Query 030715
Match_columns 173
No_of_seqs 108 out of 227
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 05:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b59b1 a.139.1.1 (B:104-163) 75.5 0.83 6E-05 27.7 2.3 29 66-102 20-48 (60)
2 d1s6la1 a.4.5.79 (A:21-80) Alk 33.2 7.5 0.00055 23.4 1.2 25 63-87 35-59 (60)
3 d2jn0a1 b.38.1.6 (A:4-53) Hypo 22.7 9.6 0.0007 22.1 0.3 9 67-75 14-22 (50)
4 d2ra2a1 b.38.1.6 (A:4-56) Unch 20.6 14 0.001 21.6 0.7 10 67-76 15-24 (53)
5 d2rd1a1 b.38.1.6 (A:22-73) Put 20.1 12 0.00085 21.9 0.2 10 67-76 15-24 (52)
6 d1pvma3 g.41.13.1 (A:143-178) 18.7 15 0.0011 19.3 0.5 10 70-79 13-22 (36)
7 d2k57a1 b.38.1.6 (A:2-53) Unch 18.6 15 0.0011 21.3 0.6 8 68-75 17-24 (52)
8 d3bdua1 b.38.1.6 (A:2-54) Unch 17.6 18 0.0013 21.1 0.7 10 67-76 16-25 (53)
9 d2rb6a1 b.38.1.6 (A:25-76) Unc 16.8 15 0.0011 21.3 0.2 10 67-76 16-25 (52)
10 d1wyka_ b.47.1.3 (A:) Viral ca 10.1 38 0.0028 23.4 0.7 14 68-81 103-116 (152)
No 1
>d2b59b1 a.139.1.1 (B:104-163) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]}
Probab=75.48 E-value=0.83 Score=27.73 Aligned_cols=29 Identities=14% Similarity=0.457 Sum_probs=20.7
Q ss_pred HhhcCcccCCCCCcccccccCCCCccchhhhHHHHHH
Q 030715 66 SAMAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYIT 102 (173)
Q Consensus 66 ~~~~rP~y~~~G~Lv~~G~DL~~~Gl~ey~~Diiylt 102 (173)
.+.+.|.|. .+.|||..|.+. ++|++++.
T Consensus 20 ~~~g~~~y~-------~~lDlN~dGaIn-m~Di~Iv~ 48 (60)
T d2b59b1 20 ATKGSANYV-------EELDINRNGAIN-MQDIMIVH 48 (60)
T ss_dssp CBTTSTTCC-------GGGSTTCSSBCS-HHHHHHHH
T ss_pred cccCCcchh-------hhcccccccccc-HHHHHHHH
Confidence 445566664 489999888664 78998863
No 2
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=33.18 E-value=7.5 Score=23.42 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.4
Q ss_pred HHHHhhcCcccCCCCCcccccccCC
Q 030715 63 QQLSAMAKPTYTDDGELIDGGFDMS 87 (173)
Q Consensus 63 ~~l~~~~rP~y~~~G~Lv~~G~DL~ 87 (173)
..++.+..-.||++|++|-.|.-|.
