Query 030717
Match_columns 172
No_of_seqs 154 out of 1405
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce0_A Cytochrome C6; chloropl 99.8 2.3E-21 7.9E-26 136.3 8.3 103 67-169 2-104 (105)
2 3ph2_B Cytochrome C6; photosyn 99.8 3.4E-20 1.2E-24 125.5 7.6 85 68-164 2-86 (86)
3 1gdv_A Cytochrome C6; RED ALGA 99.8 5.1E-20 1.7E-24 124.4 6.9 84 69-164 2-85 (85)
4 3cu4_A Cytochrome C family pro 99.8 6.8E-19 2.3E-23 119.6 6.5 81 68-160 3-84 (85)
5 3dmi_A Cytochrome C6; electron 99.8 9.6E-19 3.3E-23 118.9 6.8 86 68-165 1-88 (88)
6 1c6r_A Cytochrome C6; electron 99.7 3.8E-18 1.3E-22 116.4 6.8 85 68-164 2-89 (89)
7 1ls9_A Cytochrome C6; omega lo 99.7 9.3E-18 3.2E-22 115.1 8.0 86 67-164 3-91 (91)
8 3dr0_A Cytochrome C6; photosyn 99.7 4.3E-18 1.5E-22 116.3 6.0 85 68-164 1-93 (93)
9 1cyi_A Cytochrome C6, cytochro 99.7 9.3E-18 3.2E-22 114.8 7.7 85 69-165 2-89 (90)
10 1f1f_A Cytochrome C6; heme, pr 99.7 5.5E-18 1.9E-22 115.4 6.3 85 68-164 1-89 (89)
11 3dp5_A OMCF, cytochrome C fami 99.7 4.3E-18 1.5E-22 119.7 5.7 80 68-159 17-97 (99)
12 2zon_G Cytochrome C551; nitrit 99.6 9.5E-17 3.2E-21 109.3 2.6 78 66-160 5-86 (87)
13 1gks_A Cytochrome C551; haloph 99.6 1.9E-15 6.6E-20 101.4 6.3 72 72-159 1-77 (78)
14 1wve_C 4-cresol dehydrogenase 99.6 1.3E-15 4.5E-20 102.7 5.4 73 69-161 3-75 (80)
15 1w5c_T Cytochrome C-550; photo 99.6 3.3E-15 1.1E-19 113.5 6.7 89 67-168 49-160 (163)
16 1kx2_A Mono-heme C-type cytoch 99.6 1.3E-15 4.6E-20 102.9 3.5 76 70-159 3-80 (81)
17 1w2l_A Cytochrome oxidase subu 99.5 7.8E-15 2.7E-19 101.4 6.5 78 67-159 3-98 (99)
18 2zzs_A Cytochrome C554; C-type 99.5 6.4E-16 2.2E-20 108.3 0.9 74 67-160 21-103 (103)
19 1c75_A Cytochrome C-553; heme, 99.5 5.6E-15 1.9E-19 97.1 5.0 68 72-159 2-70 (71)
20 2gc4_D Cytochrome C-L; electro 99.5 3.4E-14 1.2E-18 106.2 9.8 77 66-160 42-124 (147)
21 1mz4_A Cytochrome C550; PSII a 99.5 6.1E-15 2.1E-19 108.7 5.5 89 66-167 22-133 (137)
22 1ccr_A Cytochrome C; electron 99.5 3.5E-14 1.2E-18 101.0 8.6 80 65-160 7-111 (112)
23 1cc5_A Cytochrome C5; electron 99.5 1.1E-15 3.7E-20 104.2 0.2 73 70-159 4-83 (83)
24 1cno_A Cytochrome C552; electr 99.5 2E-15 6.9E-20 102.9 1.5 75 68-162 2-85 (87)
25 1f1c_A Cytochrome C549; dimeri 99.5 1.7E-14 5.7E-19 104.6 6.3 87 66-165 20-129 (129)
26 1c53_A Cytochrome C553; electr 99.5 1.2E-14 4E-19 97.4 4.1 69 72-159 2-79 (79)
27 3o0r_C Nitric oxide reductase 99.5 1.6E-13 5.5E-18 101.8 10.6 84 65-167 44-143 (146)
28 2c1d_B SOXX; sulfur oxidation, 99.5 6.1E-14 2.1E-18 103.4 7.0 93 64-160 20-136 (137)
29 2w9k_A Cytochrome C, cytochrom 99.5 1.3E-13 4.5E-18 98.4 8.3 79 65-160 9-113 (114)
30 1hro_A Cytochrome C2; electron 99.5 1E-13 3.5E-18 97.6 7.2 79 66-159 4-105 (106)
31 1ycc_A Cytochrome C; electron 99.5 8.8E-14 3E-18 98.2 6.8 76 67-160 5-107 (108)
32 2c8s_A Cytochrome C-L; HAEM, h 99.5 1.3E-13 4.6E-18 106.0 7.7 77 66-160 50-132 (172)
33 2exv_A Cytochrome C-551; alpha 99.4 9.4E-14 3.2E-18 93.0 5.7 70 72-159 2-81 (82)
34 2d0w_A Cytochrome CL; electron 99.4 1.9E-13 6.5E-18 104.8 8.0 77 66-160 44-126 (170)
35 2zxy_A Cytochrome C552, cytoch 99.4 4.1E-14 1.4E-18 95.3 3.5 72 72-159 2-86 (87)
36 1h32_B Cytochrome C, SOXX; ele 99.4 9.9E-14 3.4E-18 102.3 5.6 96 65-160 22-137 (138)
37 2d0s_A Cytochrome C, cytochrom 99.4 1.3E-13 4.5E-18 92.0 5.6 70 73-159 1-78 (79)
38 1i54_A Cytochrome C; zinc-porp 99.4 2.4E-13 8.3E-18 94.9 7.1 79 69-160 2-102 (103)
39 1co6_A Protein (cytochrome C2) 99.4 2.2E-13 7.6E-18 96.1 6.9 78 69-162 2-103 (107)
40 2l4d_A SCO1/SENC family protei 99.4 3.1E-13 1.1E-17 95.0 6.6 84 69-168 2-105 (110)
41 3cp5_A Cytochrome C; electron 99.4 6E-13 2.1E-17 95.8 7.3 78 64-161 28-122 (124)
42 1a56_A C-551, ferricytochrome 99.4 1.5E-13 5E-18 92.2 3.7 71 73-160 1-81 (81)
43 1e29_A Cytochrome C549; electr 99.4 5.6E-13 1.9E-17 98.6 6.6 94 66-165 22-130 (135)
44 1cch_A Cytochrome C551; electr 99.4 4E-13 1.4E-17 89.8 5.1 70 72-159 2-81 (82)
45 3c2c_A Cytochrome C2; electron 99.4 5.2E-13 1.8E-17 95.1 5.9 73 68-159 2-111 (112)
46 1c52_A Cytochrome-C552; electr 99.4 1.6E-13 5.6E-18 100.6 3.2 73 72-162 3-93 (131)
47 1qn2_A Cytochrome CH; electron 99.4 1.6E-12 5.6E-17 90.6 8.1 76 68-159 2-99 (100)
48 1c2n_A Cytochrome C2; electron 99.4 4.4E-13 1.5E-17 99.4 5.4 76 68-160 22-136 (137)
49 3mk7_C Cytochrome C oxidase, C 99.4 1.1E-12 3.7E-17 109.4 8.3 80 67-162 219-304 (311)
50 3vrd_A FCCA subunit, flavocyto 99.3 9.9E-14 3.4E-18 106.6 0.7 103 38-160 61-174 (174)
51 1jdl_A C552, cytochrome C2, IS 99.3 2E-12 6.7E-17 93.0 4.9 73 68-161 3-120 (121)
52 1ayg_A Cytochrome C-552; elect 99.3 1.9E-12 6.4E-17 86.6 4.0 67 75-159 3-79 (80)
53 1kb0_A Quinohemoprotein alcoho 99.3 1.2E-12 4.3E-17 118.8 4.1 85 65-165 588-675 (677)
54 3oa8_B SOXX; cytochrome, sulfu 99.3 6.4E-12 2.2E-16 99.7 7.4 86 64-161 92-204 (208)
55 1m70_A Cytochrome C4; electron 99.3 1.3E-12 4.6E-17 100.2 2.2 76 66-159 96-189 (190)
56 1yiq_A Quinohemoprotein alcoho 99.2 1.6E-12 5.4E-17 118.3 2.6 82 67-165 592-675 (689)
57 1kv9_A Type II quinohemoprotei 99.2 2E-12 6.7E-17 117.2 3.1 84 65-165 575-661 (668)
58 1h1o_A Cytochrome C-552; elect 99.2 3.5E-12 1.2E-16 97.3 4.1 74 66-159 96-183 (183)
59 155c_A Cytochrome C550; electr 99.2 9.9E-12 3.4E-16 92.2 6.2 99 67-169 3-128 (135)
60 1i8o_A Cytochrome C2; electron 99.2 1.2E-11 4.1E-16 88.5 5.6 71 69-159 2-113 (114)
61 2zoo_A Probable nitrite reduct 99.2 2.2E-11 7.6E-16 105.4 6.8 81 66-164 335-429 (442)
62 3m97_X Cytochrome C-552, cytoc 99.2 5.1E-11 1.7E-15 89.1 7.7 76 67-159 41-139 (140)
63 2bh4_X Cytochrome C-550; C-typ 99.2 1.5E-11 5.2E-16 91.0 4.2 81 67-164 2-123 (134)
64 3mk7_C Cytochrome C oxidase, C 99.2 2.5E-11 8.5E-16 101.2 5.4 79 67-162 129-212 (311)
65 1qks_A Cytochrome CD1 nitrite 99.1 5.6E-11 1.9E-15 106.2 7.3 82 66-161 50-132 (567)
66 1vyd_A Cytochrome C2; electron 99.1 2.5E-11 8.4E-16 87.8 3.9 75 69-160 2-115 (116)
67 1nir_A Nitrite reductase; hemo 99.1 6.1E-11 2.1E-15 104.8 6.3 82 66-161 32-114 (543)
68 2xts_B Cytochrome; oxidoreduct 99.1 1.6E-10 5.6E-15 91.2 8.0 82 65-161 30-122 (205)
69 2yev_B Cytochrome C oxidase su 98.6 1.4E-11 4.9E-16 104.0 0.0 78 71-164 237-329 (337)
70 1h1o_A Cytochrome C-552; elect 99.1 1.7E-11 5.8E-16 93.5 0.2 76 67-161 3-88 (183)
71 1cxc_A Cytochrome C2; electron 99.0 1.2E-10 4E-15 85.0 3.7 93 67-162 2-123 (124)
72 3vrd_A FCCA subunit, flavocyto 99.0 3.3E-11 1.1E-15 92.4 0.8 67 75-160 5-77 (174)
73 1m70_A Cytochrome C4; electron 98.9 6E-10 2.1E-14 85.3 4.5 74 68-161 2-90 (190)
74 1h32_A SOXA, diheme cytochrome 98.7 3.4E-09 1.2E-13 86.4 2.2 111 37-161 125-250 (261)
75 2c1d_A SOXA; sulfur oxidation, 98.7 3.7E-09 1.3E-13 86.3 2.3 82 66-160 158-252 (264)
76 3oa8_A SOXA; cytochrome, sulfu 98.7 1E-08 3.6E-13 84.3 4.2 78 70-160 53-147 (275)
77 2blf_B SORB, sulfite\:cytochro 98.6 1.8E-08 6.1E-13 68.1 3.1 61 71-159 19-80 (81)
78 3a9f_A Cytochrome C; alpha hel 98.6 1.7E-08 5.7E-13 70.2 2.0 65 68-159 25-91 (92)
79 3oa8_A SOXA; cytochrome, sulfu 98.5 1.2E-08 4.1E-13 83.9 -0.4 105 38-160 131-263 (275)
80 1jmx_A Amine dehydrogenase; ox 98.2 2.9E-07 1E-11 80.3 1.2 66 71-160 2-68 (494)
81 1zzh_A Cytochrome C peroxidase 98.1 7.9E-06 2.7E-10 68.6 7.8 21 142-162 285-305 (328)
82 2c1d_A SOXA; sulfur oxidation, 98.0 6.3E-07 2.2E-11 73.0 0.1 77 68-161 60-146 (264)
83 1e8e_A Cytochrome C''; oxidore 98.0 1.3E-06 4.3E-11 63.6 0.9 82 66-162 24-122 (124)
84 1pby_A Quinohemoprotein amine 98.0 4.7E-06 1.6E-10 72.6 4.2 65 72-160 2-67 (489)
85 1iqc_A DI-heme peroxidase; pro 98.0 6.2E-06 2.1E-10 68.6 4.5 21 142-162 265-285 (308)
86 2vhd_A Cytochrome C551 peroxid 97.9 8.8E-06 3E-10 68.2 5.0 21 142-162 282-302 (323)
87 3o5c_A Cytochrome C551 peroxid 97.9 8E-06 2.7E-10 68.4 4.0 21 142-162 273-293 (320)
88 1dw0_A Cytochrome C; asparagin 97.8 7.6E-06 2.6E-10 58.6 2.8 79 67-159 19-112 (112)
89 1h32_A SOXA, diheme cytochrome 97.8 9.2E-07 3.1E-11 71.9 -2.7 78 68-161 56-143 (261)
90 2c1v_A DI-HAEM cytochrome C pe 97.8 4.7E-05 1.6E-09 64.1 7.1 21 142-162 296-316 (338)
91 3mk7_B Cytochrome C oxidase, C 97.7 6.9E-06 2.4E-10 64.4 1.3 62 68-129 51-141 (203)
92 1nml_A DI-HAEM cytochrome C pe 97.7 7.5E-05 2.6E-09 62.5 7.1 22 142-163 282-303 (326)
93 3hq9_A Cytochrome C551 peroxid 97.6 0.00018 6.2E-09 60.8 7.8 21 142-162 304-324 (345)
94 4aan_A Cytochrome C551 peroxid 97.3 0.00031 1.1E-08 59.2 6.1 21 142-162 299-319 (341)
95 3cx5_D Cytochrome C1, heme pro 97.2 0.0013 4.3E-08 53.1 8.5 23 66-88 25-47 (248)
96 3sjl_A Methylamine utilization 97.1 0.00099 3.4E-08 56.8 7.0 27 142-168 332-358 (373)
97 2yiu_B Cytochrome C1, heme pro 97.0 0.0027 9.2E-08 51.6 8.2 21 68-88 45-65 (263)
98 1pp9_D Cytochrome C-1, cytochr 96.9 0.0023 8E-08 51.4 7.2 23 66-88 22-44 (241)
99 2fw5_A DHC, diheme cytochrome 95.4 0.014 4.6E-07 43.2 3.7 58 73-160 16-74 (139)
100 2fwt_A DHC, diheme cytochrome 95.3 0.026 8.9E-07 40.9 4.9 58 74-161 6-64 (125)
101 1zrt_D Cytochrome C1; cytochro 95.2 0.0076 2.6E-07 48.8 2.3 23 66-88 19-41 (258)
102 2qjy_B Cytochrome C1; cytochro 95.0 0.0095 3.3E-07 48.5 2.3 23 66-88 21-43 (269)
103 1jmx_A Amine dehydrogenase; ox 94.7 0.004 1.4E-07 54.5 -0.8 24 67-90 86-109 (494)
104 1iqc_A DI-heme peroxidase; pro 94.0 0.17 5.7E-06 41.7 7.6 18 144-161 133-151 (308)
105 2c1v_A DI-HAEM cytochrome C pe 93.4 0.11 3.6E-06 43.6 5.4 19 143-161 160-179 (338)
106 2vhd_A Cytochrome C551 peroxid 92.5 0.13 4.4E-06 42.7 4.5 20 142-161 145-165 (323)
107 3u99_A Diheme cytochrome C; cy 91.7 0.26 9.1E-06 36.5 5.0 57 75-160 13-69 (148)
108 3o5c_A Cytochrome C551 peroxid 89.8 0.84 2.9E-05 37.9 6.9 18 143-160 140-158 (320)
109 1zzh_A Cytochrome C peroxidase 86.2 0.3 1E-05 40.5 2.1 19 143-161 149-168 (328)
110 4aan_A Cytochrome C551 peroxid 80.7 0.25 8.7E-06 41.4 -0.6 20 67-86 45-73 (341)
111 3hq9_A Cytochrome C551 peroxid 80.6 0.77 2.6E-05 38.5 2.3 19 142-160 167-186 (345)
112 1nml_A DI-HAEM cytochrome C pe 80.2 0.77 2.6E-05 38.0 2.1 21 67-87 28-57 (326)
113 1pby_A Quinohemoprotein amine 72.1 0.41 1.4E-05 41.8 -1.7 18 69-86 88-105 (489)
114 3sjl_A Methylamine utilization 67.5 1.3 4.6E-05 37.4 0.5 21 67-87 8-37 (373)
115 3b47_A GSU0582, methyl-accepti 59.1 3.1 0.00011 29.7 1.1 12 78-89 102-113 (134)
116 3b42_A GSU0935, methyl-accepti 58.2 3.5 0.00012 29.3 1.2 10 78-87 103-112 (135)
117 1mqv_A Cytochrome C'; four-hel 49.5 14 0.00047 25.9 3.2 9 78-86 110-118 (125)
118 2j8w_A Cytochrome C'; heme, ir 45.8 6.8 0.00023 27.6 1.1 9 78-86 116-124 (129)
119 1gqa_A Cytochrome C'; electron 44.9 17 0.00058 25.6 3.1 9 78-86 116-124 (130)
120 3vrc_A Cytochrome C'; C-type c 44.2 19 0.00063 25.6 3.2 9 78-86 118-126 (131)
121 2ykz_A Cytochrome C'; electron 44.0 7 0.00024 27.5 0.9 9 78-86 113-121 (127)
122 1cpq_A Cytochrome C'; electron 43.8 7.2 0.00024 27.6 0.9 9 78-86 115-123 (129)
123 1rbl_M Ribulose 1,5 bisphospha 41.0 28 0.00097 24.1 3.6 22 138-159 14-35 (109)
124 1svd_M Ribulose bisphosphate c 40.0 31 0.0011 24.0 3.7 22 138-159 16-37 (110)
125 1wdd_S Ribulose bisphosphate c 39.8 30 0.001 24.7 3.7 22 138-159 15-36 (128)
126 1ogy_B Diheme cytochrome C NAP 37.9 24 0.00081 25.4 2.9 13 78-90 55-67 (130)
127 2kvc_A Putative uncharacterize 36.8 25 0.00086 24.2 2.7 17 142-158 37-53 (103)
128 2ccy_A Cytochrome C; electron 36.1 10 0.00035 26.7 0.7 9 78-86 115-123 (128)
129 2lky_A Uncharacterized protein 35.8 27 0.00091 24.5 2.8 17 142-158 39-55 (112)
130 3zxw_B Ribulose bisphosphate c 34.5 36 0.0012 24.0 3.3 19 141-159 16-34 (118)
131 2czs_A DHC2, cytochrome C, put 33.4 23 0.00078 23.2 2.0 13 78-90 34-48 (80)
132 1s05_A Cytochrome C-556, C556; 31.6 18 0.00061 25.5 1.4 9 78-86 114-122 (129)
133 1ehj_A Cytochrome C7; multi-he 29.2 12 0.0004 23.6 0.0 15 73-87 40-55 (68)
134 1ft5_A Cytochrome C554; heme-s 28.8 10 0.00035 29.2 -0.3 13 78-90 85-97 (211)
135 2l48_A N-acetylmuramoyl-L-alan 27.5 46 0.0016 22.1 2.7 25 135-159 53-78 (85)
136 3h34_A Cytochrome C7, cytochro 27.3 11 0.00037 23.9 -0.4 14 74-87 43-56 (70)
137 3de8_A Soluble cytochrome B562 27.0 15 0.00052 24.8 0.3 9 78-86 95-103 (106)
138 3ol3_A Putative uncharacterize 26.7 48 0.0017 22.9 2.8 46 111-160 13-60 (107)
139 1oqe_K Tumor necrosis factor r 25.5 15 0.0005 19.6 -0.0 8 79-86 15-22 (31)
140 1rwj_A Cytochrome C family pro 24.7 37 0.0013 22.0 1.9 13 75-87 53-66 (82)
141 3ml1_B NAPB, diheme cytochrome 24.4 18 0.00062 26.1 0.3 13 78-90 56-68 (135)
142 3neh_A Renal dipeptidase famil 23.4 52 0.0018 26.9 2.9 30 124-154 188-217 (318)
143 1jni_A NAPB;, diheme cytochrom 23.1 16 0.00054 26.1 -0.2 11 78-88 54-64 (123)
144 3oao_A Uncharacterized protein 23.0 45 0.0015 24.2 2.2 18 142-159 78-95 (147)
145 3h4n_A Cytochrome C7, cytochro 22.4 15 0.00053 23.2 -0.4 14 74-87 45-58 (72)
146 2m0n_A Putative uncharacterize 22.4 57 0.002 22.7 2.5 18 142-159 39-56 (112)
147 3u5c_S 40S ribosomal protein S 20.1 63 0.0022 23.5 2.5 23 142-164 59-84 (146)
No 1
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=99.85 E-value=2.3e-21 Score=136.31 Aligned_cols=103 Identities=79% Similarity=1.402 Sum_probs=83.0
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQD 146 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd 146 (172)
++++++|++||+.+|++||+.++.+...+.++..|.|++.+..+.+.|...|.+|.+.||+|.....+.++..|...||+
T Consensus 2 a~~~~~G~~l~~~~Ca~CHg~~g~g~~~g~~~~~p~l~~~~~~~~~~l~~~i~~g~~~Mp~~~~~~~~~~M~~~~~~ls~ 81 (105)
T 2ce0_A 2 TLDIQRGATLFNRACAACHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQD 81 (105)
T ss_dssp -CCHHHHHHHHHHHTTTTSGGGCCSSSTTCCSSHHHHHHTTCCSHHHHHHHHHHCBTTBCBCBTTCCSGGGBCSSCCBCH
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCcCCCCcccCCcchhhcCCCCHHHHHHHHHhCcCCCCcccccccccccccccCCCCH
Confidence 35678999999999999999888765556555678998876678999999999999999999643344455555578999
Q ss_pred HHHHHHHHHHHhhhhCCCCCcCC
Q 030717 147 EDIKLLAQFVKSQADQGWPKIES 169 (172)
Q Consensus 147 ~ei~~VaaYl~~~~~~gw~~~~~ 169 (172)
+||++|++||+++..++|+++++
T Consensus 82 ~ei~~l~~yl~~~~~~~w~~~~~ 104 (105)
T 2ce0_A 82 EEIKLLAEFVKFQADQGWPTVST 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHhhhcCCCCcCC
Confidence 99999999999999999999876
No 2
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=99.81 E-value=3.4e-20 Score=125.53 Aligned_cols=85 Identities=35% Similarity=0.668 Sum_probs=73.4
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE 147 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ 147 (172)
+++++|++||+.+|++||+.++.+...++.+..+.+..+...+.+.+...+++|.+.||+|+ ..||++
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~g~~~Mp~~~------------~~ls~~ 69 (86)
T 3ph2_B 2 ADLATGAKVFSANCAACHAGGINLVNAEKTLKKEALEKFGMNSIVAITTVVTNGKAGMPAFK------------GRLTDD 69 (86)
T ss_dssp CCHHHHHHHHHHHTHHHHCSSSCTTCSSSSCCHHHHHHTTCCSHHHHHHHHHHCBTTBCCCT------------TTSCHH
T ss_pred ccHHHHHHHHHHHhHHhCCCCCCCCCCCCccChhhHHhccCCCHHHHHHHHHhCCCCCCCcc------------cCCCHH
Confidence 46889999999999999998776555555555666666666789999999999999999997 689999
Q ss_pred HHHHHHHHHHhhhhCCC
Q 030717 148 DIKLLAQFVKSQADQGW 164 (172)
Q Consensus 148 ei~~VaaYl~~~~~~gw 164 (172)
|+++|++||.++..++|
T Consensus 70 ei~~l~~yl~~~~~~~w 86 (86)
T 3ph2_B 70 QIAAVAAYVLDQAEKGW 86 (86)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhccC
Confidence 99999999999999999
No 3
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=99.80 E-value=5.1e-20 Score=124.40 Aligned_cols=84 Identities=43% Similarity=0.734 Sum_probs=73.3
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDED 148 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~e 148 (172)
++++|++||..+|++||+.++.+..++.....|.+..++..+.+.+...+++|...||+|. ..||++|
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~g~g~~~~~~~~~~~l~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls~~e 69 (85)
T 1gdv_A 2 DLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAFG------------GRLVDED 69 (85)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSSTTSCCCHHHHHHTTCCSHHHHHHHHHHCBTTBCCCT------------TTSCHHH
T ss_pred cHHHHHHHHHHhhHhhCCCCcCCCCCCCCCCcHHHHHccCCCHHHHHHHHHhCcCCCCCCC------------CCCCHHH
Confidence 5789999999999999998877655554456788887776779999999999999999996 6899999
Q ss_pred HHHHHHHHHhhhhCCC
Q 030717 149 IKLLAQFVKSQADQGW 164 (172)
Q Consensus 149 i~~VaaYl~~~~~~gw 164 (172)
+++|++||.++..++|
T Consensus 70 i~~l~~yl~~~~~~~w 85 (85)
T 1gdv_A 70 IEDAANYVLSQSEKGW 85 (85)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhcCC
Confidence 9999999999999998
No 4
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=99.76 E-value=6.8e-19 Score=119.56 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=66.1
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC-CCCH
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA-RLQD 146 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~-~Lsd 146 (172)
+++++|++||+.+|++||+.+|.+..++..+..|.|.++...+.+.+...+++|...||+|. . .||+
T Consensus 3 g~~~~G~~ly~~~Ca~CHg~~g~g~~~~~~l~~p~l~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~~ls~ 70 (85)
T 3cu4_A 3 GSGAGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFG------------EAMIPP 70 (85)
T ss_dssp ----CHHHHHHHHTTTTSGGGCCSSSTTCCCCHHHHHHTTCCSHHHHHHHTTSCCTTSCCCC------------TTTSCH
T ss_pred ccHHHHHHHHHHHhHHhCCCCCCCCCCCCCCCchhhhhcCCCCHHHHHHHHHcCCCCCCCCC------------CCCCCH
Confidence 56789999999999999998877655444455788887766789999999999998999996 5 7999
Q ss_pred HHHHHHHHHHHhhh
Q 030717 147 EDIKLLAQFVKSQA 160 (172)
Q Consensus 147 ~ei~~VaaYl~~~~ 160 (172)
+||++|++||.+++
T Consensus 71 ~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 71 ADALKIGEYVVASF 84 (85)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
No 5
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=99.76 E-value=9.6e-19 Score=118.94 Aligned_cols=86 Identities=41% Similarity=0.694 Sum_probs=67.0
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ 145 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls 145 (172)
+|+++|++||+.+|++||+.++.+..+..++....+..+ +..+.+.|...+.+|...||+|. ..||
T Consensus 1 gd~~~G~~l~~~~C~~CHg~~g~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls 68 (88)
T 3dmi_A 1 GDVGAGEQIFNANCAACHAGGQNVIMPEKTLEKEALDQYLAGGRTEKSIISQVTGGKNAMPAFG------------GRLS 68 (88)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHHhcCCCHHHHHHHHHcCcCCCCCcC------------CCCC
Confidence 367899999999999999976654443333222333222 23478999999999999999997 6899
Q ss_pred HHHHHHHHHHHHhhhhCCCC
Q 030717 146 DEDIKLLAQFVKSQADQGWP 165 (172)
Q Consensus 146 d~ei~~VaaYl~~~~~~gw~ 165 (172)
++||++|++||.++..++|+
T Consensus 69 ~~ei~~l~~yl~~~~~~~w~ 88 (88)
T 3dmi_A 69 DEEIANVAAYVLASAEAGWE 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999995
No 6
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=99.74 E-value=3.8e-18 Score=116.36 Aligned_cols=85 Identities=32% Similarity=0.566 Sum_probs=66.9
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ 145 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls 145 (172)
+++++|++||+.+|++||+.++.+..+.+.+..+.+..+ +..+.+.|...+.+|...||+|. ..||
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls 69 (89)
T 1c6r_A 2 ADLALGKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVENGKGAMPAWS------------GTLD 69 (89)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSC
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCcCcCchhHHHHhcCCCCHHHHHHHHHcCCCCCCCCC------------CcCC
Confidence 467899999999999999987765544444433443322 23468999999999999999997 6899
Q ss_pred HHHHHHHHHHHHhhh-hCCC
Q 030717 146 DEDIKLLAQFVKSQA-DQGW 164 (172)
Q Consensus 146 d~ei~~VaaYl~~~~-~~gw 164 (172)
++|+++|++||+++. .++|
T Consensus 70 ~~ei~~l~~yl~~~~~~~~W 89 (89)
T 1c6r_A 70 DDEIAAVAAYVYDQASGDKW 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHccCCCC
Confidence 999999999999987 5667
No 7
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=99.73 E-value=9.3e-18 Score=115.12 Aligned_cols=86 Identities=30% Similarity=0.558 Sum_probs=67.9
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc--CCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~--~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~L 144 (172)
++++++|++||+.+|++||+.++.+..+++.+..+.+.. .+..+.+.|...+.+|...||+|. ..|
T Consensus 3 ~~~~~~G~~l~~~~C~~CHg~~g~g~~~~p~l~~~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~l 70 (91)
T 1ls9_A 3 AELLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPAWA------------DRL 70 (91)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSCHHHHHHHHHHCBTTBCCCT------------TTS
T ss_pred HHHHHHHHHHHHHHhHHhCCCCCCCCCCCCCCCchhHHHhccCCCCHHHHHHHHHcCcCCCcchh------------hhC
Confidence 356789999999999999998776544444444444332 123468999999999999999997 689
Q ss_pred CHHHHHHHHHHHHhhh-hCCC
Q 030717 145 QDEDIKLLAQFVKSQA-DQGW 164 (172)
Q Consensus 145 sd~ei~~VaaYl~~~~-~~gw 164 (172)
|++||++|++||+++. .++|
T Consensus 71 s~~ei~~l~~yl~~~~~~~~W 91 (91)
T 1ls9_A 71 DEDDIEAVSNYVYDQAVNSKW 91 (91)
T ss_dssp CHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccccCC
Confidence 9999999999999987 5777
No 8
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=99.73 E-value=4.3e-18 Score=116.33 Aligned_cols=85 Identities=34% Similarity=0.678 Sum_probs=65.6
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------CCCCH-HHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------GVDTE-DEIYHVTYFGKGRMPGFGEKCTPRGQCTF 140 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------~~~~~-~~l~~~i~~g~~~MP~~~~~~~~~~~~~~ 140 (172)
+|+++|++||+.+|++||+.+|.+..+.+++....+..+ +..+. +.|...+.+|...||+|.
