Query 030718
Match_columns 172
No_of_seqs 145 out of 330
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dgy_A MGC11102 protein; EIF-1 100.0 3.7E-36 1.3E-40 228.0 9.9 94 13-112 6-99 (111)
2 1d7q_A Translation initiation 100.0 2.3E-35 7.8E-40 232.2 9.6 101 5-112 14-114 (143)
3 1jt8_A EIF-1A, probable transl 100.0 7.2E-33 2.5E-37 207.2 4.1 86 16-107 12-99 (102)
4 2oqk_A Putative translation in 100.0 3.8E-31 1.3E-35 201.7 7.7 101 5-112 15-115 (117)
5 1ah9_A IF1, initiation factor 99.7 2E-17 6.9E-22 115.2 4.1 65 22-93 6-71 (71)
6 1hr0_W Translation initiation 99.6 1.4E-17 4.6E-22 116.3 -1.4 64 22-92 7-71 (71)
7 3i4o_A Translation initiation 99.6 6.4E-16 2.2E-20 110.6 6.1 64 22-92 14-78 (79)
8 2rcn_A Probable GTPase ENGC; Y 95.1 0.072 2.5E-06 46.5 8.3 70 24-102 48-117 (358)
9 1t9h_A YLOQ, probable GTPase E 94.3 0.093 3.2E-06 44.7 6.8 60 26-95 13-76 (307)
10 2wfw_A ARC; ATP-binding protei 92.2 0.24 8.1E-06 39.0 5.5 51 23-73 68-136 (153)
11 2yv5_A YJEQ protein; hydrolase 88.9 0.93 3.2E-05 37.7 6.6 49 22-73 5-56 (302)
12 2wg5_A General control protein 87.5 1 3.5E-05 32.9 5.4 51 20-71 35-85 (109)
13 3h43_A Proteasome-activating n 83.0 3.4 0.00012 28.9 6.1 51 20-71 16-66 (85)
14 3d3r_A Hydrogenase assembly ch 81.6 6.7 0.00023 28.7 7.4 55 26-101 28-86 (103)
15 2z1c_A Hydrogenase expression/ 77.6 10 0.00035 26.0 7.0 52 26-100 7-61 (75)
16 3m9b_A Proteasome-associated A 74.8 5.7 0.00019 33.4 5.9 51 23-73 159-226 (251)
17 3mxn_B RECQ-mediated genome in 71.9 3.5 0.00012 32.2 3.7 44 26-70 65-108 (150)
18 1ssf_A Transformation related 69.2 8.2 0.00028 30.3 5.3 28 25-52 27-54 (156)
19 2g3r_A Tumor suppressor P53-bi 69.0 20 0.00069 27.1 7.2 26 25-50 23-48 (123)
20 2ot2_A Hydrogenase isoenzymes 67.5 18 0.00063 25.6 6.5 58 25-100 6-67 (90)
21 4gop_A Putative uncharacterize 62.5 12 0.00039 27.4 4.7 29 24-53 23-51 (114)
22 3m9b_A Proteasome-associated A 53.6 15 0.00051 30.9 4.5 63 19-91 95-164 (251)
23 4dov_A ORC1, origin recognitio 51.3 17 0.00057 28.7 4.2 16 58-73 36-51 (163)
24 4b4t_J 26S protease regulatory 51.1 32 0.0011 30.4 6.4 52 19-71 66-117 (405)
25 3tnd_B Antitoxin VAPB; PIN dom 50.1 19 0.00065 25.1 3.9 32 40-71 11-48 (81)
26 3jsy_A Acidic ribosomal protei 49.8 15 0.00053 29.4 3.9 44 51-112 141-185 (213)
27 4b4t_L 26S protease subunit RP 48.4 31 0.001 30.6 5.9 51 20-71 100-150 (437)
28 3j21_k Acidic ribosomal protei 43.3 18 0.00063 31.1 3.6 43 51-111 145-188 (339)
29 3u5e_Y L33, YL33, 60S ribosoma 41.2 28 0.00097 26.2 3.9 38 51-95 39-77 (127)
30 2equ_A PHD finger protein 20-l 39.2 13 0.00045 25.3 1.6 41 21-61 22-69 (74)
31 3iz5_s 60S acidic ribosomal pr 39.2 21 0.00073 30.5 3.3 43 51-111 146-189 (319)
32 4a17_S RPL26, 60S ribosomal pr 37.7 33 0.0011 26.2 3.8 38 51-95 38-76 (135)
33 3j21_U 50S ribosomal protein L 37.3 37 0.0013 25.3 4.0 37 52-95 36-73 (121)
34 3kdf_A Replication protein A 1 36.0 62 0.0021 23.7 5.0 60 24-92 27-87 (121)
35 3p8d_A Medulloblastoma antigen 35.9 61 0.0021 21.7 4.5 31 20-50 18-49 (67)
36 4b4t_I 26S protease regulatory 35.3 52 0.0018 29.4 5.4 51 20-71 101-151 (437)
37 3v2d_Y 50S ribosomal protein L 35.3 29 0.00098 25.5 3.1 31 58-95 4-34 (110)
38 2pi2_E Replication protein A 1 35.1 49 0.0017 25.1 4.5 58 24-91 48-107 (142)
