BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030716
(173 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576477|ref|XP_002529130.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
gi|223531409|gb|EEF33243.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
Length = 180
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 132/182 (72%), Gaps = 15/182 (8%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILH-------------QNRTKPISRNQRLV 51
MA+QS V+ + T S P + K KT+I + +PISRN+RL
Sbjct: 1 MAIQSGVS-SILTYSPVPHRTPFCKSIKTSIFANPKISLLYSSTILDPKMRPISRNERLT 59
Query: 52 ALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQS 111
A+PE+LT E+ T+ + E I +E K V+VKQ+EKPRLVLKFIWMEKNIGLALDQ
Sbjct: 60 TFASPEALTVEDKTSETEEPISDDIIE-KVEVAVKQVEKPRLVLKFIWMEKNIGLALDQV 118
Query: 112 IPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
IPG+GTIPLS YFFWPRKDAWEELKTTLESKPWISQK MIILLNQATDIINLWQQSGGNL
Sbjct: 119 IPGHGTIPLSPYFFWPRKDAWEELKTTLESKPWISQKKMIILLNQATDIINLWQQSGGNL 178
Query: 172 TT 173
TT
Sbjct: 179 TT 180
>gi|224111708|ref|XP_002315948.1| predicted protein [Populus trichocarpa]
gi|222864988|gb|EEF02119.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/188 (61%), Positives = 130/188 (69%), Gaps = 20/188 (10%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTT--------ILH-----QNRTKPISRNQRL 50
S+A Q + FT SS P Q + K K T ++H + K +SRNQR
Sbjct: 3 SVAFQCGFSNVFTN-SSLPCQTPSCKTFKATFSTNPKPNLIHSSTFLDRKRKRVSRNQRY 61
Query: 51 VALATPESLTAE-----EATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIG 105
A PE+LT E +T + E+IPA E KA V VKQ+EKPRLVLKFIWMEKNIG
Sbjct: 62 TTFAAPEALTVETPIDTPPSTETEESIPAQGTE-KAEVLVKQVEKPRLVLKFIWMEKNIG 120
Query: 106 LALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 165
LALDQ IPG+GT+PLS YFFWPRKDAWEELK TLESKPWISQK MIILLNQATDIINLWQ
Sbjct: 121 LALDQVIPGHGTVPLSPYFFWPRKDAWEELKATLESKPWISQKKMIILLNQATDIINLWQ 180
Query: 166 QSGGNLTT 173
QSGGNLTT
Sbjct: 181 QSGGNLTT 188
>gi|224099355|ref|XP_002311451.1| predicted protein [Populus trichocarpa]
gi|222851271|gb|EEE88818.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 126/187 (67%), Gaps = 20/187 (10%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPI-------------SRNQRL 50
SMA QS VN FT S P + + K K TI + PI SRNQR
Sbjct: 3 SMAFQSGVNNVFTYYS-LPCRTPSCKTFKATISVNPKPNPIRSSTFFDRERRHVSRNQRY 61
Query: 51 VALATPESLTAE-----EATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIG 105
A PE+L AE + + E+IP E KA + VKQ+EKPRLVLKF+WMEKNIG
Sbjct: 62 TTFAVPEALAAETPADAPPSNAAGESIPIQETE-KAELVVKQVEKPRLVLKFVWMEKNIG 120
Query: 106 LALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 165
LALDQ IPG+GT+PLS YFFWPRKDAWEELK TLESKPWISQK MIILLNQATDIINLWQ
Sbjct: 121 LALDQVIPGHGTVPLSPYFFWPRKDAWEELKATLESKPWISQKKMIILLNQATDIINLWQ 180
Query: 166 QSGGNLT 172
QSGGNLT
Sbjct: 181 QSGGNLT 187
>gi|21554275|gb|AAM63350.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis
thaliana]
Length = 166
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 127/174 (72%), Gaps = 10/174 (5%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIP 119
TAE T T +T TP +T VK EK R+VLKF+WMEKNIGL LDQ +PG+GTIP
Sbjct: 56 TAE--TVTGIDTSDNTPQQTTK--VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIP 111
Query: 120 LSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
LS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQATDIINLWQQSGGNLT+
Sbjct: 112 LSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165
>gi|145326692|ref|NP_001077793.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
gi|332196696|gb|AEE34817.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
Length = 163
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/174 (61%), Positives = 127/174 (72%), Gaps = 13/174 (7%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIP 119
TAE T T +T TP +T +K EK R+VLKF+WMEKNIGL LDQ +PG+GTIP
Sbjct: 56 TAE--TVTGIDTSDNTPQQT-----IKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIP 108
Query: 120 LSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
LS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQATDIINLWQQSGGNLT+
Sbjct: 109 LSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 162
>gi|18409071|ref|NP_564934.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
gi|28380141|sp|Q9SX22.1|RRP31_ARATH RecName: Full=30S ribosomal protein 3-1, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3-1;
Short=PSRP-3 1; Flags: Precursor
gi|5734719|gb|AAD49984.1|AC008075_17 ESTs gb|H37416, gb|T21163, gb|T76138 and gb|AA651329 come from this
gene [Arabidopsis thaliana]
gi|28393198|gb|AAO42029.1| unknown protein [Arabidopsis thaliana]
gi|28827558|gb|AAO50623.1| unknown protein [Arabidopsis thaliana]
gi|332196695|gb|AEE34816.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
Length = 166
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 127/174 (72%), Gaps = 10/174 (5%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIP 119
TAE T T +T TP +T VK EK R+VLKF+WMEKNIGL LDQ +PG+GTIP
Sbjct: 56 TAE--TVTGIDTSDNTPQQTIK--VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIP 111
Query: 120 LSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
LS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQATDIINLWQQSGGNLT+
Sbjct: 112 LSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165
>gi|225452011|ref|XP_002283616.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 1
[Vitis vinifera]
gi|359488272|ref|XP_003633730.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 2
[Vitis vinifera]
Length = 176
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 126/179 (70%), Gaps = 10/179 (5%)
Query: 1 MLSSMALQSTVNGAFTTRSSFP-----SQKLTVKPTKTTILHQNRTKPISRNQRLVALAT 55
M+ SMA+Q N A + + FP + +L K + L+ R+ S N RL A
Sbjct: 1 MMLSMAVQPNPNAALKSYT-FPMSSNRNHRLMFKSSNALSLYSTRSA--STNLRLRASPA 57
Query: 56 PE-SLTAEEATTTSTETIPATPVET-KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIP 113
P ++ E ++ E++ A+P++ K GV VK +EKPRLVLKFIWMEKNIG+ALDQ+IP
Sbjct: 58 PVVAVAVSEQSSAPQESLSASPLDVEKLGVVVKPMEKPRLVLKFIWMEKNIGVALDQAIP 117
Query: 114 GYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLT 172
G+GTIPLS Y+FWPRKDAWEE+K LESKPWISQK MIILLNQATDIINLWQQSGGNL
Sbjct: 118 GHGTIPLSPYYFWPRKDAWEEIKVLLESKPWISQKQMIILLNQATDIINLWQQSGGNLA 176
>gi|296087288|emb|CBI33662.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 124/176 (70%), Gaps = 10/176 (5%)
Query: 4 SMALQSTVNGAFTTRSSFP-----SQKLTVKPTKTTILHQNRTKPISRNQRLVALATPE- 57
SMA+Q N A + + FP + +L K + L+ R+ S N RL A P
Sbjct: 3 SMAVQPNPNAALKSYT-FPMSSNRNHRLMFKSSNALSLYSTRSA--STNLRLRASPAPVV 59
Query: 58 SLTAEEATTTSTETIPATPVET-KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYG 116
++ E ++ E++ A+P++ K GV VK +EKPRLVLKFIWMEKNIG+ALDQ+IPG+G
Sbjct: 60 AVAVSEQSSAPQESLSASPLDVEKLGVVVKPMEKPRLVLKFIWMEKNIGVALDQAIPGHG 119
Query: 117 TIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLT 172
TIPLS Y+FWPRKDAWEE+K LESKPWISQK MIILLNQATDIINLWQQSGGNL
Sbjct: 120 TIPLSPYYFWPRKDAWEEIKVLLESKPWISQKQMIILLNQATDIINLWQQSGGNLA 175
>gi|297841583|ref|XP_002888673.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297334514|gb|EFH64932.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 162
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/154 (65%), Positives = 118/154 (76%), Gaps = 5/154 (3%)
Query: 21 FPSQKLTVKPTKTTILHQNRT-KPISRNQRLVALATPESLTAEEATTTSTETIPATPVET 79
F SQ + T +T L N+T KPIS ++++ LA PE+LTAE T T +T TP +T
Sbjct: 12 FISQHPKLSITASTPLFLNQTTKPISVKRKIITLAAPETLTAE--TVTGIDTSDNTPQQT 69
Query: 80 KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTL 139
VK EK R+VLKF+WMEKNIGL LDQ +PG+GTIPLS YFFWPRKDAWEELK+TL
Sbjct: 70 TK--VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTL 127
Query: 140 ESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
E+KPWISQK MIILLNQATDIINLWQQSGGNLT+
Sbjct: 128 EAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 161
>gi|147784271|emb|CAN68341.1| hypothetical protein VITISV_004015 [Vitis vinifera]
Length = 179
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 122/186 (65%), Gaps = 29/186 (15%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTI--------LHQN--------RTKPISRNQ 48
MA QS++N F SSFPSQ + K +KT L Q RTKP + Q
Sbjct: 1 MAAQSSINSTFIC-SSFPSQNPSFKISKTPFPIPLNPKPLFQRSSTXTPGIRTKPSMKLQ 59
Query: 49 RLVALATPESLTAEEATTTSTETIPATPVET----KAGVSVKQLEKPRLVLKFIWMEKNI 104
RL A E+ TAE +T A P+ + K V VK +E PRLVLKF+WMEKNI
Sbjct: 60 RLAVSAASEARTAEPST--------ANPISSEENEKVEVIVKVMETPRLVLKFVWMEKNI 111
Query: 105 GLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLW 164
G+ALDQ IPGYGT PLS Y+FWP KDAWEELK+TLESKPWISQK MIILLN+ATDIINLW
Sbjct: 112 GVALDQVIPGYGTNPLSPYYFWPGKDAWEELKSTLESKPWISQKKMIILLNEATDIINLW 171
Query: 165 QQSGGN 170
QQSGGN
Sbjct: 172 QQSGGN 177
>gi|449455804|ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
gi|449484535|ref|XP_004156909.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
Length = 192
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 125/200 (62%), Gaps = 36/200 (18%)
Query: 1 MLSSMA--LQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPIS------------- 45
M+ SMA LQ VN F T S+F +Q + KP K + RT S
Sbjct: 1 MMLSMAVQLQPNVNFCFNT-SNFTAQTAS-KPFKLPFAVRQRTTASSCIPNFHTVFGLQL 58
Query: 46 -----RNQRLVALATP--------ESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPR 92
R Q + A A P E L A+++ + S+ PV+ K GV VK +EKPR
Sbjct: 59 RRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSS------PVKEKLGVVVKPMEKPR 112
Query: 93 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 152
LVLKFIWMEKNIG+ALDQ IPG+GTIPLS Y+FWPRKDAWEELK LESKPWISQK MII
Sbjct: 113 LVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 172
Query: 153 LLNQATDIINLWQQSGGNLT 172
LLNQATDIINLWQQ GGNL
Sbjct: 173 LLNQATDIINLWQQGGGNLA 192
>gi|351723097|ref|NP_001236243.1| uncharacterized protein LOC100306266 [Glycine max]
gi|255628049|gb|ACU14369.1| unknown [Glycine max]
Length = 158
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 58 SLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGT 117
SL+ A TT+ P TP K GV VK EKPRLVLKFIWMEKNIG+ALDQ +PG+GT
Sbjct: 45 SLSVSAAETTAFAA-PPTPQPEKLGVVVKPTEKPRLVLKFIWMEKNIGIALDQMVPGHGT 103
Query: 118 IPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLT 172
IPLS Y+FWPRKDAWEELK LE+KPWISQK MIILLNQATDIINLWQQSGGNL+
Sbjct: 104 IPLSPYYFWPRKDAWEELKELLENKPWISQKQMIILLNQATDIINLWQQSGGNLS 158
>gi|28380123|sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|7578871|gb|AAF64163.1|AF239218_1 plastid-specific ribosomal protein 3 precursor [Spinacia oleracea]
Length = 179
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 9/178 (5%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNR---TKP----ISRNQRLVALATP 56
SMA+Q +N A S + S KL++KP KT + + P + + P
Sbjct: 3 SMAVQPNIN-AIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVAP 61
Query: 57 ESLTAEEATTTSTETIPATPV-ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGY 115
E+++ + V + K V VK ++KPRLVLKFIWMEKNIGLALDQ+IPG+
Sbjct: 62 ETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGH 121
Query: 116 GTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
GT+PLS Y+FWPRKDAWEELK LE+KPWISQK MIILLNQATDIINLWQQSGGNL +
Sbjct: 122 GTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS 179
>gi|388507154|gb|AFK41643.1| unknown [Lotus japonicus]
Length = 175
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 51 VALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQ 110
+A++ E+ +A A +T +P K GV VK +KPRLVLKFIWMEKNIG+ALDQ
Sbjct: 55 LAVSAAETPSAAVAVAEQDDTS-LSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQ 113
Query: 111 SIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
++PG+GTIPLS Y+FWPRKDAWEELK LESKPWISQK MIILLNQATDIINLWQQSGGN
Sbjct: 114 AVPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGN 173
Query: 171 LT 172
L+
Sbjct: 174 LS 175
>gi|388517745|gb|AFK46934.1| unknown [Lotus japonicus]
Length = 175
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 51 VALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQ 110
+A++ E+ +A A +T +P K GV VK +KPRLVLKFIWMEKNIG+ALDQ
Sbjct: 55 LAVSAAETPSAAVAVAEQDDTS-LSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQ 113
Query: 111 SIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
++PG+GTIPLS Y+FWPRKDAWEELK LESKPWISQK MIILLNQATDIINLWQQSGGN
Sbjct: 114 AVPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGN 173
Query: 171 LT 172
L+
Sbjct: 174 LS 175
>gi|357501007|ref|XP_003620792.1| 30S ribosomal protein [Medicago truncatula]
gi|217075300|gb|ACJ86010.1| unknown [Medicago truncatula]
gi|355495807|gb|AES77010.1| 30S ribosomal protein [Medicago truncatula]
gi|388491518|gb|AFK33825.1| unknown [Medicago truncatula]
Length = 161
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/98 (80%), Positives = 85/98 (86%)
Query: 76 PVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEEL 135
P K GV VK +KPRLVLKFIWMEKNIG+ LDQ IPG+GTIPLS Y+FWPRKDAWEEL
Sbjct: 64 PQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEEL 123
Query: 136 KTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
K LESKPWISQK MIILLNQATDIINLWQQSGGNL++
Sbjct: 124 KELLESKPWISQKQMIILLNQATDIINLWQQSGGNLSS 161
>gi|225423933|ref|XP_002279011.1| PREDICTED: 30S ribosomal protein 3-1, chloroplastic-like [Vitis
vinifera]
Length = 146
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 110/166 (66%), Gaps = 22/166 (13%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESLTAEEA 64
MA QS++N F S FPSQ + K KT PI N + + L +
Sbjct: 1 MAAQSSINSTFICYS-FPSQNPSFKIPKTPF-------PIPLNPKPLFLWS--------- 43
Query: 65 TTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYF 124
+T T I +E V VK +E PRLVLKF+WMEKNIG+ALDQ IPGYGT PLS Y+
Sbjct: 44 -STDTPGIRTKLIE----VIVKVMETPRLVLKFVWMEKNIGVALDQVIPGYGTNPLSPYY 98
Query: 125 FWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
FWP KDAWEELK+TLESKPWISQK MIILLN+ATDIINLWQQSGGN
Sbjct: 99 FWPGKDAWEELKSTLESKPWISQKKMIILLNEATDIINLWQQSGGN 144
>gi|15242377|ref|NP_197080.1| 30S ribosomal protein 3-2 [Arabidopsis thaliana]
gi|28380137|sp|Q9LFV0.1|RRP32_ARATH RecName: Full=30S ribosomal protein 3-2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3-2;
Short=PSRP-3 2; Flags: Precursor
gi|9755621|emb|CAC01775.1| ribosomal protein 3 precursor-like protein [Arabidopsis thaliana]
gi|26450781|dbj|BAC42499.1| putative ribosomal protein 3 precursor [Arabidopsis thaliana]
gi|28372914|gb|AAO39939.1| At5g15760 [Arabidopsis thaliana]
gi|332004819|gb|AED92202.1| 30S ribosomal protein 3-2 [Arabidopsis thaliana]
Length = 183
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 17/184 (9%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR--------NQRLV----A 52
MA+Q+ + +F R++ PSQKL+ KP L + KP SR NQ + +
Sbjct: 1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPSLSCSTWNQGQIPARHS 59
Query: 53 LATPESLTAEEATTTSTETIPAT---PV-ETKAGVSVKQLEKPRLVLKFIWMEKNIGLAL 108
P + T + +P + P+ + K V VK LEKP++VLKF+WM+K+IG+AL
Sbjct: 60 CINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVAL 119
Query: 109 DQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 168
D IPG+GTIPLS Y+FWPRKDAWEELKT LESKPWIS+ + LLNQATDIINLWQ SG
Sbjct: 120 DHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSG 179
Query: 169 GNLT 172
G+L+
Sbjct: 180 GDLS 183
>gi|297807599|ref|XP_002871683.1| hypothetical protein ARALYDRAFT_488420 [Arabidopsis lyrata subsp.