T Consensus 1 ~d~~~G~~l~~~~C~~CHg~~g~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~g~~~Mp~~~----------- 69 (93)
T 3dr0_A 1 ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQGAMPAFG----------- 69 (93)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTTTTTSSCHHHHHHHHHHHCBTTBCCCB-----------
T ss_pred CcHHHHHHHHHHHhHHhcCCCCCCCCCCcccCcchHHHHHhhcccccccHHHHHHHHHHcCCCCCCCCC-----------
Confidence 367899999999999999988765554444333322111 12255 889999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhhhhCC-C
Q 030717 141 GARLQDEDIKLLAQFVKSQADQG-W 164 (172)
Q Consensus 141 ~~~Lsd~ei~~VaaYl~~~~~~g-w 164 (172)
..||++|+++|++||.++..++ |
T Consensus 70 -~~ls~~ei~~l~~yl~~l~~~~~w 93 (93)
T 3dr0_A 70 -GRLSDADIANVAAYIADQAENNKW 93 (93)
T ss_dssp -TTBCHHHHHHHHHHHHHHHHTTCC
T ss_pred -CCCCHHHHHHHHHHHHHHHhcCCC
Confidence 6899999999999999998665 5
No 9
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=99.73 E-value=9.3e-18 Score=114.76 Aligned_cols=85 Identities=35% Similarity=0.616 Sum_probs=68.0
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQD 146 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd 146 (172)
++++|++||+.+|++||+.++.+..++..+..+.+..+ +..+.+.|...+.+|...||+|. ..||+
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~g~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ls~ 69 (90)
T 1cyi_A 2 DLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPAWA------------DRLSE 69 (90)
T ss_dssp CHHHHHHHHHHHTHHHHGGGCCSSSTTSCSSHHHHHHHSTTCSSHHHHHHHHHHCBTTBCCCT------------TTSCH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChHHHHHHhcCCCCHHHHHHHHhcCCCCCCccc------------ccCCH
Confidence 57899999999999999987765544444444444322 23468999999999999999997 68999
Q ss_pred HHHHHHHHHHHhhh-hCCCC
Q 030717 147 EDIKLLAQFVKSQA-DQGWP 165 (172)
Q Consensus 147 ~ei~~VaaYl~~~~-~~gw~ 165 (172)
+|+++|++||+++. .++|.
T Consensus 70 ~ei~~l~~yl~~~~~~~~W~ 89 (90)
T 1cyi_A 70 EEIQAVAEYVFKQATDAAWK 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcccccCCC
Confidence 99999999999987 67885
No 10
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=99.72 E-value=5.5e-18 Score=115.37 Aligned_cols=85 Identities=38% Similarity=0.612 Sum_probs=65.7
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc----CCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR----NGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGAR 143 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~----~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~ 143 (172)
+++++|++||..+|++||+.++.+...++.+....+.. ....+.+.+...+.+|...||+|. ..
T Consensus 1 g~~~~G~~l~~~~C~~CHg~~g~g~~~~P~L~~~~~~~~l~~~~~~~~~~l~~~i~~g~~~Mp~~~------------~~ 68 (89)
T 1f1f_A 1 GDVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFN------------GR 68 (89)
T ss_dssp -CHHHHHHHHHHHTHHHHGGGCCSSSTTCCSSHHHHHHHSTTTTTCHHHHHHHHHHHCBTTBCCCT------------TT
T ss_pred CcHHHHHHHHHHHhHHhCCCCCCCCcCCCCCCHHHHHHHhhccCccCHHHHHHHHHcCCCCCCccc------------cC
Confidence 35789999999999999998876544344443222221 111237889999999999999997 68
Q ss_pred CCHHHHHHHHHHHHhhhhCCC
Q 030717 144 LQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 144 Lsd~ei~~VaaYl~~~~~~gw 164 (172)
||++|+++|++||.++..++|
T Consensus 69 ls~~ei~~l~~yl~~~~~~~w 89 (89)
T 1f1f_A 69 LSPLQIEDVAAYVVDQAEKGW 89 (89)
T ss_dssp SCHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999998
No 11
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=99.72 E-value=4.3e-18 Score=119.73 Aligned_cols=80 Identities=29% Similarity=0.486 Sum_probs=67.4
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC-CCCH
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA-RLQD 146 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~-~Lsd 146 (172)
.++++|++||+.+|++|||.+|.+..++.++..++|.++...+.+.|+..|++|.+.||+|. . .|||
T Consensus 17 ~~~~~G~~ly~~~Ca~CHg~~g~~~~p~~~~~~~~l~~~~~~~~~~l~~~i~~G~~~MP~~~------------~~~Lsd 84 (99)
T 3dp5_A 17 VPNSGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFG------------EAMIPP 84 (99)
T ss_dssp CCCCCHHHHHHHHTTTTSGGGCCSSSTTCCCCHHHHHHTTCCSHHHHHHHTTSCCTTSCCCC------------TTTSCH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCCCCCCCccChHHHHhcCccCHHHHHHHHHcCCCCCCCCC------------CCCCCH
Confidence 45678999999999999998775544555555668877766789999999999999999996 5 7999
Q ss_pred HHHHHHHHHHHhh
Q 030717 147 EDIKLLAQFVKSQ 159 (172)
Q Consensus 147 ~ei~~VaaYl~~~ 159 (172)
+||++|++||++.
T Consensus 85 ~ei~~l~~Yi~~~ 97 (99)
T 3dp5_A 85 ADALKIGEYVVAS 97 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 12
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=99.62 E-value=9.5e-17 Score=109.29 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=59.0
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA 142 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~ 142 (172)
..+++++|++||+.+|++|||.++.+. +. +|++.+.. ..+.+.+...+.+|.+.||+|. .
T Consensus 5 ~~~~~~~G~~l~~~~C~~CHg~~~~g~-~~----~~~l~~~~~~~~~~~~~~~~~i~~G~~~Mp~~~------------~ 67 (87)
T 2zon_G 5 PAQLDPAGEKLYRSACVVCHASGVANA-PK----LGDKQAWAPFLAQGADALLATVLKGKGAMPPRG------------G 67 (87)
T ss_dssp --CCCHHHHHHHHHTTHHHHTTTGGGC-CC----TTCHHHHHHHHHHCHHHHHHHHHHCBTTBCGGG------------G
T ss_pred chhhhhHHHHHHHHHhHHHcCCCCCCC-CC----CCCHHHHHHHHhcCHHHHHHHHHcCcCCCCCCC------------C
Confidence 456788999999999999999876532 11 23333211 1257788899999999999996 5
Q ss_pred -CCCHHHHHHHHHHHHhhh
Q 030717 143 -RLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 143 -~Lsd~ei~~VaaYl~~~~ 160 (172)
.||++|+++|++||.++.
T Consensus 68 ~~ls~~ei~~l~~yl~~~~ 86 (87)
T 2zon_G 68 TAADEATLRAAVAYMMDAA 86 (87)
T ss_dssp CCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 799999999999999874
No 13
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=99.59 E-value=1.9e-15 Score=101.37 Aligned_cols=72 Identities=29% Similarity=0.512 Sum_probs=55.4
Q ss_pred hHHHHHHc----cCccccCCCCCCCCCCCCccc-hhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 030717 72 KGVSLFRQ----ACIGCHDGGGNVIQPGATLFL-KDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQD 146 (172)
Q Consensus 72 ~G~~lf~~----~C~~CHg~~g~~~~~~~~~~~-p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd 146 (172)
.|++||+. +|++|||.++.+ ++.+.. ..+... ..+.+.+...+++|.+.||+|+ ..|||
T Consensus 1 ~G~~ly~~g~~~~C~~CHg~~g~g---~P~l~~~~~~~~~-~~~~~~l~~~i~~G~~~Mp~~~------------~~Lsd 64 (78)
T 1gks_A 1 DGESIYINGTAPTCSSCHDRGVAG---APELNAPEDWADR-PSSVDELVESTLAGKGAMPAYD------------GRADR 64 (78)
T ss_dssp CHHHHHHTSSSSCSHHHHTTTGGG---CCCTTCHHHHHTS-CCCHHHHHHHHHHCBTTBCCCB------------TTBCH
T ss_pred CHHHHHhhccccchhhhCCCCCCC---CCCCCCHHHhhhc-cCCHHHHHHHHHcCCCCCCCCC------------CCCCH
Confidence 48999986 999999988753 222211 122222 2478999999999999999997 68999
Q ss_pred HHHHHHHHHHHhh
Q 030717 147 EDIKLLAQFVKSQ 159 (172)
Q Consensus 147 ~ei~~VaaYl~~~ 159 (172)
+||++|++||+++
T Consensus 65 ~ei~~l~~yi~~~ 77 (78)
T 1gks_A 65 EDLVKAIEYMLST 77 (78)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 14
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=99.59 E-value=1.3e-15 Score=102.66 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=58.3
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDED 148 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~e 148 (172)
++++|++||+.+|++||+.++. ..|.|.+. ..+.+.|...|++|.+.||+|. ...||++|
T Consensus 3 ~~~~G~~l~~~~C~~CHg~~gg--------~~P~L~~~-~~~~~~l~~~i~~g~~~Mp~~~-----------~~~ls~~e 62 (80)
T 1wve_C 3 QWGSGKNLYDKVCGHCHKPEVG--------VGPVLEGR-GLPEAYIKDIVRNGFRAMPAFP-----------ASYVDDES 62 (80)
T ss_dssp CSSSHHHHHHHTTHHHHSTTTC--------SSCCCTTS-CCCHHHHHHHHHHCBTTBCCCC-----------TTTSCHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCC--------CCCCCCCC-CCCHHHHHHHHHhCcCCCCCCc-----------ccCCCHHH
Confidence 5678999999999999996531 13445432 2379999999999999999993 15799999
Q ss_pred HHHHHHHHHhhhh
Q 030717 149 IKLLAQFVKSQAD 161 (172)
Q Consensus 149 i~~VaaYl~~~~~ 161 (172)
+++|++||.++..
T Consensus 63 i~~l~~yl~~~~~ 75 (80)
T 1wve_C 63 LTQVAEYLSSLPA 75 (80)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCcC
Confidence 9999999999853
No 15
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=99.57 E-value=3.3e-15 Score=113.49 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=66.7
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCC------------------CCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGK------------------GRMP 126 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~------------------~~MP 126 (172)
.+++++|++||..+|++||+.++.+..+...+..+.+.+.. ..+.+.|...+.++. ..||
T Consensus 49 ~~~~~~G~~lf~~~Ca~CHg~~g~g~~p~~~l~~~~l~g~~p~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~~~Mp 128 (163)
T 1w5c_T 49 EKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFP 128 (163)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGCCSSSTTSCCCHHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBCTTTSCCSTTTTTSG
T ss_pred HHHHHHHHHHHHHhhHHhCCCCCCCCCCCcCCCchhhccCCCCcccHHHHHHHHhCccccccchhhhhccccccccCcCC
Confidence 35678999999999999999877655444444567776531 336788888887742 2588
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh--CC-CCCcC
Q 030717 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD--QG-WPKIE 168 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~--~g-w~~~~ 168 (172)
+| ..|||+|+++|++||.++.. ++ |++-+
T Consensus 129 ~~-------------~~Lsd~ei~~laaYl~sl~~~~~~~w~~g~ 160 (163)
T 1w5c_T 129 KM-------------RNLTEKDLVAIAGHILVEPKILGDKWGGGK 160 (163)
T ss_dssp GG-------------TTCCHHHHHHHHHHHHHHHHHHGGGGTTCS
T ss_pred CC-------------CCCCHHHHHHHHHHHHHcccccCCCCCCCc
Confidence 77 46999999999999999864 44 98643
No 16
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=99.56 E-value=1.3e-15 Score=102.86 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCc--cchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATL--FLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDE 147 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~--~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ 147 (172)
+..|++||..+|++|||.++.+....... ..|.+. .+.+.+.+.+.+|.+.||+|+.. ..|||+
T Consensus 3 ~~~G~~ly~~~Ca~CHg~~~~g~p~~~~~~~~~~~l~----~~~~~l~~~i~~G~~~Mp~~~~~----------~~Lsd~ 68 (81)
T 1kx2_A 3 LQDAEAIYNKACTVCHSMGVAGAPKSHNTADWEPRLA----KGVDNLVKSVKTGLNAMPPGGMC----------TDCTDE 68 (81)
T ss_dssp CSCHHHHHHHSTTSSTTTTGGGCCCTTCSTTTHHHHT----TCSTTHHHHHHHTCTTSCGGGGC----------SSCCHH
T ss_pred cccHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhhhh----cCHHHHHHHHHhCcCCCCCCCCC----------CCCCHH
Confidence 35799999999999999765432110000 013342 14567888899999999999610 379999
Q ss_pred HHHHHHHHHHhh
Q 030717 148 DIKLLAQFVKSQ 159 (172)
Q Consensus 148 ei~~VaaYl~~~ 159 (172)
||++|++||.++
T Consensus 69 ei~~l~~Yi~~~ 80 (81)
T 1kx2_A 69 DYKAAIEFMSKA 80 (81)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHc
Confidence 999999999876
No 17
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=99.55 E-value=7.8e-15 Score=101.44 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=58.1
Q ss_pred hhhHHhHHHHHHcc-CccccCCCCCCCCCCCCccchhhhcCC---------CCCHHHHHHHHHhCCC--------CCCCC
Q 030717 67 TVDIQKGVSLFRQA-CIGCHDGGGNVIQPGATLFLKDLQRNG---------VDTEDEIYHVTYFGKG--------RMPGF 128 (172)
Q Consensus 67 ~~d~~~G~~lf~~~-C~~CHg~~g~~~~~~~~~~~p~l~~~~---------~~~~~~l~~~i~~g~~--------~MP~~ 128 (172)
++++++|++||..+ |++||+.+|.+ ..++. ++.+.+.. .++.+.|.+.|.+|.. .||+|
T Consensus 3 ~~~~~~G~~l~~~~~C~~CHg~~g~~-~~gp~--l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~g~~~~Mp~~ 79 (99)
T 1w2l_A 3 MPLAELGARLYREKACFSCHSIDGSR-LVGPS--FKGLYGSTRTFEDGTTAVADENYLRESILQPGAKVVQGYPNVMPAS 79 (99)
T ss_dssp CCHHHHHHHHHHHTSGGGTCCSSSCC-SSSCC--STTCTTCEEEBTTSCEEECCHHHHHHHHHSTTSSCBTTSCSCCCGG
T ss_pred cccHHHHHHHHhhCChhhcCCCCCCC-CCCCC--cccccccccccCCCCcccCCHHHHHHHHHccCccccccccccCccc
Confidence 35788999999888 99999987642 11222 23332210 2369999999999863 69998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
. ..||++|+++|++||+++
T Consensus 80 ~------------~~ls~~ei~~l~~yl~sl 98 (99)
T 1w2l_A 80 Y------------ASLSEREVAALIEFIKQQ 98 (99)
T ss_dssp G------------GGCCHHHHHHHHHHHHTC
T ss_pred c------------ccCCHHHHHHHHHHHHHc
Confidence 6 679999999999999986
No 18
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=99.54 E-value=6.4e-16 Score=108.29 Aligned_cols=74 Identities=27% Similarity=0.363 Sum_probs=54.5
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCC--C----CCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGK--G----RMPGFGEKCTPRGQ 137 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~--~----~MP~~~~~~~~~~~ 137 (172)
.+++++|+++|+ +|++||+.+|.+..+ ..|+|.+. +.+.+...+ .+|. + .||+|.
T Consensus 21 ~~~~~~G~~l~~-~C~~CHg~~g~g~~~----~~p~L~g~---~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~-------- 84 (103)
T 2zzs_A 21 AGDAAAGQAKAA-VCAACHGADGNATIP----GYPNLKGQ---NEQYIVSSIKAYKNKERSGGLAAVMQAQA-------- 84 (103)
T ss_dssp -CCHHHHHHHTT-TTHHHHCTTSCCCST----TCCCCTTC---CHHHHHHHHHHHHTTCBCSTTHHHHHHHH--------
T ss_pred cCCHHHHHHHHH-HHHhhcCCCCCCCCC----CCCCCCCC---CHHHHHHHHHHHHcCCCCCCcccchHHHH--------
Confidence 578899999998 999999988764332 25666554 455555554 3442 2 699986
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..|||+|+++|++||.+++
T Consensus 85 ----~~ls~~ei~~l~~yl~~l~ 103 (103)
T 2zzs_A 85 ----SLLSDDDIANLAAYYSSLK 103 (103)
T ss_dssp ----TTCCHHHHHHHHHHHHHC-
T ss_pred ----hhCCHHHHHHHHHHHHhCC
Confidence 6899999999999999863
No 19
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=99.54 E-value=5.6e-15 Score=97.07 Aligned_cols=68 Identities=24% Similarity=0.511 Sum_probs=54.8
Q ss_pred hHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 030717 72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIK 150 (172)
Q Consensus 72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~ 150 (172)
+|++||..+|++||+.++.+.. + |+|.+. ...+.+.|...+.+|.+.||+ . .||++|++
T Consensus 2 ~G~~l~~~~C~~CHg~~g~g~~-g-----P~L~~~~~~~~~~~l~~~i~~g~~~Mp~-~-------------~ls~~ei~ 61 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDLTGAS-A-----PAIDKAGANYSEEEILDIILNGQGGMPG-G-------------IAKGAEAE 61 (71)
T ss_dssp CHHHHHHHHTHHHHCTTSSCSS-S-----CCCTTGGGTSCHHHHHHHHHHCBTTBCS-C-------------SSCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCCCC-C-----CCCccccccCCHHHHHHHHHhCCCCCCC-C-------------CCCHHHHH
Confidence 5999999999999998776422 2 444332 234799999999999999999 4 59999999
Q ss_pred HHHHHHHhh
Q 030717 151 LLAQFVKSQ 159 (172)
Q Consensus 151 ~VaaYl~~~ 159 (172)
+|++||.++
T Consensus 62 ~l~~yl~~~ 70 (71)
T 1c75_A 62 AVAAWLAEK 70 (71)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 999999986
No 20
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=99.54 E-value=3.4e-14 Score=106.17 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=60.5
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-----CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-----VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCT 139 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-----~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~ 139 (172)
...++++|++||..+|++|||.+|.+.. + |+|.+.. ..+.+.|...|.+|+ +.||+|.
