BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030717
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VA3|CYC6_ARATH Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=petJ PE=1
SV=1
Length = 175
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 86/107 (80%), Positives = 97/107 (90%)
Query: 63 SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK 122
SL QT+DIQ+G +LF +ACIGCHD GGN+IQPGATLF KDL+RNGVDTE+EIY VTYFGK
Sbjct: 68 SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGK 127
Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169
GRMPGFGEKCTPRGQCTFG RLQDE+IKLLA+FVK QADQGWP + +
Sbjct: 128 GRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVST 174
>sp|P00110|CYC6_BUMFI Cytochrome c6 OS=Bumilleriopsis filiformis GN=petJ PE=1 SV=1
Length = 86
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
DI+ G +F C CH GG NVI P TL L+ NG++ I + GK MP
Sbjct: 1 ADIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVTNGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
FG RL D DI+ +A +V SQ++QGW
Sbjct: 60 -----------AFGGRLSDSDIEDVANYVLSQSEQGW 85
>sp|Q8WKJ8|CYC6_PORYE Cytochrome c6 OS=Porphyra yezoensis GN=petJ PE=1 SV=1
Length = 110
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG 123
+A D+ G +F C CH GG N I P TL L+ N ++T D I + GK
Sbjct: 22 IAFAADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKN 81
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
MP FG RL DEDI+ A +V SQ+++GW
Sbjct: 82 AMPA------------FGGRLVDEDIEDAANYVLSQSEKGW 110
>sp|P00108|CYC6_PETFA Cytochrome c6 OS=Petalonia fascia GN=petJ PE=1 SV=1
Length = 85
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
VDI G S+F C CH GG NVI P TL L+ N ++ I + GK MP
Sbjct: 1 VDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALEENEMNNIKSITYQVTNGKNAMPA 60
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
FG RL + DI+ +A FV SQ+ +GW
Sbjct: 61 ------------FGGRLSETDIEDVANFVISQSQKGW 85
>sp|P00111|CYC6_PORTE Cytochrome c6 OS=Porphyra tenera GN=petJ PE=1 SV=1
Length = 85
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
D+ G +F C CH GG N I P TL L+ N ++T D I + GK MP
Sbjct: 1 ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
FG RL DEDI+ A +V SQ+++GW
Sbjct: 60 -----------AFGGRLVDEDIEDAANYVLSQSEKGW 85
>sp|Q9TLW1|CYC6_CYACA Cytochrome c6 OS=Cyanidium caldarium GN=petJ PE=3 SV=2
Length = 109
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 48 VLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG 107
++ + V+L + + +++ G +F C CH GG NVI P TL + L+ N
Sbjct: 6 IIVVAVTLCALFTNEHVVYSANLEHGEQIFSANCAACHAGGNNVIMPEKTLKAEALEANN 65
Query: 108 VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
+ I + GK MP F +RL D DI+ +A +V S+AD+GW
Sbjct: 66 IKNISAIANQVKNGKNAMPSF-------------SRLSDSDIEDVANYVLSKADKGW 109
>sp|Q9F1L9|CYC6_THEVL Cytochrome c6 OS=Thermosynechococcus vulcanus GN=petJ PE=3 SV=1
Length = 112
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 52 PVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTE 111
+++ F + A D+ G +F C CH GGGNV+ TL + L++ G+ +E
Sbjct: 10 AIAIALFVSLTPAALAADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSE 69
Query: 112 DEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
D I + GK MP F RL DE I+ +A +V QA +GW
Sbjct: 70 DAIIYQVQHGKNAMP------------AFAGRLTDEQIQDVAAYVLDQAAKGWA 111
>sp|P46445|CYC6_SYNY3 Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=petJ PE=1 SV=1
