030715 79 LIDGGFDMSTGGICGYLHDVIYIT-SFVQVMS-ILSEKFWYTY-LVIPAFGAYQS 130 (173)
Q Consensus 79 Lv~~G~DL~~~Gl~ey~~Diiylt-~~v~~~s-l~s~~~W~l~-L~IP~y~~Ykl 130 (173)
++++| +..++.-==|.- .+.++.. .....+|+.- +..|+|+.-..
T Consensus 108 ~v~sg-------lfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~p~ya~~L~ 155 (172)
T COG1755 108 IVRSG-------LFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFSPIYALLLY 155 (172)
T ss_pred eeccc-------cchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555 444444433333 4445333 4456778844 67787765543
No 7
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=62.66 E-value=3.7 Score=30.28 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.5
Q ss_pred hhcCcccCCCCCcccccccC
Q 030715 67 AMAKPTYTDDGELIDGGFDM 86 (173)
Q Consensus 67 ~~~rP~y~~~G~Lv~~G~DL 86 (173)
.-..+.||++|.|+..|.||
T Consensus 43 ~~~~~~YD~~G~l~~~~~Dl 62 (103)
T PF14949_consen 43 KKKSKHYDEKGRLISNGKDL 62 (103)
T ss_pred ccccccccCCceEeeCCCcc
Confidence 44568999999999999998
No 8
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=60.65 E-value=0.78 Score=37.34 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=0.4
Q ss_pred HHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 030715 101 ITSFVQ-VMSILSEKFWYTYLVIPAFGAYQSFGFIKG 136 (173)
Q Consensus 101 lt~~v~-~~sl~s~~~W~l~L~IP~y~~Ykl~~~i~p 136 (173)
++.+.. +..++++|.||+.++ +.++|.+|..+.+
T Consensus 22 ~~~l~~tv~~~L~~yGWyil~~--~I~ly~l~qkl~~ 56 (190)
T PF06936_consen 22 LSFLQSTVGSFLSSYGWYILFG--CILLYLLWQKLSP 56 (190)
T ss_dssp ------------------------------------H
T ss_pred HHHHHHHHHHHHHHhCHHHHHH--HHHHHHHHHHHHH
Confidence 344433 556889999997743 3344555555444
No 9
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=59.67 E-value=57 Score=22.73 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=28.9
Q ss_pred cccCCCCccchhhhHHHHHHHHHHHHH-Hhh-hHHHHHHHHHHHHHHH
Q 030715 83 GFDMSTGGICGYLHDVIYITSFVQVMS-ILS-EKFWYTYLVIPAFGAY 128 (173)
Q Consensus 83 G~DL~~~Gl~ey~~Diiylt~~v~~~s-l~s-~~~W~l~L~IP~y~~Y 128 (173)
...|-++|...+.=.=+|+..+...++ .+. +..|.+.+.++....+
T Consensus 39 ~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~~ 86 (106)
T PF04191_consen 39 PQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLLY 86 (106)
T ss_pred CCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 334667889999999999998876444 333 3444344444444444
No 10
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=59.31 E-value=9.6 Score=26.43 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHh
Q 030715 121 VIPAFGAYQSFG 132 (173)
Q Consensus 121 ~IP~y~~Ykl~~ 132 (173)
+|-++..|++-+
T Consensus 35 iisa~lSwkLaK 46 (74)
T PF15086_consen 35 IISAVLSWKLAK 46 (74)
T ss_pred HHHHHHHHHHHH
Confidence 444555565554
No 11
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=54.05 E-value=62 Score=23.05 Aligned_cols=49 Identities=8% Similarity=0.082 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 030715 17 MEKLRRLIIACNVIYFVVRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQL 65 (173)
Q Consensus 17 l~~l~~~~~~~~~l~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l 65 (173)
++.+---++.+..+|.++++++.+.+........+.++.++++..++..
