BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030718
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V9J5|EIF1A_XENTR Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis GN=eif1ad
PE=2 SV=1
Length = 179
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 19/141 (13%)
Query: 23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
Q I++V+ G+NL EV ++ E+ LA P KF+K++WIKRG F++VD I +G
Sbjct: 25 QRIVKVLGSPGNNLHEVETSEGERFLASMPTKFRKNIWIKRGDFLIVD------PIAEGE 78
Query: 83 KVACIVTKVLFYEQVRALQKSTEWPEIFKS------TNSDDANGSLERQACN----HEEN 132
KV + +L+ + R LQK WPE F T ++ NG +A + E+
Sbjct: 79 KVKAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGVVTKENENNGIQSTEALSTAQAKEQG 138
Query: 133 DQSESDDDDGLPPLEANINRM 153
+ SE+DDD GL N NR+
Sbjct: 139 EDSETDDDSGLF---VNTNRV 156
>sp|Q5HZM1|EIF1A_XENLA Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad
PE=2 SV=1
Length = 169
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
QSI++V+ G+NL EV A+ E+ LA P KF+K++WIKRG F++VD I +G
Sbjct: 25 QSIVKVLGSPGNNLHEVETAEGERFLASMPTKFRKNIWIKRGDFLIVD------PIVEGE 78
Query: 83 KVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD------DANGSLERQACNHEENDQSE 136
KV + +L+ + R LQK WPE F + +++G +A + + SE
Sbjct: 79 KVKAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGLVAKEKESSGIQSTEAQAKPQGEDSE 138
Query: 137 SDDDDGL 143
+DDD GL
Sbjct: 139 TDDDSGL 145
>sp|Q58CY2|EIF1A_BOVIN Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2
SV=1
Length = 166
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 119
F++VD I++G KV ++ VL + VR+LQK WPE F D N
Sbjct: 67 DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNN 115
>sp|Q3THJ3|EIF1A_MOUSE Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2
SV=2
Length = 170
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL VR+LQK WPE F N + E
Sbjct: 67 DFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRES 120
Query: 125 Q 125
Q
Sbjct: 121 Q 121
>sp|Q5RKI6|EIF1A_RAT Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad
PE=2 SV=1
Length = 167
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVQEVLGEHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL VR+LQK WPE F N + E
Sbjct: 67 DFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNVNRES 120
Query: 125 Q 125
Q
Sbjct: 121 Q 121
>sp|Q7SY07|EIF1A_DANRE Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2
SV=1
Length = 172
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + E +T + Q IM+V+ G+NL E + E+ L P KF+K++WIKRG
Sbjct: 7 RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111
FV+VD IK+G KV ++ +L+ + ++ L+K WPE F+
Sbjct: 67 DFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQ 107
>sp|Q5RD29|EIF1A_PONAB Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2
SV=1
Length = 166
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
F++VD I++G KV ++ VL + VR+LQK WPE F S ++ N + R
Sbjct: 67 DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF-SEVAEKHNNNRNR 119
Query: 125 QA 126
Q
Sbjct: 120 QT 121
>sp|Q4R354|EIF1A_MACFA Probable RNA-binding protein EIF1AD OS=Macaca fascicularis
GN=EIF1AD PE=2 SV=1
Length = 165
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 67 DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106
>sp|Q8N9N8|EIF1A_HUMAN Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1
SV=1
Length = 165
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ + + + D Q I++V+ G+NL EV A+ ++ L P+K++K++WIKRG
Sbjct: 7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 67 DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106
>sp|Q8IQ13|EIF1A_DROME Probable RNA-binding protein EIF1AD OS=Drosophila melanogaster
GN=CG31957 PE=2 SV=1
Length = 159
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 5 RKNLKRAAEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKR 63
RK+L + E L + Q I +V+S RG+NL EV + DE L P KF+KSMW+KR
Sbjct: 11 RKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEV-ETVDETFLVSMPNKFRKSMWVKR 69
Query: 64 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 123
G F++V+ I++G KV + K+L E ++ K+ WP+ F ++
Sbjct: 70 GDFLLVE------PIEEGDKVKAEICKILTPEHIKEYTKAAIWPDKF-------TKKPVQ 116
Query: 124 RQACNHEENDQSESD-DDDGLPPLEANINR 152
+A + ++D SD +DD LP +NR
Sbjct: 117 EEATSQNKDD---SDFEDDLLPNTNRPVNR 143
>sp|Q6K1L7|EIF1A_CHICK Probable RNA-binding protein EIF1AD OS=Gallus gallus GN=eif1ad PE=2
SV=1
Length = 188
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RK++ R E+ + Q I++V+ G+NL EV A + LA P +F+ +WIKRG
