Query 030717
Match_columns 172
No_of_seqs 154 out of 1405
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13697 cytochrome c6; Provis 99.8 7.5E-20 1.6E-24 132.3 10.4 90 64-165 22-111 (111)
2 CHL00183 petJ cytochrome c553; 99.8 7.5E-19 1.6E-23 126.9 9.6 92 61-164 17-108 (108)
3 PF13442 Cytochrome_CBB3: Cyto 99.6 6.5E-15 1.4E-19 97.3 5.2 67 68-156 1-67 (67)
4 TIGR03872 cytochrome_MoxG cyto 99.5 5.4E-14 1.2E-18 105.5 10.0 110 34-160 10-122 (133)
5 PRK13621 psbV cytochrome c-550 99.5 3.5E-14 7.7E-19 109.5 9.1 101 66-167 62-164 (170)
6 COG3258 Cytochrome c [Energy p 99.5 7.9E-14 1.7E-18 113.6 8.8 127 34-168 116-260 (293)
7 TIGR03046 PS_II_psbV2 photosys 99.5 1.3E-13 2.8E-18 105.4 8.9 89 66-167 51-153 (155)
8 CHL00133 psbV photosystem II c 99.5 6E-13 1.3E-17 102.6 10.6 88 68-168 50-160 (163)
9 TIGR03874 4cys_cytochr c-type 99.4 3.6E-13 7.9E-18 101.9 7.6 79 70-165 33-125 (143)
10 TIGR03045 PS_II_C550 cytochrom 99.4 1.5E-12 3.1E-17 100.3 10.0 88 67-167 48-158 (159)
11 TIGR00782 ccoP cytochrome c ox 99.4 2.4E-12 5.1E-17 107.7 10.6 102 38-161 177-283 (285)
12 PRK13622 psbV cytochrome c-550 99.4 1.6E-12 3.5E-17 101.5 8.6 98 67-170 59-171 (180)
13 PRK13617 psbV cytochrome c-550 99.4 5.2E-12 1.1E-16 97.7 10.5 87 69-168 58-167 (170)
14 COG2863 Cytochrome c553 [Energ 99.4 1E-12 2.2E-17 96.5 5.4 80 66-164 20-106 (121)
15 PRK13618 psbV cytochrome c-550 99.4 5.5E-12 1.2E-16 97.3 9.6 87 68-167 50-159 (163)
16 PRK13619 psbV cytochrome c-550 99.3 3.5E-12 7.5E-17 97.2 7.8 87 67-166 48-156 (160)
17 PRK14486 putative bifunctional 99.3 8.6E-12 1.9E-16 104.8 8.2 79 67-161 212-292 (294)
18 PTZ00405 cytochrome c; Provisi 99.3 2E-11 4.4E-16 89.3 7.2 88 65-160 9-113 (114)
19 TIGR00782 ccoP cytochrome c ox 99.2 1.9E-11 4.2E-16 102.2 7.8 74 70-160 107-193 (285)
20 PF00034 Cytochrom_C: Cytochro 99.2 2.9E-12 6.3E-17 86.9 -0.5 75 70-160 1-91 (91)
21 TIGR02603 CxxCH_TIGR02603 puta 99.2 7.6E-11 1.7E-15 88.3 6.2 49 68-121 1-49 (133)
22 PTZ00048 cytochrome c; Provisi 99.1 2.2E-10 4.7E-15 84.0 8.1 86 67-160 12-113 (115)
23 PRK13620 psbV cytochrome c-550 99.1 5.6E-10 1.2E-14 88.5 10.9 88 68-168 102-212 (215)
24 PF14495 Cytochrom_C550: Cytoc 99.1 1.2E-10 2.6E-15 86.2 5.8 98 67-168 22-132 (135)
25 COG2010 CccA Cytochrome c, mon 99.1 1.3E-10 2.7E-15 87.4 5.4 78 67-161 48-129 (150)
26 COG3474 Cytochrome c2 [Energy 99.1 6.4E-10 1.4E-14 82.5 8.4 87 66-161 27-132 (135)
27 COG3245 CycB Cytochrome c5 [En 98.7 3.4E-08 7.3E-13 71.9 5.6 73 73-159 50-124 (126)
28 PRK14487 cbb3-type cytochrome 98.3 4.4E-06 9.6E-11 67.1 9.1 85 69-166 50-165 (217)
29 COG4654 Cytochrome c551/c552 [ 98.1 6.6E-06 1.4E-10 58.5 5.1 77 67-160 20-106 (110)
30 TIGR03791 TTQ_mauG tryptophan 97.6 0.00043 9.3E-09 58.4 8.7 22 143-164 262-283 (291)
31 PRK14486 putative bifunctional 97.5 0.00068 1.5E-08 57.2 9.0 92 69-160 50-187 (294)
32 PF09098 Dehyd-heme_bind: Quin 97.4 6.1E-05 1.3E-09 58.1 1.4 65 71-159 1-66 (167)
33 TIGR03806 chp_HNE_0200 conserv 97.4 0.0004 8.7E-09 59.2 6.0 78 70-159 213-317 (317)
34 TIGR00781 ccoO cytochrome c ox 97.4 0.0014 3E-08 53.2 8.7 82 69-163 49-161 (232)
35 PF09086 DUF1924: Domain of un 96.9 0.0005 1.1E-08 48.6 1.7 76 66-156 7-98 (98)
36 PF02433 FixO: Cytochrome C ox 96.6 0.016 3.4E-07 47.1 8.6 18 69-86 49-67 (226)
37 PF10643 Cytochrome-c551: Phot 96.4 0.0048 1E-07 49.4 4.2 66 67-159 166-232 (233)
38 PF14376 Haem_bd: Haem-binding 96.2 0.014 3E-07 43.9 5.8 83 69-159 32-136 (137)
39 COG2857 CYT1 Cytochrome c1 [En 96.1 0.0081 1.8E-07 49.6 4.5 40 111-163 172-216 (250)
40 PF02167 Cytochrom_C1: Cytochr 95.9 0.011 2.4E-07 47.9 4.3 23 66-88 11-33 (219)
41 TIGR02162 torC trimethylamine- 95.8 0.011 2.4E-07 51.8 3.9 58 70-160 321-378 (386)
42 COG3748 Predicted membrane pro 95.6 0.036 7.9E-07 47.4 6.2 76 69-160 323-404 (407)
43 KOG3453 Cytochrome c [Energy p 95.1 0.02 4.4E-07 41.4 2.8 83 66-159 5-107 (110)
44 PRK14485 putative bifunctional 95.1 0.061 1.3E-06 50.6 6.6 81 70-158 537-646 (712)
45 PRK15032 trimethylamine N-oxid 95.1 0.023 5E-07 49.8 3.6 58 70-160 318-375 (390)
46 COG2993 CcoO Cbb3-type cytochr 94.1 0.018 3.9E-07 45.9 0.6 83 71-164 53-164 (227)
47 PF09626 DHC: Dihaem cytochrom 93.7 0.066 1.4E-06 39.5 2.9 59 77-165 1-60 (120)
48 PF07635 PSCyt1: Planctomycete 90.2 0.47 1E-05 30.3 3.5 10 81-90 1-10 (59)
49 COG1858 MauG Cytochrome c pero 89.3 0.65 1.4E-05 40.5 4.7 20 69-88 219-240 (364)
50 PF06537 DUF1111: Protein of u 88.7 0.53 1.2E-05 42.6 3.9 22 67-88 360-382 (499)
51 KOG3052 Cytochrome c1 [Energy 86.8 0.24 5.1E-06 41.1 0.4 20 68-87 93-112 (311)
52 PF03150 CCP_MauG: Di-haem cyt 86.8 0.27 5.9E-06 37.8 0.8 20 69-88 4-32 (159)
53 COG3488 Predicted thiol oxidor 86.2 0.69 1.5E-05 40.0 3.0 21 67-87 348-369 (481)
54 COG3258 Cytochrome c [Energy p 84.9 2.2 4.8E-05 35.7 5.2 16 145-160 121-136 (293)
55 TIGR03791 TTQ_mauG tryptophan 80.9 1.1 2.3E-05 37.9 2.0 21 68-88 4-33 (291)
56 COG2857 CYT1 Cytochrome c1 [En 68.9 1.2 2.6E-05 36.8 -0.7 22 67-88 40-61 (250)
57 COG1858 MauG Cytochrome c pero 56.9 7.2 0.00016 34.1 1.9 21 68-88 60-89 (364)
58 PF06537 DUF1111: Protein of u 56.1 6.4 0.00014 35.8 1.4 21 73-94 64-85 (499)
59 PF11783 Cytochrome_cB: Cytoch 47.1 5.3 0.00012 31.1 -0.4 10 80-89 156-165 (166)
60 PF11845 DUF3365: Protein of u 46.8 5.8 0.00013 30.5 -0.3 9 78-86 146-154 (188)
61 TIGR03153 cytochr_NrfH cytochr 45.8 8 0.00017 28.7 0.4 17 71-87 95-111 (135)
62 PF08090 Enterotoxin_HS1: Heat 45.5 7.8 0.00017 21.9 0.2 11 78-88 19-29 (36)
63 PF09832 DUF2059: Uncharacteri 44.7 20 0.00043 22.7 2.1 19 142-160 15-33 (64)
64 PF08194 DIM: DIM protein; In 42.7 4.1 8.8E-05 23.7 -1.3 13 72-84 23-35 (36)
65 PF07627 PSCyt3: Protein of un 41.1 6.3 0.00014 28.1 -0.8 9 78-86 69-77 (101)
66 PF01322 Cytochrom_C_2: Cytoch 41.1 14 0.00031 26.5 1.1 9 78-86 111-119 (122)
67 COG2355 Zn-dependent dipeptida 39.7 25 0.00055 30.1 2.5 31 124-154 183-213 (313)
68 TIGR01905 paired_CXXCH_1 doubl 36.0 15 0.00033 21.7 0.4 13 78-90 6-18 (41)
69 PF03264 Cytochrom_NNT: NapC/N 33.4 7.3 0.00016 29.9 -1.6 7 80-86 66-72 (173)
70 PF09699 Paired_CXXCH_1: Doubl 32.1 15 0.00033 21.2 0.0 12 79-90 7-18 (41)
71 cd03527 RuBisCO_small Ribulose 31.4 68 0.0015 22.8 3.2 22 138-159 6-27 (99)
72 PHA01516 hypothetical protein 30.8 24 0.00053 24.2 0.8 22 131-152 49-70 (98)
73 PF13435 Cytochrome_C554: Cyto 30.5 39 0.00085 23.1 1.9 13 78-90 48-60 (130)
74 COG2010 CccA Cytochrome c, mon 30.2 65 0.0014 23.3 3.2 17 142-158 133-149 (150)
75 COG2896 MoaA Molybdenum cofact 28.4 73 0.0016 27.4 3.5 28 132-159 28-58 (322)
76 COG3488 Predicted thiol oxidor 27.3 30 0.00065 30.2 1.0 19 76-94 93-112 (481)
77 PRK11659 cytochrome c nitrite 26.3 29 0.00063 27.2 0.7 10 79-88 44-53 (183)
78 PF11829 DUF3349: Protein of u 24.9 78 0.0017 22.4 2.6 18 142-159 34-51 (96)
79 TIGR01904 GSu_C4xC__C2xCH Geob 24.6 30 0.00064 20.7 0.3 6 80-85 37-42 (42)
80 PF04120 Iron_permease: Low af 23.7 96 0.0021 23.2 3.0 45 111-168 75-119 (132)
81 PF10653 Phage-A118_gp45: Prot 23.3 61 0.0013 20.4 1.6 27 142-168 35-61 (62)
82 PRK10617 cytochrome c-type pro 23.0 47 0.001 26.6 1.3 8 80-87 86-93 (200)
83 cd01301 rDP_like renal dipepti 21.9 69 0.0015 27.2 2.2 43 110-154 176-218 (309)
84 PF03892 NapB: Nitrate reducta 21.7 28 0.0006 26.1 -0.2 12 78-89 69-80 (133)
85 COG5478 Predicted small integr 21.6 1.7E+02 0.0037 22.1 4.0 23 142-164 98-120 (141)
86 PLN02289 ribulose-bisphosphate 20.9 1.1E+02 0.0023 24.1 2.9 18 142-159 74-91 (176)
87 PF14537 Cytochrom_c3_2: Cytoc 20.7 45 0.00097 21.3 0.7 10 79-88 7-16 (80)
88 PF07583 PSCyt2: Protein of un 20.4 35 0.00075 27.4 0.1 9 78-86 174-182 (208)
89 PF15573 Imm27: Immunity prote 20.3 75 0.0016 26.2 2.0 28 142-169 225-252 (259)
No 1
>PRK13697 cytochrome c6; Provisional
Probab=99.82 E-value=7.5e-20 Score=132.35 Aligned_cols=90 Identities=34% Similarity=0.622 Sum_probs=72.1
Q ss_pred cCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGAR 143 (172)
Q Consensus 64 ~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~ 143 (172)
.+.+++...|+++|..+|++||+.+......++.+..+.+..++..+.+.+.+.+++|...||+|. ..
T Consensus 22 ~~~a~~~~~G~~ly~~~C~~CHg~g~~~~~~~p~l~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ 89 (111)
T PRK13697 22 PALAADAANGEQVFSANCASCHAGGKNLVNAGKTLKKADLEKYGMYSLEAITAQVTNGKNAMPAFK------------DR 89 (111)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCHHHHHhcCCCCHHHHHHHHHcCCCCCCCCc------------CC
Confidence 334467889999999999999996543333344444456666666678899999999999999997 68
Q ss_pred CCHHHHHHHHHHHHhhhhCCCC
Q 030717 144 LQDEDIKLLAQFVKSQADQGWP 165 (172)
Q Consensus 144 Lsd~ei~~VaaYl~~~~~~gw~ 165 (172)
||++|+++|++||.++.++||.