lyrata]
gi|297317520|gb|EFH47942.1| hypothetical protein ARALYDRAFT_488420 [Arabidopsis lyrata subsp.
lyrata]
Length = 183
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 115/187 (61%), Gaps = 23/187 (12%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTIL-------------------HQNRTKPIS 45
MA+QS + +F R++ PSQKL+ K L Q T+
Sbjct: 1 MAVQSNQSASFGFRTASPSQKLSSKHVVYISLATKLKYSSLASISCSTWNPGQIPTRHSG 60
Query: 46 RNQRLVALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIG 105
+N + A A P +LT S E+ P + K V VK LEKP++VLKF+WM+K+IG
Sbjct: 61 KNPGIFASA-PSNLTFSHEPPES-ESPPLG--KKKMRVLVKPLEKPKVVLKFVWMQKDIG 116
Query: 106 LALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 165
+ALD IPG+GTIPLS Y+FWPRKDAWEELK LESKPWIS+ + LLNQATDIINLWQ
Sbjct: 117 VALDHMIPGFGTIPLSPYYFWPRKDAWEELKALLESKPWISELHRVFLLNQATDIINLWQ 176
Query: 166 QSGGNLT 172
SGG+L+
Sbjct: 177 SSGGDLS 183
>gi|255580309|ref|XP_002530983.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
gi|223529435|gb|EEF31395.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
Length = 174
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 113/173 (65%), Gaps = 8/173 (4%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTT---ILHQNRTKPISRNQRLVALATPESLTA 61
MA+Q + + + SQ L +KP K + I Q ++ +S + L T + L
Sbjct: 1 MAIQPKIKSSLKP-VNLTSQTLFLKPLKISTPFISFQPKSSYLSIHSPATTLKTIQDLPK 59
Query: 62 EEATTTSTETIPATPV----ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGT 117
+ + ++ ++I + V + K GV VK +EKPR+VLK IWMEK IG+ LDQ IPG+GT
Sbjct: 60 LKLSASAADSILSQEVSPTHKEKLGVVVKPMEKPRIVLKLIWMEKAIGVGLDQVIPGFGT 119
Query: 118 IPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
IPLS Y+FWP++DAWE+LK LESKPWISQK M ILLNQATDIINLWQ SG N
Sbjct: 120 IPLSPYYFWPKEDAWEQLKVLLESKPWISQKQMHILLNQATDIINLWQDSGCN 172
>gi|212722148|ref|NP_001132530.1| uncharacterized protein LOC100193993 [Zea mays]
gi|194694650|gb|ACF81409.1| unknown [Zea mays]
gi|195604602|gb|ACG24131.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|195605154|gb|ACG24407.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|413918560|gb|AFW58492.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
Length = 177
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 80/96 (83%)
Query: 78 ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKT 137
E + V V + + P LVLKFIWMEKNIG+ALDQ +PGYG+IPLS Y+FWPRKDAWEEL+
Sbjct: 82 EAENKVVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRA 141
Query: 138 TLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
LE K WISQK MIILLNQATDIINLWQQ GGNL+T
Sbjct: 142 KLEEKEWISQKQMIILLNQATDIINLWQQGGGNLST 177
>gi|357163969|ref|XP_003579907.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like
[Brachypodium distachyon]
Length = 180
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 112/179 (62%), Gaps = 12/179 (6%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILH----QNRTKPISRNQRLVALATPES-- 58
M++ +R + K P+ +++ H ++R P+ R+ R +A A E+
Sbjct: 4 MSVHPATTATLVSRPRLSAPKSPASPSTSSLPHLVHFKSRRLPL-RSLRGLAAAAVEAEQ 62
Query: 59 ----LTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 114
L EE + + E + V+V + + P LVLKFIWMEKNIG+ALDQ +PG
Sbjct: 63 SFVGLGEEEPEVGAADADAVVEGE-EYKVAVPERQDPMLVLKFIWMEKNIGIALDQMVPG 121
Query: 115 YGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
+G+IPLS Y+FWPRKDAWEEL+ LE K WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 122 FGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 180
>gi|242073370|ref|XP_002446621.1| hypothetical protein SORBIDRAFT_06g019030 [Sorghum bicolor]
gi|241937804|gb|EES10949.1| hypothetical protein SORBIDRAFT_06g019030 [Sorghum bicolor]
Length = 180
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 80/96 (83%)
Query: 78 ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKT 137
E + V V + + P LVLKFIWMEKNIG+ALDQ +PGYG+IPLS Y+FWPRKDAWEEL+
Sbjct: 85 EAENKVVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRA 144
Query: 138 TLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
LE K WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 145 KLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 180
>gi|226528607|ref|NP_001148519.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|195619976|gb|ACG31818.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
Length = 178
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 80/96 (83%)
Query: 78 ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKT 137
E + V V + + P LVLKFIWMEKNIG+ALDQ +PGYG+IPLS Y+FWPRKDAWEEL+
Sbjct: 83 EAENKVVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRA 142
Query: 138 TLESKPWISQKMMIILLNQATDIINLWQQSGGNLTT 173
LE K WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 143 KLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 178
>gi|115458788|ref|NP_001052994.1| Os04g0461100 [Oryza sativa Japonica Group]
gi|38344967|emb|CAD40987.2| OSJNBa0072F16.12 [Oryza sativa Japonica Group]
gi|113564565|dbj|BAF14908.1| Os04g0461100 [Oryza sativa Japonica Group]
gi|116310450|emb|CAH67455.1| H0219H12.12 [Oryza sativa Indica Group]
gi|125548585|gb|EAY94407.1| hypothetical protein OsI_16175 [Oryza sativa Indica Group]
gi|125590631|gb|EAZ30981.1| hypothetical protein OsJ_15062 [Oryza sativa Japonica Group]
gi|215695522|dbj|BAG90713.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 183
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 78/91 (85%)
Query: 83 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 142
V V + + P LVLKFIWMEKNIG+ALDQ +PGYG+IPLS Y+FWPRKDAWEEL+ LE K
Sbjct: 93 VKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEK 152
Query: 143 PWISQKMMIILLNQATDIINLWQQSGGNLTT 173
WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 153 EWISQKQMIILLNQATDIINLWQQGGGSLST 183
>gi|116792964|gb|ABK26571.1| unknown [Picea sitchensis]
gi|116793098|gb|ABK26613.1| unknown [Picea sitchensis]
Length = 211
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 78/94 (82%)
Query: 78 ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKT 137
+ KA V VK K R+VLKFIW+EKNIGLALDQ +PG+GTIPLS Y+FWPRKDAWEELK
Sbjct: 118 KNKAKVVVKAPRKQRIVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEELKA 177
Query: 138 TLESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
LESK WISQK IILLNQATDIINLWQQ G N+
Sbjct: 178 KLESKSWISQKRTIILLNQATDIINLWQQGGSNI 211
>gi|149390967|gb|ABR25501.1| plastid-specific 30S ribosomal protein [Oryza sativa Indica Group]
Length = 176
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 78/91 (85%)
Query: 83 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 142
V V + + P LVLKFIWMEKNIG+ALDQ +PGYG+IPLS Y+FWPRKDAWEEL+ LE K
Sbjct: 86 VKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEK 145
Query: 143 PWISQKMMIILLNQATDIINLWQQSGGNLTT 173
WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 146 EWISQKQMIILLNQATDIINLWQQGGGSLST 176
>gi|383129941|gb|AFG45706.1| hypothetical protein 0_5104_02, partial [Pinus taeda]
Length = 121
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 79/97 (81%)
Query: 75 TPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEE 134
T + KA V VK RLVLKFIW+EKNIGLALDQ +PG+GTIPLS Y+FWPRKDAWEE
Sbjct: 25 TEGKNKAKVVVKAPRNQRLVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEE 84
Query: 135 LKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
LK LESK WISQK +IILLNQATDIINLWQQ G N+
Sbjct: 85 LKAKLESKSWISQKRIIILLNQATDIINLWQQGGSNI 121
>gi|6136559|sp|O48609.1|RRP3_HORVU RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|2695931|emb|CAA10984.1| hypothetical protein [Hordeum vulgare subsp. vulgare]
gi|326492988|dbj|BAJ84955.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 83 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 142
V V + + P LVLKFIWMEKNIG+ALDQ +PG G+IPLS Y+FWPRKDAWEEL+ LE K
Sbjct: 91 VEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEK 150
Query: 143 PWISQKMMIILLNQATDIINLWQQSGGNLTT 173
WISQK MIILLNQATDIINLWQQ GG+L+T
Sbjct: 151 EWISQKQMIILLNQATDIINLWQQGGGSLST 181
>gi|224077158|ref|XP_002305158.1| predicted protein [Populus trichocarpa]
gi|222848122|gb|EEE85669.1| predicted protein [Populus trichocarpa]
Length = 175
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 111/178 (62%), Gaps = 12/178 (6%)
Query: 1 MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRN-QRLVALATPESL 59
ML+SMA Q + S+FPSQ L KP KT I + KP + + L L TP L
Sbjct: 1 MLASMATQPKIQTHLQP-STFPSQSLLRKPLKTPIF-SIKPKPFCFHLKSLYTLKTPARL 58
Query: 60 TAEEATTTSTETIPATPVET-------KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSI 112
+ + +T+P E K GV VK +EK R+VLKFIWM+K IG+AL+Q I
Sbjct: 59 KL--SAPKAQQTLPEEEKENETSTEKEKLGVVVKPIEKSRVVLKFIWMQKVIGIALNQVI 116
Query: 113 PGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
PG+GTIPLS Y+FWP++DAWE+L+ L KPWIS+K + LLNQATDII LWQ +G N
Sbjct: 117 PGHGTIPLSPYYFWPKEDAWEQLRLLLVGKPWISRKQLHDLLNQATDIIELWQDTGSN 174
>gi|90657548|gb|ABD96848.1| hypothetical protein [Cleome spinosa]
Length = 182
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 76/97 (78%)
Query: 75 TPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEE 134
+P + K VK LEKPRLVLKF+WM+K+IG+ LDQ + GYGTIPLS Y+FWPRKDAWEE
Sbjct: 85 SPKKKKLRAVVKPLEKPRLVLKFLWMQKDIGIGLDQMVDGYGTIPLSPYYFWPRKDAWEE 144
Query: 135 LKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
LK LESKPWIS + LLNQAT+IINLWQ GG L
Sbjct: 145 LKVLLESKPWISNAHRVFLLNQATEIINLWQSGGGGL 181
>gi|414586872|tpg|DAA37443.1| TPA: plastid-specific 30S ribosomal protein 3, mRNA isoform 1 [Zea
mays]
gi|414586873|tpg|DAA37444.1| TPA: hypothetical protein ZEAMMB73_159189 [Zea mays]
Length = 82
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 73/81 (90%)
Query: 93 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 152
LVLKFIWMEKNIG+ALDQ +PGYG+IPLS Y+FWPRKDAWEEL+ LE K WISQK MII
Sbjct: 2 LVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMII 61
Query: 153 LLNQATDIINLWQQSGGNLTT 173
LLNQATDIINLWQQ GG+L+T
Sbjct: 62 LLNQATDIINLWQQGGGSLST 82
>gi|168052440|ref|XP_001778658.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669976|gb|EDQ56553.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 96/154 (62%), Gaps = 8/154 (5%)
Query: 20 SFPSQKLTVKPTKTTILHQNRTKPI--SRNQRLVALATPESLTAEEATTTSTETIPATPV 77
+F + KP + Q+ SR QRL A+ E+ +E +
Sbjct: 60 AFQGAAVVAKPLRVCRRRQDDGVEFLQSRMQRLSVKASAEAAESEMVLNKPQGS------ 113
Query: 78 ETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKT 137
K V+V +K R++L+F+W+EKNIG+ LDQ +PG+GT+PLS YFFWPRKDAWEELK
Sbjct: 114 GKKKKVAVAAPKKQRVLLRFLWLEKNIGIGLDQVVPGHGTVPLSPYFFWPRKDAWEELKA 173
Query: 138 TLESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
L+SK WIS+K IILLNQATDIINLWQQ+ +L
Sbjct: 174 KLDSKGWISRKRTIILLNQATDIINLWQQNATDL 207
>gi|302758326|ref|XP_002962586.1| hypothetical protein SELMODRAFT_165619 [Selaginella moellendorffii]
gi|300169447|gb|EFJ36049.1| hypothetical protein SELMODRAFT_165619 [Selaginella moellendorffii]
Length = 184
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 85/115 (73%)
Query: 57 ESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYG 116
+S A+E T T ++ + + K ++++ K L L+F+WMEKNIG+ALDQ +PG+G
Sbjct: 70 DSKDAQEETPEPTSSVYSDNLSKKDKLAIRSAGKQILSLRFLWMEKNIGIALDQVVPGHG 129
Query: 117 TIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
TIPLS ++FWP+KDAWEELK LESKPWIS++ IILLNQATDIINLWQQ +
Sbjct: 130 TIPLSPFYFWPKKDAWEELKAKLESKPWISRRRTIILLNQATDIINLWQQKASSF 184
>gi|116784544|gb|ABK23386.1| unknown [Picea sitchensis]
gi|116786074|gb|ABK23962.1| unknown [Picea sitchensis]
Length = 205
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 70/83 (84%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
K R+VLKFIW+EKNIGLALDQ +PG+GTI LS Y+FWPRKDAWEELK LES W+SQK
Sbjct: 123 RKQRVVLKFIWLEKNIGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWVSQK 182
Query: 149 MMIILLNQATDIINLWQQSGGNL 171
IILLNQATDIINLWQQ G N+
Sbjct: 183 RTIILLNQATDIINLWQQVGSNI 205
>gi|148907868|gb|ABR17057.1| unknown [Picea sitchensis]
Length = 205
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 69/83 (83%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
K R+VLKFIW+EKNIGLALDQ +PG+GTI LS Y+FWPRKDAWEELK LES W+SQK
Sbjct: 123 RKQRVVLKFIWLEKNIGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWVSQK 182
Query: 149 MMIILLNQATDIINLWQQSGGNL 171
IILLNQA DIINLWQQ G N+
Sbjct: 183 RTIILLNQAMDIINLWQQVGSNI 205
>gi|388508542|gb|AFK42337.1| unknown [Lotus japonicus]
Length = 73
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 68/73 (93%)
Query: 100 MEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATD 159
MEKNIG+ALDQ++PG+ TIPLS Y+FWPRKDAWEELK LESKPWISQK MIILLNQATD
Sbjct: 1 MEKNIGIALDQAVPGHDTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 60
Query: 160 IINLWQQSGGNLT 172
IINLWQQSGGNL+
Sbjct: 61 IINLWQQSGGNLS 73
>gi|168003682|ref|XP_001754541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694162|gb|EDQ80511.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
+K R++L+F+W+EKNIG+ALDQ +PG+GTIPLS Y+FWPRKDAWEELK L+SK WIS+K
Sbjct: 26 KKQRVLLRFLWLEKNIGIALDQVVPGHGTIPLSPYYFWPRKDAWEELKAKLDSKGWISRK 85
Query: 149 MMIILLNQATDIINLWQQSGGNL 171
IILLNQATDIINLWQQ+ L
Sbjct: 86 RTIILLNQATDIINLWQQNAAEL 108
>gi|302797480|ref|XP_002980501.1| hypothetical protein SELMODRAFT_112322 [Selaginella moellendorffii]
gi|300152117|gb|EFJ18761.1| hypothetical protein SELMODRAFT_112322 [Selaginella moellendorffii]
