Your job contains 1 sequence.
>030718
MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW
IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG
SLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030718
(172 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064864 - symbol:AT2G40780 species:3702 "Arabi... 443 8.4e-42 1
DICTYBASE|DDB_G0292138 - symbol:DDB_G0292138 "Probable RN... 200 4.7e-16 1
UNIPROTKB|Q58CY2 - symbol:EIF1AD "Probable RNA-binding pr... 189 6.9e-15 1
UNIPROTKB|J9NXA5 - symbol:EIF1AD "Uncharacterized protein... 182 3.8e-14 1
MGI|MGI:1917110 - symbol:Eif1ad "eukaryotic translation i... 182 3.8e-14 1
RGD|1304686 - symbol:Eif1ad "eukaryotic translation initi... 182 3.8e-14 1
ZFIN|ZDB-GENE-040426-1199 - symbol:eif1ad "eukaryotic tra... 181 4.9e-14 1
UNIPROTKB|E9PRR8 - symbol:EIF1AD "Probable RNA-binding pr... 179 7.9e-14 1
UNIPROTKB|Q8N9N8 - symbol:EIF1AD "Probable RNA-binding pr... 179 7.9e-14 1
UNIPROTKB|E9PLI6 - symbol:EIF1AD "Probable RNA-binding pr... 176 1.6e-13 1
UNIPROTKB|E9PS76 - symbol:EIF1AD "Probable RNA-binding pr... 176 1.6e-13 1
UNIPROTKB|F1RU32 - symbol:LOC100623051 "Uncharacterized p... 176 1.6e-13 1
FB|FBgn0051957 - symbol:CG31957 species:7227 "Drosophila ... 172 4.4e-13 1
UNIPROTKB|Q6K1L7 - symbol:eif1ad "Probable RNA-binding pr... 152 5.8e-11 1
UNIPROTKB|Q29MZ0 - symbol:GA16587 "Probable RNA-binding p... 151 7.4e-11 1
WB|WBGene00014112 - symbol:ZK856.11 species:6239 "Caenorh... 136 2.9e-09 1
ASPGD|ASPL0000052694 - symbol:AN0105 species:162425 "Emer... 135 3.6e-09 1
UNIPROTKB|E9PNH5 - symbol:EIF1AD "Probable RNA-binding pr... 130 1.2e-08 1
UNIPROTKB|E9PS30 - symbol:EIF1AD "Probable RNA-binding pr... 125 4.2e-08 1
POMBASE|SPBC146.08c - symbol:SPBC146.08c "translation ini... 124 5.3e-08 1
TAIR|locus:2058470 - symbol:AT2G40910 "AT2G40910" species... 119 1.6e-06 1
ASPGD|ASPL0000074179 - symbol:AN8712 species:162425 "Emer... 99 0.00012 1
>TAIR|locus:2064864 [details] [associations]
symbol:AT2G40780 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
SMART:SM00652 EMBL:CP002685 GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 UniGene:At.53090 KO:K15025
OMA:GESIMQV IPI:IPI00524954 RefSeq:NP_181610.1
ProteinModelPortal:F4II37 SMR:F4II37 PRIDE:F4II37
EnsemblPlants:AT2G40780.1 GeneID:818675 KEGG:ath:AT2G40780
Uniprot:F4II37
Length = 171
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 91/155 (58%), Positives = 111/155 (71%)
Query: 1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
M GR+NLK+AA +Q TL++ QSI QVVSLRGSN IE++DAK E SLALFPAKF++SMW
Sbjct: 1 MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60
Query: 61 IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
I+RGSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A
Sbjct: 61 IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120
Query: 121 SLERQACNHXXXXXXXXXXXXGLPPLEANINRMKP 155
S + + G+PPL+AN NR++P
Sbjct: 121 SSPIEQ-HEDDGEVDSSDDDDGMPPLQANTNRLRP 154
>DICTYBASE|DDB_G0292138 [details] [associations]
symbol:DDB_G0292138 "Probable RNA-binding protein
EIF1AD" species:44689 "Dictyostelium discoideum" [GO:0006413