39 3iz5_Y 60S ribosomal protein L 34.5 39 0.0013 26.2 3.8 38 51-95 38-76 (150)
40 1vq8_T 50S ribosomal protein L 33.0 44 0.0015 24.9 3.8 32 57-95 39-70 (120)
41 2fhz_B Colicin-E5; protein-pro 30.9 23 0.00078 26.0 1.8 26 58-95 65-90 (108)
42 3qii_A PHD finger protein 20; 30.5 82 0.0028 22.1 4.7 31 20-50 33-64 (85)
43 1gut_A Mopii, molybdate bindin 29.0 50 0.0017 20.5 3.1 50 21-70 6-58 (68)
44 3r8s_R 50S ribosomal protein L 26.9 1.7E+02 0.0059 20.9 6.0 55 32-93 7-68 (103)
45 1nnx_A Protein YGIW; structura 25.2 69 0.0024 23.2 3.6 45 25-70 43-87 (109)
46 2zkr_g 60S acidic ribosomal pr 25.0 15 0.00052 31.4 0.0 45 48-110 140-185 (317)
47 3uf8_A Ubiquitin-like protein 24.9 1.2E+02 0.0041 23.8 5.3 48 20-71 82-129 (209)
48 2fhd_A RAD9 homolog, DNA repai 24.8 95 0.0032 24.2 4.5 36 33-70 38-73 (153)
49 2z0t_A Putative uncharacterize 24.6 93 0.0032 22.6 4.2 50 32-103 17-66 (109)
50 2zjr_R 50S ribosomal protein L 24.6 38 0.0013 24.9 2.1 33 56-95 11-43 (115)
51 4b4t_K 26S protease regulatory 24.2 1.1E+02 0.0037 26.9 5.4 50 20-70 91-140 (428)
52 1jlx_A Agglutinin, amaranthin, 23.7 49 0.0017 28.4 2.9 35 36-70 44-81 (303)
53 1vq8_G Acidic ribosomal protei 22.8 18 0.00061 31.5 0.0 43 50-110 146-189 (348)
54 2glw_A PHS018, 92AA long hypot 22.7 11 0.00039 26.5 -1.1 22 49-70 17-38 (92)
55 3mea_A SAGA-associated factor 22.0 1.6E+02 0.0053 23.3 5.4 22 24-45 65-87 (180)
56 3u5i_q A0, L10E, 60S acidic ri 21.2 20 0.00069 30.6 0.0 45 49-111 139-184 (312)
57 3nok_A Glutaminyl cyclase; bet 21.1 3.4E+02 0.012 22.3 7.6 26 29-54 149-174 (268)
58 1u0l_A Probable GTPase ENGC; p 20.7 1.9E+02 0.0066 23.3 5.9 31 25-56 12-43 (301)
No 1
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=228.00 Aligned_cols=94 Identities=37% Similarity=0.657 Sum_probs=89.2
Q ss_pred hhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718 13 EEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL 92 (172)
Q Consensus 13 ~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl 92 (172)
.+++++|++||+||+|++++|||+|+|+|+||.++||+|||||||+|||++||||+|++|++ ++++||+|+|+|
T Consensus 6 l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~y------d~~~kg~Iv~r~ 79 (111)
T 2dgy_A 6 SGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEE------GEKVKAEISFVL 79 (111)
T ss_dssp CCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSS------CSSCCEEEEEEC
T ss_pred hccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEeccc------CCcceEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999975 347899999999
Q ss_pred CHHHHHHHHhCCCCchhhhc
Q 030718 93 FYEQVRALQKSTEWPEIFKS 112 (172)
Q Consensus 93 ~~~qvk~Lrk~g~WP~~F~~ 112 (172)
+++|||+|+++|+||++|.+
T Consensus 80 ~~~qvk~L~k~g~wP~~F~~ 99 (111)
T 2dgy_A 80 CKDHVRSLQKEGFWPEAFSE 99 (111)
T ss_dssp CHHHHHHHHHHTCSCHHHHH
T ss_pred CHHHHHHHHHcCCCChHHhh
Confidence 99999999999999999987
No 2
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=100.00 E-value=2.3e-35 Score=232.19 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=93.2
Q ss_pred chhHHHHHhhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCee
Q 030718 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKV 84 (172)
Q Consensus 5 Rk~~~~~~~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~Kv 84 (172)
+||+...+..++++|+++|++|+|++++|||+|+|+|++|.++||+|||||||+|||++||+|||++|++ +. .