T Consensus 10 ir~y~GDvL~~~~vy~~~~~~~p~~~~~~~~~~~l~~~~~IE~~Ql~~~ 58 (91)
T PF10990_consen 10 IRPYLGDVLYVVLVYCLVRFFFPRKSPKRLAIAALLFAFAIEFLQLYHA 58 (91)
T ss_pred HhhcccHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444566678899999998875545556677888888888877654
No 12
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=43.31 E-value=1.7e+02 Score=26.78 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=10.6
Q ss_pred HHHHHH-HHHHHHhhcCcc
Q 030715 55 SVAYAI-PYQQLSAMAKPT 72 (173)
Q Consensus 55 ~~~~~~-~~~~l~~~~rP~ 72 (173)
.+|.++ .|+.+.+|++|.
T Consensus 112 QiPIfigLy~vir~ma~~~ 130 (429)
T PRK00247 112 QIPVFLGLYQVLLRMARPE 130 (429)
T ss_pred HHHHHHHHHHHHHhccccC
Confidence 444444 455678887654
No 13
>PF14038 YqzE: YqzE-like protein
Probab=42.69 E-value=14 Score=24.11 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=9.6
Q ss_pred HHHHHHHHhhccCC
Q 030715 153 KKREKMEKKTSRGK 166 (173)
Q Consensus 153 Krq~K~Ekr~~k~~ 166 (173)
+|++|++||+.|..
T Consensus 24 Rk~~k~~rK~~k~p 37 (54)
T PF14038_consen 24 RKERKEERKEEKEP 37 (54)
T ss_pred HHHHHHHHHhcCCc
Confidence 56667777777754
No 14
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=41.37 E-value=75 Score=23.93 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=21.8
Q ss_pred Cccchhh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhccC
Q 030715 89 GGICGYL-HDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGFIKGFL 138 (173)
Q Consensus 89 ~Gl~ey~-~Diiylt~~v~~~sl~s~~~W~l~L~IP~y~~Ykl~~~i~p~~ 138 (173)
+|+.+|. .|+.++=.+.-++.+++ +..|+.++|-+-.++.|--
T Consensus 23 aGiA~y~gi~~~~VRl~~vl~~~~~-------~~~~~~~~Yi~l~~~lp~~ 66 (118)
T PRK10697 23 AGIAHYFDVPVKLVRIIVVLSIFFG-------LFVFTLVAYIILSFALDPM 66 (118)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHh-------hchHHHHHHHHHHHhccCC
Confidence 5677775 56666666543333322 1234445565555555443
No 15
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=40.03 E-value=29 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=24.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030715 4 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMII 38 (173)
Q Consensus 4 ks~Kk~a~~N~~~l~~l~~~~~~~~~l~~l~~~~~ 38 (173)
+.-|.+.++|.++-+.+..+.+++.+.++++..+|
T Consensus 14 K~K~ERk~~~~e~~~kv~tVVlP~l~~~~~~Ivv~ 48 (56)
T PF15012_consen 14 KQKKERKKEMQEAQQKVFTVVLPTLAAVFLFIVVF 48 (56)
T ss_pred HHHHHHHHHHHHHHHhheeEehhHHHHHHHHHhhe
Confidence 34566788899999999888887766655544443
No 16
>PF05101 VirB3: Type IV secretory pathway, VirB3-like protein; InterPro: IPR007792 This entry represents type IV secretion system proteins VirB3, TrbD and AvhB. Type IV secretion systems are found in plant and animal pathogens, as well as in symbiotic bacteria. The tumour-inducing (Ti) plasmid of Rhizobium radiobacter (Agrobacterium tumefaciens) encodes two DNA transfer systems: VirB and Trb, where the virB operon is required for the transfer DNA to the plant host, and the trb system is required for the conjugal transfer of the Ti plasmid between cells of Agrobacterium [, ]. In addition, VirB3 is found associated with bacterial inner and outer membranes and assists T pilus formation as an assembly factor []. The conjugal transfer protein TrbD contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins []. This entry also includes avhB (Agrobacterium virulence homologue virB), which is most similar to the VirB type IV secretion system of Bartonella henselae (Rochalimaea henselae) [].