Sbjct: 7 RKHVTREVLEEHVVPAPQQRIVRVLGSPGNNLHEVETADGSRFLASMPPRFRHHVWIKRG 66
Query: 65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST 113
F++VD I++G+KV + VL VR LQ+ WP F ++
Sbjct: 67 DFLLVD------PIEEGAKVKAEMALVLLRPHVRFLQRQGLWPTAFAAS 109
>sp|Q29MZ0|EIF1A_DROPS Probable RNA-binding protein EIF1AD OS=Drosophila pseudoobscura
pseudoobscura GN=GA16587 PE=3 SV=1
Length = 163
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 5 RKNLKRAAEEQSLTLQ-DGQSIMQVVSLRGSNLIEVLDA--KDEKSLALFPAKFQKSMWI 61
RK+L + E L + Q I++VV G+NL EV A + E L P K++K+MW+
Sbjct: 11 RKHLIKEMMEDDYELPTEQQQIVRVVRSCGNNLHEVETATPESENFLVSMPNKYRKNMWV 70
Query: 62 KRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDA 118
KRG F++V+ I++G KV ++K+L + V+ K+ WPE F +A
Sbjct: 71 KRGDFLLVE------PIEEGDKVKAEISKILTNDHVKEYTKAGIWPERFAKNPPQEA 121
>sp|P0C659|EIF1A_CAEBR Probable RNA-binding protein EIF1AD OS=Caenorhabditis briggsae
GN=CBG09545 PE=3 SV=1
Length = 176
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 25 IMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKV 84
I QV RG+NL EVLD + + P KF+K++W++R FVVV + I +G KV
Sbjct: 27 IAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKAVWLRRDQFVVV------RPIAEGDKV 80
Query: 85 ACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLP 144
+ +L + V +++ +WP F ++ + R+A + ND+ DDD LP
Sbjct: 81 KGEIEYILDQDNVLYIRELGKWPSCF-----EEHALKMTREAKRGKANDK--MIDDDMLP 133
Query: 145 P 145
P
Sbjct: 134 P 134
>sp|Q23646|EIF1A_CAEEL Probable RNA-binding protein EIF1AD OS=Caenorhabditis elegans
GN=ZK856.11 PE=1 SV=1
Length = 175
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 19 LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAI 78
L D I QV RG+NL EVLD + + P KF+KS+W++R FVVV + I
Sbjct: 21 LVDEDIIAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWLRRDQFVVV------RPI 74
Query: 79 KDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESD 138
+G KV + +L + V +++ +WP F ++ + R+A + +D+
Sbjct: 75 TEGDKVKGEIEYILDQDNVLYIRELGKWPTCF-----EENALKMTREAKRGQTSDK--MI 127
Query: 139 DDDGLPP 145
DDD LPP
Sbjct: 128 DDDMLPP 134
>sp|Q3EBI7|FB130_ARATH F-box protein At2g40910 OS=Arabidopsis thaliana GN=At2g40910 PE=2
SV=1
Length = 449
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSM 59
MK R++LK+AAE + ++ QS+ QVVSLR S+ ++++D K + SLAL PAK M
Sbjct: 1 MKRRRRDLKQAAESEQ---EECQSVPQVVSLRDSDQLQIMDEKGDNSLALLPAKLPMRM 56
>sp|Q9Y803|YN98_SCHPO S1-like domain-containing protein C146.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC146.08c PE=1 SV=1
Length = 127
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 19 LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDES-GKEKA 77
L+ Q + +VV L+GS L V++ ++ L P K++ +W++R FV+VD+S EK
Sbjct: 17 LEKDQVVAKVVQLKGSALFMVVENNGQELLVEMPPKYRNKIWVRRNGFVIVDKSEFLEKD 76
Query: 78 IKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF--KSTNSDD 117
K + +V L + +K WP+ F +S N +D
Sbjct: 77 NKIDGTILYVVQSPL-----KNWKKQIYWPKEFADESLNQND 113
>sp|B0R7D8|IF1A_HALS3 Translation initiation factor 1A OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=eIF1A PE=3 SV=1
Length = 95
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 3 GGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIK 62
GGRKNL+ +D + +V + G+N ++V A E+ A P + QK +WI+
Sbjct: 6 GGRKNLR--------MPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIR 57
Query: 63 RGSFVVV 69
V+V
Sbjct: 58 EDDIVLV 64
>sp|Q9HN64|IF1A1_HALSA Translation initiation factor 1A 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=eIF1A1 PE=3
SV=1
Length = 95
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 3 GGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIK 62
GGRKNL+ +D + +V + G+N ++V A E+ A P + QK +WI+
Sbjct: 6 GGRKNLR--------MPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIR 57
Query: 63 RGSFVVV 69
V+V
Sbjct: 58 EDDIVLV 64
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A OS=Triticum aestivum
PE=1 SV=2
Length = 144
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 2 KGGRKNLKRAAEE------QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN KR E + + +DGQ QV + G+ E + K L K
Sbjct: 7 KGG-KNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKM 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
K +WI G V+V ++D V ++ R L+ E P+ +
Sbjct: 66 HKKVWIAAGDIVLV-------GLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEG 118
Query: 116 DDANGSLE 123
D +G E
Sbjct: 119 VDVDGPEE 126