T Consensus 14 ~K~~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~y-----d~--~ 86 (143)
T 1d7q_A 14 GKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDY-----QD--N 86 (143)
T ss_dssp CCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSS-----SS--S
T ss_pred ccccchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccC-----CC--C
Confidence 4677655556689999999999999999999999999999999999999999999999999999999986 23 5
Q ss_pred eEEEEEEeCHHHHHHHHhCCCCchhhhc
Q 030718 85 ACIVTKVLFYEQVRALQKSTEWPEIFKS 112 (172)
Q Consensus 85 kgeIv~vl~~~qvk~Lrk~g~WP~~F~~ 112 (172)
||+|+|+|+++||++|+++|+||++|..
T Consensus 87 KG~Ii~r~~~devk~L~k~g~wP~~f~~ 114 (143)
T 1d7q_A 87 KADVILKYNADEARSLKAYGELPEHAKI 114 (143)
T ss_dssp CCEEEEEECTTTHHHHHHHTSSCTTCCC
T ss_pred eEEEEEEeCHHHHHHHHHcCCCChHHhh
Confidence 7999999999999999999999999977
No 3
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.97 E-value=7.2e-33 Score=207.20 Aligned_cols=86 Identities=14% Similarity=0.246 Sum_probs=81.2
Q ss_pred cCCCC--CCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718 16 SLTLQ--DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF 93 (172)
Q Consensus 16 ~~~p~--e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~ 93 (172)
+++|+ ++|++|+|++++|||+|+|+|+||.++||+|||||||+|||++||+|+|++|++ +.+.||+|+|+|+
T Consensus 12 ~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~y------d~~~Kg~Iv~r~~ 85 (102)
T 1jt8_A 12 VRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEV------QGDQKCDIIWRYT 85 (102)
T ss_dssp CCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCC------TTSEEEEEEEESS
T ss_pred cccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccC------CCCceEEEEEEeC
Confidence 66776 999999999999999999999999999999999999999999999999999986 2347899999999
Q ss_pred HHHHHHHHhCCCCc
Q 030718 94 YEQVRALQKSTEWP 107 (172)
Q Consensus 94 ~~qvk~Lrk~g~WP 107 (172)
++|+++|+++|+||
T Consensus 86 ~de~~~L~k~g~~p 99 (102)
T 1jt8_A 86 KTQVEWLKRKGYLD 99 (102)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999999999
No 4
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=3.8e-31 Score=201.65 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=88.1
Q ss_pred chhHHHHHhhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCee
Q 030718 5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKV 84 (172)
Q Consensus 5 Rk~~~~~~~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~Kv 84 (172)
+||+......++++|+++|++|+|++++||++|.|+|+||.++||+||||||++|||.+||+|+|+++++ +. .
T Consensus 15 ~k~~~~~~~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~-----~~--~ 87 (117)
T 2oqk_A 15 GKNDSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDF-----QD--S 87 (117)
T ss_dssp -------CCCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTT-----CT--T
T ss_pred cccccchhhhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcC-----CC--C
Confidence 4677665566689999999999999999999999999999999999999999999999999999999875 22 5
Q ss_pred eEEEEEEeCHHHHHHHHhCCCCchhhhc
Q 030718 85 ACIVTKVLFYEQVRALQKSTEWPEIFKS 112 (172)
Q Consensus 85 kgeIv~vl~~~qvk~Lrk~g~WP~~F~~ 112 (172)
+|.|++||.++||++|+++|+||++|..
T Consensus 88 kG~I~~~~~r~~~k~l~~~g~~p~~f~~ 115 (117)
T 2oqk_A 88 KGDIILKYTPDEARALKSKGEIPETTKI 115 (117)
T ss_dssp EEEEEEECCHHHHHHHHHTTSSCTTCCC
T ss_pred eEEEEEEechHHHHHHHHcCCCCcccCc
Confidence 7999999999999999999999999975
No 5
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.68 E-value=2e-17 Score=115.19 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=57.8
Q ss_pred CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccce-EEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718 22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKS-MWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF 93 (172)
Q Consensus 22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~-vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~ 93 (172)
.++.++|++++||++|.|+|++|..++|+||||||++ +||..||+|+|++++++ . .+|.|+|+|.