T Consensus 42 ~~~~~~~G~~l~~~~Ca~CHg~~g~g~~-g-----P~L~~~~~~~~~~~~~~~l~~~i~~G~~~~Mp~~~---------- 105 (147)
T 2gc4_D 42 DPEILPEAEELYAGMCSGCHGHYAEGKI-G-----PGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMW---------- 105 (147)
T ss_dssp CTTTHHHHHHHHHHHTHHHHCTTSSCSS-S-----CCCSSSCCSSGGGGSHHHHHHHHHHCCSTTCCCCT----------
T ss_pred CHHHHHHHHHHHHhhcHHhCCCCCCCCC-C-----CCCCcccccccCcCCHHHHHHHHHcCCCCCCCCCC----------
Confidence 4467899999999999999998776432 2 3333211 236888999999995 5899997
Q ss_pred CCCCCCHHHHHHHHHHHHhhh
Q 030717 140 FGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 140 ~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..||++||++|++||+++.
T Consensus 106 --~~ls~~ei~~l~~Yl~~l~ 124 (147)
T 2gc4_D 106 --GSLTLDEMLRTMAWVRHLY 124 (147)
T ss_dssp --TTSCHHHHHHHHHHHHHTC
T ss_pred --CCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999984
No 21
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=99.53 E-value=6.1e-15 Score=108.70 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=63.2
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhC------------------CCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFG------------------KGRM 125 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g------------------~~~M 125 (172)
..+++++|++||..+|++||+.++.+..+...+..+.|.+.. .++.+.|...+.++ ...|
T Consensus 22 ~~~~~~~G~~ly~~~Ca~CHg~~g~g~~~~~~l~~~~l~~~~p~~~~~~~l~~~l~~p~~~~~~~~~~~~~~~~~~~~~M 101 (137)
T 1mz4_A 22 TEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIF 101 (137)
T ss_dssp CHHHHHHHHHHHHHHTHHHHGGGCCTTCGGGCCCHHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBCTTTSCCGGGTTTS
T ss_pred ChHHHHHHHHHHHhhhHHhcCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhCchhhcccchhhhcccccccCCCC
Confidence 346788999999999999999877654332223345665432 23478888888762 3469
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh---CCCCCc
Q 030717 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD---QGWPKI 167 (172)
Q Consensus 126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~---~gw~~~ 167 (172)
|+|. .|||+||++|++||.++.. .+|+.-
T Consensus 102 P~~~-------------~Lsd~ei~alaaYl~~~~~~~~~~w~~~ 133 (137)
T 1mz4_A 102 PKMR-------------NLTEKDLVAIAGHILVEPKILGDKWGGG 133 (137)
T ss_dssp GGGT-------------TCCHHHHHHHHHHHHHHHHHHGGGCC--
T ss_pred CCCC-------------CCCHHHHHHHHHHHHHccccCCcccccC
Confidence 9984 5999999999999999863 348753
No 22
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=99.52 E-value=3.5e-14 Score=100.96 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=57.1
Q ss_pred CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC---------------------CCCCHHHHHHHHHhCC-
Q 030717 65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN---------------------GVDTEDEIYHVTYFGK- 122 (172)
Q Consensus 65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~---------------------~~~~~~~l~~~i~~g~- 122 (172)
...+++++|++||+.+|++||+.++.+... ..|+|.+. ..++.+.|.+.+.+++
T Consensus 7 ~~~~~~~~G~~lf~~~C~~CHg~~g~g~~~----~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~ 82 (112)
T 1ccr_A 7 APPGNPKAGEKIFKTKCAQCHTVDKGAGHK----QGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXK 82 (112)
T ss_dssp SCCCCHHHHHHHHHHHTTTTCCCSTTCCCS----SSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHH
T ss_pred cccccHHHHHHHHHhhcHHhCCCCCCCCCC----CCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccc
Confidence 345788999999998999999987653211 12222221 1247888999988763
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 123 ---GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 123 ---~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
+.|++|. ..||++|+++|++||+++.
T Consensus 83 ~~~g~~m~~~------------~~ls~~ei~~l~aYl~~l~ 111 (112)
T 1ccr_A 83 YIPGTKMVFP------------GLXKPQERADLISYLKEAT 111 (112)
T ss_dssp HSTTCCCCCC------------CCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCC------------CCCCHHHHHHHHHHHHHcC
Confidence 3566675 5679999999999999874
No 23
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=99.52 E-value=1.1e-15 Score=104.20 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=52.6
Q ss_pred HHhHHHHHHccCccccCCCCCCCCCCCCccc-----hhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCC--
Q 030717 70 IQKGVSLFRQACIGCHDGGGNVIQPGATLFL-----KDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGA-- 142 (172)
Q Consensus 70 ~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~-----p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~-- 142 (172)
+..|++||+.+|++||+.++.+. +.+.. +.+... .+.+.+...+.+|.+.||+|+ .
T Consensus 4 ~~~G~~ly~~~Ca~CHg~~~~G~---p~~~~~~~~~~~l~~~--~~~~~l~~~i~~G~~~MP~~~------------~~~ 66 (83)
T 1cc5_A 4 ARSGDDVVAKYCNACHGTGLLNA---PKVGDSAAWKTRADAK--GGLDGLLAQSLSGLNAMPPKG------------TCA 66 (83)
T ss_dssp SSCSHHHHHHTTHHHHTTTTTTC---CCTTCHHHHHHHHHHH--TSSTTTHHHHHHCBTTBCSSS------------SCS
T ss_pred hHHHHHHHHHHHHHHCcCCCCCC---CCCCCHHHHHHHhhcc--cCHHHHHHHHHcCccCCCCCC------------CCC
Confidence 35699999999999999875431 11100 112110 024467888999999999997 4
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030717 143 RLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~~ 159 (172)
.|||+||++|++||+++
T Consensus 67 ~Lsd~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SCCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 69999999999999875
No 24
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=99.52 E-value=2e-15 Score=102.88 Aligned_cols=75 Identities=27% Similarity=0.384 Sum_probs=54.7
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC------CCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG------RMPGFGEKCTPRGQC 138 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~------~MP~~~~~~~~~~~~ 138 (172)
+++++|+.||. +|++||+.+|.+..+ ..|.|.+. +...+.. .+.+|.. .||+|.
T Consensus 2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~----~~P~L~~~---~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~--------- 64 (87)
T 1cno_A 2 GDIEAGKAKAA-VCAACHGQNGISQVP----IYPNLAGQ---KEQYLVAALKAYKAGQRQGGQAPVMQGQA--------- 64 (87)
T ss_dssp CCHHHHHHHGG-GTHHHHCTTSCCSST----TSCCCTTC---CHHHHHHHHHHHHTTCBCSTTHHHHHHHH---------
T ss_pred ccHHHHHHHHH-HHHhhcCCCCCCCCC----CCCCCCCC---CHHHHHHHHHHHHcCCcCCCcccccHHHH---------
Confidence 46889999998 999999988765432 25666543 3443333 3456632 699996
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhC
Q 030717 139 TFGARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 139 ~~~~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++||++|++||+++..+
T Consensus 65 ---~~ls~~ei~~l~~yl~~l~~~ 85 (87)
T 1cno_A 65 ---TALSDADIANLAAYYASNPAA 85 (87)
T ss_dssp ---TTCCHHHHHHHHHHHHHSCTT
T ss_pred ---hhCCHHHHHHHHHHHHhCCcc
Confidence 689999999999999998643
No 25
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=99.51 E-value=1.7e-14 Score=104.60 Aligned_cols=87 Identities=21% Similarity=0.357 Sum_probs=62.6
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--CCCCHHHHHHHHHhCC------------------CCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--GVDTEDEIYHVTYFGK------------------GRM 125 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--~~~~~~~l~~~i~~g~------------------~~M 125 (172)
..+++++|++||+.+|++||+.++.+..+......+.+.+. ..++.+.|...+.++. ..|
T Consensus 20 ~~~~~~~G~~lf~~~Ca~CHg~~g~~~gP~l~~~~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~M 99 (129)
T 1f1c_A 20 SLKEIKKGQQVFNAACAQCHALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDIF 99 (129)
T ss_dssp CHHHHHHHHHHHHHHTHHHHGGGCCTTCSSSCSSHHHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCTTTSCSTTCTTTC
T ss_pred CcccHHHHHHHHHhhhHHhcCCCCCCCCCCcccCHHHHHhcCCccchHHHHHHHHhCCcccccchhHhhhhhcccCCCCC
Confidence 45678999999999999999976553322211123444433 2457888999998753 268
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCC
Q 030717 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWP 165 (172)
Q Consensus 126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~ 165 (172)
|+| ..||++||++|++||.++. .++|.
T Consensus 100 p~~-------------~~Ls~~ei~~l~~Yl~~l~~~~~~~w~ 129 (129)
T 1f1c_A 100 PKM-------------RNISEDDLYNVAGYILLQPKVRGEQWG 129 (129)
T ss_dssp GGG-------------SSCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCC-------------CCCCHHHHHHHHHHHHHcCccccccCC
Confidence 888 3699999999999999986 35673
No 26
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=99.50 E-value=1.2e-14 Score=97.42 Aligned_cols=69 Identities=23% Similarity=0.498 Sum_probs=51.4
Q ss_pred hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHH---hCC------CCCCCCCCCCCCCCCCCCCC
Q 030717 72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTY---FGK------GRMPGFGEKCTPRGQCTFGA 142 (172)
Q Consensus 72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~---~g~------~~MP~~~~~~~~~~~~~~~~ 142 (172)
+|++||.. |++|||.+|.+... ...|.|.+. +.+.+...+. +|. ..||+|. .
T Consensus 2 ~G~~ly~~-Ca~CHg~~g~g~~~---~~~P~L~g~---~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~------------~ 62 (79)
T 1c53_A 2 DGAALYKS-CVGCHGADGSKQAM---GVGHAVKGQ---KADELFKKLKGYADGSYGGEKKAVMTNLV------------K 62 (79)
T ss_pred cHHHHHHH-HHhccCCCCCCCCC---CCCCcCCCC---CHHHHHHHHHHHHcCCCCCCcccchHHHH------------h
Confidence 69999987 99999988775331 125677654 5666666554 553 2799996 6
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030717 143 RLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~~ 159 (172)
.|||+||++|++||+++
T Consensus 63 ~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 63 RYSDEEMKAMADYMSKL 79 (79)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 89999999999999875
No 27
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=99.50 E-value=1.6e-13 Score=101.83 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=59.7
Q ss_pred CchhhHHhHHHHHH-ccCccccCCCCCCCCCCCCccchhhhcCC-CCCH-----HHHHHHHHhCC------CCCCCCCCC
Q 030717 65 AQTVDIQKGVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTE-----DEIYHVTYFGK------GRMPGFGEK 131 (172)
Q Consensus 65 a~~~d~~~G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~-----~~l~~~i~~g~------~~MP~~~~~ 131 (172)
...+++++|++||+ .+|++||+.+|.+...+ |+|.+.. .... +.+...+.++. ..||.|
T Consensus 44 ~~~~~~~~G~~l~~~~~C~~CH~~~g~g~~~g-----P~L~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~~Mp~~--- 115 (146)
T 3o0r_C 44 AMSAAVVRGKLVWEQNNCVGCHTLLGEGAYFA-----PELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQF--- 115 (146)
T ss_dssp GCCHHHHHHHHHHHHHTGGGTSEETTEECSSS-----CBCSSGGGGTTHHHHHHHHHHHHHHHCCCCCTTSCCCCCC---
T ss_pred CCchHHHHHHHHHHhCCCcccCCCcCCCCCCC-----CCchhhhhhcccccchHHHHHHHHhCcccCCCCCCCCCCC---
Confidence 34567899999998 67999999876643222 3333221 1233 67888888743 369998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhh---hCCCCCc
Q 030717 132 CTPRGQCTFGARLQDEDIKLLAQFVKSQA---DQGWPKI 167 (172)
Q Consensus 132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~---~~gw~~~ 167 (172)
. |||+|+++|++||+++. .++||.-
T Consensus 116 ----------~-Ls~~ei~~l~ayl~~l~~~~~~~wP~~ 143 (146)
T 3o0r_C 116 ----------H-LSEGQVDDLAEFLKWSSKIDTNQWPPN 143 (146)
T ss_dssp ----------C-CCHHHHHHHHHHHHHHTTSCCSSCSSS
T ss_pred ----------C-cCHHHHHHHHHHHHHhccCccCCCCCC
Confidence 3 99999999999999775 6689853
No 28
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=99.48 E-value=6.1e-14 Score=103.42 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=63.4
Q ss_pred cCchhhHHhHHHHHH----ccCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHhCC-----CCCCCCCCC--
Q 030717 64 LAQTVDIQKGVSLFR----QACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYFGK-----GRMPGFGEK-- 131 (172)
Q Consensus 64 ~a~~~d~~~G~~lf~----~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g~-----~~MP~~~~~-- 131 (172)
.+..+++.+|++||. .+|++||+.++.+.........|+|.+.+ .++.+.|...|.+|. ..||.|...
T Consensus 20 ~~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~~~~~~l~~~i~~p~~~~~~~~Mp~~~~~~~ 99 (137)
T 2c1d_B 20 TGAPGNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDRWTEAQLRGIVANAKMTFEGTFMPAFYKVDG 99 (137)
T ss_dssp SSSCCCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHHHSCHHHHHHHHHHGGGTSTTCSSCCSSCCSC
T ss_pred cCCCCCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhhccCHHHHHHHHcCccccCCCcccCccccccc
Confidence 344568999999998 89999999876532211112245665421 247888999998885 369988510
Q ss_pred ------------CCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 132 ------------CTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 132 ------------~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
-||. +...||++||++|++||.++.
T Consensus 100 ~~~~g~~~~~~~~Mp~----~~~~Ls~~ei~~l~aYl~sl~ 136 (137)
T 2c1d_B 100 FVRPGDGFSGKAGAEP----LAPILNAQQIEDVVAFLVTLK 136 (137)
T ss_dssp CSSBBSTTSSSBCCSS----CCCSSCHHHHHHHHHHHHTCC
T ss_pred cccccccccccccChh----hhcCCCHHHHHHHHHHHHHcc
Confidence 1111 123799999999999999874
No 29
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=99.47 E-value=1.3e-13 Score=98.38 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=56.5
Q ss_pred CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC--------------------C-CCCHHHHHHHHHhCC-
Q 030717 65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN--------------------G-VDTEDEIYHVTYFGK- 122 (172)
Q Consensus 65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~--------------------~-~~~~~~l~~~i~~g~- 122 (172)
...+++++|++||..+|++||+.++.+... ..|+|.+. + .++.+.|.+.+.++.
T Consensus 9 ~~~~~~~~G~~lf~~~C~~CH~~~g~g~~~----~gP~L~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~l~~~i~~p~~ 84 (114)
T 2w9k_A 9 LPPGDAARGEKLFKGRAAQCHTANQGGANG----VGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPXK 84 (114)
T ss_dssp CCCCCHHHHHHHHHHHTTTTCCCSTTCCCS----SSCCCTTCTTCBTTCCTTCCCCHHHHHCCCBCCHHHHHHHHHCHHH
T ss_pred CCCccHHHHHHHHHhhchhhCCCCCCCCCC----CCCCcccccCccccccccccccHhHHhcCCccCHHHHHHHHHchhh
Confidence 345678999999998999999987653211 12222221 1 257888999887652
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 123 ----GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 123 ----~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..|| |. ..||++|+++|++||+++.
T Consensus 85 ~~~g~~Mp-~~------------~~ls~~ei~~l~aYl~sl~ 113 (114)
T 2w9k_A 85 FMPGTKMS-FA------------GMKKPQERADVIAYLETLK 113 (114)
T ss_dssp HSTTCCCC-CC------------CCCCHHHHHHHHHHHHTCC
T ss_pred hcCCCccc-cc------------ccCCHHHHHHHHHHHHHcc
Confidence 3687 64 6799999999999999874
No 30
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=99.47 E-value=1e-13 Score=97.64 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=54.9
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------------------CCCCHHHHHHHHHhCC-----
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------------------GVDTEDEIYHVTYFGK----- 122 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------------------~~~~~~~l~~~i~~g~----- 122 (172)
..+++++|++||..+|++||+.++.+...++.+. .+.+. ..++.+.|...|.++.
T Consensus 4 ~~~~~~~G~~lf~~~C~~CH~~~g~~~~~gP~L~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g 81 (106)
T 1hro_A 4 PPGDPVEGKHLFHTICITCHTDIKGANKVGPSLY--GVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPG 81 (106)
T ss_dssp CCCCHHHHHHHHTTTGGGTCCSSTTCBSSSCCCT--TCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred ccccHHHHHHHHHcchhhhCCCCCCCCCCCCCCC--CccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCC
Confidence 4568899999999999999998754222222211 11100 1257888999887753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 123 GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 123 ~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
..|| |. ..+|++|+++|++||+++
T Consensus 82 ~~Mp-~~------------~~~~~~ei~~l~aYl~sl 105 (106)
T 1hro_A 82 TKMG-YP------------GQPDPQKRADIIAYLETL 105 (106)
T ss_dssp CCCC-CC------------CCCCHHHHHHHHHHHTTC
T ss_pred CCCC-CC------------CCCCHHHHHHHHHHHHhc
Confidence 3688 64 556899999999999876
No 31
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=99.47 E-value=8.8e-14 Score=98.16 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=54.8
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCC-CCCCCccchhhhcC---------------------CCCCHHHHHHHHHhCC--
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVI-QPGATLFLKDLQRN---------------------GVDTEDEIYHVTYFGK-- 122 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~p~l~~~---------------------~~~~~~~l~~~i~~g~-- 122 (172)
.+++++|++||+.+|++||+.++.+. ..+ |+|.+. ..++.+.|...+.++.
T Consensus 5 ~~~~~~G~~lf~~~C~~CH~~~g~g~~~~g-----P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 79 (108)
T 1ycc_A 5 AGSAKKGATLFKTRCLQCHTVEKGGPHKVG-----PNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKY 79 (108)
T ss_dssp CCCHHHHHHHHHHHTTTTCCCSTTCCCCSS-----CCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHH
T ss_pred cccHHHHHHHHHhhCcccCCCCCCCCCCCC-----CChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhh
Confidence 46789999999888999999876531 112 222211 1257888999888763
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 123 ---GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 123 ---~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..|| |. ..+|++|+++|++||.++.
T Consensus 80 ~~~~~Mp-~~------------~l~s~~ei~~l~aYl~sl~ 107 (108)
T 1ycc_A 80 IPGTKMA-FG------------GLKKEKDRNDLITYLKKAC 107 (108)
T ss_dssp STTCCCC-CC------------CCCCHHHHHHHHHHHHHHC
T ss_pred cCCcccC-CC------------CCCCHHHHHHHHHHHHHhc
Confidence 3788 74 4458999999999999874
No 32
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.45 E-value=1.3e-13 Score=106.03 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=61.2
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc----CC-CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR----NG-VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCT 139 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~----~~-~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~ 139 (172)
...++++|++||..+|++|||.+|.+.. + |+|.+ ++ ..+.+.|...|.+|+ +.||+|.
T Consensus 50 ~~~~~~~G~~lf~~~Ca~CHg~~g~G~~-g-----P~L~~~~~~~~~~~~~~~l~~~i~~G~~g~MP~~~---------- 113 (172)
T 2c8s_A 50 DKSCLRNGESLFATSCSGCHGHLAEGKL-G-----PGLNDNYWTYPSNTTDVGLFATIFGGANGMMGPHN---------- 113 (172)
T ss_dssp CHHHHHHHHHHHHHHTHHHHCTTSSCSS-S-----CCSSSSCCSSGGGGSHHHHHHHHHTCTTSSSCSCC----------
T ss_pred CHHHHHHHHHHHHhhhHHhCCCCCCCCC-C-----CCCccccccccccCCHHHHHHHHHhCCCCCCCCCC----------
Confidence 4567899999999999999998876432 2 33432 21 236888999999996 5899997
Q ss_pred CCCCCCHHHHHHHHHHHHhhh
Q 030717 140 FGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 140 ~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..||++||++|++||+++.
T Consensus 114 --~~Lsd~ei~~laaYl~sl~ 132 (172)
T 2c8s_A 114 --ENLTPDEMLQTIAWIRHLY 132 (172)
T ss_dssp --CCSCHHHHHHHHHHHHHTC
T ss_pred --CCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999885
No 33
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=99.45 E-value=9.4e-14 Score=93.02 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=53.0
Q ss_pred hHHHHHH-ccCccccCCCCCCCCCCCCccchhhhcC-C--CCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCC
Q 030717 72 KGVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQRN-G--VDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFG 141 (172)
Q Consensus 72 ~G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~--~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~ 141 (172)
+|++||. .+|++||+.++.+. ++ .++.+.+. . ..+.+.|.+.|++|.. .||+|
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g~--gp--~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~------------- 64 (82)
T 2exv_A 2 DPEVLAKNKGCVACHAIDTKMV--GP--AYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPN------------- 64 (82)
T ss_dssp CHHHHHHHTTGGGTCCSSSCCS--SC--CHHHHHHHHTTCTTHHHHHHHHHHHCBSSSSSSSCBCCC-------------
T ss_pred cHHHHHHhCCchhhcCCCCCCC--Cc--CHHHHHHHhcCCcchHHHHHHHHHcCCCCCCCCCCCCCC-------------
Confidence 5999997 78999999887642 22 24555421 1 1237889999999964 49987
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030717 142 ARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~ 159 (172)
.||++||++|++||.++
T Consensus 65 -~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 -AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp -CCCHHHHHHHHHHHHTC
T ss_pred -CCCHHHHHHHHHHHHhC
Confidence 39999999999999986
No 34
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=99.45 E-value=1.9e-13 Score=104.79 Aligned_cols=77 Identities=21% Similarity=0.409 Sum_probs=60.9
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC-----CCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN-----GVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCT 139 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-----~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~ 139 (172)
...++.+|++||..+|++|||.+|.+.. + |+|.+. ...+.+.|...|.+|. +.||+|.
T Consensus 44 ~~~~~~~G~~lf~~~Ca~CHg~~g~G~~-g-----P~L~~~~~~~~~~~~~~~l~~~i~~G~~~~Mp~~~---------- 107 (170)
T 2d0w_A 44 VAGCLPKGEEIYLESCSGCHGHIGEGKV-G-----PGLNDSYWTYPKNTTDKGLFETIFGGANGMMGPHG---------- 107 (170)
T ss_dssp CGGGHHHHHHHHHHHTHHHHCTTSCCSS-S-----CCSSSSCCSSGGGGSHHHHHHHHHHCCSTTCCCCT----------
T ss_pred CHHHHHHHHHHHHhhhHHhCCCCCCCCC-C-----CCCccchhhccccCCHHHHHHHHHcCCCCCCCCCC----------
Confidence 4567889999999999999998876432 2 333321 1236888999999997 5899997
Q ss_pred CCCCCCHHHHHHHHHHHHhhh
Q 030717 140 FGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 140 ~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..||++||++|++||+++.
T Consensus 108 --~~Ls~~ei~~l~aYl~sl~ 126 (170)
T 2d0w_A 108 --QDLELDNMLKLIAWIRHIQ 126 (170)
T ss_dssp --TTSCHHHHHHHHHHHHHTC
T ss_pred --CCCCHHHHHHHHHHHHHcc
Confidence 6899999999999999985
No 35
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=99.44 E-value=4.1e-14 Score=95.31 Aligned_cols=72 Identities=25% Similarity=0.390 Sum_probs=52.4
Q ss_pred hHHHHHHc-cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC---------CCCCCC---CCCCCCCCCC
Q 030717 72 KGVSLFRQ-ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK---------GRMPGF---GEKCTPRGQC 138 (172)
Q Consensus 72 ~G~~lf~~-~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~---------~~MP~~---~~~~~~~~~~ 138 (172)
+|++||.. +|++||+.++.+.. + .++.+......+.+.+..++...+ ..||+| .