T Consensus 35 ~aL~~~p~tEyD~~G~ivG~GLTLR 59 (60)
T d1s6la1 35 AVLEQATSTEYDKDGNIIGYGLTLR 59 (60)
T ss_dssp HHHTTCCSSCEETTTEECCCCSSSS
T ss_pred HHHHhCCCceecCCCCEEeeeeeec
Confidence 3589999999999999999997663
No 3
>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]}
Probab=22.69 E-value=9.6 Score=22.12 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=6.5
Q ss_pred hhcCcccCC
Q 030715 67 AMAKPTYTD 75 (173)
Q Consensus 67 ~~~rP~y~~ 75 (173)
.-++|++|+
T Consensus 14 T~gKP~~D~ 22 (50)
T d2jn0a1 14 TDGKPEIDD 22 (50)
T ss_dssp BCCCCEEET
T ss_pred eCCCccccC
Confidence 457888886
No 4
>d2ra2a1 b.38.1.6 (A:4-56) Uncharacterized protein YgdI {Salmonella typhimurium [TaxId: 90371]}
Probab=20.55 E-value=14 Score=21.63 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=7.0
Q ss_pred hhcCcccCCC
Q 030715 67 AMAKPTYTDD 76 (173)
Q Consensus 67 ~~~rP~y~~~ 76 (173)
.-++|++|++
T Consensus 15 T~gKP~~D~d 24 (53)
T d2ra2a1 15 TDGKPQTDND 24 (53)
T ss_dssp CSSCCEECTT
T ss_pred eCCCccccCC
Confidence 4578888863
No 5
>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]}
Probab=20.10 E-value=12 Score=21.91 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=6.7
Q ss_pred hhcCcccCCC
Q 030715 67 AMAKPTYTDD 76 (173)
Q Consensus 67 ~~~rP~y~~~ 76 (173)
.-++|++|++
T Consensus 15 t~gKP~~D~d 24 (52)
T d2rd1a1 15 TQGKPQLDKE 24 (52)
T ss_dssp EESCCEEETT
T ss_pred cCCCccccCC
Confidence 3478888863
No 6
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=18.71 E-value=15 Score=19.30 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=8.1
Q ss_pred CcccCCCCCc
Q 030715 70 KPTYTDDGEL 79 (173)
Q Consensus 70 rP~y~~~G~L 79 (173)
.|.||++|++
T Consensus 13 ~pvy~~kgei 22 (36)
T d1pvma3 13 EPVYNEKGEI 22 (36)
T ss_dssp EEEECTTSCE
T ss_pred EEeecCCCcE
Confidence 5899999964
No 7
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=18.63 E-value=15 Score=21.35 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=5.9
Q ss_pred hcCcccCC
Q 030715 68 MAKPTYTD 75 (173)
Q Consensus 68 ~~rP~y~~ 75 (173)
-++|++|+
T Consensus 17 ~gkP~~d~ 24 (52)
T d2k57a1 17 VDTPKYDE 24 (52)
T ss_dssp SSCCEECT
T ss_pred CCCccccC
Confidence 46788886
No 8
>d3bdua1 b.38.1.6 (A:2-54) Uncharacterized protein ECA1013 {Erwinia carotovora [TaxId: 554]}
Probab=17.58 E-value=18 Score=21.09 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=7.0
Q ss_pred hhcCcccCCC
Q 030715 67 AMAKPTYTDD 76 (173)
Q Consensus 67 ~~~rP~y~~~ 76 (173)
.-++|++|++
T Consensus 16 T~gKP~~D~d 25 (53)
T d3bdua1 16 AEGKPKVDDE 25 (53)
T ss_dssp EESCCEECTT
T ss_pred eCCCceecCC
Confidence 3578888863
No 9
>d2rb6a1 b.38.1.6 (A:25-76) Uncharacterized protein SO0963 {Shewanella oneidensis [TaxId: 70863]}
Probab=16.76 E-value=15 Score=21.30 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=7.0
Q ss_pred hhcCcccCCC
Q 030715 67 AMAKPTYTDD 76 (173)
Q Consensus 67 ~~~rP~y~~~ 76 (173)
.-++|++|++
T Consensus 16 T~gKP~~D~d 25 (52)
T d2rb6a1 16 SDSKPKLDKT 25 (52)
T ss_dssp ESSCCEEETT
T ss_pred eCCCccccCC
Confidence 4578888863
No 10
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=10.09 E-value=38 Score=23.38 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=11.5
Q ss_pred hcCcccCCCCCccc
Q 030715 68 MAKPTYTDDGELID 81 (173)
Q Consensus 68 ~~rP~y~~~G~Lv~ 81 (173)
++||-+|.+|++|-
T Consensus 103 SGRpi~DN~GrVVa 116 (152)
T d1wyka_ 103 SGRPIMDNSGRVVA 116 (152)
T ss_dssp TTCEEECTTSCEEE
T ss_pred CCCccCcCCCcEEE
Confidence 68999999997653
Done!