T Consensus 90 ls~~di~~l~~Yi~~~~~~~~~ 111 (111)
T PRK13697 90 LSPDQIEDVAAYVLEQAEKGWK 111 (111)
T ss_pred CCHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999994
No 2
>CHL00183 petJ cytochrome c553; Provisional
Probab=99.79 E-value=7.5e-19 Score=126.93 Aligned_cols=92 Identities=40% Similarity=0.685 Sum_probs=70.5
Q ss_pred ccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 030717 61 AVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTF 140 (172)
Q Consensus 61 a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~ 140 (172)
.+.++..++++.|++||..+|++||+.+.....+......+.+...+..+.+.+...+++|.+.||+|+
T Consensus 17 ~~~~~~~a~~~~G~~ly~~~Ca~CHg~g~~~~~P~~~~~~~~l~~~~~~~~~~i~~~i~~G~~~MP~f~----------- 85 (108)
T CHL00183 17 FSQPAFAADLDNGEQIFSANCAACHAGGNNVIMPEKTLKKDALEANSMNSIEAITYQVTNGKNAMPAFG----------- 85 (108)
T ss_pred cCCccccccHHHHHHHHHHHHHHHCCCCCCCCCCCcccCHHHHhhCcCCCHHHHHHHHHcCcccccccc-----------
Confidence 444556677899999999999999996433222221112334444445578899999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhhhhCCC
Q 030717 141 GARLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 141 ~~~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
..||++|+++|++||.++..++|
T Consensus 86 -~~Ls~~ei~~i~aYi~~~~~~~~ 108 (108)
T CHL00183 86 -GRLSDEDIEDVANYVLSQAEKGW 108 (108)
T ss_pred -CCCCHHHHHHHHHHHHHhhhcCC
Confidence 78999999999999999999998
No 3
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=99.55 E-value=6.5e-15 Score=97.31 Aligned_cols=67 Identities=40% Similarity=0.769 Sum_probs=53.3
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE 147 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ 147 (172)
++++.|+.||+.+|++||+.++.+ +.+.... ++.+.|...+.+|.+.||+|. ..||++
T Consensus 1 a~~~~G~~ly~~~C~~CH~~~~~g----p~l~~~~------~~~~~l~~~i~~g~~~Mp~~~------------~~ls~~ 58 (67)
T PF13442_consen 1 ADAAKGKALYEQNCASCHGPGGAG----PSLAGKD------WSPEELYNIIRNGRGGMPPFG------------GQLSDE 58 (67)
T ss_dssp -HHHHHHHHHHHHTHHHHGTGSSS----STSTHHH------HHHHHHHHHHHHTBTTBSCTT------------TTSTHH
T ss_pred CcHHHHHHHHHhHhHHhcCCCccC----ccchhhh------hhHHHHHHHHHhCcCCCCCCC------------CCCCHH
Confidence 367899999999999999955442 2222112 246889999999999999997 689999
Q ss_pred HHHHHHHHH
Q 030717 148 DIKLLAQFV 156 (172)
Q Consensus 148 ei~~VaaYl 156 (172)
|+++|++||
T Consensus 59 e~~~l~~yi 67 (67)
T PF13442_consen 59 EIEALAAYI 67 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 999999997
No 4
>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic. This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.
Probab=99.54 E-value=5.4e-14 Score=105.54 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=71.3
Q ss_pred cccccchh-hhHHHHHHHhHHHHhhhhcccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-CCCH
Q 030717 34 LSMELELQ-KYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTE 111 (172)
Q Consensus 34 ~~~~~~~~-~mr~l~~l~~~l~~~~~~~a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~ 111 (172)
.|+++... .++...+........ ..+-......++.|+++|+.+|++|||.++.+.. ++.+ ....+.+. ....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~---~np~~~~~~~~a~G~~ly~~~CAaCHG~~g~G~~-gP~L-~~~~~~~~~~~~~ 84 (133)
T TIGR03872 10 EPLDLSGAKEGRDTPAVKQFLETG---ENPYNEDAEALKKGESLFATACSGCHGHLAEGKL-GPGL-NDDYWTYPKNTTD 84 (133)
T ss_pred CccCCCcchhhhhhHHHHHHHhCC---cccccCCHHHHHHHHHHHHHhhHHhCCCCCCCCC-CCCC-cCcccccCCcccH
Confidence 56666654 666544333222221 1222233556789999999999999998877532 2222 11222221 1245
Q ss_pred HHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 112 DEIYHVTYFGKG-RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 112 ~~l~~~i~~g~~-~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
+.+++.+..|.. .||+|. ..|+++||++|++||+++.
T Consensus 85 ~~l~~~i~~G~~g~Mp~~~------------~~LsdeeI~aLaaYI~sl~ 122 (133)
T TIGR03872 85 KGLFETIFGGANGMMGPQY------------GNLTLDEMLQIMAWIRHLY 122 (133)
T ss_pred HHHHHHHHcCCCCCCcccc------------cCCCHHHHHHHHHHHHHhC
Confidence 568888888854 799997 7899999999999999985
No 5
>PRK13621 psbV cytochrome c-550; Provisional
Probab=99.54 E-value=3.5e-14 Score=109.54 Aligned_cols=101 Identities=26% Similarity=0.458 Sum_probs=72.2
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ 145 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls 145 (172)
.+.++..|+++|+.+|++||..+++.+.++.++...+|.+. ....+.+...+..+++.|+..+..+...+.......||
T Consensus 62 s~~d~~~G~~lF~~~Ca~CH~gG~n~v~p~ktL~~~~L~~a-~p~rd~I~~LV~~iknPms~kg~~~~~~~~mps~~~LS 140 (170)
T PRK13621 62 SPEQLTDGKQLFDSNCLNCHVGGATLPNPNVSLSLKDLRGA-TPPRDNIAALVAYQRDPMSYDGSEESYGCRQVPEDWMT 140 (170)
T ss_pred CHHHHHhHHHHHHHHHHHhccCCCCCcCCCCCCCHHHHhcC-CCchHHHHHHHHHhhCCCCCCcccccccccCCccCCCC
Confidence 35678999999999999999988888888999989999877 33455555555555555554321110010001126799
Q ss_pred HHHHHHHHHHHHhhhh--CCCCCc
Q 030717 146 DEDIKLLAQFVKSQAD--QGWPKI 167 (172)
Q Consensus 146 d~ei~~VaaYl~~~~~--~gw~~~ 167 (172)
++|+++|++||..++. .+|.+-
T Consensus 141 deEL~aIAaYLL~qA~~~~~Wg~~ 164 (170)
T PRK13621 141 DEELQNLAAFILRAAQKAPGWGTE 164 (170)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCc
Confidence 9999999999999874 899864
No 6
>COG3258 Cytochrome c [Energy production and conversion]
Probab=99.50 E-value=7.9e-14 Score=113.60 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=83.0
Q ss_pred cccccchhhhHHHHHHHhHHHHhhh---------hccc-ccCchhhHHhHHHHHHccCccccCCCCCCCCC----CCCcc
Q 030717 34 LSMELELQKYDTYNVLCLPVSLGFF---------HAAV-SLAQTVDIQKGVSLFRQACIGCHDGGGNVIQP----GATLF 99 (172)
Q Consensus 34 ~~~~~~~~~mr~l~~l~~~l~~~~~---------~~a~-~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~----~~~~~ 99 (172)
+|++..+.+|+-+.....-+..... .... ....++|+.+|++||+.+|+.|||++|.|... +....
T Consensus 116 k~~paDspEmkAmlaY~kWL~~~~~v~~kl~g~g~~kva~~~~aadp~rG~kly~eqCa~CHg~~G~G~k~~~~~~~~y~ 195 (293)
T COG3258 116 KPLPADSPEMKAMLAYMKWLKEQAPVGVKLPGRGYPKVAPPLKAADPVRGKKLYAEQCAACHGADGQGLKNDDEQGAGYL 195 (293)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcccccCCCCCCccCccccCCCchhHHHHHHHHHHHhcCCCCCccccCcCCCccee
Confidence 7778888888866555444433211 1111 22335689999999999999999999887654 66778
Q ss_pred chhhhcCCCCC----HHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717 100 LKDLQRNGVDT----EDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIE 168 (172)
Q Consensus 100 ~p~l~~~~~~~----~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~ 168 (172)
+|.||+..+.+ ...+.....+=+..||--. -.....|||+|.+||++|+.++..+.-|++-
T Consensus 196 fPpLwG~dSfn~GagMari~t~A~Fi~~nMP~g~--------~~~~P~Lsd~dA~DiAay~~~~pRp~~pgl~ 260 (293)
T COG3258 196 FPPLWGPDSFNDGAGMARINTLARFIKANMPYGF--------SGTNPILSDQDAWDIAAYVNSQPRPEGPGLV 260 (293)
T ss_pred cCcccCCcccCCccchhhHHHHHHHHHhcCCCCc--------CccCCccChHHHHHHHHHHcCCCCCCCCCcc
Confidence 99999864332 2222222233345787432 1112459999999999999999766555543
No 7
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=99.49 E-value=1.3e-13 Score=105.39 Aligned_cols=89 Identities=28% Similarity=0.462 Sum_probs=67.3
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCC--CCHHHHHHHHHhCCC----------CCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGV--DTEDEIYHVTYFGKG----------RMPGFGEKCT 133 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~--~~~~~l~~~i~~g~~----------~MP~~~~~~~ 133 (172)
.+.++.+|++||+.+|++||+.+++.+.++.++...+|.+... ...+.|.+.++++.. .||++
T Consensus 51 s~~d~~~G~~lF~~~Ca~CH~gG~n~~~p~~~L~~~~L~~atp~Rd~I~~Lv~~iknP~s~kG~~~~~~~~mp~~----- 125 (155)
T TIGR03046 51 TPEQLTDGKNLFESNCLNCHVGGATLPNPNVSLSLKDLKGATPPRDTIQSLVAYQRDPMSYDGSEESYGCRPVPE----- 125 (155)
T ss_pred CHHHHHhHHHHHHHHHHHhccCCCCCcCCCCCCCHHHHhcCCCchHHHHHHHHHhhCCcccCcccccccccCCcc-----
Confidence 3568999999999999999998888788888888888876531 123445555544321 34554
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCCc
Q 030717 134 PRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPKI 167 (172)
Q Consensus 134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~~ 167 (172)
..|||+|+++|++||..++ ..+|.+-
T Consensus 126 --------~~LsdeEL~aIAaYLl~qa~~~~~Wg~~ 153 (155)
T TIGR03046 126 --------DWMDDEEVENLAAFILRAAQKAPGWGVE 153 (155)
T ss_pred --------cCCCHHHHHHHHHHHHHhhhhcCCCCCC
Confidence 5799999999999999987 8899763
No 8
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=99.46 E-value=6e-13 Score=102.62 Aligned_cols=88 Identities=23% Similarity=0.352 Sum_probs=65.2
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCCC------------------CCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGKG------------------RMPG 127 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~~------------------~MP~ 127 (172)
+++++|+++|+.+|+.||..+....++...+..+.|...+ ..+.+.|+..|+++.. .||+
T Consensus 50 ~~~~~Gk~lF~~~CaaCH~~G~~~~~p~vgl~l~~L~~A~~~r~~~~~Lv~~iknP~~ydg~~~i~~~~~~~K~~~~MPa 129 (163)
T CHL00133 50 EQVKRGKRLFNASCGACHVGGITKTNPNVGLDPEALSLATPPRDNIEALVDYMKNPTTYDGLESIAEIHPSIKSADIFPK 129 (163)
T ss_pred HHHHHHHHHHHhhHHHhCCCCCCCCCCCCCCCHHHHhhcCCCcccHHHHHHHHhCcccccchHHHHHhhcccCccccCCC
Confidence 4688999999999999997554444444455556665432 3467788888777521 4999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCcC
Q 030717 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKIE 168 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~~ 168 (172)
| +.|||+|+.+|++||..+. ..+|.+.+
T Consensus 130 ~-------------~~LsdeEL~aVAaYIl~q~~~~~~~wgggk 160 (163)
T CHL00133 130 M-------------RSLTDEDLYAIAGHILLQPKIVSEKWGGGK 160 (163)
T ss_pred C-------------CCCCHHHHHHHHHHHHhcccccccccCCCc
Confidence 9 5799999999999999764 77898753
No 9
>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related. This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.
Probab=99.44 E-value=3.6e-13 Score=101.86 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=61.7
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-CCCCHHHHHHHHHhCCC--------CCCCCCCCCCCCCCCCC
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-GVDTEDEIYHVTYFGKG--------RMPGFGEKCTPRGQCTF 140 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~~~~~~l~~~i~~g~~--------~MP~~~~~~~~~~~~~~ 140 (172)
.-.|++||..+|++|||.+|.|... .|.|... ...+...++++|.+|+. .||+|.