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g~g--p--~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Mp~~~~~~--------- 68 (87)
T 2zxy_A 2 DGKAIFQQKGCGSCHQANVDTVG--P--SLKKIAQAYAGKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTML--------- 68 (87)
T ss_dssp CHHHHHHHTTGGGTCCSSSCSSS--C--CHHHHHHHTTTCHHHHHHHHTTCSCCSSCGGGHHHHGGGGGGG---------
T ss_pred ChHHHHhcCCchhhcCCCCCCCC--C--ChHHHHHHhcCCHHHHHHHHhcccccccCCCCCCCCCCccccc---------
Confidence 69999987 89999998876432 2 256665432225667776665432 259998 4
Q ss_pred CCCCCCCHHHHHHHHHHHHhh
Q 030717 139 TFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 139 ~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
..||++||++|++||.++
T Consensus 69 ---~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 ---KGLSDAELKALADFILSH 86 (87)
T ss_dssp ---GGCCHHHHHHHHHHHHTC
T ss_pred ---cCCCHHHHHHHHHHHHhc
Confidence 679999999999999986
No 36
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=99.44 E-value=9.9e-14 Score=102.28 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=60.9
Q ss_pred CchhhHHhHHHHHHc----cCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHHhCC-----CCCCCCCCCCCC
Q 030717 65 AQTVDIQKGVSLFRQ----ACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTYFGK-----GRMPGFGEKCTP 134 (172)
Q Consensus 65 a~~~d~~~G~~lf~~----~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g~-----~~MP~~~~~~~~ 134 (172)
...+++.+|++||.. +|++||+.++....+......|+|.+.+ .++.+.|...|.+++ ..||.|...-..
T Consensus 22 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp~~~~~~~~ 101 (138)
T 1h32_B 22 DAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGF 101 (138)
T ss_dssp SSCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHHSCHHHHHHHHHCHHHHSTTCSSCCTTCCSCC
T ss_pred hcCCCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhcccCCHHHHHHHHhCcccCCCCCccCcccccccc
Confidence 345789999999986 8999999776311111112246665432 347889999998874 479987410000
Q ss_pred -------CC---CCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 135 -------RG---QCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 135 -------~~---~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
+| +-.....||++|+++|++||.++.
T Consensus 102 ~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~ 137 (138)
T 1h32_B 102 NRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT 137 (138)
T ss_dssp SSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC
T ss_pred ccccccccCcccCcccccCCCHHHHHHHHHHHHhcC
Confidence 00 000123799999999999999864
No 37
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=99.43 E-value=1.3e-13 Score=92.03 Aligned_cols=70 Identities=19% Similarity=0.408 Sum_probs=50.6
Q ss_pred HHHHHH-ccCccccCCCCCCCCCCCCccchhhhc-CCCCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCCCCC
Q 030717 73 GVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQR-NGVDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 73 G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~-~~~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~~~L 144 (172)
|++||. .+|++||+.++.+. ++. +..+.. +...+.+.|.+.|++|.. .||+| ..|
T Consensus 1 ~~~l~~~~~C~~CHg~~g~~~--gP~--l~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-------------~~L 63 (79)
T 2d0s_A 1 DEALAKAKGCMACHAIDKKLV--GPS--YKDVAKKYTEADVPKLVEKVKKGGAGVWGPVPMPPH-------------PQV 63 (79)
T ss_dssp CHHHHHHTTGGGTCCSSSCSS--SCC--HHHHHHHCCGGGHHHHHHHHHHCBCSSSCSSCBCCC-------------TTS
T ss_pred CHhHHhcCCChhhcCCCCCCC--CCC--HHHHHHHHccccHHHHHHHHhcCCCCCCCCCCCCCC-------------CCC
Confidence 578885 78999999887642 222 333332 211146789999999854 39988 479
Q ss_pred CHHHHHHHHHHHHhh
Q 030717 145 QDEDIKLLAQFVKSQ 159 (172)
Q Consensus 145 sd~ei~~VaaYl~~~ 159 (172)
|++||++|++||.++
T Consensus 64 s~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 64 AEADIEKIVRWVLTL 78 (79)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999876
No 38
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=99.43 E-value=2.4e-13 Score=94.85 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=52.3
Q ss_pred hHHhHHHHHHccCccccCCCCCCC-CCCCCccc--hh-------------hhcC-CCCCHHHHHHHHHhCC-----CCCC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVI-QPGATLFL--KD-------------LQRN-GVDTEDEIYHVTYFGK-----GRMP 126 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~--p~-------------l~~~-~~~~~~~l~~~i~~g~-----~~MP 126 (172)
|+++|++||..+|++||+.++.+. ..++.+.. .. +... ..++.+.|...+.++. ..||
T Consensus 2 d~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp 81 (103)
T 1i54_A 2 DVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMI 81 (103)
T ss_dssp CHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSCC
T ss_pred cHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcCC
Confidence 678999999989999999876532 11222110 00 0000 1246888999888764 3688
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
|. ..+|++|+++|++||.++.
T Consensus 82 -~~------------~l~~~~ei~~l~aYl~sl~ 102 (103)
T 1i54_A 82 -FA------------GIKKKGERQDLVAYLKSAT 102 (103)
T ss_dssp -CC------------CCCCHHHHHHHHHHHHHHC
T ss_pred -cc------------CCCCHHHHHHHHHHHHHhc
Confidence 63 3335999999999999874
No 39
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=99.43 E-value=2.2e-13 Score=96.15 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=53.5
Q ss_pred hHHhHHHHHHccCccccCCCCCCC-CCCCCccchhhhcC------------------CCCCHHHHHHHHHhCC-----CC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVI-QPGATLFLKDLQRN------------------GVDTEDEIYHVTYFGK-----GR 124 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~-~~~~~~~~p~l~~~------------------~~~~~~~l~~~i~~g~-----~~ 124 (172)
|+++|++||.. |++||+.++.+. ..++.+ ..+.+. ..++.+.|...+.+++ ..
T Consensus 2 d~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L--~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~ 78 (107)
T 1co6_A 2 DAASGEQVFKQ-CLVCHSIGPGAKNKVGPVL--NGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTK 78 (107)
T ss_dssp CHHHHHHHHHH-HHTTCCCSTTCCCCSSCCC--TTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred CHHHHHHHHHH-hHhhCCCCCCCCCCCCCCc--ccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCC
Confidence 67899999988 999999776421 112221 111110 1247888888887653 37
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717 125 MPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 125 MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
|| |. ..+|++|+++|++||.++..+
T Consensus 79 Mp-~~------------~l~s~~ei~~l~aYl~sl~~~ 103 (107)
T 1co6_A 79 MI-FA------------GVKDEQKVSDLIAYIKQFNAD 103 (107)
T ss_dssp CC-CC------------CCCCHHHHHHHHHHHHTBCTT
T ss_pred CC-CC------------CCCCHHHHHHHHHHHHHcccC
Confidence 99 74 556899999999999998644
No 40
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=99.41 E-value=3.1e-13 Score=94.98 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=50.9
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC-CCCHHHHHHHHH-----------------h--CCCCCCCC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG-VDTEDEIYHVTY-----------------F--GKGRMPGF 128 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~-~~~~~~l~~~i~-----------------~--g~~~MP~~ 128 (172)
++++|++||+.+|++||+.++.+.+ .....|+|.+.. ..+.++|...+. . +...||+|
T Consensus 2 d~~~G~~lf~~~C~~CH~~~g~~~g--~~~~gP~L~~~~~~~~~~~l~~~i~~p~~~~~g~~~~~~~~~~g~~~~~Mp~~ 79 (110)
T 2l4d_A 2 SFTSGEQIFRTRCSSCHTVGNTEPG--QPGIGPDLLGVTRQRDANWLVRWLKVPDQMLAEKDPLAMLLFEQYNRLAMPNM 79 (110)
T ss_dssp ---CHHHHHHHHTTTTCCSSCSBTT--BCTTSCCCTTGGGTSCTTHHHHHTTSHHHHHHTTCHHHHHHHHHHTSCCCCCC
T ss_pred CHHHHHHHHHHhhHHhcCCCCCCCC--CCCCCCChhhhhcccCHHHHHHHHhChhhhccCcchHHHHHHhccCcCcCCCC
Confidence 5788999999999999998765211 111234443321 112333333221 1 13589998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIE 168 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~ 168 (172)
. ||++|+++|++||.++.......+.
T Consensus 80 ~--------------Ls~~ei~~l~~yl~~~~~~~~~~~~ 105 (110)
T 2l4d_A 80 R--------------LGDAEVSALISYLEEETARLQTPVT 105 (110)
T ss_dssp C--------------CCHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred C--------------CCHHHHHHHHHHHHHcccccCcccc
Confidence 3 9999999999999998755444443
No 41
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=99.40 E-value=6e-13 Score=95.78 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=56.5
Q ss_pred cCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-----------------CCCC
Q 030717 64 LAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-----------------GRMP 126 (172)
Q Consensus 64 ~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-----------------~~MP 126 (172)
....+++++|+.||..+|++||+.++.+. ++. +..+.. ..+.+.|...|.+|. ..||
T Consensus 28 ~~~~~~~~~G~~l~~~~C~~CH~~~g~~~--gP~--l~~~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~Mp 101 (124)
T 3cp5_A 28 QIDAALAQQGEQLFNTYCTACHRLDERFI--GPA--LRDVTK--RRGPVYIMNVMLNPNGMIQRHPVMKQLVQEYGTMMT 101 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTTTTCCSSSCSS--SCC--CTTHHH--HSCHHHHHHHHHCHHHHHHHCHHHHHHHHHHCSCCC
T ss_pred cCChHHHHHHHHHHHHhhHHhCCCCCCCC--CCC--cccccc--ccCHHHHHHHHhChHhhcccchhHHHHHhcCCCCCC
Confidence 34567889999999999999999875422 222 233322 125777888777664 4799
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 127 GFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
.+ .||++|+++|++||.++..
T Consensus 102 ~~--------------~Ls~~ei~~l~~Yl~~l~~ 122 (124)
T 3cp5_A 102 DM--------------ALSEEQARAILEYLRQVAE 122 (124)
T ss_dssp CC--------------CCCHHHHHHHHHHHHHHHH
T ss_pred CC--------------CCCHHHHHHHHHHHHHhCC
Confidence 65 5999999999999999864
No 42
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=99.39 E-value=1.5e-13 Score=92.20 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=51.9
Q ss_pred HHHHHH-ccCccccCCCCCCCCCCCCccchhhhcC-CC--CCHHHHHHHHHhCC------CCCCCCCCCCCCCCCCCCCC
Q 030717 73 GVSLFR-QACIGCHDGGGNVIQPGATLFLKDLQRN-GV--DTEDEIYHVTYFGK------GRMPGFGEKCTPRGQCTFGA 142 (172)
Q Consensus 73 G~~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~~-~~--~~~~~l~~~i~~g~------~~MP~~~~~~~~~~~~~~~~ 142 (172)
|++||. .+|++||+.++.+. ++ .++.+... .. .+.+.|.+.|++|. ..||+| .
T Consensus 1 ~~~l~~~~~C~~CHg~~g~~~--gp--~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-------------~ 63 (81)
T 1a56_A 1 DADLAKKNNCIACHQVETKVV--GP--ALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPN-------------V 63 (81)
T ss_dssp CHHHHHHHSHHHHBCSSCBSS--SC--CHHHHHHHHTTSSSHHHHHHHHHHHCBSSSSSSCCBCSC-------------C
T ss_pred CHhHHhccCchhhCCCCCCcC--Cc--CHHHHHHHhcCCccHHHHHHHHHHcCCCCCCCCCCCCCC-------------C
Confidence 578886 79999999887642 22 24555421 11 12788999999985 369998 4
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 030717 143 RLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~~~ 160 (172)
.||++|+++|++||.+++
T Consensus 64 ~Ls~~ei~~l~~yl~~lk 81 (81)
T 1a56_A 64 NVSDADAKALADWILTLK 81 (81)
T ss_dssp SSSSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 699999999999999863
No 43
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=99.38 E-value=5.6e-13 Score=98.62 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=58.7
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCcc--chhhhcC--CCCCHHHHHHHHHhCCCC-----C----CCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLF--LKDLQRN--GVDTEDEIYHVTYFGKGR-----M----PGFGEKC 132 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~--~p~l~~~--~~~~~~~l~~~i~~g~~~-----M----P~~~~~~ 132 (172)
..+++++|++||..+|++||+ ++. ...++.+. .+.+... ..++.+.|...++++... | |...+
T Consensus 22 ~~~d~~~G~~lf~~~Ca~CH~-~g~-~~~gP~L~lg~~~~~~s~~~~~~~~~L~~~l~~p~~~~~~~~~~~~~p~~~~-- 97 (135)
T 1e29_A 22 TARQFTNGQKIFVDTCTQCHL-QGK-TKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYDGEDDYSELHPNISR-- 97 (135)
T ss_dssp CHHHHHHHHHHHHHHTHHHHG-GGC-BSSSSSCSSSHHHHHTSSSCCSSHHHHHHHHHSCBCTTSCSBCTTTSCCTTC--
T ss_pred CcccHHHHHHHHHhHHHHhcC-CCC-CCCCCCceeccccccccccccCCHHHHHHHHhChhhccCccccccccccccc--
Confidence 456889999999989999998 322 12222221 1333321 127899999999876431 1 11110
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhhh--CCCC
Q 030717 133 TPRGQCTFGARLQDEDIKLLAQFVKSQAD--QGWP 165 (172)
Q Consensus 133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~--~gw~ 165 (172)
...+-.+ ..||++|+++|++||.+++. ++|.
T Consensus 98 -~~~mp~~-~~Lsd~ei~~laaYl~~~~~~~~~w~ 130 (135)
T 1e29_A 98 -PDIYPEM-RNYTEDDIFDVAGYTLIAPKLDERWG 130 (135)
T ss_dssp -TTTCGGG-TTCCHHHHHHHHHHHHHHHHHCTTSC
T ss_pred -hhccccc-ccCCHHHHHHHHHHHHhccCcCCCCC
Confidence 0000000 36999999999999999874 7887
No 44
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=99.38 E-value=4e-13 Score=89.79 Aligned_cols=70 Identities=27% Similarity=0.504 Sum_probs=51.0
Q ss_pred hHHHHHHc-cCccccCCCCCCCCCCCCccchhhhcC-C--CCCHHHHHHHHHhCCC------CCCCCCCCCCCCCCCCCC
Q 030717 72 KGVSLFRQ-ACIGCHDGGGNVIQPGATLFLKDLQRN-G--VDTEDEIYHVTYFGKG------RMPGFGEKCTPRGQCTFG 141 (172)
Q Consensus 72 ~G~~lf~~-~C~~CHg~~g~~~~~~~~~~~p~l~~~-~--~~~~~~l~~~i~~g~~------~MP~~~~~~~~~~~~~~~ 141 (172)
+|++||+. +|++||+.++.+. ++. +..+... . ..+.+.|...|.+|.. .||+|
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g~--gP~--l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~------------- 64 (82)
T 1cch_A 2 DGEALFKSKPCAACHSVDTKMV--GPA--LKEVAAKNAGVEGAADTLALHIKNGSQGVWGPIPMPPN------------- 64 (82)
T ss_dssp CSHHHHHHSTHHHHSCSSSCSS--SCC--HHHHHHHSSSCGGGHHHHHHHHHTCCCSSSSSCCCCCC-------------
T ss_pred cHHHHHHhCCChhhcCCCCCCC--CcC--hHHHHHHcCCCchHHHHHHHHhhcCCCCCCCCCCCCCC-------------
Confidence 58999985 8999999887642 222 3333321 1 1126789999999853 48887
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030717 142 ARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~ 159 (172)
.||++|+++|++||.++
T Consensus 65 -~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 -PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp -SCCHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 39999999999999986
No 45
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=99.38 E-value=5.2e-13 Score=95.05 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=51.4
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------------------------CCCCHHHHHHHHHhCC-
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------------------------GVDTEDEIYHVTYFGK- 122 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------------------------~~~~~~~l~~~i~~g~- 122 (172)
+|+++|++||+ +|++||+.++.+... ..|.|.+. ..++.+.|...|.+++
T Consensus 2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~----~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~ 76 (112)
T 3c2c_A 2 GDAAAGEKVSK-KCLACHTFDQGGANK----VGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKA 76 (112)
T ss_dssp CCHHHHHHHGG-GGTTTCCCSTTCCCS----SSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHH
T ss_pred ccHHHHHHHHH-hHHhhCCCCCCCCCC----CCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhh
Confidence 46889999997 999999987543211 12333321 1257888888887653
Q ss_pred ------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 123 ------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 123 ------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
..|| | ..++++||++|++||+++
T Consensus 77 ~~~g~~~~~~~~~~Mp-~-------------~l~~~~di~~l~aYl~sl 111 (112)
T 3c2c_A 77 FVLEKSGDPKAKSKMT-F-------------KLTKDDEIENVIAYLKTL 111 (112)
T ss_dssp HHHHHHCCTTCCCSCC-C-------------CCCCHHHHHHHHHHHTTC
T ss_pred hcCCCcCCccccCCCC-C-------------cCCCHHHHHHHHHHHHHc
Confidence 5798 8 434589999999999876
No 46
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=99.37 E-value=1.6e-13 Score=100.57 Aligned_cols=73 Identities=25% Similarity=0.501 Sum_probs=56.3
Q ss_pred hHHHHHHccCccccCCCCCCCCCCCCccchhhhcC------CCCCHHHHHHHHHhCC------------CCCCCCCCCCC
Q 030717 72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRN------GVDTEDEIYHVTYFGK------------GRMPGFGEKCT 133 (172)
Q Consensus 72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~------~~~~~~~l~~~i~~g~------------~~MP~~~~~~~ 133 (172)
+|++||.. |++|||.+|.+..+ ..|.|.+. ...+.+.|.+.|.+|. ..||+|.
T Consensus 3 ~G~~ly~~-Ca~CHg~~g~G~~~----~~P~L~~~~~~~~~~~~~~~~l~~~i~~g~~g~~~~~g~~~~~~MP~~~---- 73 (131)
T 1c52_A 3 DGAKIYAQ-CAGCHQQNGQGIPG----AFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFA---- 73 (131)
T ss_dssp CHHHHTHH-HHHHHCTTSCCBTT----TBCCCTTHHHHHHTSTTHHHHHHHHHHHCEEEEEEETTEEEEEEECCCT----
T ss_pred cHHHHHHH-HHHhcCCCCCCCCC----CCCCCCCCccccccccCCHHHHHHHHHhcccccccccCCccCCCCCCcc----
Confidence 69999988 99999988775432 24555432 1236788999999884 3699993
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717 134 PRGQCTFGARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
.||++||++|++||.++..+
T Consensus 74 ---------~Lsd~ei~~l~~Yl~~~~~~ 93 (131)
T 1c52_A 74 ---------QLKDEEIAAVLNHIATAWGD 93 (131)
T ss_dssp ---------TSCHHHHHHHHHHHHHTTST
T ss_pred ---------cCCHHHHHHHHHHHHHHcCC
Confidence 79999999999999998654
No 47
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.37 E-value=1.6e-12 Score=90.56 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=52.1
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCcc--chhh-----hcC----------CCCCHHHHHHHHHhCC-----CCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLF--LKDL-----QRN----------GVDTEDEIYHVTYFGK-----GRM 125 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~--~p~l-----~~~----------~~~~~~~l~~~i~~g~-----~~M 125 (172)
+|+++|++||+ +|++||+.++.+. ++.+. .... .++ ..++.+.|...+.+++ ..|
T Consensus 2 gd~~~G~~l~~-~C~~CH~~~~~~~--gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M 78 (100)
T 1qn2_A 2 GDAAAGEKAFA-PCKACHNFEKNGV--GPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTKM 78 (100)
T ss_dssp CCHHHHHHHTG-GGGGTCCSSSCSS--SCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred ccHHHHHHHHH-HHHHhcCCCCCCC--CCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCCC
Confidence 46889999996 5999999874322 22211 0000 010 1357889999888753 379
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 126 PGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 126 P~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
| |. ..+|++|+++|++||.++
T Consensus 79 p-~~------------~~~s~~di~~l~aYl~sl 99 (100)
T 1qn2_A 79 V-FP------------GISDPKKVDDIIAYLKTK 99 (100)
T ss_dssp C-CC------------CCCCHHHHHHHHHHHHHC
T ss_pred C-CC------------CCCCHHHHHHHHHHHHhc
Confidence 8 75 667999999999999986
No 48
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=99.37 E-value=4.4e-13 Score=99.36 Aligned_cols=76 Identities=21% Similarity=0.117 Sum_probs=51.2
Q ss_pred hhHHhHHHHHHccCccccCCCCC-CCCC-CCCccchhhhcC------------------------CCCCHHHHHHHHHhC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGN-VIQP-GATLFLKDLQRN------------------------GVDTEDEIYHVTYFG 121 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~-~~~~-~~~~~~p~l~~~------------------------~~~~~~~l~~~i~~g 121 (172)
+++++|+++|+ +|++||+.++. +... +.....|+|.+. ..|+.+.|...+.++
T Consensus 22 ~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p 100 (137)
T 1c2n_A 22 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 100 (137)
T ss_dssp CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTST
T ss_pred cChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCH
Confidence 68899999998 99999997632 1100 000112333210 136788888887776
Q ss_pred C-------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 122 K-------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 122 ~-------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
+ ..|| | . ||++|+ +|++||.++.
T Consensus 101 ~~~~~g~~~~~~~~~~Mp-~-------------~-Lsd~e~-~liaYL~sl~ 136 (137)
T 1c2n_A 101 GAFLKEKLDDKKAKTGMA-F-------------K-LAKGGE-DVAAYLASVV 136 (137)
T ss_dssp THHHHHHHTCSCCCCSCC-C-------------C-CSSSHH-HHHHHHHHHC
T ss_pred HhhCCCcccccCcCCCCC-C-------------C-CCcHHH-HHHHHHHHcc
Confidence 4 4677 5 5 999999 9999999874
No 49
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.37 E-value=1.1e-12 Score=109.44 Aligned_cols=80 Identities=26% Similarity=0.498 Sum_probs=63.1
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc-----CCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR-----NGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTF 140 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~-----~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~ 140 (172)
..++++|+++|..+|++|||.+|.+.... ..|+|.+ ++ .+.+.|.+.+.+|+ +.||+|.
T Consensus 219 ~~~~~~G~~lf~~~Ca~CHg~~g~G~~~~---~~P~L~~~~~~~~~-~~~~~l~~~i~~g~~g~MP~~~----------- 283 (311)
T 3mk7_C 219 DADLSAGKNVYAQTCAVCHGQGGEGMAAL---GAPKLNSAAGWIYG-SSLGQLQQTIRHGRNGQMPAQQ----------- 283 (311)
T ss_dssp CCCHHHHHHHHHHTTHHHHCTTSCCBTTT---TBCCSSCGGGCSSC-CSHHHHHHHHHHCBCCEECCCT-----------
T ss_pred cccchhhHHHHhhhHHhcCCCCCCCCccc---CCCCCCcchhhhcc-CCHHHHHHHHHhCccccCcccc-----------
Confidence 36789999999999999999887754321 1355544 22 46899999999997 4799997
Q ss_pred CCCCCHHHHHHHHHHHHhhhhC
Q 030717 141 GARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 141 ~~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+++|++||.++..+
T Consensus 284 -~~Ls~~ei~~laaYl~sl~~~ 304 (311)
T 3mk7_C 284 -QYLGDDKVHLLAAYVYSLSQK 304 (311)
T ss_dssp -TTTHHHHHHHHHHHHHHHCC-
T ss_pred -cCCCHHHHHHHHHHHHHcCCC
Confidence 789999999999999998643
No 50
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.35 E-value=9.9e-14 Score=106.60 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=68.3
Q ss_pred cchhhhHHHHHHHhHHHHhhhhcccccCchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHH
Q 030717 38 LELQKYDTYNVLCLPVSLGFFHAAVSLAQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHV 117 (172)
Q Consensus 38 ~~~~~mr~l~~l~~~l~~~~~~~a~~~a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~ 117 (172)
++.++|+-+...+.. ..............+..|+.+|..+|++|||.+|.+..... .+|.|.+. ....+...