T Consensus 6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~-----~--~kg~I~~r~~ 71 (71)
T 1ah9_A 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYD-----L--SKGRIVFRSR 71 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSC-----T--TEEEECSCCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCC-----C--CEEEEEEEEC
Confidence 3568999999999999999999999999999999976 99999999999987641 2 3799999874
No 6
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.62 E-value=1.4e-17 Score=116.29 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=57.6
Q ss_pred CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718 22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL 92 (172)
Q Consensus 22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl 92 (172)
.++.++|++++||++|.|+|++|..++|+||||||| +|||..||+|+|++++++ . .+|.|+|+|
T Consensus 7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~-----~--~kg~I~~r~ 71 (71)
T 1hr0_W 7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYD-----P--TRGRIVYRK 71 (71)
T ss_dssp CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTC-----T--TCCEECSCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCC-----C--CEEEEEEeC
Confidence 567899999999999999999999999999999996 999999999999998642 2 369999876
No 7
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.61 E-value=6.4e-16 Score=110.62 Aligned_cols=64 Identities=17% Similarity=0.042 Sum_probs=59.3
Q ss_pred CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718 22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL 92 (172)
Q Consensus 22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl 92 (172)
-++.++|++++||+.|.|.|.||.+++|+|+||||| +|||..||.|+|++|+++ . -||.|+|+|
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd-----~--~kgrIi~R~ 78 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYD-----L--SRGRIVYRY 78 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTE-----E--EEEEEEEEC
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccC-----C--CcEEEEEEc
Confidence 578899999999999999999999999999999998 999999999999999862 3 479999997
No 8
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.12 E-value=0.072 Score=46.49 Aligned_cols=70 Identities=21% Similarity=0.141 Sum_probs=50.9
Q ss_pred EEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHh
Q 030718 24 SIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQK 102 (172)
Q Consensus 24 ~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk 102 (172)
+.++|++..| ++|.|.+++|..+.|.+.++|++ +-.||.|++.+.+- .+.|..++|-|+.|+-+. -.|.+
T Consensus 48 ~~g~Vi~~~~-~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~---~~~~~~~~~~I~~i~~R~--~~l~R 117 (358)
T 2rcn_A 48 AEGIVISRFG-MHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKA---AAEGVNVKGIVEAVHERT--SVLTR 117 (358)
T ss_dssp EEEEEEEEET-TEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC----------CCEEEEEECCCS--CEEEE
T ss_pred ceEEEEEEEC-CEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCC---ccccccccceEeEEeCCc--CcccC
Confidence 5799998766 57789999999999999999987 66999999986320 011111248899998876 44544
No 9
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.30 E-value=0.093 Score=44.70 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=44.9
Q ss_pred EEEEeecCCceEEEEeCC---CCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 26 MQVVSLRGSNLIEVLDAK---DEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 26 ~rV~~~~G~nl~eV~~~d---G~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
++|++..| +.|.|.+.+ |..+.|.++|+||+ .+=+-.||.|.+.+.+ ++ .|-|..|+.+.
T Consensus 13 g~vi~~~~-~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~-------~~--~~~i~~i~~R~ 76 (307)
T 1t9h_A 13 GKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN-------DK--EGYLMEIKERT 76 (307)
T ss_dssp EEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT-------TS--CEEEEEECCCS
T ss_pred eEEEEEEC-CEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC-------CC--ceEEEEEcchh
Confidence 66777665 677888876 88999999999996 2334489999998632 22 48888888764
No 10
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=92.20 E-value=0.24 Score=39.03 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=41.4
Q ss_pred cEEEEEEeecCC-ceEEEEeCCCCEEEEEeeccccceE-----------------EEeeCCEEEEecCC
Q 030718 23 QSIMQVVSLRGS-NLIEVLDAKDEKSLALFPAKFQKSM-----------------WIKRGSFVVVDESG 73 (172)
Q Consensus 23 q~I~rV~~~~G~-nl~eV~~~dG~~~L~~iP~KfRK~v-----------------WIkrGD~VlV~p~~ 73 (172)
-.|+.|.+.++. ++..|....|+++++++-+.++... =+|.||-|+|++..
T Consensus 68 Gev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~ra 136 (153)
T 2wfw_A 68 GEISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKA 136 (153)
T ss_dssp EEEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTT
T ss_pred cCEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCC
Confidence 468899999998 8999999999999999999997632 38999999999853
No 11
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.90 E-value=0.93 Score=37.67 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=38.5
Q ss_pred CcEEEEEEeecCCceE--EEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCC
Q 030718 22 GQSIMQVVSLRGSNLI--EVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESG 73 (172)
Q Consensus 22 ~q~I~rV~~~~G~nl~--eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~ 73 (172)
+-..++|++..|+ +| .|. .+|..+.|.++++||+ .+ .-.||.|.+.+++
T Consensus 5 ~~~~g~v~~~~~~-~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~ 56 (302)
T 2yv5_A 5 ELKRGLVVDREAQ-MIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD 56 (302)
T ss_dssp CCEEEEEEEEETT-EEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE
T ss_pred CceeEEEEEeeCC-eEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc
Confidence 4567999988775 45 555 7788999999999996 34 6699999998753
No 12
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=87.52 E-value=1 Score=32.87 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=43.4
Q ss_pred CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE 71 (172)
Q Consensus 20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p 71 (172)
.....||.|++..+.+.+.|....|.++++.+.+...+.- ++.|+-|.+..