"translational initiation" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
dictyBase:DDB_G0292138 EMBL:AAFI02000187 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:NOG316136 KO:K15025 RefSeq:XP_629853.1
ProteinModelPortal:Q54DL9 EnsemblProtists:DDB0184249 GeneID:8628534
KEGG:ddi:DDB_G0292138 InParanoid:Q54DL9 OMA:GESIMQV
ProtClustDB:CLSZ2429487 Uniprot:Q54DL9
Length = 183
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 49/154 (31%), Positives = 78/154 (50%)
Query: 1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
M RK++ + SL L++ Q+I++V+ +RG N++EV LA+ P+KF+ +W
Sbjct: 1 MSHARKHVTNQSLNSSLKLENDQNIVKVIDMRGGNVVEVQYPNGSTVLAIIPSKFKNILW 60
Query: 61 IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
IK+G++ ++D KE S+V C V +L E V+ L KS +WP+ F + +D N
Sbjct: 61 IKKGNYAIID---KEDESSKSSQVKCSVVHILSKENVKGLVKSRDWPKEF---DLEDKNQ 114
Query: 121 SLERQACNHXXXXXXXXXXXXGLPPLEANINRMK 154
+ Q GL L N NR K
Sbjct: 115 RQQPQK-PLLLTAPTSDDEDGGLSDLGVNPNRKK 147
>UNIPROTKB|Q58CY2 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
SMART:SM00652 GO:GO:0005634 GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:BT021815 EMBL:BC120113
EMBL:DQ404153 IPI:IPI00710577 RefSeq:NP_001069861.1 UniGene:Bt.1633
ProteinModelPortal:Q58CY2 SMR:Q58CY2 PRIDE:Q58CY2
Ensembl:ENSBTAT00000026889 GeneID:615726 KEGG:bta:615726 CTD:84285
eggNOG:NOG316136 GeneTree:ENSGT00390000011180 HOGENOM:HOG000007486
HOVERGEN:HBG097893 InParanoid:Q58CY2 KO:K15025 OMA:AEPQLSG
OrthoDB:EOG44QT26 NextBio:20899760 Uniprot:Q58CY2
Length = 166
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 43/121 (35%), Positives = 68/121 (56%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL + VR+LQK WPE F D N R
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKD-NNDRNR 119
Query: 125 Q 125
Q
Sbjct: 120 Q 120
>UNIPROTKB|J9NXA5 [details] [associations]
symbol:EIF1AD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003743 "translation initiation factor
activity" evidence=IEA] InterPro:IPR001253 InterPro:IPR006196
Pfam:PF01176 PROSITE:PS50832 SMART:SM00652 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 CTD:84285
GeneTree:ENSGT00390000011180 KO:K15025 OMA:AEPQLSG
EMBL:AAEX03011631 RefSeq:XP_533226.1 ProteinModelPortal:J9NXA5
Ensembl:ENSCAFT00000044182 GeneID:476017 KEGG:cfa:476017
Uniprot:J9NXA5
Length = 166
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 42/121 (34%), Positives = 70/121 (57%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL + VR+LQK WPE F ++ N + R
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAFSEV-AEKHNNNRNR 119
Query: 125 Q 125
Q
Sbjct: 120 Q 120
>MGI|MGI:1917110 [details] [associations]
symbol:Eif1ad "eukaryotic translation initiation factor 1A
domain containing" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001253
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 SMART:SM00652
MGI:MGI:1917110 GO:GO:0005634 GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:84285 eggNOG:NOG316136
GeneTree:ENSGT00390000011180 HOGENOM:HOG000007486
HOVERGEN:HBG097893 KO:K15025 OMA:AEPQLSG OrthoDB:EOG44QT26
EMBL:AK008070 EMBL:AK153194 EMBL:AK158977 EMBL:AK168598
EMBL:AK168102 EMBL:AK168253 EMBL:BC024640 IPI:IPI00169734