Length = 93
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 74/92 (80%)
Query: 80 KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTL 139
K ++++ K L L+F+WMEKNIG+ALDQ +PG+GTIPLS ++FWP+KDAWEELK L
Sbjct: 2 KDKLAIRSAGKQILSLRFLWMEKNIGIALDQVVPGHGTIPLSPFYFWPKKDAWEELKAKL 61
Query: 140 ESKPWISQKMMIILLNQATDIINLWQQSGGNL 171
ESKPWIS++ IILLNQATDIINLWQQ +
Sbjct: 62 ESKPWISRRRTIILLNQATDIINLWQQKASSF 93
>gi|124112133|ref|YP_001019068.1| hypothetical chloroplast RF65 [Chlorokybus atmophyticus]
gi|124012240|gb|ABM87974.1| hypothetical chloroplast RF65 [Chlorokybus atmophyticus]
Length = 112
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LKF+W+EKN+G+A+DQ + G GT P+++YFFWPRKDAWEEL+ L +KPWIS I
Sbjct: 8 KFILKFLWLEKNLGVAVDQ-VTGKGTSPVTEYFFWPRKDAWEELRDALATKPWISYDDSI 66
Query: 152 ILLNQATDIINLWQQSGGNLTT 173
+LLN+ TD+INLWQ+ L T
Sbjct: 67 LLLNETTDVINLWQEEKKPLLT 88
>gi|220905907|ref|YP_002481218.1| hypothetical protein Cyan7425_0465 [Cyanothece sp. PCC 7425]
gi|259494580|sp|B8HTT7.1|RRP3_CYAP4 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|219862518|gb|ACL42857.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7425]
Length = 109
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 66/95 (69%), Gaps = 6/95 (6%)
Query: 76 PVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEEL 135
PV+T VS+ Q +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+L
Sbjct: 2 PVQTILEVSLSQF-----ILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQL 55
Query: 136 KTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
KT LE K WIS+ I LLN+ATDIIN WQ+ G N
Sbjct: 56 KTELEKKTWISEADRIALLNRATDIINYWQEEGRN 90
>gi|385269068|ref|YP_006234197.1| putativ ribosomal protein S3/Ycf65 [Eutreptiella gymnastica]
gi|384070824|emb|CCE26484.1| putativ ribosomal protein S3/Ycf65 [Eutreptiella gymnastica]
Length = 98
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ VLKF+W+EK+I +ALDQ I G+ T P+++YFFWPRKDAWEELK LE+K WI Q I
Sbjct: 3 KFVLKFLWLEKSIAVALDQQI-GFNTSPITEYFFWPRKDAWEELKNELETKLWIDQNEAI 61
Query: 152 ILLNQATDIINLWQQS 167
++LNQ T++IN WQ+
Sbjct: 62 VILNQTTEVINYWQEE 77
>gi|22297845|ref|NP_681092.1| hypothetical protein tlr0301 [Thermosynechococcus elongatus BP-1]
gi|28380122|sp|P59327.1|RRP3_THEEB RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|22294022|dbj|BAC07854.1| ycf65 [Thermosynechococcus elongatus BP-1]
Length = 108
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Query: 83 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 142
+S ++LE R L+ +W+EK++ +A+DQ I G GT PL+ YFFWPR DAWE LK LE K
Sbjct: 3 ISFRRLELSRFTLRVLWLEKDVAIAVDQ-IVGKGTSPLTSYFFWPRTDAWELLKAELEKK 61
Query: 143 PWISQKMMIILLNQATDIINLWQQSGGN 170
WI++ I LLN+AT+IIN WQ+ G N
Sbjct: 62 SWITEAERIELLNRATEIINYWQEEGKN 89
>gi|440801925|ref|YP_007317172.1| hypothetical protein RF65 (chloroplast) [Monomorphina aenigmatica]
gi|429484604|gb|AFZ88774.1| hypothetical protein RF65 (chloroplast) [Monomorphina aenigmatica]
Length = 101
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LKF+W+E++IG++LDQ I G + PL++YFFWP+KDAWEE+K LESKPWISQ I
Sbjct: 3 KFLLKFLWLERSIGVSLDQVI-GDRSTPLTEYFFWPQKDAWEEIKNFLESKPWISQTEAI 61
Query: 152 ILLNQATDIINLWQQSGG 169
LLNQ T++IN WQ+ G
Sbjct: 62 SLLNQITEVINYWQEKDG 79
>gi|434394881|ref|YP_007129828.1| 30S ribosomal protein 3 [Gloeocapsa sp. PCC 7428]
gi|428266722|gb|AFZ32668.1| 30S ribosomal protein 3 [Gloeocapsa sp. PCC 7428]
Length = 99
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI+ + +
Sbjct: 3 KFILKVLWLDENVALAVDQVV-GKGTSPLTRYFFWPRNDAWEELKNELESKNWITDQERV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|428225729|ref|YP_007109826.1| ribosomal protein PSRP-3/Ycf65 [Geitlerinema sp. PCC 7407]
gi|427985630|gb|AFY66774.1| ribosomal protein PSRP-3/Ycf65 [Geitlerinema sp. PCC 7407]
Length = 99
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W+++N+ LA+DQ I G GT PL+ YFFWPR DAWE+LKT LE+K WI+ +
Sbjct: 3 RFILKVLWLDENVALAVDQ-IVGKGTSPLTSYFFWPRNDAWEQLKTELEAKHWITDNERV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|11465817|ref|NP_053961.1| putative ribosomal protein 3 [Porphyra purpurea]
gi|1723407|sp|P51351.1|RRP3_PORPU RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|1276817|gb|AAC08237.1| ORF99 (chloroplast) [Porphyra purpurea]
gi|378787388|gb|AFC40019.1| hypothetical protein [Porphyra umbilicalis]
Length = 99
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ LK +W+E NI +A+DQ I G GT PL+ YFFWPR DAWEELK LESKPWI+++ I
Sbjct: 3 KFTLKVLWLENNIAIAIDQ-IVGNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+ T++IN WQ+ G
Sbjct: 62 ELLNKTTEVINYWQEEG 78
>gi|90994542|ref|YP_537032.1| putative ribosomal protein 3 [Pyropia yezoensis]
gi|122194667|sp|Q1XDD6.1|RRP3_PORYE RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|90819106|dbj|BAE92475.1| unnamed protein product [Pyropia yezoensis]
Length = 102
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
Query: 83 VSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESK 142
+ +K L K LK +W+E NI +A+DQ I G GT PL+ YFFWPR DAWEELK LESK
Sbjct: 1 MEIKNLSK--FTLKVLWLENNIAIAIDQ-IVGNGTSPLTSYFFWPRNDAWEELKAELESK 57
Query: 143 PWISQKMMIILLNQATDIINLWQQSG 168
PWI+++ I LLN+ T++IN WQ+ G
Sbjct: 58 PWIAERDRIELLNKTTEVINYWQEEG 83
>gi|254414667|ref|ZP_05028432.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178515|gb|EDX73514.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Coleofasciculus chthonoplastes PCC 7420]
Length = 99
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E+N+ LA+DQ + G GT PL+ YFFWPR DAWE++K LE+K WIS+ +
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRNDAWEQIKNELEAKHWISEMDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLNQAT++IN WQ+ G N
Sbjct: 62 ELLNQATEVINYWQEEGKN 80
>gi|427707892|ref|YP_007050269.1| 30S ribosomal protein 3 [Nostoc sp. PCC 7107]
gi|427360397|gb|AFY43119.1| 30S ribosomal protein 3 [Nostoc sp. PCC 7107]
Length = 99
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI++ +
Sbjct: 3 KFILKILWLEDNVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITELDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|282899704|ref|ZP_06307668.1| ribosomal protein PSRP-3/Ycf65 [Cylindrospermopsis raciborskii
CS-505]
gi|281195583|gb|EFA70516.1| ribosomal protein PSRP-3/Ycf65 [Cylindrospermopsis raciborskii
CS-505]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W++ N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDDNVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDPDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGKN 80
>gi|11466424|ref|NP_038428.1| hypothetical chloroplast RF65 [Mesostigma viride]
gi|12230814|sp|Q9MUN2.1|RRP3_MESVI RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|7259567|gb|AAF43868.1|AF166114_80 hypothetical chloroplast RF65 (chloroplast) [Mesostigma viride]
Length = 123
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ VLKF+W+EKN+ + +DQ + G P+++YFFWPRKDAWEELK L +KPWIS I
Sbjct: 20 KFVLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESI 78
Query: 152 ILLNQATDIINLWQQS 167
LLNQ TD+IN WQ+
Sbjct: 79 ALLNQTTDVINYWQED 94
>gi|75910070|ref|YP_324366.1| hypothetical protein Ava_3866 [Anabaena variabilis ATCC 29413]
gi|123608509|sp|Q3M6B5.1|RRP3_ANAVT RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|75703795|gb|ABA23471.1| ribosomal protein PSRP-3/Ycf65 [Anabaena variabilis ATCC 29413]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|27923871|sp|Q8YSC1.2|RRP3_ANASP RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|282896618|ref|ZP_06304633.1| ribosomal protein PSRP-3/Ycf65 [Raphidiopsis brookii D9]
gi|281198488|gb|EFA73374.1| ribosomal protein PSRP-3/Ycf65 [Raphidiopsis brookii D9]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W++ N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDDNVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISNPDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGKN 80
>gi|428206812|ref|YP_007091165.1| ribosomal protein PSRP-3/Ycf65 [Chroococcidiopsis thermalis PCC
7203]
gi|428008733|gb|AFY87296.1| ribosomal protein PSRP-3/Ycf65 [Chroococcidiopsis thermalis PCC
7203]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E+N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI+++ +
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKSWITEQERV 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN++T++IN WQ+ G
Sbjct: 62 ELLNKSTEVINYWQEEG 78
>gi|427732246|ref|YP_007078483.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Nostoc sp. PCC 7524]
gi|427368165|gb|AFY50886.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Nostoc sp. PCC 7524]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WIS +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDIDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|334117129|ref|ZP_08491221.1| 30S ribosomal protein 3 [Microcoleus vaginatus FGP-2]
gi|333461949|gb|EGK90554.1| 30S ribosomal protein 3 [Microcoleus vaginatus FGP-2]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E+N+ LA+DQ + G GT PL+ YFFWPRKDAWE+LK LE+K WI+ +
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRKDAWEDLKNELEAKHWIADNDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
+LNQAT++IN WQ+ G
Sbjct: 62 EILNQATEVINYWQEEG 78
>gi|300867948|ref|ZP_07112588.1| putative 30S ribosomal protein PSRP-3 [Oscillatoria sp. PCC 6506]
gi|300334085|emb|CBN57766.1| putative 30S ribosomal protein PSRP-3 [Oscillatoria sp. PCC 6506]
Length = 108
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E+N+ LA+DQ + G GT PL+ YFFWPRKDAWEELK LE+K WI+ +
Sbjct: 12 KFILKVLWLEENVALAVDQVV-GKGTSPLTAYFFWPRKDAWEELKNELEAKHWIADNDRV 70
Query: 152 ILLNQATDIINLWQQSG 168
+LN+AT++IN WQ+ G
Sbjct: 71 EILNKATEVINYWQEEG 87
>gi|428318975|ref|YP_007116857.1| 30S ribosomal protein 3 [Oscillatoria nigro-viridis PCC 7112]
gi|428242655|gb|AFZ08441.1| 30S ribosomal protein 3 [Oscillatoria nigro-viridis PCC 7112]
Length = 99
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E+N+ LA+DQ + G GT PL+ YFFWPRKDAWE+LK LE+K WI+ +
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRKDAWEDLKNELEAKHWIADNDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
+LNQAT++IN WQ+ G
Sbjct: 62 EILNQATEVINYWQEEG 78
>gi|443319368|ref|ZP_21048601.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 6406]
gi|442781055|gb|ELR91162.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 6406]
Length = 104
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++K++ LA+DQ + G G+ PL+ YFFWPR DAWE++KT LE K WIS + +
Sbjct: 8 RFILKVLWLDKDVALAVDQ-VVGKGSSPLTSYFFWPRNDAWEQMKTELEQKSWISDEERV 66
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT+IIN WQ+ G
Sbjct: 67 DLLNKATEIINYWQEDG 83
>gi|354564800|ref|ZP_08983976.1| 30S ribosomal protein 3 [Fischerella sp. JSC-11]
gi|353549926|gb|EHC19365.1| 30S ribosomal protein 3 [Fischerella sp. JSC-11]
Length = 99
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI++ +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITEVDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|443312788|ref|ZP_21042403.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechocystis sp. PCC 7509]
gi|442777244|gb|ELR87522.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechocystis sp. PCC 7509]
Length = 99
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ I G GT PL++YFFWPR DAWEELK+ +E+K WI+++ +
Sbjct: 3 KFILKVLWLDENVALAVDQ-IVGKGTSPLTRYFFWPRNDAWEELKSEMEAKHWIAEQDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
+LNQAT++IN WQ+ G
Sbjct: 62 SVLNQATEVINYWQEEG 78
>gi|428310962|ref|YP_007121939.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Microcoleus sp. PCC 7113]
gi|428252574|gb|AFZ18533.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Microcoleus sp. PCC 7113]
Length = 99
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E+N+ LA+DQ + G GT PL+ YFFWPR DAWE+LK LE+K WIS+ I
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRNDAWEQLKNELEAKHWISESDRI 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 62 DLLNKATEVINYWQEEG 78
>gi|119485215|ref|ZP_01619600.1| hypothetical protein L8106_07194 [Lyngbya sp. PCC 8106]
gi|119457443|gb|EAW38568.1| hypothetical protein L8106_07194 [Lyngbya sp. PCC 8106]
Length = 105
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
++ + R VLK +W++ N+ LA+DQ I G G+ PL+ YFFWPR DAWE+LKT +ESK WIS
Sbjct: 4 EVSQDRFVLKVLWLDDNVALAVDQ-IVGKGSSPLTSYFFWPRNDAWEQLKTEMESKRWIS 62
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ LLN+AT++IN WQ+ G
Sbjct: 63 DIERVELLNKATEVINYWQEEG 84
>gi|298490925|ref|YP_003721102.1| ribosomal protein PSRP-3/Ycf65 ['Nostoc azollae' 0708]
gi|440680241|ref|YP_007155036.1| 30S ribosomal protein 3 [Anabaena cylindrica PCC 7122]
gi|298232843|gb|ADI63979.1| ribosomal protein PSRP-3/Ycf65 ['Nostoc azollae' 0708]
gi|428677360|gb|AFZ56126.1| 30S ribosomal protein 3 [Anabaena cylindrica PCC 7122]
Length = 99
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDVDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|209525493|ref|ZP_03274032.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira maxima CS-328]
gi|376001997|ref|ZP_09779848.1| putative 30S ribosomal protein PSRP-3 [Arthrospira sp. PCC 8005]
gi|409992960|ref|ZP_11276122.1| hypothetical protein APPUASWS_17715 [Arthrospira platensis str.