>sp|C3N8M9|IF1A_SULIY Translation initiation factor 1A OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|C3NMA0|IF1A_SULIN Translation initiation factor 1A OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|C3MU29|IF1A_SULIM Translation initiation factor 1A OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|C3MK60|IF1A_SULIL Translation initiation factor 1A OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|C4KK84|IF1A_SULIK Translation initiation factor 1A OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=eIF1A PE=3 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|C3N0P1|IF1A_SULIA Translation initiation factor 1A OS=Sulfolobus islandicus (strain
M.16.27) GN=eIF1A PE=3 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|Q97W62|IF1A_SULSO Translation initiation factor 1A OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=eIF1A PE=3 SV=1
Length = 108
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
++GQ+I V + G + + VL ++ LA P K +K MW++ G V+V
Sbjct: 19 EEGQTICVVKKMLGGDHLIVLCMDGKERLARIPGKIRKKMWMREGDVVLV 68
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TIF11 PE=1
SV=1
Length = 153
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIK 79
++GQ Q+ + G+ +E K +A K +K +W+ +G ++V +++
Sbjct: 30 EEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILV-------SLR 82
Query: 80 DGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDD 117
D C V ++ R L+ E PE K +D+
Sbjct: 83 DFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDN 120
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A OS=Onobrychis
viciifolia PE=2 SV=2
Length = 145
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 2 KGGRKNLKRAAEE------QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN KR E + + +DGQ QV+ + G+ E + K L K
Sbjct: 7 KGG-KNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKM 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPE 108
K +WI G ++V ++D V L ++ R L+ E P+
Sbjct: 66 HKKVWIAAGDIILV-------GLRDYQDDKADVILKLMPDEARLLKAYGELPD 111
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan
troglodytes GN=EIF1AY PE=2 SV=3
Length = 144
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E L K L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI ++V ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILV-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo
sapiens GN=EIF1AY PE=1 SV=4
Length = 144
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E L K L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI ++V ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILV-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|Q5RA42|IF1AX_PONAB Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo
abelii GN=EIF1AX PE=2 SV=3
Length = 144
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E + K L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI ++V ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILV-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus
musculus GN=Eif1ax PE=2 SV=3
Length = 144
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E + K L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI ++V ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILV-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo
sapiens GN=EIF1AX PE=1 SV=2
Length = 144
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E + K L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI ++V ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILV-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|Q54YJ6|IF1A_DICDI Eukaryotic translation initiation factor 1A OS=Dictyostelium
discoideum GN=eif1a PE=3 SV=1
Length = 141
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 2 KGGRKNLKRAAEE--QSLTLQ---DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQ 56
KGG KN +R E Q LQ +GQ QV+ + G+ +E EK L + +
Sbjct: 7 KGG-KNRRRGKNENEQKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLR 65
Query: 57 KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD 116
K WI G +++ ++D V ++ R L+ E PE + +D
Sbjct: 66 KKEWINNGDIILI-------QLRDYQNDKADVILRYNVDEARNLKTYGELPETARINETD 118
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A OS=Rattus norvegicus
GN=Eif1a PE=2 SV=3
Length = 144
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E + + L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI +++ ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILI-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A OS=Mus musculus