Length = 120
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 49 LCLP--VSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN 106
+ LP + LG + + A D+ G ++F C CH+GG N I P TL + DL+ N
Sbjct: 15 IALPCLIFLGGIFSLGNTALAADLAHGKAIFAGNCAACHNGGLNAINPSKTLKMADLEAN 74
Query: 107 GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
G ++ I G G MPGF +G R+ D D++ +A +V QA++GW
Sbjct: 75 GKNSVAAIVAQITNGNGAMPGF------KG------RISDSDMEDVAAYVLDQAEKGW 120
>sp|P00109|CYC6_ALAES Cytochrome c6 OS=Alaria esculenta GN=petJ PE=1 SV=1
Length = 86
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
+DI G ++F C CH GG NVI P TL L N + + + I + GK MP
Sbjct: 1 IDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMVSVNAITYQVTNGKNAMPA 60
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
FG+RL + DI+ +A FV +Q+D+GW
Sbjct: 61 ------------FGSRLAETDIEDVANFVLTQSDKGW 85
>sp|P51200|CYC6_PORPU Cytochrome c6 OS=Porphyra purpurea GN=petJ PE=3 SV=1
Length = 110
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG 123
+A D+ G +F C CH GG N I P TL L+ N ++ D I + GK
Sbjct: 22 VAFAADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNGIDAITYQVTNGKN 81
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
MP FG RL DEDI+ A +V SQ+++GW
Sbjct: 82 AMPA------------FGGRLVDEDIEDAANYVLSQSEKGW 110
>sp|P00114|CYC6_SYNLI Cytochrome c6 OS=Synechococcus lividus GN=petJ PE=1 SV=1
Length = 87
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
D+ G +F C CH GGGNV+ TL + L++ G+++ED I + GK MP
Sbjct: 1 ADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMNSEDAIIYQVQHGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
F RL DE I+ +A +V QA +GW
Sbjct: 60 -----------AFAGRLTDEQIQDVAAYVLDQAAKGWA 86
>sp|P07497|CYC6_SYNP6 Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=petJ PE=1 SV=2
Length = 111
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 48 VLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG 107
+ L V L F ++ AQ D+ G +F C CH GG NV+ P TL DL + G
Sbjct: 9 IAALVVLLAF----IAPAQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYG 64
Query: 108 VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
+ + + I GKG MP FG K L +DI +A +V Q+++GW
Sbjct: 65 MASIEAITTQVTNGKGAMPAFGSK------------LSADDIADVASYVLDQSEKGW 109
>sp|P25935|CYC6_SYNE7 Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942) GN=petJ
PE=3 SV=1
Length = 111
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 48 VLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG 107
+ L V L F ++ AQ D+ G +F C CH GG NV+ P TL DL + G
Sbjct: 9 IAALVVLLAF----IAPAQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYG 64
Query: 108 VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
+ + + I GKG MP FG K L +DI +A +V Q+++GW
Sbjct: 65 MASIEAITTQVTNGKGAMPAFGSK------------LSADDIADVASYVLDQSEKGW 109
>sp|P0A3X9|CYC6_THEEB Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1)
GN=petJ PE=3 SV=1
Length = 112
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 52 PVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTE 111
+++ + A D+ G +F C CH GGGNV+ TL + L++ G+ +E
Sbjct: 10 AIAIALLVSLTPAALAADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSE 69
Query: 112 DEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
D I + GK MP F RL DE I+ +A +V QA +GW
Sbjct: 70 DAIIYQVQHGKNAMP------------AFAGRLTDEQIQDVAAYVLDQAAKGWA 111