Probab=39.44 E-value=82 Score=21.56 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 030715 105 VQVMSILSEKFWYTYLVIPAFGAYQSFG 132 (173)
Q Consensus 105 v~~~sl~s~~~W~l~L~IP~y~~Ykl~~ 132 (173)
+-++.+.+..+|++.+.+|++.+-.+-.
T Consensus 34 ~~~l~~~~~~~~~~li~~~~~~~~~~~~ 61 (89)
T PF05101_consen 34 AFLLFLIIRSLWYLLIFIILHFIARLTC 61 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888888888877664433
No 17
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=38.25 E-value=56 Score=28.18 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=23.1
Q ss_pred HHHHHHHH---HHHHHhhhHHHHHHHHHHHHH-HHHHHhh
Q 030715 98 VIYITSFV---QVMSILSEKFWYTYLVIPAFG-AYQSFGF 133 (173)
Q Consensus 98 iiylt~~v---~~~sl~s~~~W~l~L~IP~y~-~Ykl~~~ 133 (173)
+|+++.++ -++.++-.+-+..||++|+|. +-++|+.
T Consensus 189 lIil~~~~~~~~i~~~IltktYi~YlliPiF~P~~~~Yg~ 228 (285)
T PF03563_consen 189 LIILTCLTLIIFIFLIILTKTYICYLLIPIFYPIAYLYGW 228 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 344555678899999999986 3344554
No 18
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=37.96 E-value=3.2e+02 Score=27.13 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=15.7
Q ss_pred cccccCCCCccchhhhHHHH
Q 030715 81 DGGFDMSTGGICGYLHDVIY 100 (173)
Q Consensus 81 ~~G~DL~~~Gl~ey~~Diiy 100 (173)
++|.||-..+|..|-.|...
T Consensus 505 NAGFsL~~dSM~~F~~~~~v 524 (800)
T TIGR00934 505 NLGLTLTPESMVSFNKNSYL 524 (800)
T ss_pred cCCCCcCCCcchhhccCccH
Confidence 57999987899988887433
No 19
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=37.85 E-value=1.5e+02 Score=22.39 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=18.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 030715 104 FVQVMSILSEKFWYTYLVIPAFGAYQSF 131 (173)
Q Consensus 104 ~v~~~sl~s~~~W~l~L~IP~y~~Ykl~ 131 (173)
.+-++++++...|.++++...++.=-+.
T Consensus 15 ~~~~~~l~~~~~~ll~~l~~~f~~~~~~ 42 (131)
T PF14340_consen 15 LLLALALVTGQPWLLAILAVDFALRAFF 42 (131)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3445567777888888887777754444
No 20
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=36.06 E-value=16 Score=24.98 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 030715 117 YTYLVIPAFGAYQSFG 132 (173)
Q Consensus 117 ~l~L~IP~y~~Ykl~~ 132 (173)
+..+++|+..+||+++
T Consensus 56 LvlIiVPAvi~Yk~yk 71 (73)
T PF06281_consen 56 LVLIIVPAVIAYKIYK 71 (73)
T ss_pred HHHHHhhhheeeeeee
Confidence 3456899999999875
No 21
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=33.77 E-value=23 Score=32.13 Aligned_cols=28 Identities=29% Similarity=0.610 Sum_probs=22.3
Q ss_pred HHHHHhhcCcccCCCC---CcccccccCCCCcc
Q 030715 62 YQQLSAMAKPTYTDDG---ELIDGGFDMSTGGI 91 (173)
Q Consensus 62 ~~~l~~~~rP~y~~~G---~Lv~~G~DL~~~Gl 91 (173)
..++++. |.||..| .++|.|.|+.+.||
T Consensus 11 ~~f~~~~--p~~dgr~v~iai~dtgvd~~~~~l 41 (412)
T cd04857 11 LRFLQKY--PEYDGRGVLIAILDTGVDPGAPGL 41 (412)
T ss_pred HHHHHHC--cCCCCCCcEEEEecCCCCCCCCcc
