BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030718
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a
           In Mgc11102 Protein
          Length = 111

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 6/88 (6%)

Query: 23  QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
           Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G 
Sbjct: 16  QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGE 69

Query: 83  KVACIVTKVLFYEQVRALQKSTEWPEIF 110
           KV   ++ VL  + VR+LQK   WPE F
Sbjct: 70  KVKAEISFVLCKDHVRSLQKEGFWPEAF 97


>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a
          Length = 143

 Score = 35.4 bits (80), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 2   KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
           KGG KN +R      +E++ L   +DGQ   QV+ + G+  +E +     K L     K 
Sbjct: 6   KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKL 64

Query: 56  QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
           +K +WI     ++V        ++D       V      ++ R+L+   E PE  K   +
Sbjct: 65  RKKVWINTSDIILV-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 117

Query: 116 D 116
           D
Sbjct: 118 D 118


>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum
           Translation Initiation Factor Eif-1a
          Length = 117

 Score = 27.3 bits (59), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 20  QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIK 79
           ++GQ   QV    G+  ++      +K L     K +K +W+  G  V+V       +++
Sbjct: 30  EEGQEYGQVQRXLGNGRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIVLV-------SLR 82

Query: 80  DGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111
           D       +      ++ RAL+   E PE  K
Sbjct: 83  DFQDSKGDIILKYTPDEARALKSKGEIPETTK 114


>pdb|4AN5|A Chain A, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
 pdb|4AN5|B Chain B, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
 pdb|4AN5|C Chain C, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
 pdb|4AN5|D Chain D, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
 pdb|4AN5|E Chain E, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
 pdb|4AN5|F Chain F, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
 pdb|4AN5|G Chain G, Capsid Structure And Its Stability At The Late Stages Of
           Bacteriophage Spp1 Assembly
          Length = 324

 Score = 26.9 bits (58), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 21/88 (23%)

Query: 14  EQSLTLQDGQSIMQVVSLRGS--------NLIEVLDAKDEKSLALFPAKFQKSMWIKRGS 65
           + S  L D +S++  + +  +        +LIE +  KD +S   FP    K        
Sbjct: 165 DASYKLGDHESLLTAIGMHSATMASAVKQDLIEFV--KDSQSGIRFPTYMNKR------- 215

Query: 66  FVVVDESGKEKAIKDGSKVACIVTKVLF 93
            V+VD+S   + ++DG+KV    T  LF
Sbjct: 216 -VIVDDSMPVETLEDGTKV---FTSYLF 239


>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
          (Melanoma Differentiation-Associated Protein 5),
          Dech-Domain
          Length = 216

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 16/89 (17%)

Query: 10 RAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKS-LALFPAKFQKSMWIKRGSFVV 68
          RA+ E  L L+  Q  +   +L G N+I  L     K+ +A++ AK              
Sbjct: 25 RASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAK-------------- 70

Query: 69 VDESGKEKAIKDGSKVACIVTKVLFYEQV 97
           D   K+K   +  KV  +V KVL  EQ+
Sbjct: 71 -DHLDKKKKASEPGKVIVLVNKVLLVEQL 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,899,162
Number of Sequences: 62578
Number of extensions: 129332
Number of successful extensions: 215
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 7
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)