>sp|Q85FS2|CYC6_CYAME Cytochrome c6 OS=Cyanidioschyzon merolae GN=petJ PE=3 SV=1
Length = 104
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
D+ G +F C CH GG NVI P TL L L+ N +++ + I GK MP F
Sbjct: 22 DLAHGEQIFSANCAACHAGGNNVIMPEKTLKLDALEANQMNSVEAISTQVRNGKNAMPSF 81
Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
+RL D DI+ +A +V +QA +GW
Sbjct: 82 -------------SRLTDSDIEDVANYVLAQAKKGW 104
>sp|P00112|CYC6_MICAE Cytochrome c6 OS=Microcystis aeruginosa GN=petJ PE=1 SV=2
Length = 81
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKC 132
G S+F C CH GG NV+ TL +DL + G D+ + I G G MP
Sbjct: 2 GASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMP------ 55
Query: 133 TPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
FG RL EDI+ +A +V +QA++GW
Sbjct: 56 ------AFGGRLSAEDIEAVANYVLAQAEKGW 81
>sp|Q6B941|CYC6_GRATL Cytochrome c6 OS=Gracilaria tenuistipitata var. liui GN=petJ PE=3
SV=1
Length = 108
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 58 FHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHV 117
F V L D+ G +F C CH G N I P TL L N +++ + I +
Sbjct: 14 FTNNVQLTFAADLDAGEQIFSANCSACHANGNNAIMPDKTLKSDALSENKMNSIEAITNQ 73
Query: 118 TYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
GK MP FG RL DEDI+ +A +V ++++ GW
Sbjct: 74 VKNGKNAMPA------------FGGRLADEDIENVANYVLNKSENGW 108
>sp|P0A3Y0|CYC6_SYNEL Cytochrome c6 OS=Synechococcus elongatus GN=petJ PE=1 SV=1
Length = 87
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
D+ G +F C CH GGGNV+ TL + L++ G+ +ED I + GK MP
Sbjct: 1 ADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
F RL DE I+ +A +V QA +GW
Sbjct: 60 -----------AFAGRLTDEQIQDVAAYVLDQAAKGWA 86
>sp|P00116|CYC6_APHFL Cytochrome c6 OS=Aphanizomenon flos-aquae GN=petJ PE=1 SV=1
Length = 87
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
D G +LF+ C CH GGGN++ TL + L++ + + I GKG MP
Sbjct: 1 ADTVSGAALFKANCAQCHVGGGNLVNRAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPK 166
FG RL+ E I+ +A +V QAD GW K
Sbjct: 60 -----------AFGIRLKAEQIENVAAYVLEQADNGWKK 87
>sp|Q3MDW2|CYC6_ANAVT Cytochrome c6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=petJ PE=3 SV=1
Length = 111
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 46 YNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR 105
++++ L ++L F A S A D+ G +F C CH GG N++Q TL +DL++
Sbjct: 5 FSLVLLGIAL-FTFAFSSPALAADVANGAKIFSANCASCHAGGKNLVQAQKTLKKEDLEK 63
Query: 106 NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
G+ + + I GK MP F +G RL+ + I+ +A +V QAD+ W
Sbjct: 64 FGMYSAEAIIAQVTNGKNAMPAF------KG------RLKPDQIEDVAAYVLGQADKSW 110
>sp|B7JYX3|CYC6_CYAP8 Cytochrome c6 OS=Cyanothece sp. (strain PCC 8801) GN=petJ PE=3 SV=1
Length = 111
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
D G ++F C CH GG N++ P TL DL+ NG+ + D I GK MP F
Sbjct: 27 DAAAGKTVFTAKCAQCHLGGKNLVNPAKTLSKADLEANGMASLDAIITQVTNGKAAMPAF 86
Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
G+ L E I+ +A +V +QA+ W
Sbjct: 87 GK------------LLTAEQIENVATYVLAQAEADW 110
>sp|P00115|CYC6_SYNP3 Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27167 / PCC 6312)
GN=petJ PE=1 SV=1
Length = 87
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
DI G +F C CH GGGNV+ TL + L++ G+++ D I + GK MP
Sbjct: 1 ADIADGAKVFSANCAACHMGGGNVVMANKTLKKEALEQFGMNSADAIMYQVQNGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
FG RL + I+ +A +V Q+ W
Sbjct: 60 -----------AFGGRLSEAQIENVAAYVLDQSSNKWA 86