RefSeq:NP_081512.1 UniGene:Mm.299167 ProteinModelPortal:Q3THJ3
SMR:Q3THJ3 PhosphoSite:Q3THJ3 PaxDb:Q3THJ3 PRIDE:Q3THJ3
Ensembl:ENSMUST00000025759 GeneID:69860 KEGG:mmu:69860
UCSC:uc008gct.1 InParanoid:Q3THJ3 NextBio:330481 Bgee:Q3THJ3
Genevestigator:Q3THJ3 Uniprot:Q3THJ3
Length = 170
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL VR+LQK WPE F N + E
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRES 120
Query: 125 Q 125
Q
Sbjct: 121 Q 121
>RGD|1304686 [details] [associations]
symbol:Eif1ad "eukaryotic translation initiation factor 1A
domain containing" species:10116 "Rattus norvegicus" [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001253 InterPro:IPR006196
Pfam:PF01176 PROSITE:PS50832 SMART:SM00652 RGD:1304686
GO:GO:0005634 GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 CTD:84285 eggNOG:NOG316136
GeneTree:ENSGT00390000011180 HOGENOM:HOG000007486
HOVERGEN:HBG097893 KO:K15025 OMA:AEPQLSG OrthoDB:EOG44QT26
EMBL:BC085818 IPI:IPI00371430 RefSeq:NP_001008306.1 UniGene:Rn.4163
ProteinModelPortal:Q5RKI6 SMR:Q5RKI6 Ensembl:ENSRNOT00000027753
GeneID:293673 KEGG:rno:293673 InParanoid:Q5RKI6 NextBio:636704
Genevestigator:Q5RKI6 Uniprot:Q5RKI6
Length = 167
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVQEVLGEHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL VR+LQK WPE F N + E
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNVNRES 120
Query: 125 Q 125
Q
Sbjct: 121 Q 121
>ZFIN|ZDB-GENE-040426-1199 [details] [associations]
symbol:eif1ad "eukaryotic translation initiation
factor 1A domain containing" species:7955 "Danio rerio" [GO:0006413
"translational initiation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
ZFIN:ZDB-GENE-040426-1199 GO:GO:0005634 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 CTD:84285
eggNOG:NOG316136 HOGENOM:HOG000007486 HOVERGEN:HBG097893 KO:K15025
OrthoDB:EOG44QT26 EMBL:BC055173 IPI:IPI00481524 RefSeq:NP_956762.1
UniGene:Dr.95613 ProteinModelPortal:Q7SY07 SMR:Q7SY07 PRIDE:Q7SY07
GeneID:393440 KEGG:dre:393440 InParanoid:Q7SY07 NextBio:20814477
Uniprot:Q7SY07
Length = 172
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 41/122 (33%), Positives = 69/122 (56%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + E +T + Q IM+V+ G+NL E + E+ L P KF+K++WIKRG
Sbjct: 7 RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTN-SDDANGSLE 123
FV+VD IK+G KV ++ +L+ + ++ L+K WPE F+ S + N +
Sbjct: 67 DFVIVDP------IKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQ 120
Query: 124 RQ 125
++
Sbjct: 121 KE 122
>UNIPROTKB|E9PRR8 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR001253
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 SMART:SM00652
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP006287 HGNC:HGNC:28147 IPI:IPI00980832
ProteinModelPortal:E9PRR8 SMR:E9PRR8 Ensembl:ENST00000529964
ArrayExpress:E9PRR8 Bgee:E9PRR8 Uniprot:E9PRR8
Length = 146
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 41/121 (33%), Positives = 68/121 (56%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL + VR+LQK WPE F N + +
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT 120
Query: 125 Q 125