Paraca]
gi|423062096|ref|ZP_17050886.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira platensis C1]
gi|209493992|gb|EDZ94308.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira maxima CS-328]
gi|291568369|dbj|BAI90641.1| Ycf65 protein [Arthrospira platensis NIES-39]
gi|375329628|emb|CCE15601.1| putative 30S ribosomal protein PSRP-3 [Arthrospira sp. PCC 8005]
gi|406716438|gb|EKD11588.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira platensis C1]
gi|409936175|gb|EKN77677.1| hypothetical protein APPUASWS_17715 [Arthrospira platensis str.
Paraca]
Length = 99
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++ N+ LA+DQ + G G+ PL+ YFFWPRKDAWEELK LESK WI+ I
Sbjct: 3 RFILKVLWLDDNVALAVDQVV-GKGSSPLTSYFFWPRKDAWEELKNELESKRWINDVERI 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|411118948|ref|ZP_11391328.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoriales cyanobacterium JSC-12]
gi|410710811|gb|EKQ68318.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoriales cyanobacterium JSC-12]
Length = 99
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P+ +LK +W+EK++ LA+DQ + G GT PL+ YFFWPR DAWE+LK LE+K WI++
Sbjct: 2 PKFILKVLWLEKDVALAVDQVV-GKGTSPLTSYFFWPRNDAWEQLKNELEAKHWITEVDR 60
Query: 151 IILLNQATDIINLWQQSGGN 170
+ LLN+AT++IN WQ+ G +
Sbjct: 61 VELLNKATEVINYWQEEGKD 80
>gi|434406356|ref|YP_007149241.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cylindrospermum stagnale PCC 7417]
gi|428260611|gb|AFZ26561.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cylindrospermum stagnale PCC 7417]
Length = 99
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|443477346|ref|ZP_21067200.1| 30S ribosomal protein 3 [Pseudanabaena biceps PCC 7429]
gi|443017542|gb|ELS31959.1| 30S ribosomal protein 3 [Pseudanabaena biceps PCC 7429]
Length = 99
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E N+ LA+DQ + G G PL++YFFWPR DAW++LK+ +ESKPWI+ + I
Sbjct: 3 QFILKILWLENNVALAVDQVV-GKGFSPLTKYFFWPRDDAWDQLKSEMESKPWIADQDRI 61
Query: 152 ILLNQATDIINLWQQSGGN 170
+LN+AT++IN WQQ G N
Sbjct: 62 EILNKATEVINYWQQEGKN 80
>gi|186684530|ref|YP_001867726.1| hypothetical protein Npun_F4413 [Nostoc punctiforme PCC 73102]
gi|226705384|sp|B2IUK8.1|RRP3_NOSP7 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|186466982|gb|ACC82783.1| ribosomal protein PSRP-3/Ycf65 [Nostoc punctiforme PCC 73102]
Length = 99
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ I G GT PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 KFILKILWLDENVALAVDQ-IVGKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|428215432|ref|YP_007088576.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoria acuminata PCC 6304]
gi|428003813|gb|AFY84656.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoria acuminata PCC 6304]
Length = 99
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+E N+ +A+DQ + G GT PL++YFFWPR DAWEELK LE+K WIS+ +
Sbjct: 3 KFILKVLWLEDNVAIAVDQVV-GKGTSPLTRYFFWPRNDAWEELKNELEAKHWISETDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|427418325|ref|ZP_18908508.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 7375]
gi|425761038|gb|EKV01891.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 7375]
Length = 99
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++K++ LA+DQ + G G+ PL+ YFFWPR DAW+++K LESK WI+++ I
Sbjct: 3 RFILKVLWLDKDVALAVDQ-VVGKGSSPLTSYFFWPRNDAWDQMKIELESKTWIAEEERI 61
Query: 152 ILLNQATDIINLWQQSG 168
LLNQAT+IIN WQ+ G
Sbjct: 62 DLLNQATEIINYWQEGG 78
>gi|149072103|ref|YP_001293487.1| ORF99 [Rhodomonas salina]
gi|134303054|gb|ABO70858.1| ORF99 [Rhodomonas salina]
Length = 99
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P+ LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE++K LE+KPWIS++
Sbjct: 2 PKFTLKVLWLDNNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQIKAELEAKPWISEREK 60
Query: 151 IILLNQATDIINLWQQSG 168
+ +LN++T+IIN WQ+ G
Sbjct: 61 VEILNKSTEIINYWQEQG 78
>gi|427717914|ref|YP_007065908.1| 30S ribosomal protein 3 [Calothrix sp. PCC 7507]
gi|427350350|gb|AFY33074.1| 30S ribosomal protein 3 [Calothrix sp. PCC 7507]
Length = 99
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKNWITDLDRV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+AT++IN WQ+ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|78184079|ref|YP_376514.1| hypothetical protein Syncc9902_0502 [Synechococcus sp. CC9902]
gi|78168373|gb|ABB25470.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 184
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 83 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLKTELEGKSWIT 141
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LNQAT++IN WQ+ G
Sbjct: 142 DNERVEVLNQATEVINYWQEEG 163
>gi|427711323|ref|YP_007059947.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 6312]
gi|427375452|gb|AFY59404.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 6312]
Length = 99
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+EKN+ +A+DQ + G GT PL+ YFFWPR DAWE LKT +E K WI++ I
Sbjct: 3 KYILKVLWLEKNVAIAVDQVV-GKGTSPLTSYFFWPRSDAWELLKTEIEGKSWITEAERI 61
Query: 152 ILLNQATDIINLWQQSGGN 170
+LN+AT+IIN WQ+ G N
Sbjct: 62 EILNRATEIINYWQEEGNN 80
>gi|78213688|ref|YP_382467.1| hypothetical protein Syncc9605_2173 [Synechococcus sp. CC9605]
gi|78198147|gb|ABB35912.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 171
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 70 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWESLKTELEGKSWIT 128
Query: 147 QKMMIILLNQATDIINLWQQSG 168
I +LNQAT++IN WQ+ G
Sbjct: 129 DNERIEVLNQATEVINYWQEEG 150
>gi|428776561|ref|YP_007168348.1| ribosomal protein PSRP-3/Ycf65 [Halothece sp. PCC 7418]
gi|428690840|gb|AFZ44134.1| ribosomal protein PSRP-3/Ycf65 [Halothece sp. PCC 7418]
Length = 107
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+ R +LK +W+++N+ +A+D + G GT PL+ YFFWPR DAWE+LK LESK WI+++
Sbjct: 9 ESRFILKVLWLDENVAVAVDHVV-GKGTSPLTAYFFWPRNDAWEQLKEELESKSWITEEE 67
Query: 150 MIILLNQATDIINLWQQS 167
I LLNQAT++IN WQ++
Sbjct: 68 KIDLLNQATEVINYWQEN 85
>gi|260435464|ref|ZP_05789434.1| ribosomal protein [Synechococcus sp. WH 8109]
gi|260413338|gb|EEX06634.1| ribosomal protein [Synechococcus sp. WH 8109]
Length = 171
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 70 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWESLKTELEGKSWIT 128
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LNQAT++IN WQ+ G
Sbjct: 129 DNERVEVLNQATEVINYWQEEG 150
>gi|170077374|ref|YP_001734012.1| hypothetical protein SYNPCC7002_A0751 [Synechococcus sp. PCC 7002]
gi|169885043|gb|ACA98756.1| probable 30S ribosomal protein PSRP-3 [Synechococcus sp. PCC 7002]
Length = 100
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++K++ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WIS+ I
Sbjct: 4 RFLLKVLWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWISEAERI 62
Query: 152 ILLNQATDIINLWQQSG 168
+LNQAT++IN WQ+ G
Sbjct: 63 EVLNQATEVINYWQEHG 79
>gi|428299669|ref|YP_007137975.1| 30S ribosomal protein 3 [Calothrix sp. PCC 6303]
gi|428236213|gb|AFZ02003.1| 30S ribosomal protein 3 [Calothrix sp. PCC 6303]
Length = 114
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEE+K LESK WI+ +
Sbjct: 18 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEEMKKELESKHWITDVDRV 76
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+ T++IN WQ+ G N
Sbjct: 77 ELLNKGTEVINYWQEEGRN 95
>gi|148242962|ref|YP_001228119.1| hypothetical protein SynRCC307_1863 [Synechococcus sp. RCC307]
gi|147851272|emb|CAK28766.1| Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)
[Synechococcus sp. RCC307]
Length = 158
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ +N+ LA+DQ I G G PL+ YFFWPR+DAWE LK+ LESK WI+
Sbjct: 57 KADEGRFLLKILWLPENVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKSVLESKSWIT 115
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ + +LN+AT++IN WQ+ G
Sbjct: 116 ENERVEVLNKATEVINYWQEEG 137
>gi|427725711|ref|YP_007072988.1| 30S ribosomal protein 3 [Leptolyngbya sp. PCC 7376]
gi|427357431|gb|AFY40154.1| 30S ribosomal protein 3 [Leptolyngbya sp. PCC 7376]
Length = 100
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++K++ +A+DQ + G GT PL+ YFFWPR DAW++LK +E+K WIS+ I
Sbjct: 4 RFLLKVLWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDEMEAKHWISESERI 62
Query: 152 ILLNQATDIINLWQQSG 168
+LNQAT++IN WQ++G
Sbjct: 63 DVLNQATEVINYWQENG 79
>gi|116071287|ref|ZP_01468556.1| hypothetical protein BL107_16615 [Synechococcus sp. BL107]
gi|116066692|gb|EAU72449.1| hypothetical protein BL107_16615 [Synechococcus sp. BL107]
Length = 183
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 82 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLKTELEGKSWIT 140
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LNQAT++IN WQ+ G
Sbjct: 141 DNERVEVLNQATEVINYWQEEG 162
>gi|428304677|ref|YP_007141502.1| 30S ribosomal protein 3 [Crinalium epipsammum PCC 9333]
gi|428246212|gb|AFZ11992.1| 30S ribosomal protein 3 [Crinalium epipsammum PCC 9333]
Length = 99
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAWE+LKT LESK WI+ +
Sbjct: 3 KFILKVLWLDENVAIAVDQVV-GKGTSPLTSYFFWPRNDAWEQLKTELESKHWIADVDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
+LN+AT++IN WQ+ G
Sbjct: 62 AVLNKATEVINYWQEEG 78
>gi|119512551|ref|ZP_01631629.1| hypothetical protein N9414_10912 [Nodularia spumigena CCY9414]
gi|119462812|gb|EAW43771.1| hypothetical protein N9414_10912 [Nodularia spumigena CCY9414]
Length = 99
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 QFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|428219529|ref|YP_007103994.1| 30S ribosomal protein 3 [Pseudanabaena sp. PCC 7367]
gi|427991311|gb|AFY71566.1| 30S ribosomal protein 3 [Pseudanabaena sp. PCC 7367]
Length = 95
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 94 VLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIIL 153
+LK +W+E N+ +A+DQ + G G PL++YFFWPR DAW++LKT +ESKPWIS + I +
Sbjct: 1 MLKILWLEDNVAIAVDQVV-GTGFSPLTKYFFWPRDDAWDQLKTEMESKPWISDQERIEM 59
Query: 154 LNQATDIINLWQQSG 168
LN+AT++IN WQ+ G
Sbjct: 60 LNKATEVINYWQEEG 74
>gi|414076827|ref|YP_006996145.1| 30S ribosomal protein PSRP-3/Ycf65 [Anabaena sp. 90]
gi|413970243|gb|AFW94332.1| 30S ribosomal protein PSRP-3/Ycf65 [Anabaena sp. 90]
Length = 99
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G G+ PL++YFFWPR DAWEELK LESK WI+ +
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGSSPLTKYFFWPRNDAWEELKKELESKHWITDVDRV 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|254432005|ref|ZP_05045708.1| ribosomal protein psrp-3/Ycf65 [Cyanobium sp. PCC 7001]
gi|197626458|gb|EDY39017.1| ribosomal protein psrp-3/Ycf65 [Cyanobium sp. PCC 7001]
Length = 163
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ +N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 62 KADEGRFLLKILWLPENVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKTELEGKSWIT 120
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 121 DNERVEILNKATEVINYWQEEG 142
>gi|373445164|gb|AEY70776.1| putative ribosomal protein 3 (chloroplast) [Euglena viridis]
Length = 101
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LKF+W+EK+I + LDQ I G T PL++YFFWP+KDAWEE+K LE+K WI++ I
Sbjct: 3 RFILKFLWLEKSIAVCLDQKI-GDRTTPLTEYFFWPQKDAWEEMKIFLENKAWITENESI 61
Query: 152 ILLNQATDIINLWQ 165
+LLNQ T++IN WQ
Sbjct: 62 LLLNQITEVINDWQ 75
>gi|33241042|ref|NP_875984.1| hypothetical protein Pro1593 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|46577392|sp|Q7VA74.1|RRP3_PROMA RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|33238571|gb|AAQ00637.1| Uncharacterized protein [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 126
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R +LK +W+ N+ LA+DQ I G GT PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQ-IVGGGTSPLTAYFFWPREDAWETLKTELEDKAWITDN 85
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>gi|427735970|ref|YP_007055514.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Rivularia sp. PCC 7116]
gi|427371011|gb|AFY54967.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Rivularia sp. PCC 7116]
Length = 109
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W++ N+ LA+DQ I G G PL++YFFWPR DAWEELK LESK WI + +