T Consensus 61 Ls~~di~~la~Y~~s---~~~~~~~~~~~~~~~~~g~~~~~~~Ca~CHg~~G~G~~~~~--~~P~L~gq---~~~yl~~~ 132 (174)
T 3vrd_A 61 YSTADFQKMAEYFKQ---QTYQPVKQSFDKALVAKGTKLHDKYCEKCHVESGKPLADQD--EYHILAGQ---WTPYLRYA 132 (174)
T ss_dssp SCHHHHHHHHHHHHH---SCCCCCCCCCCGGGHHHHHHHHHHHTTTTSGGGGCCCTTCS--SCCCCTTS---CHHHHHHH
T ss_pred CCHHHHHHHHhhhhc---ccccccccccchhhhccchhhhcchhHhhcCcCCCCCCCCC--CCCccCCC---CHHHHHHH
Confidence 455666655443322 21112233445567889999999999999998877542221 26777655 45555554
Q ss_pred H---HhCCC--------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 118 T---YFGKG--------RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 118 i---~~g~~--------~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
+ ++|.+ .||.|. ..|||+||++|++||.+++
T Consensus 133 L~~~~~g~r~~~~~~~~~M~~~a------------~~Lsd~eI~alaaY~~S~k 174 (174)
T 3vrd_A 133 IEDFRAERRPMEKKMASKLKELL------------KAEGEDGLDALFAFYASQQ 174 (174)
T ss_dssp HHHHHTTSSCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcCCCCccchhhHHHH------------hhCCHHHHHHHHHHHHHcC
Confidence 4 45532 589987 7899999999999999873
No 51
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=99.30 E-value=2e-12 Score=93.01 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=50.4
Q ss_pred hhHHhHHHHHHccCccccCCCCCC-CCCCCCccchhhhcC------------------------CCCCHHHHHHHHHhC-
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNV-IQPGATLFLKDLQRN------------------------GVDTEDEIYHVTYFG- 121 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~-~~~~~~~~~p~l~~~------------------------~~~~~~~l~~~i~~g- 121 (172)
+|+++|++|| ++|++||+.++.+ ...+ |+|.+. ..++.+.|...|.++
T Consensus 3 gd~~~G~~lf-~~C~~CH~~~~~~~~~~g-----P~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~ 76 (121)
T 1jdl_A 3 GDPAKGEAVF-KKCMACHRVGPDAKNLVG-----PALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPN 76 (121)
T ss_dssp CCHHHHHHHG-GGTTTTCCCSTTCCCSSS-----CCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHH-hhhhhhCCCCCCCCCCCC-----CCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcc
Confidence 5788999999 7999999976432 1122 233221 125677787776543
Q ss_pred ------------------CCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhhhh
Q 030717 122 ------------------KGRMPGFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQAD 161 (172)
Q Consensus 122 ------------------~~~MP~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~~~ 161 (172)
...|| | . |++ +|+++|++||.++..
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~~Mp-~-------------~-l~~~~ei~~l~aYL~sl~~ 120 (121)
T 1jdl_A 77 AFLRKFLADAGHAEQAKGSTKMV-F-------------K-LPDEQERKDVVAYLKQFSP 120 (121)
T ss_dssp HHHHHHHHHTTCGGGGSSCCSCC-C-------------C-CCCHHHHHHHHHHHGGGCC
T ss_pred cccCCcccccchhhcccccccCC-c-------------c-CCCHHHHHHHHHHHHHccc
Confidence 25787 6 5 666 999999999998853
No 52
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=99.28 E-value=1.9e-12 Score=86.61 Aligned_cols=67 Identities=27% Similarity=0.438 Sum_probs=48.0
Q ss_pred HHHH-ccCccccCCCCCCCCCCCCccchhhhc-CC--CCCHHHHHHHHHhCCCC------CCCCCCCCCCCCCCCCCCCC
Q 030717 75 SLFR-QACIGCHDGGGNVIQPGATLFLKDLQR-NG--VDTEDEIYHVTYFGKGR------MPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 75 ~lf~-~~C~~CHg~~g~~~~~~~~~~~p~l~~-~~--~~~~~~l~~~i~~g~~~------MP~~~~~~~~~~~~~~~~~L 144 (172)
+||. .+|++||+.+|.+. ++. ++.+.+ +. .++.+.|...+++|... ||+| .|
T Consensus 3 ~l~~~~~C~~CHg~~g~g~--gP~--l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~--------------~L 64 (80)
T 1ayg_A 3 QLAKQKGCMACHDLKAKKV--GPA--YADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMPPQ--------------NV 64 (80)
T ss_dssp TTTTSSSSGGGCCSSCCSS--SCC--HHHHHHHCSSCTTHHHHHHHHHHSCBCSSSCSCCBCCC--------------CC
T ss_pred hhHhhCCchhhcCCCCCCC--CCC--hHHHHHHhcCCccHHHHHHHHHHcCCCCCCCCCCCCCC--------------CC
Confidence 4674 58999999887642 222 344432 21 23468899999998652 8887 39
Q ss_pred CHHHHHHHHHHHHhh
Q 030717 145 QDEDIKLLAQFVKSQ 159 (172)
Q Consensus 145 sd~ei~~VaaYl~~~ 159 (172)
||+||++|++||.++
T Consensus 65 sd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 65 TDAEAKQLAQWILSI 79 (80)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999986
No 53
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=1.2e-12 Score=118.77 Aligned_cols=85 Identities=21% Similarity=0.388 Sum_probs=68.1
Q ss_pred CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCC
Q 030717 65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG---RMPGFGEKCTPRGQCTFG 141 (172)
Q Consensus 65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~---~MP~~~~~~~~~~~~~~~ 141 (172)
...+++++|++||+.+|++||+.++.+.. ...|+|.+....+.+.|.+.|++|.. .||+|.
T Consensus 588 ~~~~~~~~G~~l~~~~C~~CHg~~g~g~~----~~~P~L~~~~~~~~~~l~~~i~~g~~~~~~Mp~~~------------ 651 (677)
T 1kb0_A 588 YDPAKVEAGTMLYVANCVFCHGVPGVDRG----GNIPNLGYMDASYIENLPNFVFKGPAMVRGMPDFT------------ 651 (677)
T ss_dssp CCGGGHHHHHHHHHHHTHHHHCSTTTSCC----SSSCCGGGSCHHHHHTHHHHHSSCTTGGGTCCCCT------------
T ss_pred CChhhHHHHHHHHhhhhhhhCCCCCcCCC----CCCCCccccCcccHHHHHHHHHcCCCCCCCCCccc------------
Confidence 34567899999999999999998876432 22577766544467789999999965 799996
Q ss_pred CCCCHHHHHHHHHHHHhhhhCCCC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQGWP 165 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~gw~ 165 (172)
..||++||++|++||++++.+.|+
T Consensus 652 ~~ls~~ei~~l~~Yl~~l~~~~~~ 675 (677)
T 1kb0_A 652 GKLSGDDVESLKAFIQGTADAIRP 675 (677)
T ss_dssp TTSCTTHHHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHhccccCCC
Confidence 679999999999999999876664
No 54
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=99.28 E-value=6.4e-12 Score=99.68 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=59.0
Q ss_pred cCchhhHHhHHHHHHc----------------cCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHH---HHHHhC
Q 030717 64 LAQTVDIQKGVSLFRQ----------------ACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIY---HVTYFG 121 (172)
Q Consensus 64 ~a~~~d~~~G~~lf~~----------------~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~---~~i~~g 121 (172)
....+|.++|++||.. +|++||+.+|.+...+. ..|+|.+.. .++.+.|. ..|.++
T Consensus 92 g~~~gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~--~GP~Lag~~~~r~~~~~~L~~~~~~I~~~ 169 (208)
T 3oa8_B 92 GPVLGSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGT--LGPSLVGYGRERNFSAEDAKIAFAKVYDA 169 (208)
T ss_dssp SCSCCCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCS--SSCCCTTHHHHTTTCHHHHHHHHHHHHCG
T ss_pred CcCccCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCC--cCCCcccccccccCCHHHHHHHHHHhhCc
Confidence 3445789999999975 89999998877532221 135555432 24666655 445543
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 122 -----KGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 122 -----~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
...||+|+. ...|||+||++|++||.++..
T Consensus 170 ~~~~p~~~MP~fa~----------~g~LSdeEIaaLaaYL~s~~s 204 (208)
T 3oa8_B 170 QASLACSSMPRFGV----------NGVLTEQQIKDVVAYLFDPES 204 (208)
T ss_dssp GGTSTTCSSCCTTT----------TTSSCHHHHHHHHHHHHCTTS
T ss_pred cCCCCCCCCCcccc----------cCCCCHHHHHHHHHHHHccCC
Confidence 348999961 025999999999999998753
No 55
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.25 E-value=1.3e-12 Score=100.24 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=54.7
Q ss_pred chhhHHhHHHHHHc--------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC-------CCCC
Q 030717 66 QTVDIQKGVSLFRQ--------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG-------RMPG 127 (172)
Q Consensus 66 ~~~d~~~G~~lf~~--------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~-------~MP~ 127 (172)
...++++|++||.. +|++||+.+|.+... ...|.|.+. ....+.. .+.+|.. .||.
T Consensus 96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~---~~~P~L~g~---~~~~~~~~l~~~~~g~~~~~~~~~~Mp~ 169 (190)
T 1m70_A 96 DPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDL---AGFPKLGGQ---HAAYTAKQLTDFREGNRTNDGDTMIMRG 169 (190)
T ss_dssp CHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGG---GTBCCCTTC---CHHHHHHHHHHHHHTSCCTTTTTCHHHH
T ss_pred cccchhhHHHHHhCCCcccCCcchhhcCCCCCCCCCC---CCCCCcCCC---CHHHHHHHHHHHHhCCCCCCCccccHHH
Confidence 45678899999988 899999988764322 125667654 3333333 3345532 6999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 128 FGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
|. ..||++||++|++||+++
T Consensus 170 ~~------------~~Ls~~ei~~l~~Yl~sl 189 (190)
T 1m70_A 170 VA------------AKLSNKDIEALSSYIQGL 189 (190)
T ss_dssp HH------------TTCCHHHHHHHHHHHHTC
T ss_pred HH------------HhCCHHHHHHHHHHHHhC
Confidence 86 689999999999999986
No 56
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=1.6e-12 Score=118.31 Aligned_cols=82 Identities=21% Similarity=0.373 Sum_probs=65.7
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC--CCCCCCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK--GRMPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~--~~MP~~~~~~~~~~~~~~~~~L 144 (172)
.+++++|++||+.+|++|||.++.+ . ...|+|.+....+.+.+.+.+++|. ..||+|. ..|
T Consensus 592 ~~~~~~G~~ly~~~Ca~CHg~~g~g-~----~~~P~L~~~~~~~~~~~~~~i~~G~~~~~Mp~~~------------~~l 654 (689)
T 1yiq_A 592 TASIEAGAKLYDGYCSQCHGIHAVS-G----GVLPDLRKLTPEKHQMFLGILFGGRVPDGMPSFA------------DAF 654 (689)
T ss_dssp HHHHHHHHHHHHHHTHHHHCGGGCC-C----SSSCCTTSCCHHHHHTHHHHHTTTTGGGTCCCCT------------TTC
T ss_pred HHHHHHHHHHHhhhhhhhCCCCCcC-C----CCCCCcccCCcCCHHHHHHHHHcCCCCCCCCccc------------cCC
Confidence 4568899999999999999987764 1 1256665543346778899999998 4899997 679
Q ss_pred CHHHHHHHHHHHHhhhhCCCC
Q 030717 145 QDEDIKLLAQFVKSQADQGWP 165 (172)
Q Consensus 145 sd~ei~~VaaYl~~~~~~gw~ 165 (172)
|++||++|++||+++..+.|.
T Consensus 655 s~~ei~~l~~Yl~~~~~~~~~ 675 (689)
T 1yiq_A 655 TPEQVDQIHQYLIKRAHDLHQ 675 (689)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccccccc
Confidence 999999999999999866654
No 57
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=2e-12 Score=117.23 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=66.0
Q ss_pred CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCC---CCCCCCCCCCCCCCCCCC
Q 030717 65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKG---RMPGFGEKCTPRGQCTFG 141 (172)
Q Consensus 65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~---~MP~~~~~~~~~~~~~~~ 141 (172)
....++++|++||+.+|++|||.++.+ .. ..|+|.+....+.+.+.+.+++|.. .||+|.
T Consensus 575 ~~~~~~~~G~~l~~~~Ca~CHg~~g~g-~~----~~P~L~~~~~~~~~~~~~~i~~G~~~~~~Mp~~~------------ 637 (668)
T 1kv9_A 575 AAPEQVQAGKQLYGQFCSVCHGMGTIS-GG----LIPDLRQSSDATREHFQQIVLQGALKPLGMPSFD------------ 637 (668)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHCGGGCC-CS----SSCCGGGCCHHHHHTHHHHHHHCTTGGGTCCCCT------------
T ss_pred CCHHHHHHHHHHHhhhhHhhCcCCCcC-CC----CCCCCcCCCCCCHHHHHHHHHhCCCCCCCCCccc------------
Confidence 345678899999999999999988764 21 2567765433457778889999963 799997
Q ss_pred CCCCHHHHHHHHHHHHhhhhCCCC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQGWP 165 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~gw~ 165 (172)
..||++||++|++||+++..++|+
T Consensus 638 ~~ls~~ei~~l~~yl~~~~~~~~~ 661 (668)
T 1kv9_A 638 DSLKPEEVEQIKLYVMSREYEDYM 661 (668)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhccCCCcc
Confidence 789999999999999998765543
No 58
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.24 E-value=3.5e-12 Score=97.29 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=55.4
Q ss_pred chhhHHhHHHHHHc--------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHH---HhCC---CCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQ--------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVT---YFGK---GRMPGFGEK 131 (172)
Q Consensus 66 ~~~d~~~G~~lf~~--------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i---~~g~---~~MP~~~~~ 131 (172)
...++++|++||.. +|++||+.++.+ . ...|.|.+. ....+...+ .+|. ..||+|.
T Consensus 96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~----~~~P~L~~~---~~~~~~~~l~~~~~g~~~~~~Mp~~~-- 165 (183)
T 1h1o_A 96 KHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQG-A----GPFPRLAGQ---RYGYIIQQLTYFHNGTRVNTLMNQIA-- 165 (183)
T ss_dssp CCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-B----TTBCCCTTC---CHHHHHHHHHHHHHTSSCCHHHHHHH--
T ss_pred chhhHHhHHHHHHcCCcccCCCcchhhCCCCCCC-C----CCCCCCCCC---CHHHHHHHHHHHHcCCCCCcchHHHH--
Confidence 34668899999987 999999988764 2 126777654 455555544 3443 2599997
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 132 CTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
..||++||++|++||.++
T Consensus 166 ----------~~Ls~~ei~~l~~yl~sl 183 (183)
T 1h1o_A 166 ----------KNITVAQMKDVAAYLSSL 183 (183)
T ss_dssp ----------TTCCHHHHHHHHHHHHHC
T ss_pred ----------HhCCHHHHHHHHHHHHhC
Confidence 689999999999999874
No 59
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=99.24 E-value=9.9e-12 Score=92.22 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=60.8
Q ss_pred hhhHHhHHHHHHccCccccCCCCC-CCCCCCCccchhhhcC--------------------------CCCCHHHHHHHHH
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGN-VIQPGATLFLKDLQRN--------------------------GVDTEDEIYHVTY 119 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~-~~~~~~~~~~p~l~~~--------------------------~~~~~~~l~~~i~ 119 (172)
++|+++|++||.+ |++||+.++. +...+.....|+|.+. ..|+.+.|...|.
T Consensus 3 ~gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~ 81 (135)
T 155c_A 3 EGDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVT 81 (135)
T ss_dssp CCCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHH
T ss_pred ccCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHh
Confidence 3578899999976 9999986643 1100111123444432 1367889999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCCCCcCC
Q 030717 120 FGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGWPKIES 169 (172)
Q Consensus 120 ~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw~~~~~ 169 (172)
+++..+|.+-..-..+..-.| . |+++|+ +|++||.++..++++.-.+
T Consensus 82 ~P~~~~pg~~~~~~~~t~Mpf-~-L~~~e~-dliAYL~sl~~~~~~~~~~ 128 (135)
T 155c_A 82 DPKPLVKKMTDDKGAKTKMTF-K-MGKNQA-DVVAFLAQDDPDAXXXXXX 128 (135)
T ss_dssp SSTTTTTTTSCCSCCCCSCCC-C-CCSCHH-HHHHHHHHHSCCSCSSCSC
T ss_pred CHHhhCCCccccccccCCCCC-C-CCCHHH-HHHHHHHhcCCCCCccccc
Confidence 987666663100000000001 3 888888 9999999998887765443
No 60
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=99.22 E-value=1.2e-11 Score=88.55 Aligned_cols=71 Identities=25% Similarity=0.477 Sum_probs=48.1
Q ss_pred hHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc--------------------CC-CCCHHHHHHHHHhCC-----
Q 030717 69 DIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR--------------------NG-VDTEDEIYHVTYFGK----- 122 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~--------------------~~-~~~~~~l~~~i~~g~----- 122 (172)
|+++|++||+ +|++||+.++... |+.+ ..+.+ .+ .|+.+.|.+.+.+++
T Consensus 2 d~~~G~~lf~-~C~~CH~~~~~~~--GP~l--~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g 76 (114)
T 1i8o_A 2 DAKAGEAVFK-QCMTCHRADKNMV--GPAL--AGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK 76 (114)
T ss_dssp CHHHHHHHHH-HHTTTCCSSSCSS--SCCC--TTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred cHHHHHHHHH-hHHhhCCCcccCc--Cccc--ccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence 6789999995 9999998433322 2221 11111 11 456888888775542
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhh
Q 030717 123 --------------GRMPGFGEKCTPRGQCTFGARLQD-EDIKLLAQFVKSQ 159 (172)
Q Consensus 123 --------------~~MP~~~~~~~~~~~~~~~~~Lsd-~ei~~VaaYl~~~ 159 (172)
..|| | . |++ +|+++|++||.++
T Consensus 77 ~~~d~~~~~~~~~~~~Mp-~-------------~-l~~~~d~~~liaYL~sl 113 (114)
T 1i8o_A 77 FLTEKGKADQAVGVTKMT-F-------------K-LANEQQRKDVVAYLATL 113 (114)
T ss_dssp HHHHTTCGGGCCSCCSSC-C-------------C-CCCHHHHHHHHHHHHTT
T ss_pred CcccccccccccccCcCC-C-------------C-CCCHHHHHHHHHHHHhc
Confidence 5788 6 5 887 9999999999986
No 61
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.19 E-value=2.2e-11 Score=105.43 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=60.3
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC--CCCHHHHHHHHHhCC------------CCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG--VDTEDEIYHVTYFGK------------GRMPGFGEK 131 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~--~~~~~~l~~~i~~g~------------~~MP~~~~~ 131 (172)
..+++++|++||+.+|++|||.+|.+... ..|.|.+.. ..+.+.+.+.+++|. ..||+|
T Consensus 335 ~~~~~~~G~~ly~~~Ca~CHg~~g~g~~~----~~P~L~~~~~~~~~~~~~~~~i~~G~~~~~~~~g~~~~~~MP~~--- 407 (442)
T 2zoo_A 335 KDEQIRFGQRVYEANCMACHQANGEGIPG----AFPPLAKSDYLNNNPLLGVNAIIKGLSGPIKVNNVNYNGVMPAM--- 407 (442)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCTTSCCBTT----TBCCCTTCHHHHHCHHHHHHHHHHCEESCEEETTEEECCEECCC---
T ss_pred cchhhHHHHHHHHhhhHHhCCCCCCCCCC----CCCCCCCcccccCCHHHHHHHHHcCccccccccCCccCCCCCCC---
Confidence 34568899999999999999988775432 144554321 114567788888884 469999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717 132 CTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
. |||+|+++|++||+++..+.-
T Consensus 408 ----------~-Lsd~ei~~l~~Yl~~~~~~~~ 429 (442)
T 2zoo_A 408 ----------N-LNDEDIANVITFVLNNWDNAG 429 (442)
T ss_dssp ----------C-CCHHHHHHHHHHHHTSTTCCC
T ss_pred ----------C-CCHHHHHHHHHHHHHhcCCCC
Confidence 5 999999999999999976543
No 62
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=99.18 E-value=5.1e-11 Score=89.05 Aligned_cols=76 Identities=25% Similarity=0.331 Sum_probs=53.8
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhc------------------CCCCCHHHHHHHHHhCC-----C
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQR------------------NGVDTEDEIYHVTYFGK-----G 123 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~------------------~~~~~~~~l~~~i~~g~-----~ 123 (172)
.+|+.+|++|| ++|.+||+.++.+ ..++.+. .+.+ ...|+.+.|.+.|.+++ .
T Consensus 41 ~~d~~~G~~lf-~~C~~CH~~~~~~-~~gP~L~--gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt 116 (140)
T 3m97_X 41 SADPAAGEKVF-GKCKACHKLDGND-GVGPHLN--GVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGT 116 (140)
T ss_dssp TCCHHHHHHHG-GGTTTTCCSSSCC-SSSCCCT--TCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTC
T ss_pred ccCHHHHHHHH-HhhhhhcCCCCCC-CcCCCcc--ccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCC
Confidence 46789999999 7999999974321 1222211 1110 01368999999999884 4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 124 ~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
.|| |. ..|+++|+++|++||+++
T Consensus 117 ~Mp-~~------------gllsdedi~aLiAYL~sL 139 (140)
T 3m97_X 117 KMA-FA------------GLPKIEDRANLIAYLEGQ 139 (140)
T ss_dssp SCC-CC------------CCCSHHHHHHHHHHHHTC
T ss_pred CCC-CC------------CCCCHHHHHHHHHHHHHc
Confidence 786 43 578999999999999986
No 63
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=99.17 E-value=1.5e-11 Score=91.02 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=52.9
Q ss_pred hhhHHhHHHHHHccCccccCCCCC-------CCCCCCCccc---------------hhh-----hc-CCCCCHHHHHHHH
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGN-------VIQPGATLFL---------------KDL-----QR-NGVDTEDEIYHVT 118 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~-------~~~~~~~~~~---------------p~l-----~~-~~~~~~~~l~~~i 118 (172)
.+|+++|++||.+ |++||...+. +...|+.+.. +.+ .. ...|+.+.|...|
T Consensus 2 ~gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l 80 (134)
T 2bh4_X 2 EGDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYV 80 (134)
T ss_dssp CCCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHH
T ss_pred CCcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHH
Confidence 3578999999976 9999985532 1112222110 011 11 1246788888877
Q ss_pred HhCC-------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717 119 YFGK-------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 119 ~~g~-------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
.++. ..|| | . |+++|+ +|++||.++...+-
T Consensus 81 ~~P~~~~pg~~~d~~a~t~Mp-f-------------~-Ls~~e~-dliaYL~sl~~~~~ 123 (134)
T 2bh4_X 81 TDPKPWLVEKTGDSAAKTKKT-F-------------K-LGKNQA-DVVAFLAQHSPDAG 123 (134)
T ss_dssp HCHHHHHHHHHCCTTCCCSCC-C-------------C-CCSCHH-HHHHHHHHTCTTC-
T ss_pred hCHHhcCCCcccCccccCCCC-C-------------C-CChHHH-HHHHHHHHcCCCCC
Confidence 6642 5677 6 5 999999 99999999876543
No 64
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.16 E-value=2.5e-11 Score=101.21 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=62.5
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC---CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG---VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGA 142 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~---~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~ 142 (172)
...+++|+++|..+|++||+.+|.+.. + .|+|.+.. ..+.+.+.+.+.+|+ +.||+|+ .