T Consensus 33 ~~~G~~lY~~~CAaCHG~dG~G~~~-----~P~Lans~v~~s~~nli~vIl~G~~~~~~~~~~~MPaF~----------- 96 (143)
T TIGR03874 33 TYSGYRRYHSECHVCHGPDGMGSTY-----APALKDSVKRMSYGDFLGVVANGRQNVSAAQNNVMPAFG----------- 96 (143)
T ss_pred cccHHHHHHHHHHHhCCCCCCCCCC-----CCCCCCccccCCHHHHHHHHHhCCCCCCCCCCCCCCCcc-----------
Confidence 4579999999999999999886442 3443311 11478899999999976 599998
Q ss_pred CCCCCHH-HHHHHHHHHHhhh----hCCCC
Q 030717 141 GARLQDE-DIKLLAQFVKSQA----DQGWP 165 (172)
Q Consensus 141 ~~~Lsd~-ei~~VaaYl~~~~----~~gw~ 165 (172)
..|+|+ ||.+|+.||+..+ .+|.|
T Consensus 97 -~~LsD~~eIa~L~~YLR~~~~g~~~~~~p 125 (143)
T TIGR03874 97 -DNPNVMCYLDDLYVYLRARGTDALGRGRP 125 (143)
T ss_pred -ccCCcHHHHHHHHHHHHhccCCCcCCCCC
Confidence 789997 9999999999876 44555
No 10
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=99.42 E-value=1.5e-12 Score=100.29 Aligned_cols=88 Identities=25% Similarity=0.372 Sum_probs=65.6
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCC------------------CCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGK------------------GRMP 126 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~------------------~~MP 126 (172)
.+++++|+++|+.+|++||..+....++...+..+.+... ...+.+.|+..++++. ..||
T Consensus 48 ~~~~~~Gk~lF~~~Ca~CH~~G~~~~~p~vgl~l~~L~~A~~~r~~v~~Lv~~iknP~~~dg~~~~~~~hp~~k~~~~mP 127 (159)
T TIGR03045 48 EEQVKRGKRLFNTACGTCHVGGITKTNPNVGLDPEALALATPPRDNVEALVDYMKNPTSYDGEESIAELHPSIRSADIFP 127 (159)
T ss_pred hHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhhHHhcCCCccCHHHHHHHHhCcccccccchhhhcccccCcccccC
Confidence 4578999999999999999755454455555556666654 2456888999888773 1477
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh--hC-CCCCc
Q 030717 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQ-GWPKI 167 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~-gw~~~ 167 (172)
.+ +.||++|+.+|++||..++ .. .|.+.
T Consensus 128 ~~-------------~~LsdeEL~avAaYIl~q~~~~~~~wgg~ 158 (159)
T TIGR03045 128 KM-------------RNLTDEDLRLIAGHILVQPKVVGEKWGGG 158 (159)
T ss_pred Cc-------------CCCCHHHHHHHHHHHHHhcccccccCCCC
Confidence 76 5799999999999999986 33 48764
No 11
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=99.40 E-value=2.4e-12 Score=107.68 Aligned_cols=102 Identities=27% Similarity=0.371 Sum_probs=71.6
Q ss_pred cchhhhHHHHHHHhHHHHhhhhcccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhh----cCCCCCHHH
Q 030717 38 LELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ----RNGVDTEDE 113 (172)
Q Consensus 38 ~~~~~mr~l~~l~~~l~~~~~~~a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~----~~~~~~~~~ 113 (172)
++..+++.+...+..+.. .....+..+++|+.||..+|++|||.+|.+.... ..|+|. .++. +...
T Consensus 177 LsdeeI~aVaaYv~sl~~------~~~~~~~~~~~G~~lf~~~Ca~CHG~~G~G~~~~---gaP~L~~~~~~y~~-~~~~ 246 (285)
T TIGR00782 177 LEEADIKDVASYVMSLSS------GKPKDEALAAKGQELFADNCTTCHGEDGKGLQEL---GAPNLTDDVWLYGG-DLKT 246 (285)
T ss_pred cChHHHHHHHHHHHHhcc------CCccchhHHHHHHHHHhccchhhCCCCCCCCCCC---CCCCCCcchhhcCC-CHHH
Confidence 555666665555444332 1122334578999999999999999988764321 134444 2322 4778
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 114 IYHVTYFGKG-RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 114 l~~~i~~g~~-~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
+.+.+++|+. .||+|. ..||++||++|++||.++..
T Consensus 247 i~~~i~~G~~g~Mp~~~------------~~Ls~~ei~~La~Yv~sL~~ 283 (285)
T TIGR00782 247 ITTTITNGRGGVMPAWG------------PRLSEAQIKALAAYVHSLGG 283 (285)
T ss_pred HHHHHHhCCCCCCCCcc------------ccCCHHHHHHHHHHHHHhcC
Confidence 8888999864 899997 78999999999999999853
No 12
>PRK13622 psbV cytochrome c-550; Provisional
Probab=99.39 E-value=1.6e-12 Score=101.48 Aligned_cols=98 Identities=30% Similarity=0.443 Sum_probs=70.4
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC---------CCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG---------RMPGFGEKCTPR 135 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~---------~MP~~~~~~~~~ 135 (172)
.+++.+|+++|..+|++||+.+++.+.+..++...++.+. +..+.+.|+..++++.. .||...
T Consensus 59 ~~~~~~G~~lF~~~Ca~CH~~G~ni~~P~~tLk~~aL~~a~p~rdnv~AIv~yLk~p~tYdg~~~~~e~~p~~~------ 132 (180)
T PRK13622 59 EAQLAKGKKLFNRACAQCHVGGQTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLLEYHPNTQ------ 132 (180)
T ss_pred HHHHHHHHHHHHhhhHHhccCCCCCcCCCcccCHHHHcCCCCCcccHHHHHHHHhcccccCCccchhhccccch------
Confidence 3467899999999999999887777777777777777643 45567888888877641 133311
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHhhhh--CCCCCcCCC
Q 030717 136 GQCTFG--ARLQDEDIKLLAQFVKSQAD--QGWPKIESM 170 (172)
Q Consensus 136 ~~~~~~--~~Lsd~ei~~VaaYl~~~~~--~gw~~~~~~ 170 (172)
-.-.+. +.|||+||.+|+.||..++. ++|...++.
T Consensus 133 ~~~~~p~~~~LsdeEI~~VA~yIl~qa~~~~~Wg~~k~~ 171 (180)
T PRK13622 133 LLSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKNE 171 (180)
T ss_pred hccccccccCCCHHHHHHHHHHHHhCcccCCccCCCCCC
Confidence 000000 47999999999999999986 899876653
No 13
>PRK13617 psbV cytochrome c-550; Provisional
Probab=99.37 E-value=5.2e-12 Score=97.73 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=66.8
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhC---C---------C------CCCCC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFG---K---------G------RMPGF 128 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g---~---------~------~MP~~ 128 (172)
++.+|+++|+.+|..||..++...++...+....|... -..+.+.|+..++++ + . .||.+
T Consensus 58 ~~~~G~~~F~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~p~r~nv~aLv~yikdP~sydg~~s~~e~~P~~~~~~imP~~ 137 (170)
T PRK13617 58 EIKAGRKVFNTSCGTCHAGGITKTNQNVGLDPETLALATPARDNVDALVDYLKDPTSYDGEYSIADLHPSMRSADLYPAM 137 (170)
T ss_pred HHHHHHHHHHcchhhhccCCCcCCCCCcCCCHHHHhccCCCCCCHHHHHHHHhChHhhcchhhccccCccccccccCccc
Confidence 57899999999999999877765555555556666432 235789999999887 2 1 57777
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCcC
Q 030717 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKIE 168 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~~ 168 (172)
+.|||+|+++|++||..+. .++|.+.+
T Consensus 138 -------------~~LsdeeL~alAayLl~~~k~~~~~wgggk 167 (170)
T PRK13617 138 -------------RDLNDEDLRLMAGYILVAPKVQGTQWGGGK 167 (170)
T ss_pred -------------CCCCHHHHHHHHHHHHhcccccccccCCce
Confidence 5799999999999999983 67898653
No 14
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=99.36 E-value=1e-12 Score=96.53 Aligned_cols=80 Identities=28% Similarity=0.314 Sum_probs=61.6
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCCC---CCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGKG---RMPGFGEKCTPRGQCT 139 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~~---~MP~~~~~~~~~~~~~ 139 (172)
...+++.|+.+|.+.|++|||.+|++.. ..+|.|.+. +.++|++.+ +.|.+ .|-+..
T Consensus 20 a~~~a~~G~~~~~~~Ca~CHG~~g~~~~----~~~P~Lagq---~~~yl~~~L~a~k~g~r~~~vM~~~a---------- 82 (121)
T COG2863 20 AAADAALGKALAAQSCAACHGADGNSPA----PGYPKLAGQ---SEAYLEKQLKAYKDGKRPGPVMNAIA---------- 82 (121)
T ss_pred hhhhHHHHHHhhcchhhhccCCCCCCcc----CCCCCcCCC---CHHHHHHHHHHHHcCCCCcchHHHHH----------
Confidence 5678899999998789999999988533 337888765 677777644 45543 577776
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-hCCC
Q 030717 140 FGARLQDEDIKLLAQFVKSQA-DQGW 164 (172)
Q Consensus 140 ~~~~Lsd~ei~~VaaYl~~~~-~~gw 164 (172)
..|||+||.+|++|+.+++ ..+|
T Consensus 83 --~~LsD~Di~~lAa~~a~~~~~~~~ 106 (121)
T COG2863 83 --SGLSDEDIADLAAYYAAQKASAPE 106 (121)
T ss_pred --HhCCHHHHHHHHHHHHhCCCCCCC
Confidence 7899999999999999985 3344
No 15
>PRK13618 psbV cytochrome c-550; Provisional
Probab=99.35 E-value=5.5e-12 Score=97.35 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=62.6
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCCC------------------CCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGKG------------------RMPG 127 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~~------------------~MP~ 127 (172)
+++++|+++|+.+|++||..+....++......+.+.+.. ..+.+.+...++++.. .||.
T Consensus 50 ~~~~~G~~lF~~~Ca~CH~~G~~~~~p~~~l~~~~La~a~p~rd~v~~l~~yik~P~~~Dg~~~~~~~h~~ik~~~~mP~ 129 (163)
T PRK13618 50 KQVKEGKRLFNYACAQCHAGGVTKTNQNVGLEPEALALATPNRDNIEGLVDYMKNPTTYDGEEEISEIHPSIKSADIFTA 129 (163)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCCcCCChhhhccCCCCccCHHHHHHHHhCchhccccchhcccccccCccccCCC
Confidence 4789999999999999996443444443344445555432 2367888887755521 5777
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCc
Q 030717 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKI 167 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~ 167 (172)
+ +.|||+|+.+|++||..+. .++|.+.
T Consensus 130 ~-------------~~Lsd~eL~ava~yll~~~~~~~~~wggg 159 (163)
T PRK13618 130 M-------------RNLTDKDLEAIAGHILVQPKILGDKWGGG 159 (163)
T ss_pred C-------------CCCCHHHHHHHHHHHHhccCCcccccCCc
Confidence 7 5799999999999999875 6788765
No 16
>PRK13619 psbV cytochrome c-550; Provisional
Probab=99.35 E-value=3.5e-12 Score=97.21 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=71.1
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCCC------------------CCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGKG------------------RMP 126 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~~------------------~MP 126 (172)
.+++.+|++||+.+|+.||..+++.+++...+...+|.+.. ..+.+.|+..++++.. .||
T Consensus 48 ~~d~~~GkklF~~~Ca~CH~gG~nk~~Pnl~L~~~~L~~atP~RdnV~aLVdymk~PtsyDG~~~~a~~hpsi~~~di~P 127 (160)
T PRK13619 48 SKQITNGQRLFVQECTQCHLQGKTKTNNNVSLGLEDLAGAEPPRDNVLALVDYLKHPTSYDGEDDYSELHPNVSRPDIFP 127 (160)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCCcCCCCCcCHHHHHhcCCCcccHHHHHHHHhCCcccccchhhhhhccccccccccc
Confidence 45789999999999999999888888888888888888753 5678888888877632 466
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCC
Q 030717 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA--DQGWPK 166 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~ 166 (172)
.+ +.|||+|+.+|+.||..++ ..+|.+
T Consensus 128 ~m-------------r~LtdedL~~iAg~IL~~pk~~~~WGG 156 (160)
T PRK13619 128 EL-------------RNFTEDDLYDVAGYMLVAPKLDERWGG 156 (160)
T ss_pred cc-------------CCCCHHHHHHHHHHHHhccccccccCC
Confidence 65 5799999999999998764 668875
No 17
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Probab=99.29 E-value=8.6e-12 Score=104.81 Aligned_cols=79 Identities=25% Similarity=0.468 Sum_probs=58.9
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC--CCCCCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG--RMPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~--~MP~~~~~~~~~~~~~~~~~L 144 (172)
..++.+|+++|+.+|++|||.+|.+... . .+.+...+....+.+++.+.+|.. .||+|+ ..|
T Consensus 212 ~~~~~~G~~ly~~~Ca~CHg~~g~G~~g-p---~p~~~~~~~~~~~~~~~~I~~G~~~~~MP~f~------------~~L 275 (294)
T PRK14486 212 VAAIAKGKALYDANCAACHGDEAQGQEG-V---ALNDIDDGDLPDAAYFGMIKGGSDAKGMPGFG------------GDL 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCC-C---CccccccCCCcHHHHHHHHHcCCCcCCCCccc------------ccC
Confidence 4567899999999999999988775322 1 122222222245667888898876 699997 679
Q ss_pred CHHHHHHHHHHHHhhhh
Q 030717 145 QDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 145 sd~ei~~VaaYl~~~~~ 161 (172)
|++|+++|++||+++..
T Consensus 276 sdeei~~LaaYV~sl~~ 292 (294)
T PRK14486 276 SDDDIWAIVAYIRSQKA 292 (294)
T ss_pred CHHHHHHHHHHHHhccC
Confidence 99999999999999854
No 18
>PTZ00405 cytochrome c; Provisional
Probab=99.25 E-value=2e-11 Score=89.30 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred CchhhHHhHHHHHHccCccccCCCCCC-CCCCCCccc---------hh------hhcC-CCCCHHHHHHHHHhCCCCCCC
Q 030717 65 AQTVDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFL---------KD------LQRN-GVDTEDEIYHVTYFGKGRMPG 127 (172)
Q Consensus 65 a~~~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~---------p~------l~~~-~~~~~~~l~~~i~~g~~~MP~ 127 (172)
...+|+++|+++|..+|.+||.....+ ...|+.+.. +. +... ..|+.+.|...+.++...+|+
T Consensus 9 ~~~gd~~~G~~lF~~~C~aCH~~~~~~~~~vGP~L~gv~gR~~g~~~~~~YS~al~~~g~~wd~~~L~~~l~~P~~~~pg 88 (114)
T PTZ00405 9 LPPGDAERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFMPG 88 (114)
T ss_pred CCccCHHHHHHHHHhhhHhhCCCCCCCCCCcCCCccccccCccccccCccccHHHHhccCcCCHHHHHHHHHCHHhhCCC
Confidence 345788999999988899999743211 112222110 00 0111 137899999999998776663
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
-.| .|.+..+++|+.+|++||.++.