Sbjct: 13 KFILKILWLDDNVALAVDQ-IVGKGFSPLTKYFFWPRTDAWEELKNELESKHWIGEVERV 71
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 72 ELLNKATEVINYWQEEG 88
>gi|428781584|ref|YP_007173370.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Dactylococcopsis salina PCC 8305]
gi|428695863|gb|AFZ52013.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Dactylococcopsis salina PCC 8305]
Length = 110
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R VLK +W++ N+ +A+D + G G PL+ YFFWPR DAWE+LK LESK WI+++ I
Sbjct: 14 RFVLKVLWLDDNVAVAVDHVV-GKGNSPLTAYFFWPRNDAWEQLKEELESKTWITEEEKI 72
Query: 152 ILLNQATDIINLWQQS 167
LLNQAT++IN WQ++
Sbjct: 73 DLLNQATEVINYWQEN 88
>gi|11467621|ref|NP_050673.1| putative ribosomal protein 3 [Guillardia theta]
gi|6136628|sp|O78422.1|RRP3_GUITH RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|3602946|gb|AAC35607.1| unknown (chloroplast) [Guillardia theta]
Length = 99
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P+ LK +W++ N+ +A+DQ I G GT PL+ YFFWPR DAWE++K LESKPWI +K
Sbjct: 2 PKFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKER 60
Query: 151 IILLNQATDIINLWQQ 166
I LLN+ T++IN WQ+
Sbjct: 61 IELLNKTTELINCWQE 76
>gi|363399168|gb|AEW12984.1| putative ribosomal protein 3 [Strombomonas acuminata]
Length = 100
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R VLKF+W++K I +ALDQ I G IPL++++FWP+KDAWEE+K LE K WISQ +I
Sbjct: 3 RFVLKFLWLDKAIAVALDQKI-GERNIPLTEFYFWPQKDAWEEMKLFLEKKSWISQADVI 61
Query: 152 ILLNQATDIINLWQQSGG 169
+LNQ T++IN WQ
Sbjct: 62 AILNQVTEVINYWQDKDN 79
>gi|159904100|ref|YP_001551444.1| hypothetical protein P9211_15591 [Prochlorococcus marinus str. MIT
9211]
gi|159889276|gb|ABX09490.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 155
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 54 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKTDLEDKGWIT 112
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 113 DHERVEILNKATEVINYWQEEG 134
>gi|307107479|gb|EFN55722.1| hypothetical protein CHLNCDRAFT_31142 [Chlorella variabilis]
Length = 188
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 54/71 (76%)
Query: 95 LKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILL 154
L F+W++KNI +A+DQ P+++YFFWPRKDAWEELK +L+++ WI ++ ++LL
Sbjct: 96 LNFLWLDKNIAVAVDQVFHQGQRSPVTEYFFWPRKDAWEELKASLDARTWIGEREKVLLL 155
Query: 155 NQATDIINLWQ 165
NQ T++IN WQ
Sbjct: 156 NQCTEVINFWQ 166
>gi|87123624|ref|ZP_01079474.1| hypothetical protein RS9917_08451 [Synechococcus sp. RS9917]
gi|86168193|gb|EAQ69450.1| hypothetical protein RS9917_08451 [Synechococcus sp. RS9917]
Length = 172
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 71 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLKTELEGKSWIT 129
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 130 DNERVEVLNKATEVINYWQEEG 151
>gi|113476955|ref|YP_723016.1| hypothetical protein Tery_3451 [Trichodesmium erythraeum IMS101]
gi|123056394|sp|Q10YY1.1|RRP3_TRIEI RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|110168003|gb|ABG52543.1| ribosomal protein PSRP-3/Ycf65 [Trichodesmium erythraeum IMS101]
Length = 99
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LK LE K WIS+ +
Sbjct: 3 KFILKVVWLDDNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQLKKELEGKHWISEADRV 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT+II+ WQ+ G
Sbjct: 62 ALLNKATEIISYWQEEG 78
>gi|434386270|ref|YP_007096881.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Chamaesiphon minutus PCC 6605]
gi|428017260|gb|AFY93354.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Chamaesiphon minutus PCC 6605]
Length = 109
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 15/102 (14%)
Query: 67 TSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFW 126
T TET+P T + +LK +W+++N+ LA+DQ + G G PL+ YFFW
Sbjct: 2 TETETLPVT--------------TSKFILKVLWLDENVALAVDQVV-GKGLSPLTAYFFW 46
Query: 127 PRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 168
PR DAWE+LK LE+K WI++ + +LNQAT++IN WQ+ G
Sbjct: 47 PRNDAWEQLKAELEAKHWIAEVDRVGILNQATEVINYWQEEG 88
>gi|56751767|ref|YP_172468.1| hypothetical protein syc1758_d [Synechococcus elongatus PCC 6301]
gi|81301154|ref|YP_401362.1| hypothetical protein Synpcc7942_2345 [Synechococcus elongatus PCC
7942]
gi|6136560|sp|O05161.1|RRP3_SYNE7 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|81561751|sp|Q5N172.1|RRP3_SYNP6 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|1906544|gb|AAB50399.1| putative protein [Synechococcus elongatus PCC 7942]
gi|56686726|dbj|BAD79948.1| hypothetical protein YCF65 [Synechococcus elongatus PCC 6301]
gi|81170035|gb|ABB58375.1| conserved hypothetical protein YCF65 [Synechococcus elongatus PCC
7942]
Length = 112
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +K +W+ +N+ +A+DQ + G T PL+ Y+FWPR DAWE+LKT LESK WI++ +
Sbjct: 16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERV 74
Query: 152 ILLNQATDIINLWQQSG 168
LLNQAT++IN WQ+ G
Sbjct: 75 ELLNQATEVINYWQEEG 91
>gi|33865046|ref|NP_896605.1| hypothetical protein SYNW0510 [Synechococcus sp. WH 8102]
gi|33638730|emb|CAE07025.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 178
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 77 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLKTELEGKSWIT 135
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LNQ T++IN WQ+ G
Sbjct: 136 DNERVDVLNQTTEVINYWQEEG 157
>gi|158336062|ref|YP_001517236.1| hypothetical protein AM1_2922 [Acaryochloris marina MBIC11017]
gi|359462658|ref|ZP_09251221.1| hypothetical protein ACCM5_28261 [Acaryochloris sp. CCMEE 5410]
gi|189040357|sp|B0CBD5.1|RRP3_ACAM1 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|158306303|gb|ABW27920.1| 30S ribosomal protein Ycf65 [Acaryochloris marina MBIC11017]
Length = 99
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ + G G+ PL+ YFFWPR DAWE LKT LE K WI + I
Sbjct: 3 KFILKVLWLDENVALAVDQVV-GNGSSPLTSYFFWPRNDAWENLKTELEKKTWIDEVERI 61
Query: 152 ILLNQATDIINLWQQSG 168
+LN+AT++IN WQ+ G
Sbjct: 62 SILNKATEVINYWQEEG 78
>gi|87301239|ref|ZP_01084080.1| hypothetical protein WH5701_15176 [Synechococcus sp. WH 5701]
gi|87284207|gb|EAQ76160.1| hypothetical protein WH5701_15176 [Synechococcus sp. WH 5701]
Length = 164
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE+K WI+
Sbjct: 63 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEAKSWIT 121
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 122 DNERVEILNKATEVINYWQEEG 143
>gi|332707646|ref|ZP_08427674.1| ribosomal protein PSRP-3/Ycf65 [Moorea producens 3L]
gi|332353555|gb|EGJ33067.1| ribosomal protein PSRP-3/Ycf65 [Moorea producens 3L]
Length = 99
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ LA+DQ I G GT PL+ YFFWPR DAWE+LK +E+K WI++ I
Sbjct: 3 KFLLKVLWLDENVALAVDQ-IVGKGTSPLTCYFFWPRNDAWEQLKDEMEAKHWITEADRI 61
Query: 152 ILLNQATDIINLWQQSG 168
+LN+AT++IN WQ+ G
Sbjct: 62 EILNKATEVINYWQEEG 78
>gi|172036668|ref|YP_001803169.1| hypothetical protein cce_1753 [Cyanothece sp. ATCC 51142]
gi|254809568|sp|B1WYT6.1|RRP3_CYAA5 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|171698122|gb|ACB51103.1| putative plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Cyanothece sp. ATCC 51142]
Length = 112
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 83 VSVKQLE---KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTL 139
+S QLE +PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW+ELK L
Sbjct: 1 MSFIQLEGQLEPRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDEL 59
Query: 140 ESKPWISQKMMIILLNQATDIINLWQ 165
E+K WI + I +LN+AT++IN WQ
Sbjct: 60 EAKHWILETERIEILNKATEVINYWQ 85
>gi|428769715|ref|YP_007161505.1| 30S ribosomal protein 3 [Cyanobacterium aponinum PCC 10605]
gi|428683994|gb|AFZ53461.1| 30S ribosomal protein 3 [Cyanobacterium aponinum PCC 10605]
Length = 112
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R VLK +W++KN+ LA+D I G PL+ Y+FWPR DAW+ELK L++K WI++ I
Sbjct: 16 RFVLKVVWLDKNVALAVDYVISK-GISPLTPYYFWPRTDAWQELKDELDTKTWITETEKI 74
Query: 152 ILLNQATDIINLWQQSGGNLT 172
LLNQAT++IN WQ++ G T
Sbjct: 75 ELLNQATEVINFWQENAGKTT 95
>gi|224178106|ref|YP_002600912.1| hypothetical chloroplast RF65 [Pyramimonas parkeae]
gi|215882773|gb|ACJ71146.1| hypothetical chloroplast RF65 [Pyramimonas parkeae]
Length = 97
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ VL+ +W+EK++G+ALDQ + G T PL++YFFWPRKDAW+ELK L + W+SQ I
Sbjct: 3 KFVLRVLWLEKSLGIALDQRV-GNETEPLTEYFFWPRKDAWDELKERLNNSSWVSQTEAI 61
Query: 152 ILLNQATDIINLWQQSGGNLT 172
LLNQ TD+I WQ+ G+ +
Sbjct: 62 SLLNQTTDLIKTWQEKKGSFS 82
>gi|33861996|ref|NP_893557.1| hypothetical protein PMM1440 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640364|emb|CAE19899.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 158
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 59 DEGRFIIKILWLPDNVALAVDQ-IVGGGSSPLTAYYFWPRDDAWEKLKSELENKSWITDN 117
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 ERVEILNKATEVINYWQEEG 137
>gi|318042260|ref|ZP_07974216.1| hypothetical protein SCB01_11152 [Synechococcus sp. CB0101]
Length = 159
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R ++K +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LKT LE K WI+
Sbjct: 58 KADEGRFLVKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLKTELEGKSWIT 116
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 117 DNERVEILNKATEVINYWQEEG 138
>gi|27923877|sp|Q9BAC5.1|RRP3_EUGGA RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487719|gb|AAK27689.1|AF347930_1 ycf65 [Euglena granulata]
gi|77744786|gb|ABB02344.1| Ycf65 [Euglena granulata]
Length = 103
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
K L+LKF+W+EK+I + LDQ + G PL+++FFWP+KDAWEE+K LES+ WI+Q
Sbjct: 2 KKELILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSD 60
Query: 150 MIILLNQATDIINLWQQSGGNL 171
+ LLN T++IN WQ+ N+
Sbjct: 61 SVNLLNNITEVINFWQERDTNV 82
>gi|354554482|ref|ZP_08973786.1| 30S ribosomal protein 3 [Cyanothece sp. ATCC 51472]
gi|353553291|gb|EHC22683.1| 30S ribosomal protein 3 [Cyanothece sp. ATCC 51472]
Length = 103
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW+ELK LE+K WI +
Sbjct: 2 EPRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETE 60
Query: 150 MIILLNQATDIINLWQQ 166
I +LN+AT++IN WQ
Sbjct: 61 RIEILNKATEVINYWQD 77
>gi|428222621|ref|YP_007106791.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 7502]
gi|427995961|gb|AFY74656.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 7502]
Length = 99
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+EK++ LA+DQ + G G PL++Y+FWPR +AWE+L+T +ESK WI+ + I
Sbjct: 3 QFILKVLWLEKDVALAVDQVV-GKGNSPLTKYYFWPRDNAWEQLQTEMESKSWITDQERI 61
Query: 152 ILLNQATDIINLWQQSG 168
LLN+AT++IN WQ+ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|443325739|ref|ZP_21054420.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Xenococcus sp. PCC 7305]
gi|442794663|gb|ELS04069.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Xenococcus sp. PCC 7305]
Length = 102
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ LK +W++K++ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WIS++ I
Sbjct: 6 KFTLKILWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKEELEAKHWISEEDRI 64
Query: 152 ILLNQATDIINLWQQSG 168
+LN+AT++IN WQ+ G
Sbjct: 65 GVLNKATEVINFWQEYG 81
>gi|352095877|ref|ZP_08956824.1| 30S ribosomal protein 3 [Synechococcus sp. WH 8016]
gi|351677233|gb|EHA60382.1| 30S ribosomal protein 3 [Synechococcus sp. WH 8016]
Length = 186
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK+ LE K WI+
Sbjct: 85 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKSELEGKSWIT 143
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 144 DNERVEVLNKATEVINYWQEEG 165
>gi|88807396|ref|ZP_01122908.1| hypothetical protein WH7805_12633 [Synechococcus sp. WH 7805]
gi|88788610|gb|EAR19765.1| hypothetical protein WH7805_12633 [Synechococcus sp. WH 7805]
Length = 167
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE+K WI+
Sbjct: 66 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLKGELEAKSWIT 124
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 125 DNERVEVLNKATEVINYWQEEG 146
>gi|302844241|ref|XP_002953661.1| hypothetical protein VOLCADRAFT_82361 [Volvox carteri f.