T Consensus 35 ~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~ 85 (109)
T 2wg5_A 35 SPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEE-LKPGARVALNQ 85 (109)
T ss_dssp SCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTT-CCTTCEEEEET
T ss_pred CCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHH-CCCCCEEEECC
Confidence 4578999999999999999999999999999988887544 67777777764
No 13
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=83.01 E-value=3.4 Score=28.92 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE 71 (172)
Q Consensus 20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p 71 (172)
..++.||.|++..+.+.+.|....|.++++.+.+...+.- ++.|+-|.+..
T Consensus 16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~ 66 (85)
T 3h43_A 16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDD-LAPGKRVCLNQ 66 (85)
T ss_dssp SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGG-CCTTCEEEECT
T ss_pred CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHH-CCCCCEEEECC
Confidence 4578999999999999999999999999999998877543 48888888874
No 14
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=81.58 E-value=6.7 Score=28.74 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=37.6
Q ss_pred EEEEeecCC-ceEEEEeCCCCEEEEE---eeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHH
Q 030718 26 MQVVSLRGS-NLIEVLDAKDEKSLAL---FPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQ 101 (172)
Q Consensus 26 ~rV~~~~G~-nl~eV~~~dG~~~L~~---iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lr 101 (172)
+||++..+. +.-.| ...|.+|-++ +|.- ++.||||||-. |-.+.++..++++...
T Consensus 28 ~kVveI~~~~~~A~V-d~~Gv~reV~l~Lv~e~------~~vGDyVLVHv--------------GfAi~kIDeeeA~etl 86 (103)
T 3d3r_A 28 SQVVAVDNERQSVTV-DTLGVRRDVSSHLMTEP------LAIGDYVLIHI--------------GFVMNKIDRNDALQSL 86 (103)
T ss_dssp EEEEEEETTTTEEEE-EETTEEEEEECTTBSSC------CCTTCEEEEEE--------------EEEEEEECHHHHHHHH
T ss_pred EEEEEEeCCCCEEEE-EcCCEEEEEEEEeecCC------CCCCCEEEEee--------------chhhhhCCHHHHHHHH
Confidence 567777654 44444 5568887776 4531 45799999984 6677888988776653
No 15
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=77.65 E-value=10 Score=26.03 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=35.6
Q ss_pred EEEEeecCCceEEEEeCCCCEEEEE---eeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHH
Q 030718 26 MQVVSLRGSNLIEVLDAKDEKSLAL---FPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL 100 (172)
Q Consensus 26 ~rV~~~~G~nl~eV~~~dG~~~L~~---iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~L 100 (172)
+||++. +++.-.| ...|.+|-++ +|. ++.||||||.. |-.+.++..++.+..
T Consensus 7 ~kVvei-~~~~A~v-d~~Gv~r~V~l~Lv~~-------~~vGD~VLVH~--------------GfAi~~ideeeA~et 61 (75)
T 2z1c_A 7 GKVIEV-NGPVAVV-DFGGVKREVRLDLMPD-------TKPGDWVIVHT--------------GFAIEKLDEKKAMEI 61 (75)
T ss_dssp EEEEEE-ETTEEEE-EETTEEEEEECTTSTT-------CCTTCEEEEET--------------TEEEEEECHHHHHHH
T ss_pred EEEEEE-CCCEEEE-EcCCEEEEEEEEEeCC-------CCCCCEEEEec--------------chhhhhCCHHHHHHH
Confidence 577777 4455555 4578888776 443 36899999994 455667788876654
No 16
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.83 E-value=5.7 Score=33.39 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred cEEEEEEeec-CCceEEEEeCCCCEEEEEeeccccceE----------------EEeeCCEEEEecCC
Q 030718 23 QSIMQVVSLR-GSNLIEVLDAKDEKSLALFPAKFQKSM----------------WIKRGSFVVVDESG 73 (172)
Q Consensus 23 q~I~rV~~~~-G~nl~eV~~~dG~~~L~~iP~KfRK~v----------------WIkrGD~VlV~p~~ 73 (172)
-.|+.|...+ ++.+..|....|+.+++++-+.+...- =++.||-|+|++..