T Consensus 129 ~~~~~~G~~lf~~~Ca~CHg~~g~g~~-g----~P~L~~~~~~~g~~~~~l~~~i~~G~~~~Mp~~~------------~ 191 (311)
T 3mk7_C 129 PQAVKMGARLFANYCSICHGSDAKGSL-G----FPNLADQDWRWGGDAASIKTSILNGRIAAMPAWG------------Q 191 (311)
T ss_dssp HHHHHHHHHHHHHHTHHHHCTTSCCBT-T----BCCSSSSCCSSCCSHHHHHHHHHHCEECCBCCCH------------H
T ss_pred HHHHHHHHHHHhhhHHHhCCCCCCCCC-C----CCCCCCcccccCCCHHHHHHHHHhCCcCCCcccc------------c
Confidence 345789999999999999998876532 2 45565431 137899999999996 6899997 6
Q ss_pred CCCHHHHHHHHHHHHh-hhhC
Q 030717 143 RLQDEDIKLLAQFVKS-QADQ 162 (172)
Q Consensus 143 ~Lsd~ei~~VaaYl~~-~~~~ 162 (172)
.||++|+++|++||.+ +...
T Consensus 192 ~Ls~~ei~~laaYl~s~l~~~ 212 (311)
T 3mk7_C 192 AIGEEGVKNVAAFVRKDLAGL 212 (311)
T ss_dssp HHCHHHHHHHHHHHHHTTTCC
T ss_pred cCCHHHHHHHHHHHHhhccCC
Confidence 7999999999999999 7543
No 65
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.14 E-value=5.6e-11 Score=106.23 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=61.2
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~L 144 (172)
...+++.|++||..+|++|||.+|.+. .++.+..+.+.+. +.+.|...|++|. +.||+|+. ...|
T Consensus 50 ~~~~~~~G~~ly~~~Ca~CHg~~g~G~-~gp~L~~~~~~~~---~~~~l~~~i~~G~~~~Mp~~~~----------~~~L 115 (567)
T 1qks_A 50 SDAQYNEANKIYFERCAGCHGVLRKGA-TGKALTPDLTRDL---GFDYLQSFITYASPAGMPNWGT----------SGEL 115 (567)
T ss_dssp CHHHHHHHHHHHHHHTHHHHCTTSSCS-SSCCCCHHHHHHH---CHHHHHHHHTTCCCCCCTTTSC----------CCCC
T ss_pred CHHHHHHHHHHHhhhhHhhCCCCCCCC-CCCCCCchhhccC---CHHHHHHHHHhCCCCCCCCccc----------cCCC
Confidence 345688999999999999999887642 2333322333333 5888999999985 47999940 0479
Q ss_pred CHHHHHHHHHHHHhhhh
Q 030717 145 QDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 145 sd~ei~~VaaYl~~~~~ 161 (172)
|++||++|++||+++..
T Consensus 116 sd~ei~~l~~yi~~~~~ 132 (567)
T 1qks_A 116 SAEQVDLMANYLLLDPA 132 (567)
T ss_dssp CHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHhhccc
Confidence 99999999999998864
No 66
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=99.13 E-value=2.5e-11 Score=87.82 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=48.8
Q ss_pred hHHhHHHHHHccCccccCCCCC-------CCCCCCCcc---------------chhhh---c-CCCCCHHHHHHHHHhCC
Q 030717 69 DIQKGVSLFRQACIGCHDGGGN-------VIQPGATLF---------------LKDLQ---R-NGVDTEDEIYHVTYFGK 122 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg~~g~-------~~~~~~~~~---------------~p~l~---~-~~~~~~~~l~~~i~~g~ 122 (172)
|+++|++||. +|++||..++. +...|+.+. .+.|. . ...|+.+.|...|.+++
T Consensus 2 d~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P~ 80 (116)
T 1vyd_A 2 DAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPG 80 (116)
T ss_dssp CHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHH
T ss_pred CHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCHH
Confidence 6789999997 89999985421 111122211 01221 1 12578888888887763
Q ss_pred -------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 123 -------------GRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 123 -------------~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..|| | . |+++|. +|++||.++.
T Consensus 81 ~~~pg~~~d~~~~t~Mp-f-------------~-l~~~~~-dliaYL~sl~ 115 (116)
T 1vyd_A 81 AFLKEKLDDKKAKTEMA-F-------------K-LAKGGE-DVAAYLASVV 115 (116)
T ss_dssp HHHHHHHTCTTCCCSCC-C-------------C-CSSCHH-HHHHHHHHTC
T ss_pred HhCCCcccCccccCCCC-C-------------C-CCCHHH-HHHHHHHHhc
Confidence 5788 7 4 776666 9999999874
No 67
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.11 E-value=6.1e-11 Score=104.85 Aligned_cols=82 Identities=21% Similarity=0.457 Sum_probs=61.1
Q ss_pred chhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQCTFGARL 144 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~~~~~~~L 144 (172)
..++++.|++||+.+|++|||.+|.+.. ++.+ .+.++.. .+.+.|...+.+|+ +.||+|+. ...|
T Consensus 32 ~~~~~~~G~~l~~~~Ca~CHg~~g~g~~-~p~l-~~~~~~~--~~~~~l~~~i~~G~~~~Mp~~~~----------~~~l 97 (543)
T 1nir_A 32 SESEFNEAKQIYFQRCAGCHGVLRKGAT-GKPL-TPDITQQ--RGQQYLEALITYGTPLGMPNWGS----------SGEL 97 (543)
T ss_dssp CHHHHHHHHHHHHHHTHHHHTTTTCCSS-SSCC-SHHHHHH--HCHHHHHHHHHHCCSSSCCCSTT----------TTSS
T ss_pred ChhHHHHHHHHHhhhhHhhCCCCCCCCC-CCCC-cchhccc--CCHHHHHHHHHcCCCCCCCCccc----------ccCC
Confidence 3467889999999999999998876432 3322 2333221 25888999999997 58999941 0479
Q ss_pred CHHHHHHHHHHHHhhhh
Q 030717 145 QDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 145 sd~ei~~VaaYl~~~~~ 161 (172)
|++||++|++||.++..
T Consensus 98 s~~ei~~l~~yl~~~~~ 114 (543)
T 1nir_A 98 SKEQITLMAKYIQHTPP 114 (543)
T ss_dssp CHHHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999998864
No 68
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=99.11 E-value=1.6e-10 Score=91.19 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=51.7
Q ss_pred CchhhHHhHHHHHHccCccccCCCCCCCCCCCCccc--hhhhc------CC-CCC-HHHHHHHHHhCCCCCC-CCCCCCC
Q 030717 65 AQTVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFL--KDLQR------NG-VDT-EDEIYHVTYFGKGRMP-GFGEKCT 133 (172)
Q Consensus 65 a~~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~--p~l~~------~~-~~~-~~~l~~~i~~g~~~MP-~~~~~~~ 133 (172)
...+++++|++||+.+|++|||.+|.+...++.+.. ..+.. .+ .+. ...+...+ .+.|| .|.
T Consensus 30 ~~~~~~~~G~~Ly~~~Ca~CHG~~G~G~~~~P~L~g~~~~l~~~~~~~~~g~~~~~~~~l~~~~---~~~MP~~~~---- 102 (205)
T 2xts_B 30 PGSGDVATGDALFADNCASCHGDFAEGLDSWPVLAGGDGSLTDPRPVKTIGSYWPYLSTVYDYV---HRSMPFGSA---- 102 (205)
T ss_dssp SCEEEHHHHHHHHHHHTHHHHCTTSSCSTTSCCCSCCTTCTTSSSCCCCTTTTCCCHHHHHHHH---HHHCSTTSC----
T ss_pred CChhhHHHHHHHHHhhhHHhCCCCCCCCCCCCCccCCcccccccchhhhhccccchhHHHhccC---cCCCCcccc----
Confidence 344678999999999999999988765322222211 11110 01 111 22233322 23699 775
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 134 PRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 134 ~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
..||++||++|++||+++..
T Consensus 103 --------~~LsdeEi~aL~aYl~sl~~ 122 (205)
T 2xts_B 103 --------QTLSVDDTYAITAFLLYSNG 122 (205)
T ss_dssp --------SCCCHHHHHHHHHHHHHHTT
T ss_pred --------cCCCHHHHHHHHHHHHhccC
Confidence 68999999999999999854
No 69
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=98.65 E-value=1.4e-11 Score=104.00 Aligned_cols=78 Identities=23% Similarity=0.476 Sum_probs=58.8
Q ss_pred HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCC----------CCCHHHHHHHHHhCC-----CCCCCCCCCCCCC
Q 030717 71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNG----------VDTEDEIYHVTYFGK-----GRMPGFGEKCTPR 135 (172)
Q Consensus 71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~----------~~~~~~l~~~i~~g~-----~~MP~~~~~~~~~ 135 (172)
++|+++|+.+|++||+.+|.+... ...|+|.+.+ ..+.+.|.+.+++|+ ..||+|
T Consensus 237 ~~G~~lf~~~Ca~CHg~~g~G~~~---~~gP~L~gi~~r~~~~~G~~~~~~~~L~~~I~~g~~~~~~~~MP~~------- 306 (337)
T 2yev_B 237 ERGQQVFQQNCAACHGVARSMPPA---VIGPELGLWGNRTSLGAGIVENTPENLKAWIRDPAGMKPGVKMPGF------- 306 (337)
Confidence 789999999999999987764221 1245555321 246778888888883 379998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhCCC
Q 030717 136 GQCTFGARLQDEDIKLLAQFVKSQADQGW 164 (172)
Q Consensus 136 ~~~~~~~~Lsd~ei~~VaaYl~~~~~~gw 164 (172)
..|||+|+++|++||+++..++.
T Consensus 307 ------~~LsdeEi~aL~aYL~sL~~~~~ 329 (337)
T 2yev_B 307 ------PQLSEEDLDALVRYLEGLKVEGF 329 (337)
Confidence 47999999999999999986654
No 70
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.06 E-value=1.7e-11 Score=93.48 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=47.9
Q ss_pred hhhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHH---HHHhCCC-------CCCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYH---VTYFGKG-------RMPGFGEKCTPRG 136 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~---~i~~g~~-------~MP~~~~~~~~~~ 136 (172)
.+++++|+.|| .+|++||+.+|.+... ...|+|.+. +...+.. .+.+|.. .||+|.
T Consensus 3 ~~~~~~G~~l~-~~Ca~CHg~~g~g~~~---~~~P~L~~~---~~~~~~~~l~~~~~g~r~~~~~~~~Mp~~~------- 68 (183)
T 1h1o_A 3 SADAPAPYRVS-SDCMVCHGMTGRDTLY---PIVPRLAGQ---HKSYMEAQLKAYKDHSRADQNGEIYMWPVA------- 68 (183)
T ss_dssp ---------CG-GGTHHHHCBTTBCCSS---TTSCCCTTC---CHHHHHHHHHHHHTTCCCCHHHHHHTHHHH-------
T ss_pred cccHHHHHHHH-hHHHHhcCCCCCCCCC---CCCCCCCCC---CHHHHHHHHHHHHcCCCCCCCcchHHHHHH-------
Confidence 35678999999 9999999988764321 125667554 3444443 4555633 599996
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 137 QCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 137 ~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
..||++|+++|++||.++..
T Consensus 69 -----~~ls~~e~~al~~yl~~~~~ 88 (183)
T 1h1o_A 69 -----QALDSAKITALADYFNAQKP 88 (183)
T ss_dssp -----HTCCHHHHHHHHHHHHHCSS
T ss_pred -----HhCCHHHHHHHHHHHHhCCC
Confidence 67999999999999998764
No 71
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=99.03 E-value=1.2e-10 Score=85.01 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=51.6
Q ss_pred hhhHHhHHHHHHccCccccCCCC--------CCCCCCCCcc---------ch-------hhh---c-CCCCCHHHHHHHH
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGG--------NVIQPGATLF---------LK-------DLQ---R-NGVDTEDEIYHVT 118 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g--------~~~~~~~~~~---------~p-------~l~---~-~~~~~~~~l~~~i 118 (172)
.+|+++|++||+ +|++||...+ .+...|+.+. .+ .+. . ...|+.+.|..++
T Consensus 2 ~gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l 80 (124)
T 1cxc_A 2 EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV 80 (124)
T ss_dssp CSCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHH
Confidence 357899999994 8999998542 1111222221 01 110 0 1146778888888
Q ss_pred HhCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717 119 YFGKGRMPGFGEKCTP-RGQCTFGARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 119 ~~g~~~MP~~~~~~~~-~~~~~~~~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
.++...||.+...... ..+ .| ..++++|+.+|++||.++..+
T Consensus 81 ~~P~~~~pg~~~d~~a~t~M-~~-~l~~~~d~~dliaYL~sl~~~ 123 (124)
T 1cxc_A 81 QDPTKFLKEYTGDAKAKGKM-TF-KLKKEADAHNIWAYLQQVAVR 123 (124)
T ss_dssp HCHHHHHHHHHSCTTCCCSC-CC-CCCCHHHHHHHHHHHHHHCCC
T ss_pred hChHhhCCCcccCcccCCCC-CC-ccCCHHHHHHHHHHHHHcCCC
Confidence 7664444431000000 000 01 245799999999999998644
No 72
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.03 E-value=3.3e-11 Score=92.43 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=50.6
Q ss_pred HHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHh---CC---CCCCCCCCCCCCCCCCCCCCCCCHHH
Q 030717 75 SLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYF---GK---GRMPGFGEKCTPRGQCTFGARLQDED 148 (172)
Q Consensus 75 ~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~---g~---~~MP~~~~~~~~~~~~~~~~~Lsd~e 148 (172)
++|..+|++|||.+|.+.... +|.|++. +.+.|.+.+.+ |. ..|+++. ..||++|
T Consensus 5 ~~~a~~C~~CHg~~G~~~~~~----~P~LaG~---~~~~i~~~l~~~~~g~~~~~~M~~~~------------~~Ls~~d 65 (174)
T 3vrd_A 5 EMLANNCAGCHGTRGNSAGPA----SPSIAQM---DPAVFVEVMEQFKSGEIQSTIMGRIA------------KGYSTAD 65 (174)
T ss_dssp HHHHGGGHHHHCGGGCCCCSS----SCCCTTC---CHHHHHHHHHHHHHTSSCCSSHHHHH------------TTSCHHH
T ss_pred HHHHhhHHHhCCCcCCCCCCC----CCCcCCC---CHHHHHHHHHHhhcCCccccccchhh------------ccCCHHH
Confidence 455689999999887643332 6778665 67777776654 42 2688886 7899999
Q ss_pred HHHHHHHHHhhh
Q 030717 149 IKLLAQFVKSQA 160 (172)
Q Consensus 149 i~~VaaYl~~~~ 160 (172)
|++|++|+.++.
T Consensus 66 i~~la~Y~~s~~ 77 (174)
T 3vrd_A 66 FQKMAEYFKQQT 77 (174)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHhhhhccc
Confidence 999999999875
No 73
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=98.93 E-value=6e-10 Score=85.26 Aligned_cols=74 Identities=26% Similarity=0.352 Sum_probs=52.8
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHH---HHhCC------------CCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHV---TYFGK------------GRMPGFGEKC 132 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~---i~~g~------------~~MP~~~~~~ 132 (172)
+|+++|++| ..+|++||+.++.+... ..|+|.+. ....+... +.+|. ..||+|.
T Consensus 2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~----~~P~L~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~Mp~~~--- 70 (190)
T 1m70_A 2 GDAEAGQGK-VAVCGACHGVDGNSPAP----NFPKLAGQ---GERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGML--- 70 (190)
T ss_dssp CCHHHHHTT-CGGGHHHHCTTSCCCCT----TSCCCTTC---CHHHHHHHHHHHHHHHSTTCCTTSSCCCGGGTTTT---
T ss_pred cchhHHHHH-HhHHHhhcCCCCCCCCC----CCCCCCCC---CHHHHHHHHHHHHcCCccccccccCCCCcchHHHH---
Confidence 468899999 68999999988765322 25677654 23333322 24442 2699986
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 133 TPRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
..||++|+++|++||.++..
T Consensus 71 ---------~~ls~~e~~~l~~yl~~~~~ 90 (190)
T 1m70_A 71 ---------DPLSDQDLEDIAAYFSSQKG 90 (190)
T ss_dssp ---------TTCCHHHHHHHHHHHHHSCC
T ss_pred ---------HHCCHHHHHHHHHHHHhCCC
Confidence 68999999999999998754
No 74
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.71 E-value=3.4e-09 Score=86.38 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=61.4
Q ss_pred ccchhhhHHHHHHHhHHHHhhh-hcccccCchhhHHhHHHHHHc-------cCccccCCC-CCCCCCCCCccchhhhcC-
Q 030717 37 ELELQKYDTYNVLCLPVSLGFF-HAAVSLAQTVDIQKGVSLFRQ-------ACIGCHDGG-GNVIQPGATLFLKDLQRN- 106 (172)
Q Consensus 37 ~~~~~~mr~l~~l~~~l~~~~~-~~a~~~a~~~d~~~G~~lf~~-------~C~~CHg~~-g~~~~~~~~~~~p~l~~~- 106 (172)
.+....|+-+...+..+..... ..........++++|++||.. +|++||+.+ |.+. +.+...+.++..
T Consensus 125 ~l~~~~i~alaaY~~sls~~~~~~~~~~~~~~~~~~~G~~lF~~~~g~~~~~Ca~CHg~~~G~~~--g~~~l~~~~~~~~ 202 (261)
T 1h32_A 125 DYIGPDMTAMVALIASVSRGMPVSVAIDGPAQSTWEKGREIYYTRYGQLDLSCASCHEQYFDHYI--RADHLSQGQINGF 202 (261)
T ss_dssp CTTSHHHHHHHHHHHHTTTTSBCCCCCSGGGHHHHHHHHHHHTCCBTTTTBCHHHHHTTSTTSEE--TTEECCCCCCTTC
T ss_pred ccCHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHHHhcCCCCCcccccCCCCCCCCC--CCCcCCCCcccCC
Confidence 3455666665554444332110 001112334568899999977 699999986 4211 111111122211
Q ss_pred -----CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 107 -----GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 107 -----~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
.......+...+.++...|+... ..||++||.+|++||.++..
T Consensus 203 p~Yr~~~g~~~tl~~ri~~~~~~m~~~~------------~~Ls~~ei~aLaaYl~sL~~ 250 (261)
T 1h32_A 203 PSYRLKNARLNAVHDRFRGCIRDTRGVP------------FAVGSPEFVALELYVASRGN 250 (261)
T ss_dssp SEEETTTTEEECHHHHHHHHHHTTTBCC------------CCTTCHHHHHHHHHHHHHTT
T ss_pred cceeccCcchhhHHHHHHHHHhccCCCC------------CCCChHHHHHHHHHHHHhcC
Confidence 00011223334443334788886 78999999999999999864
No 75
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.71 E-value=3.7e-09 Score=86.31 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=48.9
Q ss_pred chhhHHhHHHHHHcc-------CccccCCCCCCCCCCCCccchhhhcC------CCCCHHHHHHHHHhCCCCCCCCCCCC
Q 030717 66 QTVDIQKGVSLFRQA-------CIGCHDGGGNVIQPGATLFLKDLQRN------GVDTEDEIYHVTYFGKGRMPGFGEKC 132 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~-------C~~CHg~~g~~~~~~~~~~~p~l~~~------~~~~~~~l~~~i~~g~~~MP~~~~~~ 132 (172)
...++++|++||..+ |++||+.+ .+...+.+...|.+++. .......+...+......|+.+.
T Consensus 158 ~~~~~~~G~~lF~~~~G~~~~aCa~CHg~~-~G~~~~~~~l~~g~~~~~p~Y~~~~~~~~t~~~r~~~~~~~M~~~~--- 233 (264)
T 2c1d_A 158 AAPYWEHGKEIYYTRYGQLEMSCANCHEDN-AGNMIRADHLSQGQINGFPTYRLKDSGMVTAQHRFVGCVRDTRAET--- 233 (264)
T ss_dssp GHHHHHHHHHHHHCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCTTCSEEETTTTEEECHHHHHHHHHHTTTBCC---
T ss_pred ccHHHHHHHHHHHhhcCCCCCcccccCCCC-CCCCcCCCcCCCccccCCcchhhcccccccHHHHHHHHHhhccCCC---
Confidence 345688999999875 99999976 22111111111111110 00011122333333233699887
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 133 TPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..||++||++|++||.++.
T Consensus 234 ---------~~Ls~~ei~aLaaYv~sL~ 252 (264)
T 2c1d_A 234 ---------FKAGSDDFKALELYVASRG 252 (264)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHT
T ss_pred ---------CCCCHHHHHHHHHHHHHcc
Confidence 7899999999999999986
No 76
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.68 E-value=1e-08 Score=84.28 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=52.8
Q ss_pred HHhHHHHHHc-------cCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhC----CC------CCCCCCCCC
Q 030717 70 IQKGVSLFRQ-------ACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFG----KG------RMPGFGEKC 132 (172)
Q Consensus 70 ~~~G~~lf~~-------~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g----~~------~MP~~~~~~ 132 (172)
++.|++||.. +|++||+.+|.+...|....+|.+...+. ....|...|.++ .+ .|+++.
T Consensus 53 v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~~g-~v~~L~~~I~~c~~~~~g~~~~~~~M~p~~--- 128 (275)
T 3oa8_A 53 VDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTG-KVMDLEQRLLWCMETIQGRDTKPLVAKPFS--- 128 (275)
T ss_dssp HHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETTTT-EEECHHHHHHHHHHHTTCCCCHHHHHSCSC---
T ss_pred HHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCccccCC-CHHHHHHHHHHHHHcccccccccccccccc---
Confidence 7889999975 89999997765433343333677754321 222344433332 12 378997
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 133 TPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 133 ~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
..|+++|+.+|++|+.++.
T Consensus 129 ---------~~Ls~~di~~laaY~asls 147 (275)
T 3oa8_A 129 ---------GPGRTSDMEDLVAFIANKS 147 (275)
T ss_dssp ---------BTTBCCHHHHHHHHHHHTT
T ss_pred ---------ccCCHHHHHHHHHHHHHcC
Confidence 6799999999999999986
No 77
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=98.61 E-value=1.8e-08 Score=68.14 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=42.0
Q ss_pred HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHH
Q 030717 71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDI 149 (172)
Q Consensus 71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei 149 (172)
..|+++|..+|.+||+.+.....+. ..+.+.+...+. .|+ .|+ ..||++|+
T Consensus 19 ~~G~~l~~~~C~~CH~~~~i~~~p~------------~~~~~~W~~~v~----~M~~~~g------------~~ls~~e~ 70 (81)
T 2blf_B 19 QPGFEAAQNNCAACHSVDYINTQPP------------GKGQAFWDAEVQ----KMIKVYH------------APVDEADA 70 (81)
T ss_dssp STHHHHHHHHTTSSSCTHHHHTSCT------------TCCHHHHHHHHH----HHHHTSC------------CCCCHHHH
T ss_pred cchHHHHHHHHHHhcCCcccccCcC------------cCCHHHHHHHHH----HHHHHcC------------CCCCHHHH
Confidence 4799999999999998542110000 114555555553 466 565 67999999
Q ss_pred HHHHHHHHhh
Q 030717 150 KLLAQFVKSQ 159 (172)
Q Consensus 150 ~~VaaYl~~~ 159 (172)
++|++||.+.
T Consensus 71 ~~I~~YL~~~ 80 (81)
T 2blf_B 71 KAIADYLAKT 80 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999763
No 78
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=98.57 E-value=1.7e-08 Score=70.22 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=42.2
Q ss_pred hhHHhHHHHHHccCccccCCCCCCCCCCCCccchhhh-cC-CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQ-RN-GVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQ 145 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~-~~-~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Ls 145 (172)
.++..|++||+++|.+||+.++. .+.+. .+ ....-+.+.+.+ ..||+- .+|
T Consensus 25 ~~~~~g~~l~~~kC~~CHs~d~v---------~~~~~~~~~~~e~w~~iv~~M----~~mpg~--------------~Is 77 (92)
T 3a9f_A 25 FDFDAAKKLVDVRCNKCHTLDSV---------ADLFRTKYKKTGQVNLIVKRM----QGFPGS--------------GIS 77 (92)
T ss_dssp CCHHHHHHHHHHHSSSSSCSGGG---------HHHHHHHTTTTTCHHHHHHHH----HHSTTC--------------CCC
T ss_pred cChHhHHHHHHhHHHHhcCCccc---------ccccccccccHHHHHHHHHHH----HhCCCC--------------CCC
Confidence 36788999999999999986531 22221 11 111222233322 358764 599
Q ss_pred HHHHHHHHHHHHhh
Q 030717 146 DEDIKLLAQFVKSQ 159 (172)
Q Consensus 146 d~ei~~VaaYl~~~ 159 (172)
++|+..|+.||...