Confidence 3445544 9999988 68899999998887
No 22
>PF14293 YWFCY: YWFCY protein
Probab=32.33 E-value=91 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030715 15 RHMEKLRRLIIACNVIY 31 (173)
Q Consensus 15 ~~l~~l~~~~~~~~~l~ 31 (173)
+++.+.+.+++.+.+++
T Consensus 11 KImdf~R~iSI~~l~ih 27 (61)
T PF14293_consen 11 KIMDFMRAISILFLVIH 27 (61)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555444443
No 23
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=32.29 E-value=50 Score=28.12 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q 030715 46 KHWVGLVLTSV 56 (173)
Q Consensus 46 ~~~~~~~~~~~ 56 (173)
+.|++|.++.+
T Consensus 173 FnwIGFlltyc 183 (262)
T KOG4812|consen 173 FNWIGFLLTYC 183 (262)
T ss_pred HHHHHHHHHHH
Confidence 46777766554
No 24
>PRK13899 type IV secretion system protein VirB3; Provisional
Probab=32.21 E-value=1.5e+02 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH-HHH
Q 030715 101 ITSFVQVMSILSEKFWYTYLVIP-AFG 126 (173)
Q Consensus 101 lt~~v~~~sl~s~~~W~l~L~IP-~y~ 126 (173)
...++-++.+.++.+|++.+.+| .++
T Consensus 31 ~~~~~~l~~i~~~~~~~lll~~p~~~~ 57 (97)
T PRK13899 31 NMIISMMVFIWTNDFRILFIAAPGIHG 57 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777888777775 666
No 25
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=32.09 E-value=32 Score=29.67 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHhhccCC
Q 030715 150 KTRKKREKMEKKTSRGK 166 (173)
Q Consensus 150 ~~sKrq~K~Ekr~~k~~ 166 (173)
++.||+++|||+++.+.
T Consensus 240 krk~k~~eMEr~A~~gE 256 (278)
T PF06697_consen 240 KRKKKIEEMERRAEEGE 256 (278)
T ss_pred hHHHHHHHHHHhhccCc
Confidence 56688999999997754
No 26
>PF04890 DUF648: Family of unknown function (DUF648) ; InterPro: IPR006974 This is a family of hypothetical proteins from Chlamydia pneumoniae.
Probab=31.89 E-value=72 Score=28.19 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030715 13 NARHMEKLRRLIIACNVIYFVVRMIIFH 40 (173)
Q Consensus 13 N~~~l~~l~~~~~~~~~l~~l~~~~~~~ 40 (173)
=+++|+.+..+.+++.++.+++|+++|.
T Consensus 58 ~eKILKILSyll~PivLIAL~lR~lLH~ 85 (328)
T PF04890_consen 58 IEKILKILSYLLFPIVLIALLLRYLLHR 85 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999975
No 27
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=31.81 E-value=3.5e+02 Score=24.13 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhc--CcccCCCCCccccc
Q 030715 56 VAYAIPYQQLSAMA--KPTYTDDGELIDGG 83 (173)
Q Consensus 56 ~~~~~~~~~l~~~~--rP~y~~~G~Lv~~G 83 (173)
+.++++-..+.+.+ +|+++.+|+|++.+
T Consensus 131 i~AIi~agll~~lG~~~p~ltG~G~L~~~~ 160 (347)
T TIGR00783 131 IFAIICAGLLSRIGKKRPKLNGHGELVRSE 160 (347)
T ss_pred HHHHHHHHHHHHHhccCCCcCCCceEeecC
Confidence 34445555677776 49999999999765
No 28
>PHA02513 V1 structural protein V1; Reviewed
Probab=29.83 E-value=65 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHh
Q 030715 118 TYLVIPAFGAYQSFG 132 (173)
Q Consensus 118 l~L~IP~y~~Ykl~~ 132 (173)
..+++|+..+||+++