>sp|P00118|CYC6_SPIMA Cytochrome c6 OS=Spirulina maxima GN=petJ PE=1 SV=1
Length = 89
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTY---FGKG 123
D+ G S+F C CH GG NVI TL DL + G D +D + V Y GK
Sbjct: 2 DVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFD-DDAVAAVAYQVTNGKN 60
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
MPGF + +P+ Q ED+ A +V QA++GW
Sbjct: 61 AMPGFNGRLSPK---------QIEDV---AAYVVDQAEKGW 89
>sp|B7K722|CYC6_CYAP7 Cytochrome c6 OS=Cyanothece sp. (strain PCC 7424) GN=petJ PE=3 SV=1
Length = 110
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 57 FFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH 116
F + VS A D G +F C CH GG NV+ TL DL++ + + I
Sbjct: 15 FGFSWVSPAFAGDAGNGSKVFSANCNACHLGGKNVVNAAKTLNKSDLEKYAMLDLEAIKT 74
Query: 117 VTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
GKG MP FG++ TP Q ED+ A +V +A++GW
Sbjct: 75 QVTNGKGAMPAFGKRLTPD---------QIEDV---ATYVLEKAEKGW 110
>sp|P0A3X7|CYC6_NOSS1 Cytochrome c6 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=petJ
PE=3 SV=1
Length = 111
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 46 YNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR 105
++++ L ++L F A S A D G +F C CH GG N++Q TL DL++
Sbjct: 5 FSLVLLGIAL-FTFAFSSPALAADSVNGAKIFSANCASCHAGGKNLVQAQKTLKKADLEK 63
Query: 106 NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
G+ + + I GK MP F +G RL+ E I+ +A +V +AD W
Sbjct: 64 YGMYSAEAIIAQVTNGKNAMPAF------KG------RLKPEQIEDVAAYVLGKADADW 110
>sp|P0A3X8|CYC6_ANASO Cytochrome c6 OS=Anabaena sp. (strain PCC 7119) GN=petJ PE=3 SV=1
Length = 111
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 46 YNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR 105
++++ L ++L F A S A D G +F C CH GG N++Q TL DL++
Sbjct: 5 FSLVLLGIAL-FTFAFSSPALAADSVNGAKIFSANCASCHAGGKNLVQAQKTLKKADLEK 63
Query: 106 NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
G+ + + I GK MP F +G RL+ E I+ +A +V +AD W
Sbjct: 64 YGMYSAEAIIAQVTNGKNAMPAF------KG------RLKPEQIEDVAAYVLGKADADW 110
>sp|Q8Z0D7|CYC6L_NOSS1 Cytochrome c6-like OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=all0161 PE=3 SV=1
Length = 111
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGR 124
A + G +F C GCH G N+I+ G L K L++ G+D+ + I + GK
Sbjct: 23 ANAENTINGEQIFSVHCAGCHINGSNIIRRGKNLQKKTLKKYGMDSLEAIEAIVTNGKNN 82
Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
M + + RL +++I+ +A +V QA++GW
Sbjct: 83 MSAYKD------------RLSEQEIQDVAAYVLEQAEKGW 110
>sp|P00117|CYC6_PLEBO Cytochrome c6 OS=Plectonema boryanum GN=petJ PE=1 SV=1
Length = 85
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
D G +F C CH GG I TL L NG DT + I GKG MP
Sbjct: 1 ADAAAGGKVFNANCAACHASGGGQINGAKTLKKNALTANGKDTVEAIVAQVTNGKGAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
F RL D+ I+ +A +V +A++GW
Sbjct: 60 -----------AFKGRLSDDQIQSVALYVLDKAEKGW 85
>sp|P81244|CYC6_PROHO Cytochrome c6 (Fragment) OS=Prochlorothrix hollandica GN=petJ PE=1
SV=1
Length = 45
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 24/42 (57%)
Query: 73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEI 114
G S+F C CH GG N+I P TL L DLQ NG DT I
Sbjct: 4 GASIFSAKCAQCHLGGKNIINPTKTLSLADLQANGKDTVSAI 45
>sp|P11448|CYC6_BRYMA Cytochrome c6 OS=Bryopsis maxima GN=petJ PE=1 SV=1
Length = 88
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMP 126