T Consensus 78 ~eda~~Iv~YLa~~ 91 (92)
T 3a9f_A 78 DDDAKTIGIWLHEK 91 (92)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 79
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.50 E-value=1.2e-08 Score=83.93 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=61.4
Q ss_pred cchhhhHHHHHHHhHHHHhhhhcc--cccCchhhHHhHHHHH-------HccCccccCCCCCCCCCCCCccchhhhcC--
Q 030717 38 LELQKYDTYNVLCLPVSLGFFHAA--VSLAQTVDIQKGVSLF-------RQACIGCHDGGGNVIQPGATLFLKDLQRN-- 106 (172)
Q Consensus 38 ~~~~~mr~l~~l~~~l~~~~~~~a--~~~a~~~d~~~G~~lf-------~~~C~~CHg~~g~~~~~~~~~~~p~l~~~-- 106 (172)
++...|+-+...+..+........ ........+++|++|| ..+|++|||.+|.+.... .+|.|.+.
T Consensus 131 Ls~~di~~laaY~asls~g~p~~~~~~~~~~~~~~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~---~~P~L~g~~q 207 (275)
T 3oa8_A 131 GRTSDMEDLVAFIANKSDGVKIKVALATPQEKEMYAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQ---ALPQLDVPGK 207 (275)
T ss_dssp TBCCHHHHHHHHHHHTTTTCBCCCCCCSHHHHHHHHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTE---ECCCCSSSSH
T ss_pred CCHHHHHHHHHHHHHcCcCCCCCcccCCcccHHHHHHHHHHHHhccCCCCCchHhhCCCcCCCCCcc---CCCccccccc
Confidence 366777766655544432110000 0111234678999999 468999999887753221 13444321
Q ss_pred ------C-----------CCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 030717 107 ------G-----------VDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 107 ------~-----------~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
+ .++... .+.+....|+... ..|+++||.+|++||.++.
T Consensus 208 g~~~~~gq~p~Y~~~q~~~~~~~~---R~~~c~~~M~~~a------------~~l~~~ei~ALa~Yl~~ls 263 (275)
T 3oa8_A 208 DAQLTMATWPTYRVSQSALRTMQH---RMWDCYRQMRMPA------------PDYASEAVTALTLYLTKQA 263 (275)
T ss_dssp HHHHHHTTCSEEEGGGTEEECHHH---HHHHHHHHTTCCC------------CCTTCHHHHHHHHHHHHHT
T ss_pred ccccccccCHHHHHHHhhhhhhhh---cccchhhhhccCC------------CCCChHHHHHHHHHHHHhC
Confidence 1 112222 2221123688887 7899999999999999885
No 80
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=98.20 E-value=2.9e-07 Score=80.34 Aligned_cols=66 Identities=24% Similarity=0.486 Sum_probs=46.0
Q ss_pred HhHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHH
Q 030717 71 QKGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDI 149 (172)
Q Consensus 71 ~~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei 149 (172)
+.|++||..+|++||+.++.+... .+.... .+.+.+...+. .|| .++ ..||++|+
T Consensus 2 a~Gk~LF~~NCAaCHGagaqG~~~-------~Is~qr-~S~e~Wq~tV~----RMp~a~G------------a~LSdEEI 57 (494)
T 1jmx_A 2 EQGPSLLQNKCMGCHIPEGNDTYS-------RISHQR-KTPEGWLMSIA----RMQVMHG------------LQISDDDR 57 (494)
T ss_dssp CCHHHHHHHHHBTTBCEEETTEET-------TGGGCE-ECHHHHHHHHH----HHHHHHC------------CCCCHHHH
T ss_pred chhhHHHhhhhhhhcCCCccCccc-------cccccC-CCHHHHHHHHH----hhhhhhc------------CCCCHHHH
Confidence 369999999999999976553211 111111 24565555554 388 665 67999999
Q ss_pred HHHHHHHHhhh
Q 030717 150 KLLAQFVKSQA 160 (172)
Q Consensus 150 ~~VaaYl~~~~ 160 (172)
++|++||.+..
T Consensus 58 ~aVAaYLasls 68 (494)
T 1jmx_A 58 RTLVKYLADKQ 68 (494)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998875
No 81
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=98.09 E-value=7.9e-06 Score=68.58 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+++|++||+++.+.
T Consensus 285 ~~Ls~~E~~~LvaFL~tLt~~ 305 (328)
T 1zzh_A 285 ATLDDTQVDQITAFLGTLTGE 305 (328)
T ss_dssp CCCCHHHHHHHHHHHGGGCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 579999999999999998654
No 82
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.04 E-value=6.3e-07 Score=72.99 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=46.4
Q ss_pred hhHHhHHHHHHc-------cCccccCCCCCCCCCCCCccchhhhcC-C-CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQ-------ACIGCHDGGGNVIQPGATLFLKDLQRN-G-VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQ 137 (172)
Q Consensus 68 ~d~~~G~~lf~~-------~C~~CHg~~g~~~~~~~~~~~p~l~~~-~-~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~ 137 (172)
..++.|++||.. +|++|||.++ ...+....+|.+... + ..+.+. .+..+. ..|....
T Consensus 60 ~~v~~G~~LF~~~~~~~~~sCasCHG~~g--~~~g~~~~~p~~~~~~G~~~~l~~---ri~~~~~~~M~~~~-------- 126 (264)
T 2c1d_A 60 VFVDRGLDKWNAAMGVNGESCASCHQGPE--SMAGLRAVMPRVDEHTGKLMIMED---YVNACVTERMGLEK-------- 126 (264)
T ss_dssp HHHHHHHHHHHSCCSTTSCCHHHHHCSGG--GGTTTGGGCSEECTTTCCEECHHH---HHHHHHHHHHCCCC--------
T ss_pred HHHHHHHHHHcCCCCCCCcChhhcCCCCC--cccchhhhhhhhhhhcCCccCHHH---HHHHHHhcccCCCC--------
Confidence 347899999988 9999997653 111221123333211 1 223332 222221 1366654
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
..|+++|+.+|++|+.++..
T Consensus 127 ----~~l~~~~~~alaaY~~sls~ 146 (264)
T 2c1d_A 127 ----WGVTSDNMKDMLSLISLQSR 146 (264)
T ss_dssp ----CCTTSHHHHHHHHHHHHTTT
T ss_pred ----ccccHHHHHHHHHHHHHHhc
Confidence 46899999999999999864
No 83
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=97.99 E-value=1.3e-06 Score=63.58 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=45.6
Q ss_pred chhhHHhHHHHHH----------ccCccccCCCCCCCC----CCC--CccchhhhcCCCCCHHHHHH-HHHhCCCCCCCC
Q 030717 66 QTVDIQKGVSLFR----------QACIGCHDGGGNVIQ----PGA--TLFLKDLQRNGVDTEDEIYH-VTYFGKGRMPGF 128 (172)
Q Consensus 66 ~~~d~~~G~~lf~----------~~C~~CHg~~g~~~~----~~~--~~~~p~l~~~~~~~~~~l~~-~i~~g~~~MP~~ 128 (172)
...++++|++||. ..|++||+.+-...+ .+. .+..|..-...+.+...+.+ ..++-..+ +
T Consensus 24 ~~~~A~rGkalf~~~~~~~~g~~~sCaSCH~~~~t~~G~h~~Tgk~I~PlAp~~n~~Rftd~akVekwf~rnCn~v---l 100 (124)
T 1e8e_A 24 EAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEFTKHCNDI---L 100 (124)
T ss_dssp CCCCSSSTTGGGTCCEEETTTEEECTTTTSCSCTTSCBCCTTTCCCBCCCCTTTSTTSSCCSTTHHHHHHHHHHHH---T
T ss_pred chhhHHHHHHHHhccccccCCCCCcccccCCCCCCcCcccccCcccccccccccCccccCCHHHHHHHHHHHhHHH---H
Confidence 3456789999993 589999996532211 111 11111111112223333222 22222222 3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhC
Q 030717 129 GEKCTPRGQCTFGARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
+ ..+|++|..||++||.+++.+
T Consensus 101 g------------r~cTa~EK~D~~ayL~s~~~~ 122 (124)
T 1e8e_A 101 G------------ADCSPSEKANFIAYLLTETKP 122 (124)
T ss_dssp S------------SCCCHHHHHHHHHHHTTCCCC
T ss_pred c------------cCCCHHHHHHHHHHHHHcCCC
Confidence 3 679999999999999998654
No 84
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=97.97 E-value=4.7e-06 Score=72.56 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=44.7
Q ss_pred hHHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHH
Q 030717 72 KGVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMP-GFGEKCTPRGQCTFGARLQDEDIK 150 (172)
Q Consensus 72 ~G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP-~~~~~~~~~~~~~~~~~Lsd~ei~ 150 (172)
.|++||+.+|++||+.+..+...+. ...+ .+.+.+...+. .|+ .++ ..+|++|+.
T Consensus 2 ~GkeLv~anCasCHsad~~G~~~rI-----s~q~---~t~e~Wq~tV~----RM~~~~G------------a~ISdEE~~ 57 (489)
T 1pby_A 2 TGEEVLQNACAACHVQHEDGRWERI-----DAAR---KTPEGWDMTVT----RMMRNHG------------VALEPEERA 57 (489)
T ss_dssp CHHHHHHHTGGGTSCBCTTSCBTTG-----GGEE---ECHHHHHHHHH----HHHHHSC------------CCCCHHHHH
T ss_pred ChHHHHHhhhHhhcCCCcccccccc-----ccCc---CCHHHHHHHHH----hhhhhcC------------CCCCHHHHH
Confidence 4899999999999997765322221 2212 25666666554 366 333 579999999
Q ss_pred HHHHHHHhhh
Q 030717 151 LLAQFVKSQA 160 (172)
Q Consensus 151 ~VaaYl~~~~ 160 (172)
.|++||....
T Consensus 58 aIaaYLAa~y 67 (489)
T 1pby_A 58 AIVRHLSDTR 67 (489)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999996553
No 85
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=97.95 E-value=6.2e-06 Score=68.63 Aligned_cols=21 Identities=10% Similarity=0.409 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+.+|++||+++.++
T Consensus 265 ~~Ls~~e~~~LvaFL~sLt~~ 285 (308)
T 1iqc_A 265 REFNKDEVSKIVAFLKTLTGD 285 (308)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred cCCCHHHHHHHHHHHHHcCCC
Confidence 579999999999999998754
No 86
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=97.92 E-value=8.8e-06 Score=68.17 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+++|++||+++.+.
T Consensus 282 ~~Ls~~E~~~LvaFL~tLt~~ 302 (323)
T 2vhd_A 282 KQLAPDDVENIVAFLHSLSGK 302 (323)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 579999999999999998754
No 87
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=97.88 E-value=8e-06 Score=68.41 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+.+|++||+++.++
T Consensus 273 ~~Ls~~E~~~LvaFL~sLt~~ 293 (320)
T 3o5c_A 273 QKLTEKETKEMVAFLNSLTGE 293 (320)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred cCCCHHHHHHHHHHHHHcCCC
Confidence 679999999999999999543
No 88
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=97.84 E-value=7.6e-06 Score=58.59 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=48.1
Q ss_pred hhhHHhHHHHHH----------ccCccccCCCCCCC---CCCCC--ccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCC
Q 030717 67 TVDIQKGVSLFR----------QACIGCHDGGGNVI---QPGAT--LFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEK 131 (172)
Q Consensus 67 ~~d~~~G~~lf~----------~~C~~CHg~~g~~~---~~~~~--~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~ 131 (172)
..++++|++||. ..|++||+.+.... ..|.. +..|..-...+.+.+.+.+....-.+ --++
T Consensus 19 ~~~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~~g~~~tgk~I~p~Ap~~np~RftD~akvekwf~rnc~--~v~g-- 94 (112)
T 1dw0_A 19 PADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSARVEKWLGRNCN--SVIG-- 94 (112)
T ss_dssp CCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSSTTTSTTTTCCHHHHHHHHHHHHH--HHHS--
T ss_pred cccHHHHHHHHhhhcccCCCCCCcccccCCCCcccCcccccCCcccCcCCccCccccCCHHHHHHHHHhhhh--HHHc--
Confidence 357899999992 37999999775431 11211 11233222345566666665432211 1133
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 030717 132 CTPRGQCTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 132 ~~~~~~~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
...|.+|-.|+++||.++
T Consensus 95 ----------r~cta~EK~d~l~~l~~~ 112 (112)
T 1dw0_A 95 ----------RDCTPGEKADLLAWLAAQ 112 (112)
T ss_dssp ----------SCCCHHHHHHHHHHHHTC
T ss_pred ----------ccCCHHHHHHHHHHHHhC
Confidence 678999999999999874
No 89
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=97.81 E-value=9.2e-07 Score=71.91 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=46.9
Q ss_pred hhHHhHHHHHHc-------cCccccCCCCCCCCCCCCccchhhhcC-C-CCCHHHHHHHHHhCC-CCCCCCCCCCCCCCC
Q 030717 68 VDIQKGVSLFRQ-------ACIGCHDGGGNVIQPGATLFLKDLQRN-G-VDTEDEIYHVTYFGK-GRMPGFGEKCTPRGQ 137 (172)
Q Consensus 68 ~d~~~G~~lf~~-------~C~~CHg~~g~~~~~~~~~~~p~l~~~-~-~~~~~~l~~~i~~g~-~~MP~~~~~~~~~~~ 137 (172)
..++.|++||.. +|++||+.++. ...+....+|.+... + ..+.+. .+..+. ..|+...
T Consensus 56 ~~v~~G~~LF~~~~~~~~~sCasCHg~~~~-~~~g~~~~~p~~~~~~G~~~~le~---~i~~~~~~~M~~~~-------- 123 (261)
T 1h32_A 56 VFVEEARAVWDRPEGTEGKACADCHGAVDD-GMYGLRAVYPKYVESAGKVRTVEQ---MINACRTSRMGAPE-------- 123 (261)
T ss_dssp HHHHHHHHHHTSCCSTTCCCHHHHHCSHHH-HTTTHHHHCSEEETTTTEEECHHH---HHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHcCCCCCCCcChhHhCcCCCc-cccchhhhhhhhhhhcCCcccHHH---HHHHHHhcccCCCC--------
Confidence 457899999988 99999975421 011111123444321 1 223332 222221 2477654
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQAD 161 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~~~ 161 (172)
..|+++|+.+|++|+.++..
T Consensus 124 ----~~l~~~~i~alaaY~~sls~ 143 (261)
T 1h32_A 124 ----WDYIGPDMTAMVALIASVSR 143 (261)
T ss_dssp ----CCTTSHHHHHHHHHHHHTTT
T ss_pred ----cccCHHHHHHHHHHHHHHhc
Confidence 46899999999999999864
No 90
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=97.78 E-value=4.7e-05 Score=64.14 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+++|++||.++.+.
T Consensus 296 ~~Ls~~E~~~LvaFL~sLt~~ 316 (338)
T 2c1v_A 296 TELTDQQAEDITAFLGTLTGE 316 (338)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 469999999999999998653
No 91
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=97.74 E-value=6.9e-06 Score=64.35 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=40.1
Q ss_pred hhHHhHHHHH-HccCccccC--CCCCCC--------------------CCCCCccchhhhcCC-CCCHHHHHHHHHhC--
Q 030717 68 VDIQKGVSLF-RQACIGCHD--GGGNVI--------------------QPGATLFLKDLQRNG-VDTEDEIYHVTYFG-- 121 (172)
Q Consensus 68 ~d~~~G~~lf-~~~C~~CHg--~~g~~~--------------------~~~~~~~~p~l~~~~-~~~~~~l~~~i~~g-- 121 (172)
....+|++|| +..|..||. ..+... --|.....|+|.+.+ ..+.+++...+.++
T Consensus 51 ~~~~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R~s~~wl~~~I~dPq~ 130 (203)
T 3mk7_B 51 ALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRYSDDWHRAHLYNPRN 130 (203)
T ss_dssp HHHHHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTTSCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhccCCHHHHHHHHhCccc
Confidence 4467899999 567999998 332110 001122356776654 45788888888776
Q ss_pred ---CCCCCCCC
Q 030717 122 ---KGRMPGFG 129 (172)
Q Consensus 122 ---~~~MP~~~ 129 (172)
...||+|.
T Consensus 131 v~PGS~MPay~ 141 (203)
T 3mk7_B 131 VVPESKMPSYP 141 (203)
T ss_dssp HSTTCCCCCCT
T ss_pred cCCCCCCCCCc
Confidence 34899995
No 92
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=97.69 E-value=7.5e-05 Score=62.53 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHhhhhCC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQG 163 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~g 163 (172)
..||++|+++|++||.++.+..
T Consensus 282 ~~Ls~~e~~~LvAFL~sLt~~~ 303 (326)
T 1nml_A 282 TELNNDEVKSIVAFLKTLTGNV 303 (326)
T ss_dssp CCCCHHHHHHHHHHHGGGCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCC
Confidence 5799999999999999997543
No 93
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=97.58 E-value=0.00018 Score=60.76 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
..||++|+.+|++||+++.++
T Consensus 304 ~~Ls~~E~~~LvaFL~sLt~~ 324 (345)
T 3hq9_A 304 IKLSDDESEAIAAFLGSLTGK 324 (345)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCCC
Confidence 689999999999999999654
No 94
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=97.33 E-value=0.00031 Score=59.23 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQ 162 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~ 162 (172)
-.||++|+++|++||.++.++
T Consensus 299 ~~Lt~~E~~~LvAFL~tLtd~ 319 (341)
T 4aan_A 299 ISITDADADKIVTFLNTLTGA 319 (341)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHccCCC
Confidence 469999999999999999754
No 95
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=97.24 E-value=0.0013 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.774 Sum_probs=19.7
Q ss_pred chhhHHhHHHHHHccCccccCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~ 88 (172)
..+.+++|.++|.++|++||+..
T Consensus 25 D~aslqRG~qvy~~~CaaCHsl~ 47 (248)
T 3cx5_D 25 DHASIRRGYQVYREVCAACHSLD 47 (248)
T ss_dssp CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred chHhHhhhHHHHHHhhhhccCcc
Confidence 34568999999999999999965
No 96
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=97.11 E-value=0.00099 Score=56.78 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhCCCCCcC
Q 030717 142 ARLQDEDIKLLAQFVKSQADQGWPKIE 168 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~~~~gw~~~~ 168 (172)
..||++|+++|++||.++.+.....+-
T Consensus 332 ~~Lt~~E~~dLVAFLkTLTd~~~~~l~ 358 (373)
T 3sjl_A 332 LMLDDGRVDALVAFLETLTDRRYEPLL 358 (373)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGGGGG
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccc
Confidence 579999999999999999766555443
No 97
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=96.99 E-value=0.0027 Score=51.60 Aligned_cols=21 Identities=24% Similarity=0.740 Sum_probs=18.5
Q ss_pred hhHHhHHHHHHccCccccCCC
Q 030717 68 VDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 68 ~d~~~G~~lf~~~C~~CHg~~ 88 (172)
+.+++|.++|.++|++||+..
T Consensus 45 aslqRG~qVy~evCaaCHsl~ 65 (263)
T 2yiu_B 45 HQLQRGLQVYTEVCSACHGLR 65 (263)
T ss_dssp HHHHHHHHHHHHTGGGTCCCT
T ss_pred HHHHHHHHHHHHHhhccCCcc
Confidence 458999999999999999954
No 98
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=96.92 E-value=0.0023 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=19.6
Q ss_pred chhhHHhHHHHHHccCccccCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~ 88 (172)
..+.+++|.++|.++|++||+..
T Consensus 22 D~~slqRG~qvy~~~CaaCHSl~ 44 (241)
T 1pp9_D 22 DHTSIRRGFQVYKQVCSSCHSMD 44 (241)
T ss_dssp CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred chHHHhhhHHHHHHhhhhccCcc
Confidence 34568999999999999999964
No 99
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=95.36 E-value=0.014 Score=43.15 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=39.8
Q ss_pred HHHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHH
Q 030717 73 GVSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG-FGEKCTPRGQCTFGARLQDEDIKL 151 (172)
Q Consensus 73 G~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~-~~~~~~~~~~~~~~~~Lsd~ei~~ 151 (172)
++++|..+|++||..- .|.+ .+.+.+..++. .|.. |+. .-.|++++...
T Consensus 16 ~~~~y~~~C~~CH~a~-----------pp~~-----lpansW~~il~----~m~~HfG~----------~a~Ld~~~~~~ 65 (139)
T 2fw5_A 16 TDPLTRTECSACHMAY-----------PAAL-----LPARSWTALMA----DLPNHFGE----------DASLDEASRGQ 65 (139)
T ss_dssp CCHHHHHHTTSSSCCC-----------CGGG-----SCHHHHHHHHT----CGGGBTTB----------CCCCCHHHHHH
T ss_pred cHHHHHHHHHhccCCC-----------Cccc-----CCHHHHHHHHH----HHHHhccc----------ccCCCHHHHHH
Confidence 4678999999999721 1112 15777777773 4552 220 13599999999
Q ss_pred HHHHHHhhh
Q 030717 152 LAQFVKSQA 160 (172)
Q Consensus 152 VaaYl~~~~ 160 (172)
|.+||..-+
T Consensus 66 I~~YLq~~A 74 (139)
T 2fw5_A 66 IESYLVANA 74 (139)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHcc
Confidence 999998775
No 100
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=95.25 E-value=0.026 Score=40.88 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.6
Q ss_pred HHHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHH
Q 030717 74 VSLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPG-FGEKCTPRGQCTFGARLQDEDIKLL 152 (172)
Q Consensus 74 ~~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~-~~~~~~~~~~~~~~~~Lsd~ei~~V 152 (172)
+++|..+|++||..- .|.+ .+.+.+..++. .|.. |+. .-.|++++...|
T Consensus 6 ~~~y~~~C~~CH~a~-----------pp~~-----lpa~sW~~il~----~m~~HfG~----------~a~Ld~~~~~~I 55 (125)
T 2fwt_A 6 DPLTRTECSACHMAY-----------PAAL-----LPARSWTALMA----DLPNHFGE----------DASLDEASRGQI 55 (125)
T ss_dssp CHHHHHHTSSSSCCC-----------CGGG-----SCHHHHHHHHT----TGGGBTTB----------CCCCCHHHHHHH
T ss_pred HHHHHHHHHhccCCC-----------Cccc-----CCHHHHHHHHH----HHHHhccc----------ccCCCHHHHHHH
Confidence 578999999999721 1111 15777777773 4552 221 135999999999
Q ss_pred HHHHHhhhh
Q 030717 153 AQFVKSQAD 161 (172)
Q Consensus 153 aaYl~~~~~ 161 (172)
.+||..-+.
T Consensus 56 ~~YLq~~A~ 64 (125)
T 2fwt_A 56 ESYLVANAA 64 (125)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHhcc
Confidence 999987764
No 101
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=95.24 E-value=0.0076 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.696 Sum_probs=19.5
Q ss_pred chhhHHhHHHHHHccCccccCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~ 88 (172)
..+.+++|.++|.+.|++||+..
T Consensus 19 D~asLqRG~qvy~evCa~CHsl~ 41 (258)
T 1zrt_D 19 DQAQLRRGFQVYNEVCSACHGMK 41 (258)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCT
T ss_pred CHHHHHHHHHHHHHHHhhcCCch
Confidence 34568999999999999999954
No 102
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=95.04 E-value=0.0095 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.715 Sum_probs=19.6
Q ss_pred chhhHHhHHHHHHccCccccCCC
Q 030717 66 QTVDIQKGVSLFRQACIGCHDGG 88 (172)
Q Consensus 66 ~~~d~~~G~~lf~~~C~~CHg~~ 88 (172)
..+.+++|.++|.+.|++||+..
T Consensus 21 D~asLqRG~qVy~evCaaCHsl~ 43 (269)
T 2qjy_B 21 DQHQLQRGLQVYTEVCAACHGMK 43 (269)
T ss_dssp CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred CHHHHHHHHHHHHHHHhhcCCch
Confidence 34568999999999999999954
No 103
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=94.72 E-value=0.004 Score=54.48 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=19.7
Q ss_pred hhhHHhHHHHHHccCccccCCCCC
Q 030717 67 TVDIQKGVSLFRQACIGCHDGGGN 90 (172)
Q Consensus 67 ~~d~~~G~~lf~~~C~~CHg~~g~ 90 (172)
..++++|++||..+|++||+.++.