T Consensus 89 t~M--------~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 89 TKM--------SFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred CCC--------CCCCCCCHHHHHHHHHHHHHhc
Confidence 321 1125678999999999999875
No 19
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=99.25 E-value=1.9e-11 Score=102.19 Aligned_cols=74 Identities=34% Similarity=0.575 Sum_probs=59.2
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHHHHHHhCC----------CCCCCCCCCCCCCC
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIYHVTYFGK----------GRMPGFGEKCTPRG 136 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~~~i~~g~----------~~MP~~~~~~~~~~ 136 (172)
...|++||..+|++|||.++.+.. + +|+|.+.. ..+.+.+...+++|. +.||+|.
T Consensus 107 ~~~G~~lf~~~Ca~CHG~~g~G~~-g----~P~L~~~~~~~g~~~~~i~~~i~~G~~~~~~~~~~~~~Mp~~~------- 174 (285)
T TIGR00782 107 RNAGAAIFRTWCAQCHGSGAGGAK-G----FPNLLDNDWLWGGTLEGIHTTIKHGIRDPDDGDTYVGEMPAFG------- 174 (285)
T ss_pred HHHHHHHHHHHhHHhCCCCCCCCC-C----CCCCCCCccccCCCHHHHHHHHHhCccCcccCCcCCCCCCccc-------
Confidence 478999999999999998877532 2 35554321 126888999999996 4799997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 137 QCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 137 ~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..||++||++|++||.++.
T Consensus 175 -----~~LsdeeI~aVaaYv~sl~ 193 (285)
T TIGR00782 175 -----PLLEEADIKDVASYVMSLS 193 (285)
T ss_pred -----cccChHHHHHHHHHHHHhc
Confidence 7899999999999999986
No 20
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=99.18 E-value=2.9e-12 Score=86.93 Aligned_cols=75 Identities=31% Similarity=0.338 Sum_probs=44.9
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHh---------CC------CCCCCCCCCCC
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYF---------GK------GRMPGFGEKCT 133 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~---------g~------~~MP~~~~~~~ 133 (172)
+++|++||..+|++||+.++.+...+. .|+|++.. ......+...+.+ .. ..||.+
T Consensus 1 a~~G~~l~~~~C~~CH~~~~~~~~~~~---~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 72 (91)
T PF00034_consen 1 AARGKELFQANCAACHGADGNGDGGGP---GPDLTGIGKRYSYDWIGRYITNPEAISPPAHMPDAMPMFPMMPMP----- 72 (91)
T ss_dssp HHHHHHHHHHHTTTTHBTSTTSSSSST---SHBHTTHTHHBTTHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ChhHHHHHhCcChhcCCCCCcCCcccc---CccccCccccchHHHHHHHHHHHhhhccccchhhccCcccCCccc-----
Confidence 478999998899999998876544332 34444321 0011111111110 00 134443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 134 PRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..||++|+++|++||++++
T Consensus 73 --------~~ls~~e~~~l~ayl~slk 91 (91)
T PF00034_consen 73 --------KILSDEEIADLAAYLRSLK 91 (91)
T ss_dssp --------HTSSHHHHHHHHHHHHHTS
T ss_pred --------CCCCHHHHHHHHHHHHHhC
Confidence 2699999999999999874
No 21
>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type. This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).
Probab=99.15 E-value=7.6e-11 Score=88.26 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=34.1
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG 121 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g 121 (172)
+|+++|+++|..+|++||+.+|.+... .|+|.+.+..+.+.|.+.|.++
T Consensus 1 gd~~~G~~~f~~~C~~CH~~~g~g~~~-----gP~L~~~~~~~~~~ll~~I~~P 49 (133)
T TIGR02603 1 GDAEKGKAVYAQRCYVCHRIGGEGVDV-----GPDLTGVGTKGVEYLLEAILDP 49 (133)
T ss_pred CCHHHHHHHHHhHHHHhCCCCCCCCcc-----CCCccccccCCHHHHHHHHhCc
Confidence 367899999988899999988764322 3555543334677777666554
No 22
>PTZ00048 cytochrome c; Provisional
Probab=99.14 E-value=2.2e-10 Score=83.97 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=56.0
Q ss_pred hhhHHhHHHHHHccCccccCCCCCC-CCCCCCccc--------hh------hhc-CCCCCHHHHHHHHHhCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFL--------KD------LQR-NGVDTEDEIYHVTYFGKGRMPGFGE 130 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~--------p~------l~~-~~~~~~~~l~~~i~~g~~~MP~~~~ 130 (172)
.+++++|+++|.++|.+||..++.+ ...|+.+.. +. +.. ...|+.+.|...+.++...+|.-.|
T Consensus 12 ~~~~~~G~~~f~~~C~~CH~~~~~g~~~~GP~L~Gi~gR~~g~~~~~ys~~~~~~g~~wt~~~L~~~l~~P~~~~pgt~M 91 (115)
T PTZ00048 12 EGDAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGSADFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPGTKM 91 (115)
T ss_pred cccHHHHHHHHHhhhhhcCCCcCCCCCCcCCcccccccccccCCCCccchhhhhcccccCHHHHHHHHhCcCccCCCCcc
Confidence 4678899999988999999765322 111221111 00 000 1147889999999999887665431
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 131 KCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 131 ~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
.|.+..+++|+.+|++||+++.
T Consensus 92 --------~~~gl~~~~~~~~liaYL~s~~ 113 (115)
T PTZ00048 92 --------VFAGIKKEKERADLIAYLKEAS 113 (115)
T ss_pred --------CcCCCCCHHHHHHHHHHHHHhc
Confidence 1124557999999999999874
No 23
>PRK13620 psbV cytochrome c-550; Provisional
Probab=99.14 E-value=5.6e-10 Score=88.50 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=62.7
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC------------------CCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG------------------RMPG 127 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~------------------~MP~ 127 (172)
.++++|+++|+..|+.||..+....++...+....+... ...+.+.|+..++++.. .||.
T Consensus 102 eq~~~GkqLF~~~Ca~CHVgG~Tktnp~vgpdLt~LaaAtppRdn~e~Lv~wLkdP~sydg~~siae~HPs~~s~d~mP~ 181 (215)
T PRK13620 102 KQVAEGKQLFAYACGQCHVGGITKTDPNVGLDPEALALATPPRDSVESLVDYLHNPTTYDGEREISELHPSTKSTDIFPK 181 (215)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCHHHHhccCCCCCCHHHHHHHHhCccccCCcchhhhcCccccccccccc
Confidence 468899999999999999533243333333334444321 23578999999877632 6888
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCcC
Q 030717 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKIE 168 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~~ 168 (172)
+ +.|||+|+.+|+.||.-+. .+.|.+.+
T Consensus 182 ~-------------r~LtdedL~aIa~~IL~qpki~~~~WGGgk 212 (215)
T PRK13620 182 M-------------RNLTEDDLVAISGHILLQPKIVGTKWGGGK 212 (215)
T ss_pred c-------------CCCCHHHHHHHHHHHhccccccccccCCce
Confidence 8 5799999999999999875 66887653
No 24
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=99.12 E-value=1.2e-10 Score=86.21 Aligned_cols=98 Identities=22% Similarity=0.377 Sum_probs=69.3
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCC---------CCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKG---------RMPGFGEKCTPR 135 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~---------~MP~~~~~~~~~ 135 (172)
..++.+|++||+.+|+.||..+...+++...+...+|++. ...+.+.|+..++++.. .-|... .-
T Consensus 22 ~~q~~~GkrLF~~~C~~CH~GG~TktNpnV~L~le~L~~AtPpRDNi~~LVdYmk~PtsYDG~~~i~e~hp~~~----s~ 97 (135)
T PF14495_consen 22 PEQLKRGKRLFNASCAQCHVGGITKTNPNVSLSLEDLAGATPPRDNIEALVDYMKNPTSYDGEESISELHPSIK----SA 97 (135)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCBTTSTTSBSSHHHHHTSSS--SSHHHHHHHHHS-B-TTSSSBGTTTS-STT----CT
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccCCCCCCcCHHHHccCCCCcccHHHHHHHhhCCCCcCCchhHHHhCcCcc----cc
Confidence 4678999999999999999887777888888888888865 36689999999988732 223321 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhh--hCCCCCcC
Q 030717 136 GQCTFGARLQDEDIKLLAQFVKSQA--DQGWPKIE 168 (172)
Q Consensus 136 ~~~~~~~~Lsd~ei~~VaaYl~~~~--~~gw~~~~ 168 (172)
..|...+.|||+|+.+|+.||..++ ..+|.+-+
T Consensus 98 di~p~mr~ltdddL~~iAg~IL~~pk~~~~WGggk 132 (135)
T PF14495_consen 98 DIFPKMRNLTDDDLYAIAGYILRQPKVAGGWGGGK 132 (135)
T ss_dssp TTSGGGTS--HHHHHHHHHHHHHHHHHHCGCCTCT
T ss_pred hhhHhhcCCCHHHHHHHHHHHHhcccccCCcCCCc
Confidence 1122236799999999999999764 66698653
No 25
>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]
Probab=99.10 E-value=1.3e-10 Score=87.39 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=55.4
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHh----CCCCCCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF----GKGRMPGFGEKCTPRGQCTFGA 142 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~----g~~~MP~~~~~~~~~~~~~~~~ 142 (172)
..+...|+++|..+|+.|||.+.. ..+.....|.|++. ..+.+...+.+ +...||.|+ .
T Consensus 48 ~~~~~~G~~~f~~~C~~CHg~~~~--g~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~mp~~~------------~ 110 (150)
T COG2010 48 AAARGAGLALFLGNCAACHGPNLG--GAGPLLDGPALAGG---DPPYIVWTILHGTRGGWGEMPAFA------------D 110 (150)
T ss_pred HHHHHHHHHHhcccchhccCCCCC--CCCCcCcchhhhCC---CcchhhhHHhhhccCCCCcCchHH------------H
Confidence 346889999999999999998722 11222335667654 23333333333 567999996 6
Q ss_pred CCCHHHHHHHHHHHHhhhh
Q 030717 143 RLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~~~~ 161 (172)
.|+++|+++|++|+.+...
T Consensus 111 ~l~~~~~~~va~yv~~~~~ 129 (150)
T COG2010 111 TLSDEQIAAVAAYVMPDLP 129 (150)
T ss_pred hcCcHHHHHHHHHHHHhhc
Confidence 8999999999999998654
No 26
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=99.08 E-value=6.4e-10 Score=82.51 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=61.2
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCC-CCCCcc--------------c-hhhhcC---CCCCHHHHHHHHHhCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQ-PGATLF--------------L-KDLQRN---GVDTEDEIYHVTYFGKGRMP 126 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~-~~~~~~--------------~-p~l~~~---~~~~~~~l~~~i~~g~~~MP 126 (172)
..+|+.+|+.+|++ |.+||..+..+.+ .|+.+. + ..+... -.|+.+.|...+.+++..+|
T Consensus 27 ~~~da~~G~~vFkk-C~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~~~g~vWd~~~L~~fL~~Pkk~vp 105 (135)
T COG3474 27 ALGDAAAGEKVFKK-CQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTAPKKYVP 105 (135)
T ss_pred ccccHHHhHHHHHH-HHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhccCCcccCHHHHHHHHhChhhhCC
Confidence 34899999999977 9999985432111 111111 0 111111 26889999999999999899
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
+-.| +|.+.-.++|+.||++||++...
T Consensus 106 GTkM--------~faGlkk~~dradlIAYLk~~~~ 132 (135)
T COG3474 106 GTKM--------AFAGLKKDQDRADLIAYLKSLPS 132 (135)
T ss_pred Ccce--------eecCCCCHHHHHHHHHHHHhccc
Confidence 8864 45566789999999999998864
No 27
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=98.70 E-value=3.4e-08 Score=71.88 Aligned_cols=73 Identities=21% Similarity=0.422 Sum_probs=52.7
Q ss_pred HHHHHHccCccccCCCCCC--CCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 030717 73 GVSLFRQACIGCHDGGGNV--IQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIK 150 (172)
Q Consensus 73 G~~lf~~~C~~CHg~~g~~--~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~ 150 (172)
|+++|...|..||+.+..+ ......-..|.+.. ..+.|++...+|.+.||+-+. | ..+||+|++
T Consensus 50 Gk~vy~~tC~~CHa~~~~GAPk~GdkAaW~PRiaq----G~dtL~~hai~GfnAMPpkG~-c---------a~cSdDe~k 115 (126)
T COG3245 50 GKKVYGATCQACHAAGLPGAPKTGDKAAWAPRIAQ----GKDTLLDHAINGFNAMPPKGG-C---------ADCSDDEVK 115 (126)
T ss_pred cchhHhhhhhHhccCCCCCCCCCCchhhhhhHHHh----chHHHHHHHhccccCCCCCCC-c---------CCCCHHHHH
Confidence 9999999999999865332 11111112333322 477889999999999999862 2 469999999
Q ss_pred HHHHHHHhh
Q 030717 151 LLAQFVKSQ 159 (172)
Q Consensus 151 ~VaaYl~~~ 159 (172)
..++|+..+
T Consensus 116 AaId~M~~~ 124 (126)
T COG3245 116 AAIDFMAAA 124 (126)
T ss_pred HHHHHHHhc
Confidence 999999764
No 28
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=98.32 E-value=4.4e-06 Score=67.06 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=59.6
Q ss_pred hHHhHHHHH-HccCccccC--CCCC-------C-CC-C-----------CCCccchhhhcCC-CCCHHHHHHHHHhCCC-
Q 030717 69 DIQKGVSLF-RQACIGCHD--GGGN-------V-IQ-P-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGKG- 123 (172)
Q Consensus 69 d~~~G~~lf-~~~C~~CHg--~~g~-------~-~~-~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~~- 123 (172)
...+|++|| ...|..||. ..+. | .+ . |.....|+|.+.| ..+.+++...+.+++.