D++ G +F C CH GG N ++P TL +D+ + +G + + I GKG MP
Sbjct: 3 DLEIGADVFTGNCAACHAGGANSVEPLKTLNKEDVTKYLDGGLSIEAITSQVRNGKGAMP 62
Query: 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
+ + RL DE+I + +V ++GW
Sbjct: 63 AWSD------------RLDDEEIDGVVAYVFKNINEGW 88
>sp|O30881|CYC6_SYNP2 Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=petJ PE=1 SV=1
Length = 117
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 81 CIGCHDGGGNVIQPGATL-------FLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCT 133
C CH GG N + P TL +L + E+ + + G+G MP
Sbjct: 38 CAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMP------- 90
Query: 134 PRGQCTFGARLQDEDIKLLAQFVKSQADQ 162
FG RL D DI +A ++ QA+
Sbjct: 91 -----AFGGRLSDADIANVAAYIADQAEN 114
>sp|P0C180|CYC6_ANAVA Cytochrome c6 OS=Anabaena variabilis GN=petJ PE=1 SV=1
Length = 86
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
D G +F C CH GG N+ TL DL++ G + I GK MP
Sbjct: 1 ADSVNGAKIFSANCASCHAGGKNLGVAQKTLKKADLEKYGAYSAMAIGAQVTNGKNAMP- 59
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
F RL+ E+I +A +V +A+ W
Sbjct: 60 -----------AFKGRLKPEEIXXVAAYVLGKAEAEW 85
>sp|Q2JTY6|CY550_SYNJA Cytochrome c-550 OS=Synechococcus sp. (strain JA-3-3Ab) GN=psbV
PE=3 SV=1
Length = 178
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ------RNGVDTEDEIYH-VTYFGK 122
+ +G LF +AC CH GG P TL L DL+ N + D I + VTY G
Sbjct: 60 LARGKQLFNRACAQCHVGGQTYPNPDVTLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGV 119
Query: 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ--GW--PKIESMED 172
+ + + L DED+KL+A ++ QA GW K ES D
Sbjct: 120 ESLVEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKSESHSD 173
>sp|P22343|CYC6_EUGVI Cytochrome c6 OS=Euglena viridis GN=petJ PE=1 SV=1
Length = 87
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMPGFG 129
G +F C CH GGN+I PG L ++ +G T++ I + GKG MP
Sbjct: 1 SGAEVFGNNCSSCHVNGGNIIIPGHVLSQSAMEEYLDGGYTKEAIEYQVRNGKGPMP--- 57
Query: 130 EKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164
+ L + +IK + +V SQA W
Sbjct: 58 ---------AWEGVLDESEIKEVTDYVYSQASGPW 83
>sp|Q2JIS8|CY550_SYNJB Cytochrome c-550 OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=psbV PE=3 SV=1
Length = 180
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 61 AVSLAQTVDI-------QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ------RNG 107
AV+L+ T I KG LF AC CH GG P +L L DL+ N
Sbjct: 46 AVALSPTESITFTEAQLAKGKKLFNTACAQCHVGGQTYPNPDVSLKLSDLEGATPPRDNV 105
Query: 108 VDTEDEIYH-VTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ--GW 164
+ D I + VTY G + + + L DED+KL+A ++ QA GW
Sbjct: 106 LAIVDYIKNPVTYDGVESLLEYHPNTQLTSEYPRLRNLTDEDLKLIAGYILVQAKTVPGW 165
Query: 165 --PKIESMED 172
K ES D
Sbjct: 166 GGTKNESHSD 175
>sp|Q09099|CYC6_CHLBR Cytochrome c6 OS=Chlorolobion braunii GN=petJ PE=1 SV=1
Length = 89
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATL---FLKDLQRNGVDTEDEIYHVTYFGKGR 124
D+ G ++F C CH GGGN + P TL ++ G + E +Y + GKG
Sbjct: 2 ADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIEN-GKGA 60
Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
MP + RL +++I +A +V QA
Sbjct: 61 MP------------AWDGRLDEDEIAGVAAYVYDQA 84
>sp|Q9ET95|PSBV2_THEVL Cytochrome c-550-like protein OS=Thermosynechococcus vulcanus
GN=psbV2 PE=3 SV=1
Length = 175
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
VD+ +G LF + C CH GG + P +L LKDL + D I + F +
