Query 030716
Match_columns 173
No_of_seqs 75 out of 77
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt9_A Probable 30S ribosomal 100.0 7E-49 2.4E-53 303.5 8.8 77 89-166 6-82 (116)
2 1mdy_A Protein (MYOD BHLH doma 34.6 32 0.0011 23.4 3.0 37 129-166 28-64 (68)
3 2ql2_B Neurod1, neurogenic dif 32.3 45 0.0015 22.0 3.4 38 129-166 18-55 (60)
4 1wzd_A Heme oxygenase; electro 27.0 75 0.0025 24.7 4.3 42 121-163 158-203 (215)
5 1nlw_A MAD protein, MAX dimeri 23.0 57 0.0019 22.6 2.6 39 130-168 18-56 (80)
6 1nkp_A C-MYC, MYC proto-oncoge 21.7 62 0.0021 22.7 2.7 38 130-167 23-60 (88)
7 2lfh_A DNA-binding protein inh 21.4 80 0.0027 22.0 3.1 38 129-166 30-67 (68)
8 2dh2_A 4F2 cell-surface antige 18.9 92 0.0032 26.4 3.6 42 102-168 94-135 (424)
9 3u5v_A Protein MAX, transcript 17.9 97 0.0033 21.3 2.9 38 129-167 21-60 (76)
10 2kvs_A Uncharacterized protein 15.5 90 0.0031 22.4 2.3 35 127-163 36-71 (80)
No 1
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=100.00 E-value=7e-49 Score=303.47 Aligned_cols=77 Identities=49% Similarity=1.044 Sum_probs=75.6
Q ss_pred CCCcEEEEEEeecCceeEEeeeeecCCCCccCcccccccCCchHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHh
Q 030716 89 EKPRLVLKFIWMEKNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 166 (173)
Q Consensus 89 ~~~rfvLK~LWlek~IgiAlDQ~v~g~~t~PLT~YfFWPr~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe 166 (173)
-++||+|||||||+||||||||+| |+|++|||+||||||+||||+||.+||+|+||+++|||+||||+|||||||||
T Consensus 6 ~m~rf~LKvlWlek~IaiAvDQ~v-g~~t~PLT~YfFWPr~DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe 82 (116)
T 2kt9_A 6 VHTSFILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQD 82 (116)
T ss_dssp CCCCEEEEEEECSSCEEEEEEEEE-TTEEEECSCCEEETTSCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeeEEEeccceeEEeeeee-cCCCCCCcceeeCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999 99999999999999999999999999999999999999999999999999998
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=34.59 E-value=32 Score=23.40 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.7
Q ss_pred CchHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHh
Q 030716 129 KDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 166 (173)
Q Consensus 129 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe 166 (173)
+||.+.|+..+-.-+ =..-.+|++|-.|.+-|.+=|+
T Consensus 28 N~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 28 NEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 478899999887544 2345799999999999998876
No 3
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=32.33 E-value=45 Score=22.03 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=28.7
Q ss_pred CchHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHh
Q 030716 129 KDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 166 (173)
Q Consensus 129 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe 166 (173)
++|.+.|+..+-.-+==..-.+|++|-.|.+-|.+=|+
T Consensus 18 N~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 18 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHH
Confidence 47888999888543322245789999999999998776
No 4
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=26.99 E-value=75 Score=24.67 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=34.6
Q ss_pred cccccccC----CchHHHHHHhhccCCCCChhHHHHHHHHHHHHHHH
Q 030716 121 SQYFFWPR----KDAWEELKTTLESKPWISQKMMIILLNQATDIINL 163 (173)
Q Consensus 121 T~YfFWPr----~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~ 163 (173)
+.||-|+. .+-|...+..|+.-+| ++.++-.++..+..+..+
T Consensus 158 ~~f~~~~~~~~~~~~~~~fr~~Ld~~~~-~~~~~~~ii~eA~~aF~~ 203 (215)
T 1wzd_A 158 LGFYHFEGIAKLKVYKDEYREKLNNLEL-SDEQREHLLKEATDAFVF 203 (215)
T ss_dssp CGGGCCTTCSCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHH
T ss_pred ceeeecCCcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHH
Confidence 47888888 3479999999999987 899999999888777654
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.01 E-value=57 Score=22.59 Aligned_cols=39 Identities=26% Similarity=0.190 Sum_probs=25.7
Q ss_pred chHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHhcC
Q 030716 130 DAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 168 (173)
Q Consensus 130 DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe~~ 168 (173)
+..+.|+..+-.-+=-....++.||..|++-|.+=|+..