nagariensis]
gi|300261070|gb|EFJ45285.1| hypothetical protein VOLCADRAFT_82361 [Volvox carteri f.
nagariensis]
Length = 332
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P L +W EKN+ +A+DQ PL++Y+FWPR+DAWEEL+ LE +PWIS++
Sbjct: 235 PEFRLNVLWTEKNLAVAIDQVYSRGQVSPLTEYYFWPRQDAWEELRVNLEMRPWISERDR 294
Query: 151 IILLNQATDIINLWQQ 166
IILLN+ T +IN WQ
Sbjct: 295 IILLNRLTQLINFWQD 310
>gi|16331676|ref|NP_442404.1| hypothetical protein slr0923 [Synechocystis sp. PCC 6803]
gi|383323418|ref|YP_005384272.1| hypothetical protein SYNGTI_2510 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326587|ref|YP_005387441.1| hypothetical protein SYNPCCP_2509 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492471|ref|YP_005410148.1| hypothetical protein SYNPCCN_2509 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437739|ref|YP_005652464.1| hypothetical protein SYNGTS_2511 [Synechocystis sp. PCC 6803]
gi|451815828|ref|YP_007452280.1| hypothetical protein MYO_125360 [Synechocystis sp. PCC 6803]
gi|6136561|sp|Q55385.1|RRP3_SYNY3 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|1001233|dbj|BAA10474.1| slr0923 [Synechocystis sp. PCC 6803]
gi|339274772|dbj|BAK51259.1| hypothetical protein SYNGTS_2511 [Synechocystis sp. PCC 6803]
gi|359272738|dbj|BAL30257.1| hypothetical protein SYNGTI_2510 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275908|dbj|BAL33426.1| hypothetical protein SYNPCCN_2509 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359279078|dbj|BAL36595.1| hypothetical protein SYNPCCP_2509 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407960690|dbj|BAM53930.1| hypothetical protein BEST7613_4999 [Bacillus subtilis BEST7613]
gi|451781797|gb|AGF52766.1| hypothetical protein MYO_125360 [Synechocystis sp. PCC 6803]
Length = 112
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 93 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 152
+LK +W+++N+ +A+DQ I G GT PL+ YFFWPR DAW++LK LE+K WI++ I
Sbjct: 14 FILKVLWLDQNVAIAVDQ-IVGKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 72
Query: 153 LLNQATDIINLWQ 165
+LNQAT++IN WQ
Sbjct: 73 VLNQATEVINFWQ 85
>gi|72382810|ref|YP_292165.1| hypothetical protein PMN2A_0972 [Prochlorococcus marinus str.
NATL2A]
gi|72002660|gb|AAZ58462.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
Length = 166
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK+ LE K WI+
Sbjct: 65 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKSQLEEKSWIT 123
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 124 DNERVEVLNKATEVINYWQEEG 145
>gi|27923874|sp|Q9BAC0.1|RRP3_EUGST RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487727|gb|AAK27694.1|AF347933_1 ycf65 [Euglena stellata]
gi|77744808|gb|ABB02363.1| Ycf65 [Euglena stellata]
Length = 101
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 93 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 152
+LKF+W+EK++ + LDQ I G T P++++FFWP+ DAWEE+K LE K WI Q ++I
Sbjct: 4 FILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVI 62
Query: 153 LLNQATDIINLWQQ 166
LLNQ T++IN WQ+
Sbjct: 63 LLNQITEVINYWQE 76
>gi|434399416|ref|YP_007133420.1| 30S ribosomal protein 3 [Stanieria cyanosphaera PCC 7437]
gi|428270513|gb|AFZ36454.1| 30S ribosomal protein 3 [Stanieria cyanosphaera PCC 7437]
Length = 100
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+ R LK +W++K++ +A+DQ + G GT PL+ YFFWPR DAW++L LE+K WI++
Sbjct: 2 ESRFTLKVLWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLHDELEAKHWIAENE 60
Query: 150 MIILLNQATDIINLWQQSG 168
I +LN+AT++IN WQ+ G
Sbjct: 61 RIEVLNKATEVINFWQEHG 79
>gi|126696968|ref|YP_001091854.1| hypothetical protein P9301_16301 [Prochlorococcus marinus str. MIT
9301]
gi|126544011|gb|ABO18253.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9301]
Length = 158
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 36 LHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKP---R 92
L QN T+ +N + P + +T + A ++ + GV KP R
Sbjct: 7 LKQNSTEKKEKNSDSLKSKNP---SPNSGMMGATAVLAAATID-EDGVPTGYTPKPDEGR 62
Query: 93 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 152
++K +W+ N+ LA+DQ I G G PL+ Y+FWPR DAWE+LK+ LE+K WI+ +
Sbjct: 63 FIIKVLWLPDNVALAVDQ-IVGGGPSPLTAYYFWPRDDAWEKLKSELENKGWITDNERVE 121
Query: 153 LLNQATDIINLWQQSG 168
+LN+AT++IN WQ+ G
Sbjct: 122 ILNKATEVINYWQEEG 137
>gi|124026545|ref|YP_001015660.1| hypothetical protein NATL1_18401 [Prochlorococcus marinus str.
NATL1A]
gi|123961613|gb|ABM76396.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL1A]
Length = 166
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK+ LE K WI+
Sbjct: 65 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKSQLEEKSWIT 123
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 124 DNERVEVLNKATEVINYWQEEG 145
>gi|116073669|ref|ZP_01470931.1| hypothetical protein RS9916_34502 [Synechococcus sp. RS9916]
gi|116068974|gb|EAU74726.1| hypothetical protein RS9916_34502 [Synechococcus sp. RS9916]
Length = 172
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE K WI+
Sbjct: 71 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEGKSWIT 129
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 130 DNERVEVLNKATEVINYWQEEG 151
>gi|159487801|ref|XP_001701911.1| plastid-specific ribosomal protein 3 [Chlamydomonas reinhardtii]
gi|158281130|gb|EDP06886.1| plastid-specific ribosomal protein 3 [Chlamydomonas reinhardtii]
Length = 298
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P L +W +KN+ +A+DQ PL++Y+FWPR+DAWEEL+ LES+PWIS++
Sbjct: 201 PEYRLNVLWTDKNLAVAIDQVYSRGQVSPLTEYYFWPRQDAWEELRINLESRPWISERDR 260
Query: 151 IILLNQATDIINLWQQ 166
IILLN+ T +IN WQ
Sbjct: 261 IILLNRLTQLINFWQD 276
>gi|148240338|ref|YP_001225725.1| hypothetical protein SynWH7803_2002 [Synechococcus sp. WH 7803]
gi|147848877|emb|CAK24428.1| Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)
[Synechococcus sp. WH 7803]
Length = 167
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK+ LE K WI+
Sbjct: 66 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKSELEGKSWIT 124
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 125 DNERVEVLNKATEVINYWQEEG 146
>gi|123969174|ref|YP_001010032.1| hypothetical protein A9601_16421 [Prochlorococcus marinus str.
AS9601]
gi|123199284|gb|ABM70925.1| conserved hypothetical protein [Prochlorococcus marinus str.
AS9601]
Length = 158
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 8/141 (5%)
Query: 31 TKTTILHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEK 90
T + L+QN T+ +N + ++ + +T + A ++ + GV K
Sbjct: 2 TSSDKLNQNSTEKKEKNSDV---PNSKNSSPNSGMMGATAVLAAAKID-EDGVPTGYTPK 57
Query: 91 P---RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQ 147
P R ++K +W+ N+ LA+DQ I G G PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 58 PDEGRFIIKVLWLPDNVALAVDQ-IVGGGPSPLTAYYFWPRDDAWEKLKSELENKGWITD 116
Query: 148 KMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 117 NERVEILNKATEVINYWQEEG 137
>gi|51209883|ref|YP_063547.1| putative ribosomal protein 3 [Gracilaria tenuistipitata var. liui]
gi|68053126|sp|Q6B913.1|RRP3_GRATL RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|50657637|gb|AAT79622.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
Length = 99
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ K +W+E NI +A+D +I G PL+ YFFWPR DAWEELK LESKPWI++ +
Sbjct: 3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKV 61
Query: 152 ILLNQATDIINLWQQSGGN 170
LLN+ T+IIN WQ+ N
Sbjct: 62 DLLNKTTEIINFWQEKEKN 80
>gi|288965289|pdb|2KT9|A Chain A, Solution Nmr Structure Of Probable 30s Ribosomal Protein
Psrp-3 (Ycf65-Like Protein) From Synechocystis Sp.