Q
Sbjct: 121 Q 121
>UNIPROTKB|Q8N9N8 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
SMART:SM00652 GO:GO:0005634 EMBL:CH471076 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 CTD:84285
eggNOG:NOG316136 HOGENOM:HOG000007486 HOVERGEN:HBG097893 KO:K15025
OMA:AEPQLSG OrthoDB:EOG44QT26 EMBL:AK094129 EMBL:AK311891
EMBL:BC005131 IPI:IPI00298618 RefSeq:NP_001229410.1
RefSeq:NP_001229411.1 RefSeq:NP_001229412.1 RefSeq:NP_001229413.1
RefSeq:NP_001229414.1 RefSeq:NP_001229415.1 RefSeq:NP_115701.2
UniGene:Hs.425178 PDB:2DGY PDBsum:2DGY ProteinModelPortal:Q8N9N8
SMR:Q8N9N8 IntAct:Q8N9N8 MINT:MINT-1479911 STRING:Q8N9N8
PhosphoSite:Q8N9N8 DMDM:74729733 PaxDb:Q8N9N8 PeptideAtlas:Q8N9N8
PRIDE:Q8N9N8 DNASU:84285 Ensembl:ENST00000312234
Ensembl:ENST00000526451 Ensembl:ENST00000527249
Ensembl:ENST00000533544 GeneID:84285 KEGG:hsa:84285 UCSC:uc001ogm.2
GeneCards:GC11M065764 HGNC:HGNC:28147 neXtProt:NX_Q8N9N8
PharmGKB:PA162384553 InParanoid:Q8N9N8 PhylomeDB:Q8N9N8
EvolutionaryTrace:Q8N9N8 GenomeRNAi:84285 NextBio:73898
ArrayExpress:Q8N9N8 Bgee:Q8N9N8 CleanEx:HS_EIF1AD
Genevestigator:Q8N9N8 Uniprot:Q8N9N8
Length = 165
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 41/121 (33%), Positives = 68/121 (56%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL + VR+LQK WPE F N + +
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT 120
Query: 125 Q 125
Q
Sbjct: 121 Q 121
>UNIPROTKB|E9PLI6 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR001253
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 SMART:SM00652
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP006287 HGNC:HGNC:28147 IPI:IPI00978664
ProteinModelPortal:E9PLI6 SMR:E9PLI6 Ensembl:ENST00000532707
ArrayExpress:E9PLI6 Bgee:E9PLI6 Uniprot:E9PLI6
Length = 113
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106
>UNIPROTKB|E9PS76 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR001253
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 SMART:SM00652
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP006287 HGNC:HGNC:28147 IPI:IPI00981348
ProteinModelPortal:E9PS76 SMR:E9PS76 Ensembl:ENST00000530462
ArrayExpress:E9PS76 Bgee:E9PS76 Uniprot:E9PS76
Length = 114
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106
>UNIPROTKB|F1RU32 [details] [associations]
symbol:LOC100623051 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176
PROSITE:PS50832 SMART:SM00652 GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000011180
KO:K15025 OMA:AEPQLSG EMBL:CU928325 EMBL:CU694743
RefSeq:XP_003122556.1 RefSeq:XP_003122557.1 RefSeq:XP_003353821.1
RefSeq:XP_003353822.1 UniGene:Ssc.51901 Ensembl:ENSSSCT00000014168
Ensembl:ENSSSCT00000023081 GeneID:100522537 GeneID:100623051
KEGG:ssc:100522537 KEGG:ssc:100623051 Uniprot:F1RU32
Length = 166
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 42/122 (34%), Positives = 67/122 (54%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ + L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST-NSDDANGSLE 123
F++VD I++G KV ++ VL VRALQK WP+ F D N + +
Sbjct: 67 DFLIVDP------IEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 120
Query: 124 RQ 125