T Consensus 120 VlIiVPAvvaYkiyK 134 (135)
T PHA02513 120 VLIIVPAVVAYKIYK 134 (135)
T ss_pred HHHHHhHHhhhhhhc
Confidence 446799999999875
No 29
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=29.38 E-value=1.4e+02 Score=20.51 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=23.8
Q ss_pred Cccchhh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 030715 89 GGICGYL-HDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGFIKG 136 (173)
Q Consensus 89 ~Gl~ey~-~Diiylt~~v~~~sl~s~~~W~l~L~IP~y~~Ykl~~~i~p 136 (173)
+|+.||+ +|.-++-.+.-++.++.. +..++..+|-+...+.|
T Consensus 19 gGla~yf~id~tlVRll~vl~~~~~~------~~~~~ii~Yiia~~imP 61 (70)
T COG1983 19 GGLAEYFGIDPTLVRLLFVLLTLFGG------LTGFGIIAYIIAALIMP 61 (70)
T ss_pred hhHHHHhCCChHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHCC
Confidence 7888886 677777666555554433 22334455555555444
No 30
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=27.22 E-value=33 Score=14.93 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=5.5
Q ss_pred cccCCCCcc
Q 030715 83 GFDMSTGGI 91 (173)
Q Consensus 83 G~DL~~~Gl 91 (173)
|.||+.+|+
T Consensus 1 gf~l~GgGV 9 (10)
T PF08250_consen 1 GFSLGGGGV 9 (10)
T ss_pred CcccccCcC
Confidence 456766664
No 31
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=25.94 E-value=2.4e+02 Score=24.35 Aligned_cols=46 Identities=9% Similarity=0.218 Sum_probs=32.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhh------hHH-HHHHHHHHHHHHHHHHhhhhc
Q 030715 91 ICGYLHDVIYITSFVQVMSILS------EKF-WYTYLVIPAFGAYQSFGFIKG 136 (173)
Q Consensus 91 l~ey~~Diiylt~~v~~~sl~s------~~~-W~l~L~IP~y~~Ykl~~~i~p 136 (173)
..|-.||++++..+.|+...+. .-. -++.+.+|....|-.......
T Consensus 6 ~lELFfDLvFV~ai~~lt~~l~~~~~~~~~~~~~~~~f~~~w~~W~~~t~~~n 58 (354)
T PF06772_consen 6 WLELFFDLVFVFAISQLTHLLHHDPSWGGLLLEFLLLFLALWWIWSYQTWYAN 58 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988654 133 456666666666655544433
No 32
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=55 Score=33.24 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=29.2
Q ss_pred HHHHHHhhcCcccCCCC---CcccccccCCCCccch------hhhHHHHHHHH
Q 030715 61 PYQQLSAMAKPTYTDDG---ELIDGGFDMSTGGICG------YLHDVIYITSF 104 (173)
Q Consensus 61 ~~~~l~~~~rP~y~~~G---~Lv~~G~DL~~~Gl~e------y~~Diiylt~~ 104 (173)
++-+|.+. |.||..| .++|.|.|.+.+||-- =++|+|=-|-.
T Consensus 68 a~~FL~ky--PeYDGRgV~IaIlDtGvDP~apGl~vttdGkpKv~dviDctGa 118 (1304)
T KOG1114|consen 68 AYEFLKKY--PEYDGRGVTIAILDTGVDPSAPGLQVTTDGKPKVKDVIDCTGA 118 (1304)
T ss_pred HHHHHHhC--cCCCCCceEEEEeecCCCCCCCCceEecCCCcceeEEEecCCC
Confidence 34456655 9999988 6789999998877632 35676654433
No 33
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=24.20 E-value=2.6e+02 Score=25.71 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=9.6
Q ss_pred hhccCCCCCCCCCcch
Q 030715 134 IKGFLPQGSEGDTEDE 149 (173)
Q Consensus 134 i~p~~~~~~~~~~~~~ 149 (173)
+.|.+.+..+.|+.|.