(Strain Pcc 6803), Northeast Structural Genomics
Consortium Target Target Sgr46
Length = 116
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 93 LVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMII 152
+LK +W+++N+ +A+DQ I G GT PL+ YFFWPR DAW++LK LE+K WI++ I
Sbjct: 10 FILKVLWLDQNVAIAVDQ-IVGKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 68
Query: 153 LLNQATDIINLWQ 165
+LNQAT++IN WQ
Sbjct: 69 VLNQATEVINFWQ 81
>gi|157414041|ref|YP_001484907.1| hypothetical protein P9215_17081 [Prochlorococcus marinus str. MIT
9215]
gi|157388616|gb|ABV51321.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9215]
Length = 158
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 59 DEGRFIIKVLWLPDNVALAVDQ-IVGGGPSPLTAYYFWPRDDAWEKLKSELENKGWITDN 117
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 ERVEILNKATEVINYWQEEG 137
>gi|254527056|ref|ZP_05139108.1| ribosomal protein psrp-3/Ycf65 [Prochlorococcus marinus str. MIT
9202]
gi|221538480|gb|EEE40933.1| ribosomal protein psrp-3/Ycf65 [Prochlorococcus marinus str. MIT
9202]
Length = 158
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 59 DEGRFIIKVLWLPDNVALAVDQ-IVGGGPSPLTAYYFWPRDDAWEKLKSELENKGWITDN 117
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 ERVEILNKATEVINYWQEEG 137
>gi|91070182|gb|ABE11103.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-11D6]
Length = 158
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 59 DEGRFIIKVLWLPDNVALAVDQ-IVGGGPSPLTAYYFWPRDDAWEKLKSELENKGWITDN 117
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 ERVEILNKATEVINYWQEEG 137
>gi|86605051|ref|YP_473814.1| hypothetical protein CYA_0331 [Synechococcus sp. JA-3-3Ab]
gi|123507800|sp|Q2JXD5.1|RRP3_SYNJA RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|86553593|gb|ABC98551.1| Ycf65-like protein [Synechococcus sp. JA-3-3Ab]
Length = 99
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P+ LK +W+E ++ +A+DQ + + PL++YFFWPR DAWE+LK LESK WIS++
Sbjct: 2 PKFALKALWLENDLAIAVDQVVAKNRS-PLTRYFFWPRDDAWEQLKAELESKTWISEEDR 60
Query: 151 IILLNQATDIINLWQQSG 168
I LLNQAT++IN WQ G
Sbjct: 61 ITLLNQATELINYWQNGG 78
>gi|33863721|ref|NP_895281.1| hypothetical protein PMT1454 [Prochlorococcus marinus str. MIT
9313]
gi|33635304|emb|CAE21629.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 174
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE K WI+
Sbjct: 73 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEGKSWIT 131
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 132 DNERVEVLNKATEVINYWQEEG 153
>gi|284929223|ref|YP_003421745.1| 30S ribosomal protein PSRP-3 [cyanobacterium UCYN-A]
gi|284809667|gb|ADB95364.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[cyanobacterium UCYN-A]
Length = 103
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+PR +LK +W++ N+ +A+DQ I G GT PL+ YFFWPR +AW+ELK LE+K WI +
Sbjct: 2 EPRFILKVLWLDANVAIAVDQ-IVGKGTSPLTAYFFWPRNNAWQELKNELEAKHWILETE 60
Query: 150 MIILLNQATDIINLWQQ 166
I +LN+AT++IN WQ
Sbjct: 61 RIEVLNKATEVINYWQD 77
>gi|317968996|ref|ZP_07970386.1| hypothetical protein SCB02_05633 [Synechococcus sp. CB0205]
Length = 158
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R ++K +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE L+T LE K WI+
Sbjct: 57 KADEGRFLVKILWLPDNVALAVDQ-IVGGGPSPLTSYFFWPREDAWETLRTELEGKSWIT 115
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 116 DNERVEVLNKATEVINYWQEEG 137
>gi|46577386|sp|Q7V048.2|RRP3_PROMP RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
Length = 126
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 27 DEGRFIIKILWLPDNVALAVDQ-IVGGGSSPLTAYYFWPRDDAWEKLKSELENKSWITDN 85
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 86 ERVEILNKATEVINYWQEEG 105
>gi|123966852|ref|YP_001011933.1| hypothetical protein P9515_16191 [Prochlorococcus marinus str. MIT
9515]
gi|123201218|gb|ABM72826.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9515]
Length = 158
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G PL+ Y+FWPR DAWE+LK+ LE+K WI+
Sbjct: 59 DEGRFIIKILWLPDNVALAVDQ-IVGGGPSPLTAYYFWPRDDAWEKLKSELENKSWITDN 117
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 ERVEILNKATEVINYWQEEG 137
>gi|194476693|ref|YP_002048872.1| hypothetical protein PCC_0212 [Paulinella chromatophora]
gi|171191700|gb|ACB42662.1| hypothetical protein PCC_0212 [Paulinella chromatophora]
Length = 171
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 4/104 (3%)
Query: 65 TTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYF 124
T +T TI A + +G + K E R +LK +W+ +N+ LA+DQ I G G PL+ YF
Sbjct: 51 TALATATIDADGI--PSGYTPKADEG-RFMLKILWLPENVALAVDQ-IVGGGPSPLTAYF 106
Query: 125 FWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 168
FWPR+DAWE LK LE+K WI+ I +LN+AT++IN WQ G
Sbjct: 107 FWPREDAWEILKNELEAKSWITDNERIEILNKATEVINYWQGDG 150
>gi|113953547|ref|YP_731483.1| hypothetical protein sync_2286 [Synechococcus sp. CC9311]
gi|113880898|gb|ABI45856.1| Ycf65 homolog [Synechococcus sp. CC9311]
Length = 126
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK+ LE K WI+
Sbjct: 25 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKSELEGKSWIT 83
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 84 DNERVEVLNKATEVINYWQEEG 105
>gi|126658602|ref|ZP_01729748.1| hypothetical protein CY0110_30061 [Cyanothece sp. CCY0110]
gi|126620039|gb|EAZ90762.1| hypothetical protein CY0110_30061 [Cyanothece sp. CCY0110]
Length = 103
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WI +
Sbjct: 2 EPRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKEELEAKHWILEAE 60
Query: 150 MIILLNQATDIINLWQ 165
I +LN+AT++IN WQ
Sbjct: 61 RIEVLNKATEVINYWQ 76
>gi|443322603|ref|ZP_21051622.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Gloeocapsa sp. PCC 73106]
gi|442787652|gb|ELR97366.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Gloeocapsa sp. PCC 73106]
Length = 99
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++K++ LA+DQ I G G PL+ YFFWPR DAW++LK L+SK WI++ +
Sbjct: 3 RFILKVLWLDKDVALAIDQ-IVGKGFSPLTAYFFWPRNDAWQQLKDELDSKSWIAENEKV 61
Query: 152 ILLNQATDIINLWQQSG 168
+LN+ T++IN WQ+ G
Sbjct: 62 EILNKVTEVINFWQEYG 78
>gi|67925085|ref|ZP_00518462.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 8501]
gi|67853059|gb|EAM48441.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 8501]
Length = 103
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WI +
Sbjct: 2 EPRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWILEPE 60
Query: 150 MIILLNQATDIINLWQQ 166
I +LN+AT++IN WQ
Sbjct: 61 RIDVLNKATEVINYWQD 77
>gi|427704364|ref|YP_007047586.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cyanobium gracile PCC 6307]
gi|427347532|gb|AFY30245.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cyanobium gracile PCC 6307]
Length = 160
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R ++K +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE+K WI+
Sbjct: 59 KADEGRFLVKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEAKSWIT 117
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 DNERVEILNKATEVINYWQEEG 139
>gi|428774177|ref|YP_007165965.1| ribosomal protein PSRP-3/Ycf65 [Cyanobacterium stanieri PCC 7202]
gi|428688456|gb|AFZ48316.1| ribosomal protein PSRP-3/Ycf65 [Cyanobacterium stanieri PCC 7202]
Length = 111
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R VLK +W++K++ LA+D I GT PL+ Y+FWPR DAW++LK L+ K WI+ I
Sbjct: 15 RFVLKVVWLDKDVALAVDYVISK-GTSPLTPYYFWPRSDAWQDLKDELDKKNWITDTEKI 73
Query: 152 ILLNQATDIINLWQQSG 168
LLNQAT+IIN WQ+ G
Sbjct: 74 ELLNQATEIINFWQEKG 90
>gi|307153841|ref|YP_003889225.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7822]
gi|306984069|gb|ADN15950.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7822]
Length = 103
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++ N+ +A+D + G GT PL+ YFFWPR DAW++LK LE+K WIS+ I
Sbjct: 4 RFILKVLWLDANVAIAVDHVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWISENERI 62
Query: 152 ILLNQATDIINLWQQ 166
+LN+AT++IN WQ
Sbjct: 63 DVLNKATEVINFWQD 77
>gi|218441978|ref|YP_002380307.1| hypothetical protein PCC7424_5088 [Cyanothece sp. PCC 7424]
gi|218174706|gb|ACK73439.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7424]
Length = 103
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++ N+ +A+D + G GT PL+ YFFWPR DAW++LK LE+K WIS+ I
Sbjct: 4 RFILKVLWLDANVAIAVDHVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWISENDRI 62
Query: 152 ILLNQATDIINLWQQ 166
+LN+AT++IN WQ
Sbjct: 63 EVLNKATEVINFWQD 77
>gi|46577391|sp|Q7V5U0.2|RRP3_PROMM RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
Length = 126
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE K WI+
Sbjct: 25 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEGKSWIT 83
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 84 DNERVEVLNKATEVINYWQEEG 105
>gi|124022209|ref|YP_001016516.1| hypothetical protein P9303_04991 [Prochlorococcus marinus str. MIT
9303]
gi|123962495|gb|ABM77251.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9303]
Length = 149
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 87 QLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWIS 146
+ ++ R +LK +W+ N+ LA+DQ I G G PL+ YFFWPR+DAWE LK LE K WI+
Sbjct: 48 KADEGRFLLKILWLPDNVALAVDQ-IVGGGPSPLTAYFFWPREDAWETLKGELEGKSWIT 106
Query: 147 QKMMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 107 DNERVEVLNKATEVINYWQEEG 128
>gi|428200763|ref|YP_007079352.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Pleurocapsa sp. PCC 7327]
gi|427978195|gb|AFY75795.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Pleurocapsa sp. PCC 7327]
Length = 103
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+ R +LK +W+++N+ +A+DQ + G GT PL+ Y+FWPR DAW++LK LE+K WI++
Sbjct: 2 ESRFILKVLWLDQNVAIAVDQVV-GKGTSPLTVYYFWPRNDAWQQLKEELEAKHWIAENE 60
Query: 150 MIILLNQATDIINLWQ 165
I +LN+AT++IN WQ
Sbjct: 61 RIEILNKATEVINFWQ 76
>gi|86609171|ref|YP_477933.1| hypothetical protein CYB_1711 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502100|sp|Q2JKV8.1|RRP3_SYNJB RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|86557713|gb|ABD02670.1| Ycf65-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 99
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
P+ LK +W+E ++ +A+DQ + + PL+ YFFWPR DAWE+LK LESK WIS+
Sbjct: 2 PKFALKALWLENDLAIAVDQVVAKNRS-PLTHYFFWPRDDAWEQLKAELESKTWISEVDR 60
Query: 151 IILLNQATDIINLWQQSGGN 170
I LLN+AT++IN WQ G N
Sbjct: 61 IELLNRATELINYWQNGGRN 80
>gi|32307518|gb|AAP79164.1| plastid protein ycf65 [Bigelowiella natans]
Length = 343
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 16/117 (13%)
Query: 50 LVALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRLVLKFIWMEKNIGLALD 109
VA SL E+A E + PVET G++V +W+EK+I LA+D
Sbjct: 119 FVAETGGPSLEDEQAG----EIMETAPVETSYGLNV------------LWLEKHIALAVD 162
Query: 110 QSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 166
+ PG IPL+ + WP+ DAWE++K+ +ESK WI++ I +LNQAT+IIN WQ+
Sbjct: 163 EIYPGNKRIPLTTFHLWPQTDAWEDIKSIMESKSWIAEASTINVLNQATEIINFWQE 219
>gi|218248402|ref|YP_002373773.1| hypothetical protein PCC8801_3655 [Cyanothece sp. PCC 8801]
gi|257061468|ref|YP_003139356.1| hypothetical protein Cyan8802_3709 [Cyanothece sp. PCC 8802]
gi|218168880|gb|ACK67617.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 8801]
gi|256591634|gb|ACV02521.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 8802]
Length = 120
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LK +W++ N+ +A+D + G G PL+ YFFWPR DAW++LK LE+K WIS+ I
Sbjct: 21 RFLLKVLWLDANVAIAVDHLV-GKGNSPLTAYFFWPRNDAWQQLKDELEAKHWISEGERI 79
Query: 152 ILLNQATDIINLWQ 165
+LNQAT++IN WQ
Sbjct: 80 EILNQATEVINYWQ 93
>gi|425437175|ref|ZP_18817600.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9432]
gi|425462774|ref|ZP_18842241.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9808]
gi|440754553|ref|ZP_20933755.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
TAIHU98]
gi|443662989|ref|ZP_21133035.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
DIANCHI905]
gi|159028800|emb|CAO89971.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389677894|emb|CCH93212.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9432]
gi|389824109|emb|CCI27203.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9808]
gi|440174759|gb|ELP54128.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
TAIHU98]
gi|443331993|gb|ELS46626.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
DIANCHI905]
Length = 107
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
+ + +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++L+ LE+K WI +
Sbjct: 6 ESKFILKVLWLDQNVAIAVDQ-VVGKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESD 64
Query: 150 MIILLNQATDIINLWQQ 166
+ +LN+AT++IN WQ+
Sbjct: 65 RVDVLNKATEVINFWQE 81
>gi|78779917|ref|YP_398029.1| hypothetical protein PMT9312_1533 [Prochlorococcus marinus str. MIT
9312]
gi|78713416|gb|ABB50593.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 158
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQK 148
++ R ++K +W+ N+ LA+DQ I G G PL+ Y FWPR DAWE+LK+ LE+K WI+
Sbjct: 59 DEGRFIIKVLWLPDNVALAVDQ-IVGGGPSPLTAYNFWPRDDAWEKLKSELENKGWITDN 117
Query: 149 MMIILLNQATDIINLWQQSG 168
+ +LN+AT++IN WQ+ G
Sbjct: 118 ERVEILNKATEVINYWQEEG 137
>gi|425444693|ref|ZP_18824739.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9443]
gi|425454411|ref|ZP_18834151.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9807]
gi|389735504|emb|CCI00998.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9443]
gi|389804936|emb|CCI15663.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9807]
Length = 107
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++L+ LE+K WI + +
Sbjct: 8 KFILKVLWLDQNVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESDRV 66
Query: 152 ILLNQATDIINLWQQ 166
+LN+AT++IN WQ+
Sbjct: 67 DVLNKATEVINFWQE 81
>gi|166362835|ref|YP_001655108.1| hypothetical protein MAE_00940 [Microcystis aeruginosa NIES-843]
gi|390440418|ref|ZP_10228747.1| putative 30S ribosomal protein PSRP-3 [Microcystis sp. T1-4]
gi|422302789|ref|ZP_16390148.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9806]
gi|425441141|ref|ZP_18821427.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9717]
gi|425449331|ref|ZP_18829172.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
7941]
gi|425466069|ref|ZP_18845372.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9809]
gi|425469738|ref|ZP_18848650.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9701]