T Consensus 159 Gev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~ra 226 (251)
T 3m9b_A 159 GEISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKA 226 (251)
T ss_dssp SEEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTTT
T ss_pred ccEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCCC
Confidence 4688888998 778999999999999999988886530 37999999999854
No 17
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=71.86 E-value=3.5 Score=32.24 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=35.5
Q ss_pred EEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEe
Q 030718 26 MQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVD 70 (172)
Q Consensus 26 ~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~ 70 (172)
+.|+.. +.+.+.+.+..|.-.+..+..=++-+-|++.|.||.|-
T Consensus 65 G~VV~~-~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~ 108 (150)
T 3mxn_B 65 GRVVMA-DRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVM 108 (150)
T ss_dssp EEEEEE-ETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEE
T ss_pred eEEEEe-CCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEE
Confidence 667775 77889999999976666666666778899999999985
No 18
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=69.21 E-value=8.2 Score=30.31 Aligned_cols=28 Identities=11% Similarity=-0.068 Sum_probs=24.5
Q ss_pred EEEEEeecCCceEEEEeCCCCEEEEEee
Q 030718 25 IMQVVSLRGSNLIEVLDAKDEKSLALFP 52 (172)
Q Consensus 25 I~rV~~~~G~nl~eV~~~dG~~~L~~iP 52 (172)
-++|.+.+|+++|+|..-||....++.+
T Consensus 27 pG~V~~~~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 27 SGKITRDVGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp EEEEEECCTTTEEEEECTTSCEEEEETT
T ss_pred ccEEEEeccCCEEEEEEcCCCeeEeecc
Confidence 4789999999999999999988877644
No 19
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=68.99 E-value=20 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=22.2
Q ss_pred EEEEEeecCCceEEEEeCCCCEEEEE
Q 030718 25 IMQVVSLRGSNLIEVLDAKDEKSLAL 50 (172)
Q Consensus 25 I~rV~~~~G~nl~eV~~~dG~~~L~~ 50 (172)
-++|++-+|+++|.|..-||.+..+.
T Consensus 23 pG~V~~~~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 23 SGKITRDVGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp EEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccEEEEeccCCeEEEEEcCCCeeEee
Confidence 46777889999999999999888663
No 20
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=67.50 E-value=18 Score=25.63 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=37.6
Q ss_pred EEEEEeecCCceEEEEeCCCCEEEEEeecc--c--cceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHH
Q 030718 25 IMQVVSLRGSNLIEVLDAKDEKSLALFPAK--F--QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL 100 (172)
Q Consensus 25 I~rV~~~~G~nl~eV~~~dG~~~L~~iP~K--f--RK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~L 100 (172)
-+||++..+++ -+....|.+|-++|--= - --- ++.||||||.. |-.+.++..++.+..
T Consensus 6 P~kVvei~~~~--A~Vd~~Gv~r~V~l~Lv~~~~~~~~--~~vGD~VLVH~--------------GfAi~~ideeeA~et 67 (90)
T 2ot2_A 6 PGQIRTIDGNQ--AKVDVCGIQRDVDLTLVGSCDENGQ--PRVGQWVLVHV--------------GFAMSVINEAEARDT 67 (90)
T ss_dssp EEEEEEECSSE--EEEECSSSEEEEECTTTCSBCTTSC--BCTTCEEEEET--------------TEEEEEECHHHHHHH
T ss_pred ceEEEEEcCCc--EEEEcCCeEEEEEEeeeeccCCCCC--CCCCCEEEEec--------------ChhhhhCCHHHHHHH
Confidence 47888887764 44456788887774210 0 001 45799999994 455677888877654
No 21
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=62.50 E-value=12 Score=27.41 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=25.9
Q ss_pred EEEEEEeecCCceEEEEeCCCCEEEEEeec
Q 030718 24 SIMQVVSLRGSNLIEVLDAKDEKSLALFPA 53 (172)
Q Consensus 24 ~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~ 53 (172)
.|+||.+..| +.+.+.|+||....+.++.
T Consensus 23 ivGkV~~~~g-~~~~l~s~d~~~Vtv~l~~ 51 (114)
T 4gop_A 23 IVGKVHKVTG-NTLLMQTSDLGNVEIAMTP 51 (114)
T ss_dssp EEEEEEEEET-TEEEEECTTSCEEEEECCS
T ss_pred EEEEEeeeCC-CEEEEEeCCCCEEEEEeCC
Confidence 6899999998 8999999999988888764
No 22
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=53.59 E-value=15 Score=30.86 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=45.7
Q ss_pred CCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeecccc-------ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718 19 LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQ-------KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV 91 (172)
Q Consensus 19 p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfR-------K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v 91 (172)
-..-..|+.|++..+.+...|. ..|.++++.+...+. -+|.++ -.|+||+.-++ .+.|+|+.+
T Consensus 95 ~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~--------E~~Gev~tv 164 (251)
T 3m9b_A 95 GQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTF--------EAVGEISTL 164 (251)
T ss_dssp HSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCC--------CCCSEEEEE
T ss_pred cCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCC--------CCcccEEEE
Confidence 3456899999999999999999 588889998877543 357774 47788876543 245666655
No 23
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=51.34 E-value=17 Score=28.67 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.5
Q ss_pred eEEEeeCCEEEEecCC
Q 030718 58 SMWIKRGSFVVVDESG 73 (172)
Q Consensus 58 ~vWIkrGD~VlV~p~~ 73 (172)
-+=|+.||||||...+
T Consensus 36 ~~~i~vGd~VLI~~~D 51 (163)
T 4dov_A 36 EIHIKVGQFVLIQGED 51 (163)
T ss_dssp EEEEETTCEEEECCSS
T ss_pred CeEEeeCCEEEEeCCc
Confidence 4669999999999765
No 24
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.06 E-value=32 Score=30.35 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718 19 LQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE 71 (172)
Q Consensus 19 p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p 71 (172)
-+.++.|+.|++..+.+.+-|....|.++++.+.....+.. ++.|+.|.+..