T Consensus 50 lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~P~lwGs~RtGPDLt~vG~R~s~~w~~~hl~nP~~v 129 (217)
T PRK14487 50 LELAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSLAGESVYDHPFLWGSKRTGPDLARVGGRYSDEWHRNHLINPRSV 129 (217)
T ss_pred HHHHHHHHHHhcChhhccCccccCCchhhhhcCcccccchhhcccccccCCCCCCcchhhhhccCCHHHHHHHHhCcccC
Confidence 356899999 678999996 2211 0 00 0 1112356666554 3578999999999853
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHhhhhCCCCC
Q 030717 124 ----RMPGFGEKCTPRGQCTFGARLQDEDIK--LLAQFVKSQADQGWPK 166 (172)
Q Consensus 124 ----~MP~~~~~~~~~~~~~~~~~Lsd~ei~--~VaaYl~~~~~~gw~~ 166 (172)
.||+| ..|++++++ ++++||.++..-|=|.
T Consensus 130 ~PgS~MPay-------------~~L~~~~ld~~~~~~~l~~l~~~gvPY 165 (217)
T PRK14487 130 VPESNMPAY-------------PWLAENDLDGTDTAEKMTALRVVGVPY 165 (217)
T ss_pred CCCCCCCCC-------------cccccccCCHHHHHHHHHHhhhcCCCC
Confidence 79999 479999977 9999999987666554
No 29
>COG4654 Cytochrome c551/c552 [Energy production and conversion]
Probab=98.09 E-value=6.6e-06 Score=58.52 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=51.2
Q ss_pred hhhHHhHHHHH-HccCccccCCCCCCCCCCCCccchhhhc-C--CCCCHHHHHHHHHhCCC------CCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLF-RQACIGCHDGGGNVIQPGATLFLKDLQR-N--GVDTEDEIYHVTYFGKG------RMPGFGEKCTPRG 136 (172)
Q Consensus 67 ~~d~~~G~~lf-~~~C~~CHg~~g~~~~~~~~~~~p~l~~-~--~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~ 136 (172)
..++++|+.|| ++.|.+||.++-..++ +. +.+++. + +......|...++.|.. .||+-
T Consensus 20 a~~a~~~~aif~qkgC~~CHq~~vktVG--PS--~kdIAakYag~~~~~~kl~q~i~~g~~g~wg~ipMppq-------- 87 (110)
T COG4654 20 AADAEDGKAIFSQKGCVACHQPDVKTVG--PS--YKDIAAKYAGKAGALAKLAQGIKPGGVGVWGPIPMPPQ-------- 87 (110)
T ss_pred ccchhhhHHHHHhccchhhccccccccC--cc--HHHHHHHHccchhHHHHHHHhccccCcCccccCCCCCc--------
Confidence 35678999999 6789999998755322 22 444442 2 12234556666666632 68887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 137 QCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 137 ~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..+||.|.+.++.|+..+.
T Consensus 88 -----p~~sd~~a~~~~kwvl~~~ 106 (110)
T COG4654 88 -----PAISDADAKTLAKWVLAFI 106 (110)
T ss_pred -----ccccchHHHHHHHHHHhcc
Confidence 4678888888888887653
No 30
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=97.58 E-value=0.00043 Score=58.36 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHhhhhCCC
Q 030717 143 RLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
.||++|+++|++||.++.++..
T Consensus 262 ~Lt~~E~~dLvaFL~tLt~~~~ 283 (291)
T TIGR03791 262 ELSEREREDLIAFIETLDAELA 283 (291)
T ss_pred CCCHHHHHHHHHHHHhcCCCCC
Confidence 6999999999999999987654
No 31
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Probab=97.51 E-value=0.00068 Score=57.25 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=52.5
Q ss_pred hHHhHHHHH-HccCccccCCC-----------CCCCCC-----------CCCccchhhhcCC-CCCHHHHHHHHHhCC--
Q 030717 69 DIQKGVSLF-RQACIGCHDGG-----------GNVIQP-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGK-- 122 (172)
Q Consensus 69 d~~~G~~lf-~~~C~~CHg~~-----------g~~~~~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~-- 122 (172)
...+|+.|| ...|..||.-. |..... |.....|+|.+.| ..+.+++...+.+++
T Consensus 50 ~~~~G~~~y~~~gC~~CH~q~vr~~~~~~~~~g~~s~~~~~~~~~p~~~g~~r~GPDL~~vG~r~~~~w~~~~l~~P~~~ 129 (294)
T PRK14486 50 LELAGRDVYQREGCVNCHTQTVRPLKSEVVRYGQYSKAGEFAYDHPFLWGSKRTGPDLARIGGKYPDAWHYAHFEDPQAV 129 (294)
T ss_pred HHHHHHHHHHHcCchhhcCccccCCcccccccCCCCcchhhhccccccccCCCCCCchhhhcccCCHHHHHHHHhCcccC
Confidence 357899999 55999999831 100000 0111245555443 346788889999984
Q ss_pred ---CCCCCCCCCCCC--------CCCCCCCCCCCH---------HHHHHHHHHHHhhh
Q 030717 123 ---GRMPGFGEKCTP--------RGQCTFGARLQD---------EDIKLLAQFVKSQA 160 (172)
Q Consensus 123 ---~~MP~~~~~~~~--------~~~~~~~~~Lsd---------~ei~~VaaYl~~~~ 160 (172)
+.||+|...-+- .+.-..+--.++ .|+++|++||..+.
T Consensus 130 ~p~s~MP~~~~l~~~~~~~~~~~~~~~~~~~py~~~~~~~~~~~~e~~AlvAYl~~L~ 187 (294)
T PRK14486 130 VPRSNMPAYAFLKGKPLDAALTQRKMRALGFPYTDADLAALAGKTEMDAMVAYMQSLG 187 (294)
T ss_pred CCCCCCCCCHHHhhccCcHHHHHHhhhhcCCCCCHHHHHHhcccHHHHHHHHHHHHhc
Confidence 479999622111 000000011233 36789999999885
No 32
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=97.41 E-value=6.1e-05 Score=58.06 Aligned_cols=65 Identities=22% Similarity=0.396 Sum_probs=38.0
Q ss_pred HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHH
Q 030717 71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDI 149 (172)
Q Consensus 71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei 149 (172)
+.|++|++.+|++||.....+ . +..+.. ...+++.+...|. .|- .++ -.+|++|.
T Consensus 1 q~G~~Lv~~kC~~CHs~~~~g----~---~sRIs~-~rKTPEGW~mTV~----RM~~~hG------------l~Is~eer 56 (167)
T PF09098_consen 1 QDGEQLVQEKCAGCHSADYDG----A---LSRISH-QRKTPEGWDMTVK----RMQRVHG------------LPISPEER 56 (167)
T ss_dssp --HHHHHHHCHCCTC-EECTT----E---ETTGGG-EEE-HHHHHHHHH----HHHHHC-----------------HHHH
T ss_pred CcHHHHHHHHHHHhcCccccC----c---cccccc-ccCCHHHHHHHHH----HHHHHcC------------CCCCHHHH
Confidence 369999999999999865442 1 222211 1226777777664 354 333 57999999
Q ss_pred HHHHHHHHhh
Q 030717 150 KLLAQFVKSQ 159 (172)
Q Consensus 150 ~~VaaYl~~~ 159 (172)
..|+.||...
T Consensus 57 ~avVkYLAd~ 66 (167)
T PF09098_consen 57 RAVVKYLADT 66 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999864
No 33
>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family. The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.
Probab=97.37 E-value=0.0004 Score=59.20 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=45.0
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccc--h-----------hhhcCCCC---------C--HHHHHHHHHhC--CC
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFL--K-----------DLQRNGVD---------T--EDEIYHVTYFG--KG 123 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~--p-----------~l~~~~~~---------~--~~~l~~~i~~g--~~ 123 (172)
..+-+.++..||+.||+++|.....+-.+.. + ...+.+.. + ...|+..+..- ..
T Consensus 213 e~rarpyL~~NC~~CH~p~g~~~~sgL~L~~~~~~~~~~gv~k~p~~~ggg~~g~~~~IvPGdpe~SiL~~R~~~~d~~~ 292 (317)
T TIGR03806 213 AQRARAYLDVNCAHCHNPGGLASNSGLDLRFDDPLGYTLGVCKQPVAAGGGSGGLKYDIVPGDPEKSILLYRMHSTEPGV 292 (317)
T ss_pred HHHHHHHHHhHHHhcCCCCcCccccceeEecccccchhcccccccccccCCCCCcceeecCCChhhChHHHHHhcCCccc
Confidence 3567778899999999986543222222111 1 01111100 1 12244444322 34
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhh
Q 030717 124 RMPGFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQ 159 (172)
Q Consensus 124 ~MP~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~ 159 (172)
.||+.+ ..|++ +++..|.+||.++
T Consensus 293 ~MPp~G------------~~l~~~e~vaLI~~WI~~l 317 (317)
T TIGR03806 293 RMPELG------------RSLVHQEGLALIRQWIASL 317 (317)
T ss_pred cCCcCC------------CCCCCHHHHHHHHHHHHhC
Confidence 899987 56776 7899999999864
No 34
>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II. This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).
Probab=97.36 E-value=0.0014 Score=53.22 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=50.4
Q ss_pred hHHhHHHHH-HccCccccC--CCCC-------C--CCC-----------CCCccchhhhcCC-CCCHHHHHHHHHhCCC-
Q 030717 69 DIQKGVSLF-RQACIGCHD--GGGN-------V--IQP-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGKG- 123 (172)
Q Consensus 69 d~~~G~~lf-~~~C~~CHg--~~g~-------~--~~~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~~- 123 (172)
....|+.|| +..|..||. ..+. | ... |..-..|+|.+.| ..+.+++...+.+++.
T Consensus 49 lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~ryG~~S~a~e~~yd~p~lwGs~RtGPDLt~vG~R~s~~wh~~hl~nPr~v 128 (232)
T TIGR00781 49 LELAGRDIYIREGCYHCHSQMIRPFRAEVERYGHYSLAGESMYDHPFQWGSKRTGPDLARVGGRYSDEWHVKHLFDPRSV 128 (232)
T ss_pred HHHHHHHHHHhcChhhcccccccCcchhhhhcCcccccchhhcccccccCCCCcCcCcccccccCCHHHHHHHHhCcccc
Confidence 356899999 778999996 2210 0 000 1112357777654 3568889999999853
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHhhhhCC
Q 030717 124 ----RMPGFGEKCTPRGQCTFGARLQDEDI--KLLAQFVKSQADQG 163 (172)
Q Consensus 124 ----~MP~~~~~~~~~~~~~~~~~Lsd~ei--~~VaaYl~~~~~~g 163 (172)
.||+|. .|+++++ .++.+.++.++.-|
T Consensus 129 ~PgSiMP~y~-------------~L~~~~ld~~~~~~~~~~~~~~G 161 (232)
T TIGR00781 129 VPESIMPAYK-------------HLATKKVDVDTAYAEAKTQKKVG 161 (232)
T ss_pred CCCCCCCCCc-------------ccccccCCHHHHHHHHHHHHhcC
Confidence 799994 4554444 35556666554333
No 35
>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.
Probab=96.89 E-value=0.0005 Score=48.60 Aligned_cols=76 Identities=9% Similarity=0.210 Sum_probs=39.4
Q ss_pred chhhHHhHHHHHH---------ccCccccCCCCCCC----CCCCC--ccchhhhcCCCCCHHHHHHHHHhC-CCCCCCCC
Q 030717 66 QTVDIQKGVSLFR---------QACIGCHDGGGNVI----QPGAT--LFLKDLQRNGVDTEDEIYHVTYFG-KGRMPGFG 129 (172)
Q Consensus 66 ~~~d~~~G~~lf~---------~~C~~CHg~~g~~~----~~~~~--~~~p~l~~~~~~~~~~l~~~i~~g-~~~MP~~~ 129 (172)
...++++|+++|. ..|++||+.+.... ..|.. +..|..-...+.+.+.+.+....- ..+ ++
T Consensus 7 ~~~sa~rG~~~f~~~~~~~g~~~sCasCH~~~p~~~Gkh~~TgK~I~PmAps~Np~RftD~~kVEKwf~RNC~dv---lg 83 (98)
T PF09086_consen 7 AGFSAARGEAFFTSKHTGNGKEWSCASCHTADPTQPGKHAKTGKVIEPMAPSVNPKRFTDAAKVEKWFKRNCNDV---LG 83 (98)
T ss_dssp SS--HHHHHHHHH--ECCTTCECSCHHHH-SSTTS-EE-TTTS-EE--SSTTTSTTTTSSHHHHHHHHHHHHHHH---HS
T ss_pred CCCCHHHHHHHHHccCCCCCCCCCcccccCCCcccccccccCCCcccCcCCccChhhcCCHHHHHHHHHccchhh---hc
Confidence 4567899999993 25999999663311 11211 112222222345666666644321 111 33
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 030717 130 EKCTPRGQCTFGARLQDEDIKLLAQFV 156 (172)
Q Consensus 130 ~~~~~~~~~~~~~~Lsd~ei~~VaaYl 156 (172)
..-|.+|-.|+++||
T Consensus 84 ------------ReCTa~EKgD~l~yl 98 (98)
T PF09086_consen 84 ------------RECTAQEKGDVLAYL 98 (98)
T ss_dssp ------------S---HHHHHHHHHHH
T ss_pred ------------ccCCHHHhcchheeC
Confidence 567999999999997
No 36
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []. Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.
Probab=96.62 E-value=0.016 Score=47.06 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.4
Q ss_pred hHHhHHHHH-HccCccccC
Q 030717 69 DIQKGVSLF-RQACIGCHD 86 (172)
Q Consensus 69 d~~~G~~lf-~~~C~~CHg 86 (172)
-...|+.|| ...|..||.