Q
Sbjct: 121 TQ 122
>FB|FBgn0051957 [details] [associations]
symbol:CG31957 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR006196
Pfam:PF01176 PROSITE:PS50832 EMBL:AE014134 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:NOG316136 GeneTree:ENSGT00390000011180 KO:K15025 OMA:AEPQLSG
EMBL:BT025911 RefSeq:NP_722949.1 UniGene:Dm.18349
ProteinModelPortal:Q8IQ13 SMR:Q8IQ13 MINT:MINT-283849 PRIDE:Q8IQ13
EnsemblMetazoa:FBtr0077514 GeneID:319046 KEGG:dme:Dmel_CG31957
UCSC:CG31957-RA FlyBase:FBgn0051957 InParanoid:Q8IQ13
OrthoDB:EOG45X6CM PhylomeDB:Q8IQ13 ChiTaRS:CG31957
GenomeRNAi:319046 NextBio:847066 Bgee:Q8IQ13 Uniprot:Q8IQ13
Length = 159
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 41/107 (38%), Positives = 61/107 (57%)
Query: 5 RKNLKRAAEEQSLTLQ-DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKR 63
RK+L + E L + Q I +V+S RG+NL EV + DE L P KF+KSMW+KR
Sbjct: 11 RKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEV-ETVDETFLVSMPNKFRKSMWVKR 69
Query: 64 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
G F++V+ I++G KV + K+L E ++ K+ WP+ F
Sbjct: 70 GDFLLVEP------IEEGDKVKAEICKILTPEHIKEYTKAAIWPDKF 110
>UNIPROTKB|Q6K1L7 [details] [associations]
symbol:eif1ad "Probable RNA-binding protein EIF1AD"
species:9031 "Gallus gallus" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 GO:GO:0005634
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
CTD:84285 HOVERGEN:HBG097893 KO:K15025 EMBL:AY103477
IPI:IPI00584105 RefSeq:NP_001001612.1 UniGene:Gga.1097
ProteinModelPortal:Q6K1L7 SMR:Q6K1L7 GeneID:414740 KEGG:gga:414740
NextBio:20818710 Uniprot:Q6K1L7
Length = 188
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 38/109 (34%), Positives = 59/109 (54%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ R E+ + Q I++V+ G+NL EV A + LA P +F+ +WIKRG
Sbjct: 7 RKHVTREVLEEHVVPAPQQRIVRVLGSPGNNLHEVETADGSRFLASMPPRFRHHVWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST 113
F++VD I++G+KV + VL VR LQ+ WP F ++
Sbjct: 67 DFLLVDP------IEEGAKVKAEMALVLLRPHVRFLQRQGLWPTAFAAS 109
>UNIPROTKB|Q29MZ0 [details] [associations]
symbol:GA16587 "Probable RNA-binding protein EIF1AD"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH379060
eggNOG:NOG316136 KO:K15025 OMA:AEPQLSG OrthoDB:EOG45X6CM
RefSeq:XP_001356489.1 ProteinModelPortal:Q29MZ0 SMR:Q29MZ0
GeneID:4817283 KEGG:dpo:Dpse_GA16587 FlyBase:FBgn0076602
InParanoid:Q29MZ0 Uniprot:Q29MZ0
Length = 163
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 40/117 (34%), Positives = 63/117 (53%)
Query: 5 RKNLKRAAEEQSLTLQ-DGQSIMQVVSLRGSNLIEVLDA--KDEKSLALFPAKFQKSMWI 61
RK+L + E L + Q I++VV G+NL EV A + E L P K++K+MW+
Sbjct: 11 RKHLIKEMMEDDYELPTEQQQIVRVVRSCGNNLHEVETATPESENFLVSMPNKYRKNMWV 70
Query: 62 KRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDA 118
KRG F++V+ I++G KV ++K+L + V+ K+ WPE F +A
Sbjct: 71 KRGDFLLVEP------IEEGDKVKAEISKILTNDHVKEYTKAGIWPERFAKNPPQEA 121
>WB|WBGene00014112 [details] [associations]
symbol:ZK856.11 species:6239 "Caenorhabditis elegans"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176
PROSITE:PS50832 SMART:SM00652 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:Z70783 eggNOG:NOG316136 GeneTree:ENSGT00390000011180