T Consensus 66 ~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~-l~~~~~v~l~~ 117 (405)
T 4b4t_J 66 QEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKD-LKASQRVCLRS 117 (405)
T ss_dssp CCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTTT-CCSSCEEEEET
T ss_pred cCCCceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHhh-CCCcceeeeec
Confidence 34589999999999999999999999999999887665432 46777777654
No 25
>3tnd_B Antitoxin VAPB; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=50.14 E-value=19 Score=25.15 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=22.9
Q ss_pred EeCCCCEEEEEeecccc-----ceEEEe-eCCEEEEec
Q 030718 40 LDAKDEKSLALFPAKFQ-----KSMWIK-RGSFVVVDE 71 (172)
Q Consensus 40 ~~~dG~~~L~~iP~KfR-----K~vWIk-rGD~VlV~p 71 (172)
..-+|...-++||.-|+ +.|.|+ .|+-||+.|
T Consensus 11 ~f~nG~SQAVRLPke~~f~~~v~eV~I~r~G~~iIL~P 48 (81)
T 3tnd_B 11 VFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITP 48 (81)
T ss_dssp EEECSSSEEEEECGGGCCCTTCCSEEEEEETTEEEEEE
T ss_pred EeEeCCeeeEECCeeEeeCCCCcEEEEEEECCEEEEec
Confidence 34578889999999998 345654 466666665
No 26
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=49.85 E-value=15 Score=29.41 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=34.0
Q ss_pred eecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhCCCCchhhhc
Q 030718 51 FPAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKS 112 (172)
Q Consensus 51 iP~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F~~ 112 (172)
||+|+. -+||| ..||++|.. |++ ++++|..-|+..|.=|.+|.-
T Consensus 141 iptki~~G~I~i-~~d~~v~k~---------G~~--------v~~~~A~lL~~l~i~p~~~~l 185 (213)
T 3jsy_A 141 IPAAIEKGKIAI-KEDKVVVKK---------GEV--------VSPKLAAVLDRLGIKPIKVGL 185 (213)
T ss_dssp CCEEEETTEEEE-CSCEEEECT---------TSB--------CCHHHHHHHHHTTCCCEEESC
T ss_pred CceEeecCeEEE-ccceEEEec---------CCC--------cCHHHHHHHHHcCCCcEEEEE
Confidence 455554 46888 678888874 654 699999999999999999964
No 27
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.38 E-value=31 Score=30.60 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=41.8
Q ss_pred CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE 71 (172)
Q Consensus 20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p 71 (172)
+.++.|+.|++.++.+.+.|....|.++++.+.+.+.+.. ++.|+.|.+..
T Consensus 100 ~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~-l~~g~~v~~~~ 150 (437)
T 4b4t_L 100 SIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSK-LKKGVRVTLDI 150 (437)
T ss_dssp SCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTS-CCTTCEEEECS
T ss_pred cCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhh-cCCCceeeEcc
Confidence 4578999999999999999999999999999988775432 46677777664
No 28
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.25 E-value=18 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=32.9
Q ss_pred eecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhCCCCchhhh
Q 030718 51 FPAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111 (172)
Q Consensus 51 iP~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F~ 111 (172)
||+|+. -+||| ..||+||.. |++ ++..|..-|++.|+=|..|.
T Consensus 145 iptki~~G~I~i-~~d~~v~k~---------G~~--------v~~~~A~lL~~l~i~p~~~~ 188 (339)
T 3j21_k 145 IPARIERGKVTI-QKDTVVLKA---------GEE--------ITPELANILNALGIQPLEVG 188 (339)
T ss_dssp CCEEEETTEEEE-CSCEEEECT---------TSB--------CCHHHHHHHHHHTCCCSCCS
T ss_pred CCeEeccCeEEE-ccceEEEec---------CCC--------cCHHHHHHHHHcCCCcEEee
Confidence 566665 47888 678888874 554 58899999999999888884
No 29
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=41.23 E-value=28 Score=26.24 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=27.3
Q ss_pred eecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 51 FPAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 51 iP~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
|+.|+. +++-|+.||-|+|-...+ .| + .|.|+.||.+.