T Consensus 49 lel~GR~iYi~eGC~~CHS 67 (226)
T PF02433_consen 49 LELAGRDIYIREGCYYCHS 67 (226)
T ss_pred HHHhHHHHHHHcCchhccc
Confidence 356899999 678999997
No 37
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=96.38 E-value=0.0048 Score=49.44 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=39.8
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVD-TEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ 145 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~-~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls 145 (172)
..|....+++|+..|..||.-+.. -..+..+... ..+.+++.++ .||.- .++
T Consensus 166 gfdf~AAk~L~~~KCNkCHTl~SV---------ed~lrkYkKkGkid~iVkrMq----a~PnS--------------gIt 218 (233)
T PF10643_consen 166 GFDFAAAKALFDRKCNKCHTLKSV---------EDALRKYKKKGKIDKIVKRMQ----AVPNS--------------GIT 218 (233)
T ss_dssp T--HHHHHHHHHHHTTSSS-SHHH---------HHHHHHTTTTT-HHHHHHHHH----HSTT------------------
T ss_pred hhhHHHHHHHHHhhccccccHHHH---------HHHHHHHHhcCCHHHHHHHHH----hCCCC--------------CCC
Confidence 345677889999999999973211 2223233221 3666666665 46764 589
Q ss_pred HHHHHHHHHHHHhh
Q 030717 146 DEDIKLLAQFVKSQ 159 (172)
Q Consensus 146 d~ei~~VaaYl~~~ 159 (172)
++|+..|..||..+
T Consensus 219 ~eDa~~I~~YLnek 232 (233)
T PF10643_consen 219 DEDAPQIMMYLNEK 232 (233)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 38
>PF14376 Haem_bd: Haem-binding domain
Probab=96.22 E-value=0.014 Score=43.90 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=45.7
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCC-----------------ccchhhhcCC----CCCHHHHHHHHHhCCCCCCC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGAT-----------------LFLKDLQRNG----VDTEDEIYHVTYFGKGRMPG 127 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~-----------------~~~p~l~~~~----~~~~~~l~~~i~~g~~~MP~ 127 (172)
..+.-+.|+++.|.-||.....-+-.... +.+..+..++ ....+.+...|.+| .||.
T Consensus 32 ~p~~v~~il~~~CydCHSn~T~~PwYa~i~p~s~l~~~dI~~Gr~~lNfs~~~~~~~~~~~~~l~~i~~~I~~g--~MP~ 109 (137)
T PF14376_consen 32 APEEVKIILKNSCYDCHSNNTRYPWYANIAPASWLMEKDIKEGRRHLNFSEWGSYSKRKQEAKLAKIEEVIEDG--EMPP 109 (137)
T ss_pred chHHHHHHHHccccccCCCCCCCccceecCchHHHHHHHHHHHHHHhCcchhhhcCcccCHHHHHHHHHHHHcC--CCCh
Confidence 34556678899999999865432211110 0000100000 01234566667654 4665
Q ss_pred CCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhh
Q 030717 128 FGEKCTPRGQCTF-GARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 128 ~~~~~~~~~~~~~-~~~Lsd~ei~~VaaYl~~~ 159 (172)
..+.- .| ...||++|...|++|+.+.
T Consensus 110 ~~Y~~------~H~~a~Ls~~ek~~Ll~Wi~~~ 136 (137)
T PF14376_consen 110 PSYTL------LHWEAKLSEEEKQALLNWIKEQ 136 (137)
T ss_pred HHHhh------hCCCCCCCHHHHHHHHHHHHHc
Confidence 43110 11 3679999999999999875
No 39
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=96.14 E-value=0.0081 Score=49.61 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCC
Q 030717 111 EDEIYHVTYFGKG-----RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQG 163 (172)
Q Consensus 111 ~~~l~~~i~~g~~-----~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~g 163 (172)
...+...|+++.. .||++ ..++|++.++|++||..++++.
T Consensus 172 ~~~~~~~i~~p~~~k~~~~m~~~-------------~~~tdq~~~dlvaYL~~~~ep~ 216 (250)
T COG2857 172 EGELGIFIADPLKDKPGTYMPGN-------------PALTDQEVKDLVAYLKWAAEPE 216 (250)
T ss_pred hhhHhhhccCccccCCcCCCCCC-------------hhhHHHHHHHHHHHHHHccCcc
Confidence 3346667777643 68877 5799999999999999887553
No 40
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=95.92 E-value=0.011 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.686 Sum_probs=19.2
Q ss_pred chhhHHhHHHHHHccCccccCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~ 88 (172)
..+.+++|.++|.+.|++||+..
T Consensus 11 D~aslqRG~qvy~~~C~~CHsl~ 33 (219)
T PF02167_consen 11 DKASLQRGAQVYMEVCASCHSLK 33 (219)
T ss_dssp -HHHHHHHHHHHHHTGGGTSBCT
T ss_pred cHHHHHHHHHHHHHHHhhccccc
Confidence 34568999999999999999853
No 41
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.
Probab=95.75 E-value=0.011 Score=51.77 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=40.7
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDI 149 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei 149 (172)
-..|+.+|+.+|+.||..... .. + +...+..++. .|-++ -.|+++|.
T Consensus 321 w~~a~~ly~~~Cs~CH~~~~~----~h---------f---~AN~W~g~~~----~M~~~-------------t~l~~~e~ 367 (386)
T TIGR02162 321 WAYAKSMYNGACSMCHVQPEP----AH---------F---DANTWIGTLN----GMKGF-------------TNLDKEQE 367 (386)
T ss_pred HHHHHHHHhcchhhhcCCCCc----cc---------c---CcccCHHHHH----HHhhh-------------cCCCHHHH
Confidence 467999999999999983211 11 1 3334444443 47777 47999999
Q ss_pred HHHHHHHHhhh
Q 030717 150 KLLAQFVKSQA 160 (172)
Q Consensus 150 ~~VaaYl~~~~ 160 (172)
+-|..||..-+
T Consensus 368 ~lv~~YLQ~hA 378 (386)
T TIGR02162 368 RLVLRYLQMHA 378 (386)
T ss_pred HHHHHHHHHhh
Confidence 99999998654
No 42
>COG3748 Predicted membrane protein [Function unknown]
Probab=95.57 E-value=0.036 Score=47.39 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=45.9
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH-----HhCC-CCCCCCCCCCCCCCCCCCCC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT-----YFGK-GRMPGFGEKCTPRGQCTFGA 142 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i-----~~g~-~~MP~~~~~~~~~~~~~~~~ 142 (172)
+..+-+.+....|..||..... -.+.+ .|.. +...++++++.... +-|+ ..||+-. -.
T Consensus 323 ~F~kv~~~v~~rCs~CHaa~P~--~e~~~--~~p~-gv~ldt~~~iaa~A~~Iy~qA~~s~~MP~gN-----------vt 386 (407)
T COG3748 323 HFAKVRDVVQGRCSMCHAAEPT--WEGIS--APPK-GVMLDTDEQIAAHAREIYLQAGRSHAMPPGN-----------VT 386 (407)
T ss_pred chHHHHHHHHhhhhhhhcCCCc--ccccc--cCCC-ceeecCHHHHHHHHHHHHHHHHHhccCCCcc-----------cc
Confidence 4566777888999999984321 00110 1111 12234566655422 2333 3799864 25
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 030717 143 RLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~~~ 160 (172)
.+||||..-|.+|+.+-.
T Consensus 387 ~mT~eER~ll~aW~e~~~ 404 (407)
T COG3748 387 QMTDEERALLAAWFESGA 404 (407)
T ss_pred cCCHHHHHHHHHHHHhcc
Confidence 799999999999998754
No 43
>KOG3453 consensus Cytochrome c [Energy production and conversion]
Probab=95.10 E-value=0.02 Score=41.40 Aligned_cols=83 Identities=25% Similarity=0.365 Sum_probs=52.1
Q ss_pred chhhHHhHHHHHHccCccccCCCCC-CCCCCCCccchhhhc--------C---------C-CCCHHHHHHHHHhCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGN-VIQPGATLFLKDLQR--------N---------G-VDTEDEIYHVTYFGKGRMP 126 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~-~~~~~~~~~~p~l~~--------~---------~-~~~~~~l~~~i~~g~~~MP 126 (172)
...|++.|+.+|-..|..||..... ....++. +..+.+ + + .|..+.|...+.+++-..|
T Consensus 5 ~~~d~~~g~~~f~~rc~qch~~~~~~~~k~~p~--l~gl~g~~~g~~~~~sy~~a~KnKgV~wgE~tl~eyLenpkkyip 82 (110)
T KOG3453|consen 5 PAGDVEKGKKIFPQRCAQCHTVEKGGFHKTGPN--LHGLFGRQLGQAAGLSYTDANKNKGVTWGEDTLMEYLENPKKYIP 82 (110)
T ss_pred cccccccccccceeeccccccccCCcccccCCc--chhhHHHhhccccCcceeecccCCceEEcchhHHHHHhCCCcccc
Confidence 3567889999999999999974321 1111111 111111 0 1 3567788899999877666
Q ss_pred CCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhh
Q 030717 127 GFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQ 159 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~ 159 (172)
+-.|. | ..|.. +|..|+++|+..-
T Consensus 83 GtKmi--------f-aGikk~~eraDlIayl~ka 107 (110)
T KOG3453|consen 83 GTKMI--------F-AGIKKKAERADLIAYLKKA 107 (110)
T ss_pred cccee--------e-cccCchHHHHHHHHHHHHh
Confidence 55421 1 13455 9999999999764
No 44
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=95.06 E-value=0.061 Score=50.59 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=45.3
Q ss_pred HHhHHHHH-HccCccccCCC-----------CCCCCC-----------CCCccchhhhcCC-CCCHHHHHHHHHhCCC--
Q 030717 70 IQKGVSLF-RQACIGCHDGG-----------GNVIQP-----------GATLFLKDLQRNG-VDTEDEIYHVTYFGKG-- 123 (172)
Q Consensus 70 ~~~G~~lf-~~~C~~CHg~~-----------g~~~~~-----------~~~~~~p~l~~~~-~~~~~~l~~~i~~g~~-- 123 (172)
..+|+++| +..|..||.-- |.-... |.....|+|.+.| ..+.+.-...+.+++.
T Consensus 537 ~~~Gr~iyi~egC~~CHsq~vr~~~~e~~r~G~~s~~~e~~~d~p~~~Gs~rtgpdl~~~g~~~~~~wh~~hl~~p~~~~ 616 (712)
T PRK14485 537 ELEGRDLYIREGCYNCHSQMIRPFRSEVERYGEYSKAGEFVYDHPFLWGSKRTGPDLAREGGKYPDSWHYNHMEDPQSTS 616 (712)
T ss_pred HHhhHHHHHHcCccccccccCCCCchhHHhcCCCCchhhhhccCCcccCCCCcCcchhhhcCCCChHHHHHHhcCchhcC
Confidence 56899999 67899999721 110000 1111246666544 2345666667777754
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 030717 124 ---RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKS 158 (172)
Q Consensus 124 ---~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~ 158 (172)
.||++. |-+...++.+++.+-...++.
T Consensus 617 p~s~mp~y~--------~l~~~~~~~~~~~~~~~~~~~ 646 (712)
T PRK14485 617 PGSIMPAYP--------WLLENELDISDTPAKIKAMQT 646 (712)
T ss_pred CCCCCCCCh--------hhhhCCCChHHHHHHHHHHHh
Confidence 799885 223345555555544444443
No 45
>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional
Probab=95.06 E-value=0.023 Score=49.81 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=40.1
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDI 149 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei 149 (172)
-..|+.+|+.+|+.||+.... .. + +...+..++. .|-.+ -.|+++|.
T Consensus 318 w~ya~~ly~~~Cs~CHa~~~~----~h---------f---~AN~W~g~~k----~M~~~-------------t~ld~~e~ 364 (390)
T PRK15032 318 WAYADSLYNGTCNQCHGAPEI----AH---------F---DANGWIGTLN----GMIGF-------------TSLDKREE 364 (390)
T ss_pred HHHHHHHHhccchhhcCCCCc----cc---------c---CcccCHHHHH----HHHhc-------------cCCCHHHH
Confidence 357999999999999983221 11 1 3333344443 47777 47999999
Q ss_pred HHHHHHHHhhh
Q 030717 150 KLLAQFVKSQA 160 (172)
Q Consensus 150 ~~VaaYl~~~~ 160 (172)
+-|..||..-+
T Consensus 365 ~ll~kYLQ~hA 375 (390)
T PRK15032 365 RTLLKYLQMNA 375 (390)
T ss_pred HHHHHHHHHhc
Confidence 99999997654
No 46
>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]
Probab=94.11 E-value=0.018 Score=45.89 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=45.7
Q ss_pred HhHHHHH-HccCccccCCC-----------C-CCCCCCCCccc----------hhhhcCC-CCCHHHHHHHHHhCCC---
Q 030717 71 QKGVSLF-RQACIGCHDGG-----------G-NVIQPGATLFL----------KDLQRNG-VDTEDEIYHVTYFGKG--- 123 (172)
Q Consensus 71 ~~G~~lf-~~~C~~CHg~~-----------g-~~~~~~~~~~~----------p~l~~~~-~~~~~~l~~~i~~g~~--- 123 (172)
..|+.|| ...|..||.-- | -.......+.. |+|++.| ..+.++-...+.+++.
T Consensus 53 LaGR~IYIreGCy~CHSQmiRpfr~E~eRYGhySvA~Es~yDhPflWGSKRTGPDLaRVG~ryS~dWH~~Hl~~PR~vVP 132 (227)
T COG2993 53 LAGRDIYIREGCYVCHSQMIRPFRAEVERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLLDPRSVVP 132 (227)
T ss_pred hccceeEeecccchhhhhccccchHHHHhhccceechhhhccCchhhcCCccCcchhhhccccccHHHHHHccCchhcCc
Confidence 4699998 67899999721 0 00111111223 4444433 3356666667777754
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717 124 --RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 124 --~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
.||+++. -+. +.-|++++.+-+..++.-|=
T Consensus 133 eSiMPsY~~--------L~~---~~ld~~d~~~~~~~~r~~GV 164 (227)
T COG2993 133 ESIMPSYPW--------LFD---NKLDVDDIGAELKALRKVGV 164 (227)
T ss_pred cccCcccHH--------Hhc---CCCchHHHHHHHHhhccCCC
Confidence 7999962 111 22356666666666654443
No 47
>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.