T Consensus 18 ~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 18 LSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455667776632211123457999999999999887753
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.73 E-value=62 Score=22.66 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.3
Q ss_pred chHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHhc
Q 030716 130 DAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQS 167 (173)
Q Consensus 130 DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe~ 167 (173)
|+.+.|+..+-+-+==....++.||..|++-|.+=|+.
T Consensus 23 ~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 23 RSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55667777765433234679999999999999987764
No 7
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.41 E-value=80 Score=22.03 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=28.5
Q ss_pred CchHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHh
Q 030716 129 KDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 166 (173)
Q Consensus 129 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe 166 (173)
+||.+.||..+-+-|==..-.+|++|--|.+-|.+=|+
T Consensus 30 N~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 30 NHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp HHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 57899999998665422234689999999998887664
No 8
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=18.95 E-value=92 Score=26.36 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=27.9
Q ss_pred CceeEEeeeeecCCCCccCcccccccCCchHHHHHHhhccCCCCChhHHHHHHHHHHHHHHHHHhcC
Q 030716 102 KNIGLALDQSIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 168 (173)
Q Consensus 102 k~IgiAlDQ~v~g~~t~PLT~YfFWPr~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~WQe~~ 168 (173)
+.|.|-+|-|+ +| ++ =.+|| + .+.=.+.+...++++||.+.|
T Consensus 94 ~Gi~vilD~V~-NH-~s-~~~wF--~--------------------~q~~~Vr~~~~~~~~~Wl~~g 135 (424)
T 2dh2_A 94 KSIRVILDLTP-NY-RG-ENSWF--S--------------------TQVDTVATKVKDALEFWLQAG 135 (424)
T ss_dssp TTCEEEEECCT-TT-TS-SSTTC--S--------------------SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECC-Cc-CC-Ccccc--c--------------------ccCHHHHHHHHHHHHHHHHcC
Confidence 57999999998 66 44 23333 1 122355677789999999854
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=17.93 E-value=97 Score=21.33 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=27.5
Q ss_pred CchHHHHHHhhcc-CCCCChh-HHHHHHHHHHHHHHHHHhc
Q 030716 129 KDAWEELKTTLES-KPWISQK-MMIILLNQATDIINLWQQS 167 (173)
Q Consensus 129 ~DAWEeLK~eLEs-K~WIs~~-e~i~lLNq~TeIIN~WQe~ 167 (173)
++++++|+..+-. -+ -... .++.||..|.+-|.+=|+.
T Consensus 21 N~~f~~Lr~~vP~~~~-~~K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 21 NEAFRELGRMCQMHLK-SDKAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp HHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-ccccccHHHHHHHHHHHHHHHHHH
Confidence 4788999988762 11 0122 4899999999999988764
No 10
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=15.49 E-value=90 Score=22.42 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=29.0
Q ss_pred cCC-chHHHHHHhhccCCCCChhHHHHHHHHHHHHHHH
Q 030716 127 PRK-DAWEELKTTLESKPWISQKMMIILLNQATDIINL 163 (173)
Q Consensus 127 Pr~-DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIIN~ 163 (173)
|+. +-|++|..+||. |-.+.+-+++.|++-.+-+.
T Consensus 36 PK~~~d~~eIs~Yle~--~~~~~~~~e~vkralsly~~ 71 (80)
T 2kvs_A 36 PRLEERHQVIRAYVMS--NYTDHQLIETTNRAISLYMA 71 (80)
T ss_dssp CSSCSSSHHHHHHHHH--HCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHH
Confidence 544 889999999999 88888889999988776553
Done!