T Consensus 86 ~~~va~G~eLF~~NCAaCHG~dGk 109 (494)
T 1jmx_A 86 LNTVEQFDTQLSETCGRCHSGARV 109 (494)
T ss_dssp TTCCCCCCHHHHHHHSSSSCSHHH
T ss_pred cchhhhHHHHHhhhhhhcCCcccC
Confidence 345778999999999999997654
No 104
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=94.04 E-value=0.17 Score=41.72 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=14.9
Q ss_pred CC-HHHHHHHHHHHHhhhh
Q 030717 144 LQ-DEDIKLLAQFVKSQAD 161 (172)
Q Consensus 144 Ls-d~ei~~VaaYl~~~~~ 161 (172)
++ ++++.+|++|++++..
T Consensus 133 ~~~~~~~~Aia~y~~tl~~ 151 (308)
T 1iqc_A 133 VTIDRITTAIAQFEETLVT 151 (308)
T ss_dssp CCHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHhhhCC
Confidence 44 8899999999998753
No 105
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=93.39 E-value=0.11 Score=43.57 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=15.4
Q ss_pred CCC-HHHHHHHHHHHHhhhh
Q 030717 143 RLQ-DEDIKLLAQFVKSQAD 161 (172)
Q Consensus 143 ~Ls-d~ei~~VaaYl~~~~~ 161 (172)
.++ ++++.+|++|++++..
T Consensus 160 ~it~~~~~~Aia~y~~sL~~ 179 (338)
T 2c1v_A 160 PVTFDNFAAAIEQFEATLIT 179 (338)
T ss_dssp CSCHHHHHHHHHHHHHTCCC
T ss_pred CcCHHHHHHHHHHHHHHhcC
Confidence 455 7788999999998864
No 106
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=92.45 E-value=0.13 Score=42.72 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=15.2
Q ss_pred CCCC-HHHHHHHHHHHHhhhh
Q 030717 142 ARLQ-DEDIKLLAQFVKSQAD 161 (172)
Q Consensus 142 ~~Ls-d~ei~~VaaYl~~~~~ 161 (172)
..+| ++++.+|++|++++..
T Consensus 145 ~~it~~~~~~Aia~y~~sl~~ 165 (323)
T 2vhd_A 145 KPVSFDNMALAIEAYEATLVT 165 (323)
T ss_dssp SCSSHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHhhcCC
Confidence 3567 5557999999998754
No 107
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=91.70 E-value=0.26 Score=36.53 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHccCccccCCCCCCCCCCCCccchhhhcCCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030717 75 SLFRQACIGCHDGGGNVIQPGATLFLKDLQRNGVDTEDEIYHVTYFGKGRMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ 154 (172)
Q Consensus 75 ~lf~~~C~~CHg~~g~~~~~~~~~~~p~l~~~~~~~~~~l~~~i~~g~~~MP~~~~~~~~~~~~~~~~~Lsd~ei~~Vaa 154 (172)
..|...|++||-.- .|.| -..+.+.+++.+-.+. |+ -...|++++...|.+
T Consensus 13 ~~Y~~eCgsCH~Ay-----------pP~l-----LPa~SW~~im~~L~~H---FG----------~dasLd~~~~~~I~~ 63 (148)
T 3u99_A 13 AEYTAECGSCHMAY-----------PANL-----LPADKWRAITANLENH---FG----------DNASLDPQVTARIEE 63 (148)
T ss_dssp HHHHHHHSSSSCCC-----------CGGG-----SBHHHHHHHHTTTTSB---TT----------BCCCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCccc-----------Cccc-----CCHHHHHHHHHhHHHh---cC----------CCcCCCHHHHHHHHH
Confidence 35888999999621 1222 1466667766432222 22 125799999999999
Q ss_pred HHHhhh
Q 030717 155 FVKSQA 160 (172)
Q Consensus 155 Yl~~~~ 160 (172)
||...+
T Consensus 64 yL~~na 69 (148)
T 3u99_A 64 YLVQHA 69 (148)
T ss_dssp HHHHTS
T ss_pred HHHHcc
Confidence 998765
No 108
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=89.81 E-value=0.84 Score=37.85 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=14.7
Q ss_pred CCCHHHH-HHHHHHHHhhh
Q 030717 143 RLQDEDI-KLLAQFVKSQA 160 (172)
Q Consensus 143 ~Lsd~ei-~~VaaYl~~~~ 160 (172)
.++.++| ++|++|++++.
T Consensus 140 ~it~~~i~~Aiaaf~rtL~ 158 (320)
T 3o5c_A 140 KVDIDRLTDAIAAFEKTLV 158 (320)
T ss_dssp CCCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 4777887 89999999874
No 109
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=86.22 E-value=0.3 Score=40.53 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=14.7
Q ss_pred CCC-HHHHHHHHHHHHhhhh
Q 030717 143 RLQ-DEDIKLLAQFVKSQAD 161 (172)
Q Consensus 143 ~Ls-d~ei~~VaaYl~~~~~ 161 (172)
.++ ++++.+|++|++++..
T Consensus 149 ~i~~~~~~~Aiaay~~sl~~ 168 (328)
T 1zzh_A 149 PISFDNFALAVEAFEATLIT 168 (328)
T ss_dssp CCCHHHHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHHHcCC
Confidence 344 6778999999998753
No 110
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=80.69 E-value=0.25 Score=41.35 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=15.7
Q ss_pred hhhHHhHHHHHH---------ccCccccC
Q 030717 67 TVDIQKGVSLFR---------QACIGCHD 86 (172)
Q Consensus 67 ~~d~~~G~~lf~---------~~C~~CHg 86 (172)
.+.++-|+.||. ..|++||.
T Consensus 45 ~~kv~LGr~LFfD~~LS~~~~~SCASCH~ 73 (341)
T 4aan_A 45 PSRVELGRMLFFDPRLSASHLISCNTCHN 73 (341)
T ss_dssp HHHHHHHHHHHHCGGGSTTSCCCHHHHSB
T ss_pred HHHHHHHHHHhcCcccCCCcCCCccccCC
Confidence 345788999992 46999995
No 111
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=80.64 E-value=0.77 Score=38.50 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=15.5
Q ss_pred CCCCHHHHH-HHHHHHHhhh
Q 030717 142 ARLQDEDIK-LLAQFVKSQA 160 (172)
Q Consensus 142 ~~Lsd~ei~-~VaaYl~~~~ 160 (172)
..+|.++|. +|++|++++.
T Consensus 167 ~~it~~~i~~AIAafertL~ 186 (345)
T 3hq9_A 167 DPVTFDNMAKAIEVFEATLI 186 (345)
T ss_dssp SCCCHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHhcC
Confidence 348999986 9999999874
No 112
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=80.24 E-value=0.77 Score=38.01 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=16.7
Q ss_pred hhhHHhHHHHHHc---------cCccccCC
Q 030717 67 TVDIQKGVSLFRQ---------ACIGCHDG 87 (172)
Q Consensus 67 ~~d~~~G~~lf~~---------~C~~CHg~ 87 (172)
...++.|++||.. .|++||..
T Consensus 28 ~~~v~lGk~LF~D~~LS~~~~~sCasCH~~ 57 (326)
T 1nml_A 28 QAKVELGKMEFFEPRLSSSHLISCNTCHNV 57 (326)
T ss_dssp HHHHHHHHHHHTCGGGSTTSCCCHHHHSCT
T ss_pred HHHHHHHHHHhcCcccccCCCccchhcCCc
Confidence 3458899999943 69999985
No 113
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=72.14 E-value=0.41 Score=41.82 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.0
Q ss_pred hHHhHHHHHHccCccccC
Q 030717 69 DIQKGVSLFRQACIGCHD 86 (172)
Q Consensus 69 d~~~G~~lf~~~C~~CHg 86 (172)
+...|.++|..+|+.||.
T Consensus 88 ~~~~ggelfr~nCA~CHn 105 (489)
T 1pby_A 88 WDEGPDTSMTQTCGRCHS 105 (489)
T ss_dssp CCCCSSHHHHHHHSSSSC
T ss_pred cccCchhhHHhhHhhhCC
Confidence 455678899899999997
No 114
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=67.52 E-value=1.3 Score=37.40 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=16.2
Q ss_pred hhhHHhHHHHHH---------ccCccccCC
Q 030717 67 TVDIQKGVSLFR---------QACIGCHDG 87 (172)
Q Consensus 67 ~~d~~~G~~lf~---------~~C~~CHg~ 87 (172)
.+-++-|++||- ..|++||..
T Consensus 8 ~~kv~LGk~LFfD~rLS~~~~iSCaSCH~p 37 (373)
T 3sjl_A 8 DALAALGAQLFVDPALSRNATQSCATCHDP 37 (373)
T ss_dssp HHHHHHHHHHHTCGGGSTTSCCCHHHHSBG
T ss_pred HHHHHHHHHHhCCCccCCCCCcCchhhCCc
Confidence 345788999992 479999974
No 115
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=59.13 E-value=3.1 Score=29.67 Aligned_cols=12 Identities=33% Similarity=0.960 Sum_probs=9.2
Q ss_pred HccCccccCCCC
Q 030717 78 RQACIGCHDGGG 89 (172)
Q Consensus 78 ~~~C~~CHg~~g 89 (172)
..+|.+||..++
T Consensus 102 ~~~C~~CH~~~~ 113 (134)
T 3b47_A 102 EVRCQSCHEQGA 113 (134)
T ss_dssp CTTGGGTSCTTC
T ss_pred CCCchhhhCCCC
Confidence 468999998643
No 116
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=58.24 E-value=3.5 Score=29.25 Aligned_cols=10 Identities=50% Similarity=1.172 Sum_probs=8.3
Q ss_pred HccCccccCC
Q 030717 78 RQACIGCHDG 87 (172)
Q Consensus 78 ~~~C~~CHg~ 87 (172)
..+|..||..
T Consensus 103 ~~~Cl~CH~~ 112 (135)
T 3b42_A 103 EQRCQSCHDA 112 (135)
T ss_dssp CGGGGGTSCT
T ss_pred CcChHhhcCC
Confidence 4789999965
No 117
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=49.47 E-value=14 Score=25.85 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=7.8
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 110 ~~sCkaCH~ 118 (125)
T 1mqv_A 110 LGNCKSCHD 118 (125)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 578999995
No 118
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=45.84 E-value=6.8 Score=27.62 Aligned_cols=9 Identities=67% Similarity=1.427 Sum_probs=7.7
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 116 ~~sCkaCH~ 124 (129)
T 2j8w_A 116 GGACKGCHD 124 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999995
No 119
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=44.92 E-value=17 Score=25.57 Aligned_cols=9 Identities=44% Similarity=1.132 Sum_probs=7.8
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 116 ~~sCkaCH~ 124 (130)
T 1gqa_A 116 GGTCKSCHD 124 (130)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 578999995
No 120
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=44.19 E-value=19 Score=25.59 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=7.6
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
...|.+||.
T Consensus 118 g~tCkaCH~ 126 (131)
T 3vrc_A 118 GAACKACHQ 126 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999994
No 121
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=43.98 E-value=7 Score=27.47 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=7.7
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 113 ~~sCkaCH~ 121 (127)
T 2ykz_A 113 GASCKACHD 121 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999995
No 122
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=43.79 E-value=7.2 Score=27.56 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=7.7
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 115 ~~~CkaCH~ 123 (129)
T 1cpq_A 115 GGTCKACHD 123 (129)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 578999995
No 123
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=41.01 E-value=28 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
|-|-..|||+||..=+.|+.++
T Consensus 14 fSyLP~lt~eqI~kQI~Yll~q 35 (109)
T 1rbl_M 14 FSYLPPLSDRQIAAQIEYMIEQ 35 (109)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4455789999999999999987
No 124
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=39.95 E-value=31 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=18.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
|-|-..||++||..=+.|+.++
T Consensus 16 fSyLP~lt~eqI~kQV~Yll~q 37 (110)
T 1svd_M 16 FSYLPPMNAERIRAQIKYAIAQ 37 (110)
T ss_dssp TTTSCCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4455789999999999999887
No 125
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=39.75 E-value=30 Score=24.75 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh
Q 030717 138 CTFGARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 138 ~~~~~~Lsd~ei~~VaaYl~~~ 159 (172)
|-|-..|||+||..=+.||.++
T Consensus 15 fSyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 15 LSYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 4455789999999999999987
No 126
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=37.94 E-value=24 Score=25.38 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=9.9
Q ss_pred HccCccccCCCCC
Q 030717 78 RQACIGCHDGGGN 90 (172)
Q Consensus 78 ~~~C~~CHg~~g~ 90 (172)
.+.|.+||.....
T Consensus 55 ~N~ClsCH~~~~a 67 (130)
T 1ogy_B 55 ANRCLECHRRQYS 67 (130)
T ss_dssp CBGGGGTSCCCCT
T ss_pred CCcCcccCCcccc
Confidence 4689999986643
No 127
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=36.76 E-value=25 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030717 142 ARLQDEDIKLLAQFVKS 158 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~ 158 (172)
.+||++|+..|+..|..
T Consensus 37 r~Ltdeev~~Va~~L~~ 53 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMR 53 (103)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 67999999999999963
No 128
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=36.14 E-value=10 Score=26.70 Aligned_cols=9 Identities=33% Similarity=1.136 Sum_probs=7.7
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 115 ~~~CkaCH~ 123 (128)
T 2ccy_A 115 GKVCKACHE 123 (128)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 578999995
No 129
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=35.84 E-value=27 Score=24.45 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030717 142 ARLQDEDIKLLAQFVKS 158 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~ 158 (172)
.+||++|+..|+..|..
T Consensus 39 r~Ltdeev~~Va~~L~~ 55 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEK 55 (112)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 67999999999999963
No 130
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=34.45 E-value=36 Score=23.96 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 030717 141 GARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 141 ~~~Lsd~ei~~VaaYl~~~ 159 (172)
-..||++||..=+.||.++
T Consensus 16 LP~Lt~eqI~kQV~yll~q 34 (118)
T 3zxw_B 16 LPPLSDAQIARQIQYAIDQ 34 (118)
T ss_dssp SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 3679999999999999887
No 131
>2czs_A DHC2, cytochrome C, putative; diheme, C-type cytochrome, electron transport; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=33.40 E-value=23 Score=23.15 Aligned_cols=13 Identities=38% Similarity=1.066 Sum_probs=9.5
Q ss_pred HccCcccc--CCCCC
Q 030717 78 RQACIGCH--DGGGN 90 (172)
Q Consensus 78 ~~~C~~CH--g~~g~ 90 (172)
.+.|.+|| +.+|.
T Consensus 34 E~~C~~CH~~~~~gi 48 (80)
T 2czs_A 34 DRQCVECHHEKPGGI 48 (80)
T ss_dssp HHHHTTTSCSSSSSC
T ss_pred HhcchhhcccCCCCC
Confidence 56799999 65553
No 132
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=31.65 E-value=18 Score=25.49 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=7.7
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
..+|.+||.
T Consensus 114 ~~~CkaCH~ 122 (129)
T 1s05_A 114 GKACGNCHE 122 (129)
T ss_dssp THHHHHHHH
T ss_pred HhHHHHHHH
Confidence 478999996
No 133
>1ehj_A Cytochrome C7; multi-heme, electron transport; HET: HEC; NMR {Desulfuromonas acetoxidans} SCOP: a.138.1.1 PDB: 1f22_A* 1hh5_A* 1lm2_A* 1new_A* 2new_A* 1kwj_A* 1l3o_A*
Probab=29.23 E-value=12 Score=23.58 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=11.7
Q ss_pred HHHHHH-ccCccccCC
Q 030717 73 GVSLFR-QACIGCHDG 87 (172)
Q Consensus 73 G~~lf~-~~C~~CHg~ 87 (172)
++..|. ..|.+||..
T Consensus 40 ~~~~~h~~~C~~CH~~ 55 (68)
T 1ehj_A 40 DKKSAHKDACKTCHKS 55 (68)
T ss_dssp CHHHHHHHSHHHHGGG
T ss_pred HHHHHhccHHHHHhcc
Confidence 456776 899999964
No 134
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=28.79 E-value=10 Score=29.18 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=9.8
Q ss_pred HccCccccCCCCC
Q 030717 78 RQACIGCHDGGGN 90 (172)
Q Consensus 78 ~~~C~~CHg~~g~ 90 (172)
...|.+||++++.
T Consensus 85 gv~Ce~CHgpg~~ 97 (211)
T 1ft5_A 85 GVGCESCHGPGRN 97 (211)
T ss_dssp SSCHHHHHCCCTT
T ss_pred CCcchhhCCCccc
Confidence 3589999997643
No 135
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=27.53 E-value=46 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=19.3
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHhh
Q 030717 135 RGQCTF-GARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 135 ~~~~~~-~~~Lsd~ei~~VaaYl~~~ 159 (172)
+|...+ ...+++.|++.+-+||...
T Consensus 53 dGl~y~~T~~~s~~eLdk~t~wLD~r 78 (85)
T 2l48_A 53 DGLTYFISKPTSDAQLKAMKEYLDRK 78 (85)
T ss_dssp TSCEEEEECCCCHHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcc
Confidence 344333 5679999999999999874
No 136
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=27.33 E-value=11 Score=23.94 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=10.8
Q ss_pred HHHHHccCccccCC
Q 030717 74 VSLFRQACIGCHDG 87 (172)
Q Consensus 74 ~~lf~~~C~~CHg~ 87 (172)
+.++.+.|.+||..
T Consensus 43 k~~~~~~C~~CH~~ 56 (70)
T 3h34_A 43 KDYAHKTCKGCHEV 56 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhcChhHHHhhh
Confidence 45567889999963
No 137
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=26.99 E-value=15 Score=24.80 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=7.6
Q ss_pred HccCccccC
Q 030717 78 RQACIGCHD 86 (172)
Q Consensus 78 ~~~C~~CHg 86 (172)
...|.+||.
T Consensus 95 ~~~Ck~CH~ 103 (106)
T 3de8_A 95 KTTCNACHQ 103 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999994
No 138
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=26.71 E-value=48 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCC-CCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhh
Q 030717 111 EDEIYHVTYFGKG-RMPGFGEKCTPRGQC-TFGARLQDEDIKLLAQFVKSQA 160 (172)
Q Consensus 111 ~~~l~~~i~~g~~-~MP~~~~~~~~~~~~-~~~~~Lsd~ei~~VaaYl~~~~ 160 (172)
...++.+++-|.. .+|...+. -+. -...+|||+|+..|+..|....
T Consensus 13 l~siv~WLRaGYPeGVP~~Dy~----PLlALL~R~Ltddev~~Va~~L~~~~ 60 (107)
T 3ol3_A 13 MDNVLGWLHKGYPEGVPPKDYF----ALLALLKRSLTEDEVVRAAQAILRST 60 (107)
T ss_dssp HHHHHHHHHHHCTTCBCGGGHH----HHHHHHTCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCCCCCCCCccH----HHHHHhcccCCHHHHHHHHHHHHhcc
Confidence 4556667777754 34443200 000 0026799999999999987653
No 139
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=25.50 E-value=15 Score=19.64 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=7.1
Q ss_pred ccCccccC
Q 030717 79 QACIGCHD 86 (172)
Q Consensus 79 ~~C~~CHg 86 (172)
++|.+||-
T Consensus 15 R~CVaC~L 22 (31)
T 1oqe_K 15 RHCVACGL 22 (31)
T ss_dssp TEEEEGGG
T ss_pred hcceEEEE
Confidence 68999996
No 140
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=24.73 E-value=37 Score=21.98 Aligned_cols=13 Identities=31% Similarity=0.971 Sum_probs=9.1
Q ss_pred HHHH-ccCccccCC
Q 030717 75 SLFR-QACIGCHDG 87 (172)
Q Consensus 75 ~lf~-~~C~~CHg~ 87 (172)
+++. ..|.+||..
T Consensus 53 ~~~~g~~C~~CH~g 66 (82)
T 1rwj_A 53 DMDKGKSCGACHNG 66 (82)
T ss_dssp HHHTTCGGGGTTTT
T ss_pred HHHcCChhHHHhCC
Confidence 3443 689999963
No 141
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=24.38 E-value=18 Score=26.13 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=9.0
Q ss_pred HccCccccCCCCC
Q 030717 78 RQACIGCHDGGGN 90 (172)
Q Consensus 78 ~~~C~~CHg~~g~ 90 (172)
.+.|.+||+....
T Consensus 56 ~N~Cl~CH~~~~a 68 (135)
T 3ml1_B 56 FNRCMFCHARTRT 68 (135)
T ss_dssp EEHHHHHHSCC--
T ss_pred CCcCcccCCcccc
Confidence 4679999986543
No 142
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=23.42 E-value=52 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030717 124 RMPGFGEKCTPRGQCTFGARLQDEDIKLLAQ 154 (172)
Q Consensus 124 ~MP~~~~~~~~~~~~~~~~~Lsd~ei~~Vaa 154 (172)
.-| +..++..++.|-+.++|||++++.|++
T Consensus 188 ~~P-iaSHSnaral~~h~RNl~D~~l~ala~ 217 (318)
T 3neh_A 188 EFV-IASHSNAKAICSHPRNLDDEQIKAMIE 217 (318)
T ss_dssp SSE-EESSCCBTTTSCCTTSBCHHHHHHHHH
T ss_pred CCC-cccccchhhcCCCCCCCCHHHHHHHHH
Confidence 567 888899999999999999999999974
No 143
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=23.13 E-value=16 Score=26.05 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=8.7
Q ss_pred HccCccccCCC
Q 030717 78 RQACIGCHDGG 88 (172)
Q Consensus 78 ~~~C~~CHg~~ 88 (172)
.+.|.+||...
T Consensus 54 ~N~ClsCH~~~ 64 (123)
T 1jni_A 54 VNQCLNCHSPE 64 (123)
T ss_dssp EETTHHHHSTT
T ss_pred CccCcccCCcc
Confidence 36799999854
No 144
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=22.96 E-value=45 Score=24.22 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030717 142 ARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~ 159 (172)
..+|++|+++|++|+.+-
T Consensus 78 ~~fT~~El~~l~~FY~sp 95 (147)
T 3oao_A 78 TNFTESELKDLNAFYQSP 95 (147)
T ss_dssp HHSCHHHHHHHHHHHHSH
T ss_pred HHCCHHHHHHHHHHHCCH
Confidence 679999999999999864
No 145
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=22.37 E-value=15 Score=23.17 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=10.2
Q ss_pred HHHHHccCccccCC
Q 030717 74 VSLFRQACIGCHDG 87 (172)
Q Consensus 74 ~~lf~~~C~~CHg~ 87 (172)
+.++.+.|.+||..
T Consensus 45 ~~~~~~~C~~CH~~ 58 (72)
T 3h4n_A 45 KDWAHKTCTGCHKE 58 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhcChHHHHhCc
Confidence 34556789999963
No 146
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=22.36 E-value=57 Score=22.74 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 030717 142 ARLQDEDIKLLAQFVKSQ 159 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~~ 159 (172)
.+||++|+..|+.-|...
T Consensus 39 R~LtdeEV~~Va~~L~~~ 56 (112)
T 2m0n_A 39 RTLTEEQVQEVVAKLTDP 56 (112)
T ss_dssp SSCCHHHHHHHHHHHTCT
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 679999999999888543
No 147
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=20.12 E-value=63 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHh---hhhCCC
Q 030717 142 ARLQDEDIKLLAQFVKS---QADQGW 164 (172)
Q Consensus 142 ~~Lsd~ei~~VaaYl~~---~~~~gw 164 (172)
+.||++|+..|.++|.+ ...+.|
T Consensus 59 g~Lt~~ei~~l~~~i~~~~~~~iP~w 84 (146)
T 3u5c_S 59 GELTQEELERIVQIMQNPTHYKIPAW 84 (146)
T ss_dssp SSCCHHHHHHHHHHHTCTTTTTCCST
T ss_pred ccCCHHHHHHHHHHHHhhcccCccHH
Confidence 57999999999999975 345666
Done!