HOGENOM:HOG000007486 KO:K15025 OMA:AEPQLSG PIR:T28050
RefSeq:NP_505624.1 ProteinModelPortal:Q23646 SMR:Q23646
DIP:DIP-27289N IntAct:Q23646 MINT:MINT-1052817 STRING:Q23646
PaxDb:Q23646 EnsemblMetazoa:ZK856.11 GeneID:179417
KEGG:cel:CELE_ZK856.11 UCSC:ZK856.11 CTD:179417 WormBase:ZK856.11
InParanoid:Q23646 NextBio:905298 Uniprot:Q23646
Length = 175
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 19 LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAI 78
L D I QV RG+NL EVLD + + P KF+KS+W++R FVVV + I
Sbjct: 21 LVDEDIIAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWLRRDQFVVV------RPI 74
Query: 79 KDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111
+G KV + +L + V +++ +WP F+
Sbjct: 75 TEGDKVKGEIEYILDQDNVLYIRELGKWPTCFE 107
>ASPGD|ASPL0000052694 [details] [associations]
symbol:AN0105 species:162425 "Emericella nidulans"
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 EMBL:BN001308
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AACD01000004 eggNOG:NOG316136 KO:K15025 HOGENOM:HOG000176180
OMA:RFRNTIW OrthoDB:EOG4ZPJ4R RefSeq:XP_657709.1
ProteinModelPortal:Q5BH75 EnsemblFungi:CADANIAT00002644
GeneID:2875884 KEGG:ani:AN0105.2 Uniprot:Q5BH75
Length = 135
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/123 (33%), Positives = 60/123 (48%)
Query: 5 RKNLKRAAEEQSLT---LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWI 61
R+ + AEE L GQ I +V+ G+N+ V + +L PAKF+ ++W+
Sbjct: 5 RRKVLATAEETMFPPDELAQGQEIARVIKATGNNIYSVQFPSKKTALVELPAKFRSTIWM 64
Query: 62 KRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKS---TNSDDA 118
KRGSFVVVD + E +D IV V +A +K+ WP+ F SDD
Sbjct: 65 KRGSFVVVDTNALET--RDNKLEGEIVNIV---RDEKAWRKTHYWPKEFVKQPVVASDDE 119
Query: 119 NGS 121
+ S
Sbjct: 120 DES 122
>UNIPROTKB|E9PNH5 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR006196 Pfam:PF01176
PROSITE:PS50832 GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AP006287 HGNC:HGNC:28147 IPI:IPI00980002
ProteinModelPortal:E9PNH5 SMR:E9PNH5 Ensembl:ENST00000525767
ArrayExpress:E9PNH5 Bgee:E9PNH5 Uniprot:E9PNH5
Length = 113
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 52 PAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111
P+K++K++WIKRG F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 2 PSKYRKNIWIKRGDFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFS 55
Query: 112 STNSDDANGSLERQ 125
N + + Q
Sbjct: 56 EVAEKHNNRNRQTQ 69
>UNIPROTKB|E9PS30 [details] [associations]
symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR006196 Pfam:PF01176
PROSITE:PS50832 GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AP006287 HGNC:HGNC:28147 IPI:IPI00976744
ProteinModelPortal:E9PS30 SMR:E9PS30 Ensembl:ENST00000527051
ArrayExpress:E9PS30 Bgee:E9PS30 Uniprot:E9PS30
Length = 78
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVD--ESGK 74
F++VD E G+
Sbjct: 67 DFLIVDPIEEGE 78
>POMBASE|SPBC146.08c [details] [associations]
symbol:SPBC146.08c "translation initiation factor
eIF1A-like (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0002183 "cytoplasmic translational initiation" evidence=NAS]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176