Probab=93.71 E-value=0.066 Score=39.50 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 030717 77 FRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDIKLLAQF 155 (172)
Q Consensus 77 f~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei~~VaaY 155 (172)
|..+|++||..- .|.+ ...+.+..++.+ |. =|+ -...|++++...|.+|
T Consensus 1 Y~~eCgsCH~ay-----------pP~~-----Lpa~sW~~im~~----l~~HFG----------~~a~Ld~~~~~~I~~Y 50 (120)
T PF09626_consen 1 YKEECGSCHMAY-----------PPGL-----LPAESWQKIMQD----LDDHFG----------EDASLDPATQAEIWAY 50 (120)
T ss_dssp -HHHTTSSS---------------GGG-----S-HHHHHHHHCG----GGGBTT----------B-----HHHHHHHHHH
T ss_pred CccchhhccCcC-----------Cccc-----CCHHHHHHHHHh----HHHhcC----------CCCCCCHHHHHHHHHH
Confidence 568999999621 1222 156677777643 33 122 1245999999999999
Q ss_pred HHhhhhCCCC
Q 030717 156 VKSQADQGWP 165 (172)
Q Consensus 156 l~~~~~~gw~ 165 (172)
|.+.+.+.-.
T Consensus 51 L~~nAa~~~~ 60 (120)
T PF09626_consen 51 LQANAADRSQ 60 (120)
T ss_dssp HHHTSTTTTS
T ss_pred HHHccccccc
Confidence 9987654433
No 48
>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c.
Probab=90.19 E-value=0.47 Score=30.32 Aligned_cols=10 Identities=30% Similarity=0.953 Sum_probs=8.0
Q ss_pred CccccCCCCC
Q 030717 81 CIGCHDGGGN 90 (172)
Q Consensus 81 C~~CHg~~g~ 90 (172)
|..||+....
T Consensus 1 C~~CHg~~~~ 10 (59)
T PF07635_consen 1 CFSCHGPDKQ 10 (59)
T ss_pred CcCCCCCCCc
Confidence 9999997644
No 49
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=89.32 E-value=0.65 Score=40.45 Aligned_cols=20 Identities=35% Similarity=0.968 Sum_probs=15.9
Q ss_pred hHHhHHHHHH--ccCccccCCC
Q 030717 69 DIQKGVSLFR--QACIGCHDGG 88 (172)
Q Consensus 69 d~~~G~~lf~--~~C~~CHg~~ 88 (172)
.-.+|-++|. .+|++||...
T Consensus 219 ~e~rGl~LF~~k~~C~aCH~g~ 240 (364)
T COG1858 219 QEKRGLALFKGKANCAACHNGI 240 (364)
T ss_pred HHHHHHHHHccCCCchhhccCc
Confidence 3568999995 6999999743
No 50
>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.71 E-value=0.53 Score=42.57 Aligned_cols=22 Identities=27% Similarity=0.711 Sum_probs=18.4
Q ss_pred hhhHHhHHHHH-HccCccccCCC
Q 030717 67 TVDIQKGVSLF-RQACIGCHDGG 88 (172)
Q Consensus 67 ~~d~~~G~~lf-~~~C~~CHg~~ 88 (172)
...+.+|++|| +..|++||.+.
T Consensus 360 ~~~v~~G~~lF~~~GCa~CH~p~ 382 (499)
T PF06537_consen 360 DPQVLRGKQLFYQIGCASCHTPS 382 (499)
T ss_pred cHHHHHHHHHHHhcCCcccCCCc
Confidence 45688999999 57899999864
No 51
>KOG3052 consensus Cytochrome c1 [Energy production and conversion]
Probab=86.80 E-value=0.24 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.876 Sum_probs=17.5
Q ss_pred hhHHhHHHHHHccCccccCC
Q 030717 68 VDIQKGVSLFRQACIGCHDG 87 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~ 87 (172)
+.+.+|-++|.+.|++||..
T Consensus 93 aSiRRGyqVYkqVCaaCHSm 112 (311)
T KOG3052|consen 93 ASIRRGYQVYKQVCAACHSM 112 (311)
T ss_pred HHHhhhHHHHHHHHHHhhhh
Confidence 35789999999999999983
No 52
>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....
Probab=86.76 E-value=0.27 Score=37.81 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=13.7
Q ss_pred hHHhHHHHHH---------ccCccccCCC
Q 030717 69 DIQKGVSLFR---------QACIGCHDGG 88 (172)
Q Consensus 69 d~~~G~~lf~---------~~C~~CHg~~ 88 (172)
-++.|+.||. ..|++||.+.
T Consensus 4 ~~~LGk~LF~D~~LS~~~~~SCasCH~~~ 32 (159)
T PF03150_consen 4 KAALGKKLFFDPRLSGDGTVSCASCHDPE 32 (159)
T ss_dssp HHHHHHHHHT-GGGSTTSS--HHHHS-TT
T ss_pred HHHHHHHHhCCCccCCCcCcCchhhCCCc
Confidence 4678999993 4799999754
No 53
>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]
Probab=86.22 E-value=0.69 Score=40.01 Aligned_cols=21 Identities=29% Similarity=0.778 Sum_probs=17.4
Q ss_pred hhhHHhHHHHH-HccCccccCC
Q 030717 67 TVDIQKGVSLF-RQACIGCHDG 87 (172)
Q Consensus 67 ~~d~~~G~~lf-~~~C~~CHg~ 87 (172)
..++..|++|| ...|.+||.+
T Consensus 348 dp~vl~GkkLF~~agC~aCH~p 369 (481)
T COG3488 348 DPQVLAGKKLFAQAGCVACHTP 369 (481)
T ss_pred ChhhhhhhHHHHhcCchhccCC
Confidence 44578899998 6799999985
No 54
>COG3258 Cytochrome c [Energy production and conversion]
Probab=84.88 E-value=2.2 Score=35.66 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHhhh
Q 030717 145 QDEDIKLLAQFVKSQA 160 (172)
Q Consensus 145 sd~ei~~VaaYl~~~~ 160 (172)
+-.|++++++|+.=+.
T Consensus 121 DspEmkAmlaY~kWL~ 136 (293)
T COG3258 121 DSPEMKAMLAYMKWLK 136 (293)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5678999999987443
No 55
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=80.91 E-value=1.1 Score=37.89 Aligned_cols=21 Identities=33% Similarity=0.741 Sum_probs=16.1
Q ss_pred hhHHhHHHHH---------HccCccccCCC
Q 030717 68 VDIQKGVSLF---------RQACIGCHDGG 88 (172)
Q Consensus 68 ~d~~~G~~lf---------~~~C~~CHg~~ 88 (172)
..++-|+.|| ...|++||.+.
T Consensus 4 ~k~~LGk~LFfD~~LS~~~~~SCasCH~p~ 33 (291)
T TIGR03791 4 EKAALGKALFFDPRLSRDGSMSCATCHNPG 33 (291)
T ss_pred HHHHHHHHHhcCcccCCCCCcCchhcCCcc
Confidence 3467899998 24799999854
No 56
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=68.90 E-value=1.2 Score=36.76 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=18.5
Q ss_pred hhhHHhHHHHHHccCccccCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~ 88 (172)
.+...+|.++|...|..||+..
T Consensus 40 ~~~lq~g~~~~~~~c~~chs~~ 61 (250)
T COG2857 40 KGSLQRGAQLYKEYCSACHSLK 61 (250)
T ss_pred hHHhhhceeeeecCChhhcccc
Confidence 3457889999999999999964
No 57
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=56.88 E-value=7.2 Score=34.05 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=16.6
Q ss_pred hhHHhHHHHHH---------ccCccccCCC
Q 030717 68 VDIQKGVSLFR---------QACIGCHDGG 88 (172)
Q Consensus 68 ~d~~~G~~lf~---------~~C~~CHg~~ 88 (172)
+.++.|++||- ..|++||..+
T Consensus 60 ~~~aLGk~LffDprLS~sg~~SC~sCH~~~ 89 (364)
T COG1858 60 AKAALGKKLFFDPRLSASGTISCATCHNLA 89 (364)
T ss_pred HHHHHHHHhhcCcccCCCCCcCchhhcCcc
Confidence 45889999982 4799999743
No 58
>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=56.05 E-value=6.4 Score=35.79 Aligned_cols=21 Identities=38% Similarity=0.782 Sum_probs=15.5
Q ss_pred HHHHH-HccCccccCCCCCCCCC
Q 030717 73 GVSLF-RQACIGCHDGGGNVIQP 94 (172)
Q Consensus 73 G~~lf-~~~C~~CHg~~g~~~~~ 94 (172)
|. +| +..|.+||-.+|.+..+
T Consensus 64 GP-LfN~~SC~sCH~~dGRG~pP 85 (499)
T PF06537_consen 64 GP-LFNARSCQSCHIKDGRGHPP 85 (499)
T ss_pred ch-hhhhhhHhhcccCCCCCCCC
Confidence 54 67 57899999988776443
No 59
>PF11783 Cytochrome_cB: Cytochrome c bacterial; InterPro: IPR024673 This is a family of long bacterial cytochrome c proteins, found mainly in Proteobacteria and Chlorobi families. The structure of Shewanella oneidensis cytochrome c has been solved [].; PDB: 1SP3_A.
Probab=47.10 E-value=5.3 Score=31.07 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=6.6
Q ss_pred cCccccCCCC
Q 030717 80 ACIGCHDGGG 89 (172)
Q Consensus 80 ~C~~CHg~~g 89 (172)
.|..||..+|
T Consensus 156 ~C~dCH~~~G 165 (166)
T PF11783_consen 156 QCADCHSPNG 165 (166)
T ss_dssp -HHHHSTT--
T ss_pred ChhhcCCCCC
Confidence 6999998765
No 60
>PF11845 DUF3365: Protein of unknown function (DUF3365); InterPro: IPR021796 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.
Probab=46.82 E-value=5.8 Score=30.48 Aligned_cols=9 Identities=33% Similarity=1.313 Sum_probs=8.1
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
...|..|||
T Consensus 146 ~~~CL~CHg 154 (188)
T PF11845_consen 146 EESCLSCHG 154 (188)
T ss_pred chHHHHccC
Confidence 578999999
No 61
>TIGR03153 cytochr_NrfH cytochrome c nitrate reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrate reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones.
Probab=45.82 E-value=8 Score=28.75 Aligned_cols=17 Identities=24% Similarity=0.843 Sum_probs=13.5
Q ss_pred HhHHHHHHccCccccCC
Q 030717 71 QKGVSLFRQACIGCHDG 87 (172)
Q Consensus 71 ~~G~~lf~~~C~~CHg~ 87 (172)
++++++.+.+|.+||..
T Consensus 95 ~~~~~~~~~nC~~CH~~ 111 (135)
T TIGR03153 95 EHSRKVVQENCVRCHAG 111 (135)
T ss_pred HHHhHhhhcchHHHHhH
Confidence 34567788999999984
No 62
>PF08090 Enterotoxin_HS1: Heat stable E.coli enterotoxin 1; InterPro: IPR012557 Heat-stable toxin 1 of entero-aggregative Escherichia coli (EAST1) is a small toxin. It is not, however, solely associated with entero-aggregative E. coli but also with many other diarrhoeic E. coli families. Some studies have established the role of EAST1 in some human outbreaks of diarrhoea. Isolates from farm animals have been shown to carry the astA gene coding for EAST1. However, the relation between the presence of EAST1 and disease is not conclusive [].
Probab=45.52 E-value=7.8 Score=21.87 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=8.3
Q ss_pred HccCccccCCC
Q 030717 78 RQACIGCHDGG 88 (172)
Q Consensus 78 ~~~C~~CHg~~ 88 (172)
-..|++|||..
T Consensus 19 ~tac~s~~grt 29 (36)
T PF08090_consen 19 TTACGSCHGRT 29 (36)
T ss_pred HhhhccCCCCc
Confidence 36799999843
No 63
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=44.73 E-value=20 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 030717 142 ARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~ 160 (172)
..+|++|+++|++|+.+-.
T Consensus 15 ~~ft~~El~~i~~FY~Sp~ 33 (64)
T PF09832_consen 15 EHFTEEELDAILAFYESPL 33 (64)
T ss_dssp HHS-HHHHHHHHHHHHSHH
T ss_pred HHCCHHHHHHHHHHHCCHH
Confidence 5799999999999998753
No 64
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=42.68 E-value=4.1 Score=23.69 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.2
Q ss_pred hHHHHHHccCccc
Q 030717 72 KGVSLFRQACIGC 84 (172)
Q Consensus 72 ~G~~lf~~~C~~C 84 (172)
.|+.+.+..|..|
T Consensus 23 pG~ViING~C~dC 35 (36)
T PF08194_consen 23 PGNVIINGKCIDC 35 (36)
T ss_pred CCeEEECceeeeC
Confidence 4667778889988
No 65
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=41.13 E-value=6.3 Score=28.12 Aligned_cols=9 Identities=44% Similarity=1.139 Sum_probs=7.6
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
+..|++||.
T Consensus 69 ~~~Ca~CH~ 77 (101)
T PF07627_consen 69 NPACASCHR 77 (101)
T ss_pred CCcHHHHhh
Confidence 368999997
No 66
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR002321 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins []. This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein []. The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core []. The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0005746 mitochondrial respiratory chain; PDB: 1BBH_A 2J9B_B 2J8W_A 1JAF_B 3ZTM_A 2XLD_A 2XL6_A 1E86_A 2YLD_A 2YKZ_A ....