gi|166085208|dbj|BAF99915.1| hypothetical protein MAE_00940 [Microcystis aeruginosa NIES-843]
gi|389718232|emb|CCH97787.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9717]
gi|389764045|emb|CCI09550.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
7941]
gi|389787945|emb|CCI16801.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9806]
gi|389831582|emb|CCI25559.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9809]
gi|389836160|emb|CCI32873.1| putative 30S ribosomal protein PSRP-3 [Microcystis sp. T1-4]
gi|389880391|emb|CCI38857.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9701]
Length = 107
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++L+ LE+K WI + +
Sbjct: 8 KFILKVLWLDQNVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESDRV 66
Query: 152 ILLNQATDIINLWQQ 166
+LN+AT++IN WQ+
Sbjct: 67 DVLNKATEVINFWQE 81
>gi|27923873|sp|Q9BAB9.1|RRP3_EUGVI RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487730|gb|AAK27696.1|AF347934_1 ycf65 [Euglena viridis]
gi|77744814|gb|ABB02368.1| Ycf65 [Euglena viridis]
Length = 101
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ VLKF+W+++++ ++LDQ I G PL++++FWP+ DAWEE++ LESK WI+ I
Sbjct: 3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESI 61
Query: 152 ILLNQATDIINLWQQSGG 169
+LLNQ T+IIN WQ+
Sbjct: 62 LLLNQVTEIINDWQEKDD 79
>gi|353441294|gb|AEQ94252.1| hypothetical protein (chloroplast) [Eutreptia viridis]
Length = 100
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ LKF+W++K++ ALD+ I G P+++YFFWPR DAWEELK LE K WI I
Sbjct: 3 KFKLKFLWLDKSLAFALDEKI-GEKINPITEYFFWPRTDAWEELKIELEKKNWIQHSESI 61
Query: 152 ILLNQATDIINLWQQSG 168
+LNQ T+IIN W++
Sbjct: 62 EILNQTTEIINYWEEKN 78
>gi|297737841|emb|CBI27042.3| unnamed protein product [Vitis vinifera]
Length = 85
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 50/91 (54%), Gaps = 35/91 (38%)
Query: 80 KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTL 139
K V VK +E PRLVLKF+WMEKNIG
Sbjct: 28 KVEVIVKVMETPRLVLKFVWMEKNIG---------------------------------- 53
Query: 140 ESKPWISQKMMIILLNQATDIINLWQQSGGN 170
SKPWISQK MIILLN+ATDIINLWQQSGGN
Sbjct: 54 -SKPWISQKKMIILLNEATDIINLWQQSGGN 83
>gi|17230660|ref|NP_487208.1| hypothetical protein asr3168, partial [Nostoc sp. PCC 7120]
gi|17132263|dbj|BAB74867.1| asr3168 [Nostoc sp. PCC 7120]
Length = 78
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 114 GYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 170
G GT PL++YFFWPR DAWEELK LESK WIS + LLN+AT++IN WQ+ G N
Sbjct: 3 GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 59
>gi|27923876|sp|Q9BAC3.1|RRP3_EUGMU RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487722|gb|AAK27691.1|AF347931_1 ycf65 [Euglena mutabilis]
gi|77744793|gb|ABB02350.1| Ycf65 [Euglena mutabilis]
Length = 101
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R VLKF+ ++K I + LDQ I PL++YFFWP++DAWE++K +++ WI K +
Sbjct: 3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAV 62
Query: 152 ILLNQATDIINLWQQSG 168
+LN+ T++IN W++S
Sbjct: 63 NILNRITEVINFWEESA 79
>gi|77744800|gb|ABB02356.1| Ycf65 [Lepocinclis spirogyroides]
Length = 102
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 92 RLVLKFIWM-EKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
+ +L+F+W +K I +ALDQ + +IP+++YFFWPR DAW++++ L+SK WIS +
Sbjct: 3 KFLLRFLWFGQKGIAVALDQ-VCVERSIPITEYFFWPRSDAWDDMRICLKSKTWISPTDL 61
Query: 151 IILLNQATDIINLWQQSGGN 170
+ +LNQ T+IIN WQ+ +
Sbjct: 62 VSILNQLTEIINFWQEKNNS 81
>gi|374249487|ref|YP_005088706.1| ycf65 gene product [Phaeocystis antarctica]
gi|340008178|gb|AEK26810.1| Ycf65 [Phaeocystis antarctica]
Length = 84
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 91 PRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMM 150
PR L +W+E +G+A+DQ G IPL+ YFFWP+ D W++++ LE+KPWI K
Sbjct: 3 PRFKLNILWLENELGIAIDQIQSG-EQIPLTDYFFWPKSDTWDQIRRELETKPWILTKEK 61
Query: 151 IILLNQATDIINLWQQS 167
LLN I+N WQ S
Sbjct: 62 AQLLNATAPIMNQWQNS 78
>gi|28380143|sp|Q9TLZ0.3|RRP3_CYACA RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
Length = 101
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 95 LKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILL 154
+K +W+ NI +A+D+ I G P++ Y+FWPR DAWE+LK L+S+P + K +++L
Sbjct: 6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVIL 64
Query: 155 NQATDIINLWQQS 167
NQ T II+ WQ++
Sbjct: 65 NQVTRIIDYWQEN 77
>gi|416381170|ref|ZP_11684176.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 0003]
gi|357265570|gb|EHJ14319.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 0003]
Length = 88
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 104 IGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINL 163
+ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WI + I +LN+AT++IN
Sbjct: 1 MAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWILEPERIDVLNKATEVINY 59
Query: 164 WQQ 166
WQ
Sbjct: 60 WQD 62
>gi|27923875|sp|Q9BAC2.1|RRP3_EUGMY RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487725|gb|AAK27693.1|AF347932_1 ycf65 [Euglena myxocylindracea]
gi|34980274|gb|AAQ84049.1| hypothetical chloroplast protein 65 [Euglena myxocylindracea]
Length = 101
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 96 KFIW----MEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
KF+W +E I + LDQ + T P+++YFFWP+ DAW+EL LESKPWI+ I
Sbjct: 3 KFVWKVVCLENKIAICLDQQLAD-KTSPVTEYFFWPQSDAWDELNKLLESKPWITLSNRI 61
Query: 152 ILLNQATDIINLWQQSGG 169
+LN TD+IN W +
Sbjct: 62 FVLNILTDLINYWDEKKS 79
>gi|299890950|gb|ADJ57449.1| hypothetical chloroplast RF65 [uncultured prymnesiophyte C19847]
Length = 98
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 95 LKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILL 154
LK +W E+ +GL+L+Q I + +IP++ YF WP+ DAWE+LK L+SKPW+ + +++L
Sbjct: 7 LKLVWQEQFLGLSLNQIIDNH-SIPMTSYFIWPKTDAWEQLKFELDSKPWLQEAEKVMVL 65
Query: 155 NQATDIINLWQQ 166
N T ++N W++
Sbjct: 66 NNITRLMNQWRE 77
>gi|376403740|ref|YP_005090101.1| ycf65 gene product (chloroplast) [Fucus vesiculosus]
gi|269991303|emb|CAX12486.1| conserved hypothetical plastid protein [Fucus vesiculosus]
Length = 107
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 94 VLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIIL 153
V K IW + +GLA+D+ + T+PL+ +FFWPR++ W+ LK L KPWIS++ I +
Sbjct: 9 VFKIIWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDI 68
Query: 154 LNQATDIINLWQQS 167
LN +IIN W ++
Sbjct: 69 LNSYNEIINYWLRN 82
>gi|363399149|gb|AEW12966.1| putative ribosomal protein 3 [Colacium vesiculosum]
Length = 101
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ L F+W +K IG+AL+Q + G IP++ Y +WP DAW+ ++ L+ K WIS +
Sbjct: 3 KFALNFLWSDKAIGVALEQKV-GEKVIPITPYVYWPSGDAWDVMRVYLDQKNWISNEYGF 61
Query: 152 ILLNQATDIINLWQQ 166
+ L + TD+IN WQ
Sbjct: 62 VFLTRITDVINYWQD 76
>gi|403066656|ref|YP_006639145.1| putative plastid-specific 30S ribosomal protein (chloroplast)
[Saccharina japonica]
gi|378787569|gb|AFC40199.1| putative plastid-specific 30S ribosomal protein (chloroplast)
[Saccharina japonica]
Length = 106
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 88 LEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQ 147
L K V K +W + +GLA+D+ + T+P++ +FFWPR++ W+ LK L KPW+S+
Sbjct: 2 LNKSVYVFKILWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSK 61
Query: 148 KMMIILLNQATDIINLW 164
I +LN T+IIN W
Sbjct: 62 DDSIDILNAYTEIINYW 78
>gi|269101006|ref|YP_003289154.1| Probable plastid-specific 30S ribosomal protein [Ectocarpus
siliculosus]
gi|266631514|emb|CAV31185.1| Probable plastid-specific 30S ribosomal protein [Ectocarpus
siliculosus]
gi|270118644|emb|CAT18690.1| Probable plastid-specific 30S ribosomal protein [Ectocarpus
siliculosus]
Length = 106
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 94 VLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIIL 153
V K +W + +GLA+D+ + T+P++ +FFWPR++ W+ LK L KPW+S+ I +
Sbjct: 8 VFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDI 67
Query: 154 LNQATDIINLW 164
LN T IIN W
Sbjct: 68 LNNYTTIINYW 78
>gi|189095327|ref|YP_001936340.1| putative ribosomal protein 3 [Heterosigma akashiwo]
gi|157694670|gb|ABV65946.1| 30S ribosomal plastid-specific protein 3 [Heterosigma akashiwo]
gi|157777901|gb|ABV70087.1| 30S ribosomal plastid-specific protein 3 [Heterosigma akashiwo]
Length = 102
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+ K +W++ IG+++D+ + +P++ ++FWPR D W+ LK LE KPW+S++ +
Sbjct: 3 KFYFKVVWLKYCIGISVDKKLKNSYRVPITSFYFWPRVDGWKLLKHELELKPWLSERERV 62
Query: 152 ILLNQATDIINLWQQS 167
+LN T II++W+
Sbjct: 63 TILNGYTRIISIWKDC 78
>gi|215400723|ref|YP_002327484.1| probable 30S ribosomal protein [Vaucheria litorea]
gi|194441173|gb|ACF70901.1| probable 30S ribosomal protein [Vaucheria litorea]
Length = 109
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 90 KPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKM 149
K + + K IW +IG+A++Q Y IPL+ ++FWP++D W+ LK L+SKPWI +
Sbjct: 4 KQKYLFKIIWSRTSIGIAVNQIYDNYYDIPLTTFYFWPKEDGWQLLKLELDSKPWILESS 63
Query: 150 MIILLNQATDIINLW 164
I+LN +I+ W
Sbjct: 64 KNIILNGYALLIDYW 78
>gi|77744778|gb|ABB02337.1| Ycf65 [Euglenaria anabaena]
Length = 105
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
R +LKF+W+EK+IG+ALDQ + G T PL+ + FWP +D+W LE+ I++ +
Sbjct: 3 RFILKFLWLEKSIGVALDQKV-GEKTTPLNDFKFWPGEDSWNITLKYLENSVIITEAEKV 61
Query: 152 ILLNQATDIINLWQQ 166
LLN TD+I WQ
Sbjct: 62 RLLNTLTDVITYWQD 76
>gi|30468119|ref|NP_849006.1| ORF92 [Cyanidioschyzon merolae strain 10D]
gi|30409219|dbj|BAC76168.1| ycf65 (chloroplast) [Cyanidioschyzon merolae strain 10D]
Length = 92
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMI 151
+L LK + + + +A+DQ + +P++ Y+FWP DAW LKT LESK WIS
Sbjct: 2 KLKLKVVSSNQLLAIAVDQEMKNKWFMPVTCYYFWPTTDAWNLLKTELESKRWISAIQRK 61
Query: 152 ILLNQATDIINLWQQSG 168
+LL++AT +IN WQ +
Sbjct: 62 VLLDEATYVINHWQSNS 78
>gi|11465482|ref|NP_045127.1| putative ribosomal protein 3 [Cyanidium caldarium]
gi|6466385|gb|AAF12967.1|AF022186_90 unknown [Cyanidium caldarium]
Length = 72
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 120 LSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 167
++ Y+FWPR DAWE+LK L+S+P + K +++LNQ T II+ WQ++
Sbjct: 1 MTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 48
>gi|71842289|ref|YP_277377.1| putative ribosomal protein 3 [Emiliania huxleyi]
gi|60101532|gb|AAX13876.1| hypothetical chloroplast RF65 [Emiliania huxleyi]
gi|336286202|gb|AEI29538.1| putative ribosomal protein 3 [Emiliania huxleyi]
Length = 100
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 92 RLVLKFIWMEKNIGLALDQSIPGYGTIP--LSQYFFWPRKDAWEELKTTLESKPWISQKM 149
R + +W E +IG+A+D+ + T P ++ Y++WP+ DAWE+++ LE+K WI +
Sbjct: 4 RFGFRLVWGENSIGIAIDEI---FLTTPSLITNYYYWPQTDAWEQIRLDLETKIWIPKDE 60
Query: 150 MIILLNQATDIINLWQQS 167
+LN T+I+N W+++
Sbjct: 61 QRKILNTITEILNSWKKN 78
>gi|194247863|dbj|BAG55386.1| hypothetical protein [chlorophyte sp. MBIC11204]
Length = 57
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 24/29 (82%)
Query: 137 TTLESKPWISQKMMIILLNQATDIINLWQ 165
+ LES+PW+S++ ++LLN+ T++IN WQ
Sbjct: 6 SALESRPWVSERDKVLLLNKTTEVINFWQ 34
>gi|222156739|ref|YP_002556878.1| hypothetical protein LF82_318 [Escherichia coli LF82]
gi|387617337|ref|YP_006120359.1| hypothetical protein NRG857_10050 [Escherichia coli O83:H1 str. NRG
857C]
gi|422379811|ref|ZP_16459995.1| hypothetical protein HMPREF9532_01332 [Escherichia coli MS 57-2]
gi|432732712|ref|ZP_19967545.1| hypothetical protein WGK_02562 [Escherichia coli KTE45]
gi|432759796|ref|ZP_19994291.1| hypothetical protein A1S1_01921 [Escherichia coli KTE46]
gi|432905194|ref|ZP_20114100.1| hypothetical protein A13Y_02474 [Escherichia coli KTE194]
gi|433038972|ref|ZP_20226573.1| hypothetical protein WIE_02322 [Escherichia coli KTE113]
gi|222033744|emb|CAP76485.1| hypothetical protein LF82_318 [Escherichia coli LF82]
gi|312946598|gb|ADR27425.1| hypothetical protein NRG857_10050 [Escherichia coli O83:H1 str. NRG
857C]
gi|324008910|gb|EGB78129.1| hypothetical protein HMPREF9532_01332 [Escherichia coli MS 57-2]
gi|431275899|gb|ELF66926.1| hypothetical protein WGK_02562 [Escherichia coli KTE45]
gi|431308969|gb|ELF97248.1| hypothetical protein A1S1_01921 [Escherichia coli KTE46]
gi|431433494|gb|ELH15166.1| hypothetical protein A13Y_02474 [Escherichia coli KTE194]
gi|431551670|gb|ELI25642.1| hypothetical protein WIE_02322 [Escherichia coli KTE113]
Length = 577
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 28 VKPTKTTILHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIPATPVETKAGVSVKQ 87
V+ + +LH +RT + +RL L +++ E + +P ETK GV +
Sbjct: 434 VEKFEQELLHFDRTADVEMPRRLKELEKLKNIPYSEVRSLRRYLDGYSPFETKHGVKGAE 493
Query: 88 LEKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQ 147
E +V+ W + N G L+ G TIP+ ++D++E + Q
Sbjct: 494 FENVLVVVGRGWNQYNFGEMLE--FAGAQTIPVD------KQDSFERNRNLFYVACSRPQ 545
Query: 148 KMMIILLNQA 157
K + IL NQA
Sbjct: 546 KRLAILFNQA 555
>gi|449459258|ref|XP_004147363.1| PREDICTED: ABC transporter G family member 5-like [Cucumis sativus]
gi|449526086|ref|XP_004170045.1| PREDICTED: ABC transporter G family member 5-like [Cucumis sativus]
Length = 620
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 34 TILHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIPATPVETKAGVSVKQLEKPRL 93
++LH + + N L+ L P L E S ETI TP +T+ + QL+ P+
Sbjct: 251 SVLHHGSVEHLGLNLTLIGLQPPLHLNILEFAIESIETIQQTPNQTQLLIPHSQLKPPKF 310
Query: 94 VLKFIWM------EKNIGLALDQSIP 113
L+ ++ E I + + +SIP
Sbjct: 311 TLQQLFQQSKVIDEDTIKIGIHKSIP 336
>gi|170052833|ref|XP_001862401.1| brain chitinase and chia [Culex quinquefasciatus]
gi|167873623|gb|EDS37006.1| brain chitinase and chia [Culex quinquefasciatus]
Length = 2681
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 6 ALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR 46
A+ VN A T RS FPS+K+ V PT I++ KP R
Sbjct: 1361 AVNEAVNEASTLRSKFPSRKIVVTPTPNAIVNDEADKPSRR 1401
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.126 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,509,030,941
Number of Sequences: 23463169
Number of extensions: 92019151
Number of successful extensions: 275096
Number of sequences better than 100.0: 242
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 274315
Number of HSP's gapped (non-prelim): 682
length of query: 173
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 41
effective length of database: 9,262,057,059
effective search space: 379744339419
effective search space used: 379744339419
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)