Sbjct: 68 VDLTRGKRLFEENCKNCHVGGSTLPNPLVSLSLKDL-KGATPPRDTIASLVAFQRSPKSY 126
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPKIESMED 172
G + + + L E ++ LA F+ A GW +ES D
Sbjct: 127 DGSEESYSCRRVSEDWLTTEQLETLAAFILRAAAVAPGW-GVESFPD 172
>sp|Q8DJE2|PSBV2_THEEB Cytochrome c-550-like protein OS=Thermosynechococcus elongatus
(strain BP-1) GN=psbV2 PE=1 SV=1
Length = 175
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG 127
VD+ +G LF + C CH GG + P +L LKDL + D I + F +
Sbjct: 68 VDLTRGKRLFEENCKNCHVGGSTLPNPLVSLSLKDL-KGATPPRDTIASLVAFQRSPKSY 126
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPKIESMED 172
G + + + L E ++ LA F+ A GW +ES D
Sbjct: 127 DGSEESYSCRRVSEDWLTTEQLETLAAFILRAAAVAPGW-GVESFPD 172
>sp|P57736|CYC6_SCEOB Cytochrome c6 OS=Scenedesmus obliquus GN=petJ PE=1 SV=1
Length = 89
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATL---FLKDLQRNGVDTEDEIYHVTYFGKG 123
+ D+ G F C CH GG N + P TL ++ + G + E Y V GKG
Sbjct: 1 SADLALGKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVEN-GKG 59
Query: 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
MP + L D++I +A +V QA
Sbjct: 60 AMP------------AWSGTLDDDEIAAVAAYVYDQA 84
>sp|P00119|CYC6_EUGGR Cytochrome c6 OS=Euglena gracilis GN=petJ PE=1 SV=1
Length = 87
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMPGFGE 130
G +F C CH GGNVI G L ++ +G T++ I + GKG MP
Sbjct: 2 GADVFADNCSTCHVNGGNVISAGKVLSKTAIEEYLDGGYTKEAIEYQVRNGKGPMP---- 57
Query: 131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKI 167
+ L +++I + +V +QA W +
Sbjct: 58 --------AWEGVLSEDEIVAVTDYVYTQAGGAWANV 86
>sp|Q2JTY7|PSBV2_SYNJA Cytochrome c-550-like protein OS=Synechococcus sp. (strain
JA-3-3Ab) GN=psbV2 PE=3 SV=1
Length = 174
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFG 129
+ G + F+ AC+ CH GG + P +L LKDL R D I + + + G
Sbjct: 71 LTDGKNRFQSACLNCHVGGSTLPAPNISLSLKDL-RGATPPRDTIQALVEYQRDPRSYDG 129
Query: 130 EKCTPRGQCTFGARLQDEDIKLLAQFV--KSQADQGW 164
+ + + + + DE ++ LA F+ +Q GW
Sbjct: 130 TEVSYGCRPVPPSWMDDEALRNLAAFILRAAQVAPGW 166
>sp|Q111E8|PSBV2_TRIEI Cytochrome c-550-like protein OS=Trichodesmium erythraeum (strain
IMS101) GN=psbV2 PE=3 SV=1
Length = 165
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
D+ +G F + C+ CH GG N++ P +L L+ L + D++ ++ F + M
Sbjct: 63 DLSEGKQTFAKNCLNCHVGGANLVNPSVSLSLEKL-KGATPPRDDLNNLVAFLRDPMIYD 121
Query: 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQG 163
G T + + ++++ +A F+ A +
Sbjct: 122 GSSYTLFCRQITENWMSQQEVENIAAFILRAAQKA 156
>sp|Q2JIS7|PSBV2_SYNJB Cytochrome c-550-like protein OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=psbV2 PE=3 SV=1
Length = 165
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 52 PVSLGFFHAAVSLAQTVD-IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ 104
PV L A +L T + + G + F+ AC+ CH GG + P +L LKDL+
Sbjct: 53 PVELPLDAAGHTLTFTPEQLTDGKNRFQSACLNCHVGGATLPAPNISLSLKDLR 106
>sp|P00107|CYC6_PAVLU Cytochrome c6 OS=Pavlova lutherii GN=petJ PE=1 SV=1
Length = 83
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 27/100 (27%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--------NGVDTEDEIYHVTYF 120
DI G +F C CH +Z TL L L + NG D +Y VT
Sbjct: 2 DIANGEQVFTGNCAACHS-----VZZZKTLELSSLWKAKSYLANFNG-DESAIVYQVTN- 54
Query: 121 GKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
GK MP FG RL+D++I +A +V S+A
Sbjct: 55 GKNAMP------------AFGGRLEDDEIANVASYVLSKA 82