Probab=41.12 E-value=14 Score=26.50 Aligned_cols=9 Identities=44% Similarity=1.246 Sum_probs=7.6
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
...|.+||.
T Consensus 111 ~~~C~aCH~ 119 (122)
T PF01322_consen 111 GKSCKACHD 119 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999994
No 67
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=39.68 E-value=25 Score=30.10 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030717 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ 154 (172)
Q Consensus 124 ~MP~~~~~~~~~~~~~~~~~Lsd~ei~~Vaa 154 (172)
.+|-...||+++++|-+.++|+|+++++|++
T Consensus 183 ~~PviaSHSN~~al~~h~RNl~D~qlkaI~~ 213 (313)
T COG2355 183 KAPVVASHSNARALVDHPRNLSDEQLKAIAE 213 (313)
T ss_pred CCceEEecCCchhccCCCCCCCHHHHHHHHh
Confidence 6888888999999999999999999999975
No 68
>TIGR01905 paired_CXXCH_1 doubled CXXCH domain. This model represents a domain of about 41 amino acids that contains, among other motifs, two copies of the motif CXXCH associated with heme binding. Almost every member of this family has at least three copies of this domain (at least six copies of CXXCH) is predicted to be a high molecular weight c-type cytochrome. Members are found mostly in species of Shewanella, Geobacter, and Vibrio.
Probab=35.95 E-value=15 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=9.4
Q ss_pred HccCccccCCCCC
Q 030717 78 RQACIGCHDGGGN 90 (172)
Q Consensus 78 ~~~C~~CHg~~g~ 90 (172)
...|.+||.+-+.
T Consensus 6 ~g~C~~CH~pH~s 18 (41)
T TIGR01905 6 GGDCTSCHDPHGS 18 (41)
T ss_pred CCCcccccccccc
Confidence 3569999986543
No 69
>PF03264 Cytochrom_NNT: NapC/NirT cytochrome c family, N-terminal region; InterPro: IPR005126 Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC P33932 from SWISSPROT and NirT P24038 from SWISSPROT, bind four haem groups, while others, such as TorC P33226 from SWISSPROT, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.; PDB: 2VR0_F 2J7A_C.
Probab=33.40 E-value=7.3 Score=29.94 Aligned_cols=7 Identities=43% Similarity=1.369 Sum_probs=2.9
Q ss_pred cCccccC
Q 030717 80 ACIGCHD 86 (172)
Q Consensus 80 ~C~~CHg 86 (172)
.|..||.
T Consensus 66 ~C~dCH~ 72 (173)
T PF03264_consen 66 TCVDCHL 72 (173)
T ss_dssp -THHHHS
T ss_pred cCccccC
Confidence 3555554
No 70
>PF09699 Paired_CXXCH_1: Doubled CXXCH motif (Paired_CXXCH_1)
Probab=32.08 E-value=15 Score=21.17 Aligned_cols=12 Identities=42% Similarity=1.021 Sum_probs=8.7
Q ss_pred ccCccccCCCCC
Q 030717 79 QACIGCHDGGGN 90 (172)
Q Consensus 79 ~~C~~CHg~~g~ 90 (172)
..|.+||.+-+.
T Consensus 7 ~~C~~CH~~H~~ 18 (41)
T PF09699_consen 7 GQCTSCHDPHGS 18 (41)
T ss_pred cChhHhcccccc
Confidence 459999976543
No 71
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=31.38 E-value=68 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
|-|-..||++||..=+.||.++
T Consensus 6 ~sylp~lt~~~i~~QI~yll~q 27 (99)
T cd03527 6 FSYLPPLTDEQIAKQIDYIISN 27 (99)
T ss_pred cccCCCCCHHHHHHHHHHHHhC
Confidence 3445789999999999999876
No 72
>PHA01516 hypothetical protein
Probab=30.76 E-value=24 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHH
Q 030717 131 KCTPRGQCTFGARLQDEDIKLL 152 (172)
Q Consensus 131 ~~~~~~~~~~~~~Lsd~ei~~V 152 (172)
-|+..|+..+...|||+|+..+
T Consensus 49 ycn~~glqm~de~ltd~dleem 70 (98)
T PHA01516 49 YCNANGLQMWDESLTDQDLEEM 70 (98)
T ss_pred ccCccchhhhhhhcchhHHHHc
Confidence 4889999999999999998765
No 73
>PF13435 Cytochrome_C554: Cytochrome c554 and c-prime; PDB: 1BVB_A 1FT5_A 1FT6_A 1SP3_A.
Probab=30.45 E-value=39 Score=23.13 Aligned_cols=13 Identities=38% Similarity=1.127 Sum_probs=10.0
Q ss_pred HccCccccCCCCC
Q 030717 78 RQACIGCHDGGGN 90 (172)
Q Consensus 78 ~~~C~~CHg~~g~ 90 (172)
...|.+||...+.
T Consensus 48 ~~~C~~CH~~~~~ 60 (130)
T PF13435_consen 48 ADSCTSCHTPGGD 60 (130)
T ss_dssp HCCCGGGSCCTTT
T ss_pred CCcccccCCCccc
Confidence 4789999986644
No 74
>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]
Probab=30.18 E-value=65 Score=23.33 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030717 142 ARLQDEDIKLLAQFVKS 158 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~ 158 (172)
..++++|+.++..|+.+
T Consensus 133 ~~~~~~d~~~~~~~~~~ 149 (150)
T COG2010 133 AQLSDEDVAAIAAYLKS 149 (150)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 57899999999999975
No 75
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=28.37 E-value=73 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCCCCCCCCC---CCCHHHHHHHHHHHHhh
Q 030717 132 CTPRGQCTFGA---RLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 132 ~~~~~~~~~~~---~Lsd~ei~~VaaYl~~~ 159 (172)
|+|+|.+.+.. -||.+||..++.+....
T Consensus 28 Cm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~ 58 (322)
T COG2896 28 CMPEGPLAFLPKEELLSLEEIRRLVRAFAEL 58 (322)
T ss_pred cCCCCCcccCcccccCCHHHHHHHHHHHHHc
Confidence 77777666655 79999999999998874
No 76
>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]
Probab=27.32 E-value=30 Score=30.24 Aligned_cols=19 Identities=42% Similarity=0.823 Sum_probs=13.8
Q ss_pred HH-HccCccccCCCCCCCCC
Q 030717 76 LF-RQACIGCHDGGGNVIQP 94 (172)
Q Consensus 76 lf-~~~C~~CHg~~g~~~~~ 94 (172)
+| .+.|..||-.+|.+..+
T Consensus 93 lfN~raCqnCHvkDGRGrPP 112 (481)
T COG3488 93 LFNTRACQNCHVKDGRGRPP 112 (481)
T ss_pred ccccccccccccccCCCCCC
Confidence 55 46799999988775433
No 77
>PRK11659 cytochrome c nitrite reductase pentaheme subunit; Provisional
Probab=26.28 E-value=29 Score=27.22 Aligned_cols=10 Identities=40% Similarity=1.066 Sum_probs=5.8
Q ss_pred ccCccccCCC
Q 030717 79 QACIGCHDGG 88 (172)
Q Consensus 79 ~~C~~CHg~~ 88 (172)
..|..||...
T Consensus 44 ~~C~~CH~~~ 53 (183)
T PRK11659 44 AACLQCHKPD 53 (183)
T ss_pred cHHHHhCcCc
Confidence 3566666643
No 78
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=24.93 E-value=78 Score=22.37 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030717 142 ARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~ 159 (172)
.+|||+|+..|+.-|...
T Consensus 34 r~Ltd~ev~~Va~~L~~~ 51 (96)
T PF11829_consen 34 RRLTDDEVAEVAAELAAR 51 (96)
T ss_dssp TTS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 679999999999998653
No 79
>TIGR01904 GSu_C4xC__C2xCH Geobacter sulfurreducens CxxxxCH...CXXCH domain. This domain occurs from three to eight times in eight different proteins of Geobacter sulfurreducens. The final CXXCH motif matches ProSite motif PS00190, the cytochrome c family heme-binding site signature, suggesting
Probab=24.56 E-value=30 Score=20.68 Aligned_cols=6 Identities=67% Similarity=1.846 Sum_probs=5.4
Q ss_pred cCcccc
Q 030717 80 ACIGCH 85 (172)
Q Consensus 80 ~C~~CH 85 (172)
.|.+||
T Consensus 37 ~C~~CH 42 (42)
T TIGR01904 37 GCNGCH 42 (42)
T ss_pred cCcccC
Confidence 699999
No 80
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=23.73 E-value=96 Score=23.19 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717 111 EDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIE 168 (172)
Q Consensus 111 ~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~ 168 (172)
.+.|...+..-++.|-.. ..|+++|+..+...+..+....|....
T Consensus 75 LdeLi~~~~~a~n~li~i-------------E~l~~~el~~~~~~~~~~~~~~~~~~~ 119 (132)
T PF04120_consen 75 LDELIRAVKEARNELIDI-------------EDLTEEELEEIRKRYERLAEQARERHD 119 (132)
T ss_pred HHHHHHHHHHHHHHhCCc-------------ccCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 445555555555566666 689999999999999998877666543
No 81
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=23.28 E-value=61 Score=20.41 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQGWPKIE 168 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~gw~~~~ 168 (172)
-.|-+.-.+.+++||..++-+|++++.
T Consensus 35 iplietgcekm~dyieelklkgyeevt 61 (62)
T PF10653_consen 35 IPLIETGCEKMTDYIEELKLKGYEEVT 61 (62)
T ss_pred cchhhhhhHHHHHHHHHHhhcchhhhc
Confidence 347788889999999999999988764
No 82
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=22.97 E-value=47 Score=26.58 Aligned_cols=8 Identities=38% Similarity=0.941 Sum_probs=4.6
Q ss_pred cCccccCC
Q 030717 80 ACIGCHDG 87 (172)
Q Consensus 80 ~C~~CHg~ 87 (172)
.|..||.+
T Consensus 86 ~C~DCH~P 93 (200)
T PRK10617 86 TCPDCHVP 93 (200)
T ss_pred cCcccCCC
Confidence 36666654
No 83
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=21.85 E-value=69 Score=27.15 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030717 110 TEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ 154 (172)
Q Consensus 110 ~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~Vaa 154 (172)
+.+.+..++..- .-|-+..|+..++.|.+.++|||++++.|++
T Consensus 176 s~~~~~dv~~~s--~~PviaSHsn~ral~~h~RNltD~~i~~ia~ 218 (309)
T cd01301 176 SERTFWDVLDIS--NAPVIASHSNARALCDHPRNLTDAQLKAIAE 218 (309)
T ss_pred CHHHHHHHHHhc--CCCEEEeccChHHhcCCCCCCCHHHHHHHHH
Confidence 344444444322 2455566778899999999999999999973
No 84
>PF03892 NapB: Nitrate reductase cytochrome c-type subunit (NapB); InterPro: IPR005591 The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase [].; PDB: 3O5A_B 3ML1_B 1OGY_L 1JNI_A.
Probab=21.73 E-value=28 Score=26.15 Aligned_cols=12 Identities=25% Similarity=0.767 Sum_probs=9.5
Q ss_pred HccCccccCCCC
Q 030717 78 RQACIGCHDGGG 89 (172)
Q Consensus 78 ~~~C~~CHg~~g 89 (172)
.+.|.+||...-
T Consensus 69 ~N~Cl~CH~~~~ 80 (133)
T PF03892_consen 69 NNKCLSCHSPEV 80 (133)
T ss_dssp EECCHHHHSTTT
T ss_pred CCcCcccCCccc
Confidence 467999999663
No 85
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=21.64 E-value=1.7e+02 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhCCC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
..+++++++++.+|+......+=
T Consensus 98 Eh~~~~~i~~~~~~~e~~a~~~~ 120 (141)
T COG5478 98 EHLKPEEIEEIRDRLEDEAGTGD 120 (141)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999998875543
No 86
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=20.95 E-value=1.1e+02 Score=24.07 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030717 142 ARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~ 159 (172)
..|||+||..=++||..+
T Consensus 74 PpLtdeqI~kQVeYli~~ 91 (176)
T PLN02289 74 PDLTDEELAKEVDYLLRN 91 (176)
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 679999999999999876
No 87
>PF14537 Cytochrom_c3_2: Cytochrome c3; PDB: 1D4C_A 1D4E_A 1D4D_A 2K3V_A 1QO8_D 2P0B_A 2OZY_A 1M64_A 1JRX_A 1QJD_A ....
Probab=20.75 E-value=45 Score=21.34 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=7.4
Q ss_pred ccCccccCCC
Q 030717 79 QACIGCHDGG 88 (172)
Q Consensus 79 ~~C~~CHg~~ 88 (172)
.+|..||+..
T Consensus 7 ~~C~~CH~~~ 16 (80)
T PF14537_consen 7 VNCVDCHGPH 16 (80)
T ss_dssp -TGGGTSSSS
T ss_pred cChhHhCCCC
Confidence 4799999743
No 88
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=20.44 E-value=35 Score=27.41 Aligned_cols=9 Identities=56% Similarity=1.287 Sum_probs=7.3
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
.-.|+.||-
T Consensus 174 ~l~CAqCHd 182 (208)
T PF07583_consen 174 RLQCAQCHD 182 (208)
T ss_pred ccchhhccC
Confidence 357999996
No 89
>PF15573 Imm27: Immunity protein 27
Probab=20.33 E-value=75 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhCCCCCcCC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQGWPKIES 169 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~gw~~~~~ 169 (172)
..+|.+++++++.||..+..+.|.+..|
T Consensus 225 tiIs~~~~~~~i~YId~Ls~k~W~~G~K 252 (259)
T PF15573_consen 225 TIISRENYKDMISYIDSLSKKNWEKGQK 252 (259)
T ss_pred ceechhHHHHHHHHHHHHhHhhhhhhhh
Confidence 6799999999999999999999987644
Done!