T Consensus 204 i~P~f~K~~PLe~g~l 219 (428)
T KOG2719|consen 204 IAPLFGKFTPLEEGDL 219 (428)
T ss_pred hhhhhcCCCCCCCCch
Confidence 6777766655554444
No 34
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.44 E-value=27 Score=30.67 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHhcC
Q 030715 33 VVRMIIFHS 41 (173)
Q Consensus 33 l~~~~~~~~ 41 (173)
++.++|+|+
T Consensus 67 iIImlF~Rr 75 (381)
T PF05297_consen 67 IIIMLFKRR 75 (381)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 334556554
No 35
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=40 Score=27.55 Aligned_cols=19 Identities=47% Similarity=0.627 Sum_probs=12.3
Q ss_pred CcchHhHHHHHHHHHhhcc
Q 030715 146 TEDEKTRKKREKMEKKTSR 164 (173)
Q Consensus 146 ~~~~~~sKrq~K~Ekr~~k 164 (173)
+.+++.+||+.|+.|+.++
T Consensus 122 aaEeKTaKKRaKRqk~Kq~ 140 (213)
T KOG4055|consen 122 AAEEKTAKKRAKRQKKKQK 140 (213)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766554
No 36
>COG4291 Predicted membrane protein [Function unknown]
Probab=21.69 E-value=2.2e+02 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=16.7
Q ss_pred CCcccccccCCCCccchhhhHHHHHHHHH
Q 030715 77 GELIDGGFDMSTGGICGYLHDVIYITSFV 105 (173)
Q Consensus 77 G~Lv~~G~DL~~~Gl~ey~~Diiylt~~v 105 (173)
++-+.-|.|.. +---.-.+|.+|.+..+
T Consensus 154 ~~~~~rg~~fp-~~~~P~g~DFLYfs~vI 181 (228)
T COG4291 154 EKPIKRGLDFP-ETPEPDGWDFLYFSFVI 181 (228)
T ss_pred CCcccCCCCCC-CCCCCCccchhhhhHhh
Confidence 46666675442 11223468999988764
No 37
>PHA00739 V3 structural protein VP3
Probab=21.41 E-value=36 Score=24.29 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHh
Q 030715 118 TYLVIPAFGAYQSFG 132 (173)
Q Consensus 118 l~L~IP~y~~Ykl~~ 132 (173)
..+++|+..+||+++
T Consensus 76 VlIiVPAvv~Ykiyk 90 (92)
T PHA00739 76 VLIIVPAVVAYKIYK 90 (92)
T ss_pred HHHHhhhheeEEeee
Confidence 446799999999875
No 38
>PRK13854 type IV secretion system protein VirB3; Provisional
Probab=21.17 E-value=3.3e+02 Score=20.08 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=17.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHh
Q 030715 109 SILSEKFWYTYLVIPAFGAYQSFG 132 (173)
Q Consensus 109 sl~s~~~W~l~L~IP~y~~Ykl~~ 132 (173)
.++..+.|++.+++|++++-+...
T Consensus 39 ~i~~~~~~~~ll~ipl~~~~r~I~ 62 (108)
T PRK13854 39 IVIVQNPLYEVVLLPLWFGARLVV 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999988665544
No 39
>COG3702 VirB3 Type IV secretory pathway, VirB3 components [Intracellular trafficking and secretion]
Probab=20.40 E-value=2.8e+02 Score=20.50 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 030715 107 VMSILSEKFWYTYLVIPAFGAYQSFGF 133 (173)
Q Consensus 107 ~~sl~s~~~W~l~L~IP~y~~Ykl~~~ 133 (173)
++.+..+.+|++.+.+|..+.-.+-..
T Consensus 37 ivfl~~~~~l~l~I~~~lh~v~~i~~~ 63 (105)
T COG3702 37 IVFLIVNNPLYLLIAVPLHAVARIIVK 63 (105)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 445667999999999999997776553
No 40
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=20.14 E-value=3.4e+02 Score=21.74 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHH-HHHHhhhHHHH---HHHHHHHHHHHHHHhhh
Q 030715 93 GYLHDVIYITSFVQ-VMSILSEKFWY---TYLVIPAFGAYQSFGFI 134 (173)
Q Consensus 93 ey~~Diiylt~~v~-~~sl~s~~~W~---l~L~IP~y~~Ykl~~~i 134 (173)
...-|++++....- +..++...-|. +-++--+|.+|..|+.+
T Consensus 46 ~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ 91 (208)
T COG1280 46 IALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKAL 91 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888877766 34455544444 44555666666666653
Done!