PROSITE:PS01262 PROSITE:PS50832 SMART:SM00652 PomBase:SPBC146.08c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329671 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0002183
eggNOG:NOG316136 KO:K15025 PIR:T39422 RefSeq:NP_595397.1
ProteinModelPortal:Q9Y803 EnsemblFungi:SPBC146.08c.1 GeneID:2539677
KEGG:spo:SPBC146.08c HOGENOM:HOG000176180 OMA:RFRNTIW
OrthoDB:EOG4ZPJ4R NextBio:20800831 Uniprot:Q9Y803
Length = 127
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 19 LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAI 78
L+ Q + +VV L+GS L V++ ++ L P K++ +W++R FV+VD+S E
Sbjct: 17 LEKDQVVAKVVQLKGSALFMVVENNGQELLVEMPPKYRNKIWVRRNGFVIVDKS--EFLE 74
Query: 79 KDGSKVACIVTKVLFYEQVRALQKSTEWPEIF--KSTNSDDANGS 121
KD +K+ + V+ ++ +K WP+ F +S N +D+ S
Sbjct: 75 KD-NKIDGTILYVV-QSPLKNWKKQIYWPKEFADESLNQNDSEES 117
>TAIR|locus:2058470 [details] [associations]
symbol:AT2G40910 "AT2G40910" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001810 PROSITE:PS50181 SMART:SM00256
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF81383
EMBL:AC002409 InterPro:IPR017451 TIGRFAMs:TIGR01640
InterPro:IPR013187 Pfam:PF08268 EMBL:AY219123 EMBL:AY219124
IPI:IPI00520817 IPI:IPI00526029 PIR:T00755 RefSeq:NP_181623.2
RefSeq:NP_973653.1 UniGene:At.42897 ProteinModelPortal:Q3EBI7
SMR:Q3EBI7 EnsemblPlants:AT2G40910.1 GeneID:818688
KEGG:ath:AT2G40910 TAIR:At2g40910 eggNOG:NOG299252
HOGENOM:HOG000112509 InParanoid:Q3EBI7 OMA:ERKDIRY PhylomeDB:Q3EBI7
ProtClustDB:CLSN2683648 Genevestigator:Q3EBI7 Uniprot:Q3EBI7
Length = 449
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSM 59
MK R++LK+AAE + ++ QS+ QVVSLR S+ ++++D K + SLAL PAK M
Sbjct: 1 MKRRRRDLKQAAESEQ---EECQSVPQVVSLRDSDQLQIMDEKGDNSLALLPAKLPMRM 56
>ASPGD|ASPL0000074179 [details] [associations]
symbol:AN8712 species:162425 "Emericella nidulans"
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0033592 "RNA strand annealing activity" evidence=IEA]
HAMAP:MF_00216 InterPro:IPR001253 InterPro:IPR006196
InterPro:IPR018104 Pfam:PF01176 ProDom:PD005579 PROSITE:PS01262
PROSITE:PS50832 SMART:SM00652 GO:GO:0003743 EMBL:BN001303
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000223675 PANTHER:PTHR21668 TIGRFAMs:TIGR00523
OMA:GHIRGKL EnsemblFungi:CADANIAT00006358 Uniprot:C8VA34
Length = 149
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 35/121 (28%), Positives = 59/121 (48%)
Query: 2 KGGRKNLKRAA-----EEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R E++ L ++GQ QVV + G+ +E L EK LA K
Sbjct: 7 KGG-KNRRRGKNENDNEKRELVFKEEGQEYAQVVKMLGNGRLEALCFDGEKRLAHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI +G +++ S ++ + G ++ K ++ R+L+ E PE K +
Sbjct: 66 RKKVWINQGDIILL--SLRDYQDEKGD----VIMKYTA-DEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 172 147 0.00091 103 3 11 23 0.37 32
30 0.50 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 581 (62 KB)
Total size of DFA: 130 KB (2082 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.96u 0.07s 13.03t Elapsed: 00:00:02
Total cpu time: 12.96u 0.07s 13.03t Elapsed: 00:00:02
Start: Mon May 20 18:29:43 2013 End: Mon May 20 18:29:45 2013