GN=Eif1a PE=2 SV=3
Length = 144
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E + + L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKL 65
Query: 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 115
+K +WI +++ ++D V ++ R+L+ E PE K +
Sbjct: 66 RKKVWINTSDIILI-------GLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINET 118
Query: 116 D 116
D
Sbjct: 119 D 119
>sp|Q974Z9|IF1A_SULTO Translation initiation factor 1A OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=eIF1A PE=3
SV=2
Length = 108
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 21 DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVV 68
+G+ I V + G+ ++V+ ++ L P K +K MW+K G V+
Sbjct: 20 EGEVICVVKKMLGAEHVQVICLDGKERLGRIPGKMKKKMWVKEGDVVL 67
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tif11 PE=2 SV=2
Length = 138
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 26/127 (20%)
Query: 2 KGGRKNLKRAA-----EEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R E++ LT ++GQ QV + G+ IE K L K
Sbjct: 7 KGG-KNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKL 65
Query: 56 QKSMWIKRGSFVVV------DESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEI 109
+K +WI +G +++ DE G ++ K ++ R L+ E PE
Sbjct: 66 RKKVWINQGDIILLSLREFQDEKGD------------VILKYT-ADEARTLKNQGELPET 112
Query: 110 FKSTNSD 116
K +D
Sbjct: 113 AKINETD 119
>sp|Q3IT14|IF1A_NATPD Translation initiation factor 1A OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1
Length = 97
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 4 GRKNLKRAAEEQSLTLQDGQSIMQVVS-LRGSNLIEVLDAKDEKSLALFPAKFQKSMWIK 62
GRKNL+ + +G + VV+ + G+N ++V + A P + QK +WI+
Sbjct: 6 GRKNLR---------MPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIR 56
Query: 63 RGSFVVVD 70
V+V+
Sbjct: 57 EDDVVLVE 64
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A OS=Oryctolagus
cuniculus GN=EIF1A PE=1 SV=2
Length = 144
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 2 KGGRKNLKRA-----AEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKF 55
KGG KN +R +E++ L +DGQ QV+ + G+ +E + K L K
Sbjct: 7 KGG-KNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKL 65
Query: 56 QKSMWIKRGSFVVV 69
+K +WI ++V
Sbjct: 66 RKKVWINTSDIILV 79
>sp|Q4JA54|IF1A_SULAC Translation initiation factor 1A OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=eif1a PE=3 SV=1
Length = 108
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 21 DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVV 68
+G+ I V L G ++V+ ++ L P K +K +WI+ G V+
Sbjct: 20 EGEVICVVKKLFGGEHVQVICTDGKERLGRIPGKLKKKVWIREGDVVL 67
>sp|Q18EX1|IF1A1_HALWD Translation initiation factor 1A 1 OS=Haloquadratum walsbyi
(strain DSM 16790) GN=eif1a1 PE=3 SV=1
Length = 96
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 15 QSLTLQDGQSIMQVVS-LRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
L + D + VV+ + G+N + V A + A P + QK +WI+ V+V
Sbjct: 10 HDLRMPDDDEVFAVVTNMLGANRVTVRCADGNERTARIPGRMQKRIWIREDDVVLV 65
>sp|Q5UZM2|IF1A_HALMA Translation initiation factor 1A OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=eif1a PE=3 SV=2
Length = 95
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
RKNL+ E++ + V+ + G+N ++V + A P K QK +WI+
Sbjct: 7 RKNLRMPEEDEVFAV--------VMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIRED 58
Query: 65 SFVVVD 70
V+V+
Sbjct: 59 DVVLVE 64
>sp|P57676|IF1A_AERPE Translation initiation factor 1A OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=eIF1A PE=3 SV=1
Length = 111
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 21 DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVV 68
+G + V + G+ +EVL E +A P K ++ +W++ G V+
Sbjct: 21 EGTMLCIVQRVVGAGFLEVLCTDGEVYMARIPGKMRRRVWMREGDVVL 68
>sp|O29481|IF1A_ARCFU Translation initiation factor 1A OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=eIF1A PE=3 SV=2
Length = 97
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVV 69
G+ V S+ G+ I+V + LA P K +K +WI+ G V+V
Sbjct: 18 GELFGVVTSMLGAGHIKVRCEDGVERLARIPGKMRKKIWIREGDVVIV 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,141,872
Number of Sequences: 539616
Number of extensions: 2311300
Number of successful extensions: 14354
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 9009
Number of HSP's gapped (non-prelim): 4417
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)