>sp|P83391|CYC6_CLAGO Cytochrome c6 OS=Cladophora glomerata GN=petJ PE=1 SV=1
Length = 91
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMPG 127
+ G +F C CH GG N + TL +++ G T + I + GKG MP
Sbjct: 6 LADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPA 65
Query: 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160
+ + RL ++DI+ ++ +V QA
Sbjct: 66 WAD------------RLDEDDIEAVSNYVYDQA 86
>sp|O34215|GADH2_PECCY Gluconate 2-dehydrogenase cytochrome c subunit OS=Pectobacterium
cypripedii PE=1 SV=1
Length = 441
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 61 AVSLAQTVDIQKGVSLFRQACIGCHDGGGN---VIQPGATLFLKDLQRNGVDTED--EIY 115
A +L + D Q G S++ +C CH G+ + PGA Q G D +
Sbjct: 305 AKALWKGDDSQTGASVYVDSCAACHKTDGSRLSALLPGAAW-----QPGGAGEPDPTSLI 359
Query: 116 HVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQG 163
H+ G G +PG T FG RL D+ + + F++ G
Sbjct: 360 HIVLTG-GTLPGVQGAPTAITMPAFGWRLNDQQVADVVNFIRGSWGNG 406
>sp|B9DNJ3|GREA_STACT Transcription elongation factor GreA OS=Staphylococcus carnosus
(strain TM300) GN=greA PE=3 SV=1
Length = 160
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGF 128
DIQ+ + R A I G NV+Q G T+ ++ D E+E+Y + G F
Sbjct: 64 DIQRIEHMIRNALIIEDSGDNNVVQIGKTVTFIEIP----DGEEEVYQIV--GSAEADAF 117
Query: 129 GEKC---TPRGQCTFGARLQDE 147
K +P + G L DE
Sbjct: 118 NGKISNESPIAKSLIGKHLDDE 139
>sp|Q8NNK5|QCRC_CORGL Menaquinol-cytochrome c reductase cytochrome c subunit
OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM
20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=qcrC PE=1
SV=2
Length = 283
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 67 TVDIQKGVSLFRQACIGCHD--GGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGR 124
+ D+ +G LFR C CH+ G G + G + +L E EIY G
Sbjct: 163 SADVARGGDLFRLNCASCHNFTGRGGALSSGK--YAPNLD---AANEQEIYQAMLTGPQN 217
Query: 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
MP F ++ +L ++ K + F+KS + P
Sbjct: 218 MPKFSDR-----------QLSADEKKDIIAFIKSTKETPSP 247
>sp|Q8FNR0|QCRC_COREF Probable menaquinol-cytochrome c reductase cytochrome c subunit
OS=Corynebacterium efficiens (strain DSM 44549 / YS-314
/ AJ 12310 / JCM 11189 / NBRC 100395) GN=qcrC PE=3 SV=1
Length = 296
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 68 VDIQKGVSLFRQACIGCHD--GGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRM 125
+D+ +G LFR C CH+ G G + G + D E EIY G M
Sbjct: 177 LDVSRGGDLFRLNCASCHNFTGRGGALSSGKYAPVLDPA-----NEQEIYQAMLTGPQNM 231
Query: 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWP 165
P F ++ +L ++ K + F+KS + P
Sbjct: 232 PKFSDR-----------QLSADEKKDIIAFIKSTKETPSP 260
>sp|Q6NGA1|QCRC_CORDI Probable menaquinol-cytochrome c reductase cytochrome c subunit
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=qcrC PE=3 SV=1
Length = 281
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 68 VDIQKGVSLFRQACIGCHD--GGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRM 125
D+ +G LFR C CH+ G G + G + D E EIY G M
Sbjct: 162 ADVARGSDLFRLNCASCHNFTGRGGALSSGKYAPVLDPA-----NEQEIYQAMLTGPQNM 216
Query: 126 PGFGEK 131
P F ++
Sbjct: 217 PKFSDR 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,830,452
Number of Sequences: 539616
Number of extensions: 2710349
Number of successful extensions: 4942
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4867
Number of HSP's gapped (non-prelim): 60
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)