STRING 9.05 
  AT1G68590 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT1G68590
plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; FUNCTIONS IN- structural constituent of ribosome; INVOLVED IN- translation; LOCATED IN- thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ribosomal protein, PSRP-3/Ycf65 (InterPro-IPR006924); BEST Arabidopsis thaliana protein match is- plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (TAIR-AT5G15760.1); Has 334 Blast hits [...] (166 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
PPL1
PPL1 (PsbP-like protein 1); calcium ion binding; PsbP-like protein 1 (PPL1); FUNCTIONS IN- calc [...] (230 aa)
      0.944
PSB28
PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN); Similar to PsbW subunit of photosystem II [...] (183 aa)
      0.944
AT5G52970
thylakoid lumen 15.0 kDa protein; thylakoid lumen 15.0 kDa protein; FUNCTIONS IN- molecular_fun [...] (223 aa)
      0.926
emb2184
emb2184 (embryo defective 2184); structural constituent of ribosome; embryo defective 2184 (emb [...] (144 aa)
      0.926
AT1G14345
oxidoreductase; oxidoreductase; FUNCTIONS IN- oxidoreductase activity; INVOLVED IN- oxidation r [...] (196 aa)
      0.925
CYP38
CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase; Encodes a chloroplast cyclophilin [...] (437 aa)
      0.924
PSAL
PSAL (photosystem I subunit L); Encodes subunit L of photosystem I reaction center. (219 aa)
      0.920
PSBO2
PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding; Encodes a protein which i [...] (331 aa)
      0.920
AT1G50900
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (175 aa)
       0.917
LIL3:1
LIL3-1; transcription factor; Encodes Lil3-1 (light-harvesting-like) protein. Belongs to the Lh [...] (262 aa)
       0.917
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: very high (>100%)
Permalink