T Consensus 39 Lr~ky~vrs~~IkkgD~V~Vi~Gkd-----KG-k-~GkV~~V~~kk 77 (127)
T 3u5e_Y 39 LRAQYGIKALPIRRDDEVLVVRGSK-----KG-Q-EGKISSVYRLK 77 (127)
T ss_dssp HHHHHTCCEEECCTTCEEEECSSTT-----TT-C-EEEEEEEEGGG
T ss_pred HHHHhCcCcccccCCCEEEEeecCC-----CC-c-cceEEEEECCC
Confidence 334443 568899999999986432 34 3 59999999865
No 30
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.18 E-value=13 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCc-EEEEEEeecCCceEEEEeCCCCEE------EEEeeccccceEEE
Q 030718 21 DGQ-SIMQVVSLRGSNLIEVLDAKDEKS------LALFPAKFQKSMWI 61 (172)
Q Consensus 21 e~q-~I~rV~~~~G~nl~eV~~~dG~~~------L~~iP~KfRK~vWI 61 (172)
+|+ --|+|.+..+++.+.|...|+.+- |..||...+++.|+
T Consensus 22 Dg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~~k~~~~~ 69 (74)
T 2equ_A 22 DCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQDWI 69 (74)
T ss_dssp SSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGGGTCCCCT
T ss_pred CCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChhHhhchHH
Confidence 455 357777788878899999998333 34577777776664
No 31
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=39.16 E-value=21 Score=30.50 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=33.4
Q ss_pred eeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhCCCCchhhh
Q 030718 51 FPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111 (172)
Q Consensus 51 iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F~ 111 (172)
||+|+.| +||| ..||+||.. |++ ++.+|..-|++.|+=|.+|.
T Consensus 146 iptkI~kG~I~I-~~d~~v~k~---------G~~--------v~~~~A~lL~~l~i~p~~f~ 189 (319)
T 3iz5_s 146 IPTKINKGTVEI-ITPVELIKK---------GDK--------VGSSESALLAKLGIRPFSYG 189 (319)
T ss_dssp CCEEEETTEEEE-CSCEEEECT---------TSB--------CCHHHHHHHHHHTCCCEEES
T ss_pred CceEEecCeEEE-cCceEEEec---------CCC--------cCHHHHHHHHHhCCCceEEE
Confidence 6677654 6888 678888874 554 58899999999999888884
No 32
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=37.65 E-value=33 Score=26.19 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=27.4
Q ss_pred eecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 51 FPAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 51 iP~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
|+.|+. +++=|+.||-|+|-...+ .| + .|.|+.||.+.
T Consensus 38 Lr~ky~vRs~~IkkgD~V~Vi~Gkd-----KG-k-~GkV~~V~~kk 76 (135)
T 4a17_S 38 LRSKYNVRSMPVRKDDEVLIVRGKF-----KG-N-KGKVTQVYRKK 76 (135)
T ss_dssp HHHHHTCSEEECCTTCEEEECSSTT-----TT-C-EEEEEEEETTT
T ss_pred HHHHhCCCcccccCCCEEEEeecCC-----CC-c-eeeEEEEEcCC
Confidence 344443 578899999999986432 34 3 59999999865
No 33
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.33 E-value=37 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=26.2
Q ss_pred ecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 52 PAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 52 P~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
..||. +++=|+.||-|+|-...+ .| | .|.|+.||.+.
T Consensus 36 R~ky~~r~~~IkkGD~V~Vi~Gkd-----KG-k-~GkV~~V~~k~ 73 (121)
T 3j21_U 36 REKYKVRNLPVRVGDKVRIMRGDY-----KG-H-EGKVVEVDLKR 73 (121)
T ss_dssp HHHTCCSEEECCSSSEEEECSSSC-----SS-E-EEEEEEEETTT
T ss_pred HHHhCCcccccccCCEEEEeecCC-----CC-c-EeEEEEEEecC
Confidence 33443 568899999999985431 33 4 69999999765
No 34
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=35.95 E-value=62 Score=23.72 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=37.7
Q ss_pred EEEEEEeecC-CceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718 24 SIMQVVSLRG-SNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL 92 (172)
Q Consensus 24 ~I~rV~~~~G-~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl 92 (172)
.++||.+..+ +..+.+.|.||.+..+.++.-.- -.+ +.||-|-=- -..+..+++...--+
T Consensus 27 ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~--~~l--~~~vEViG~-----V~~~~tI~~~~~~~f 87 (121)
T 3kdf_A 27 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD--EEI--SGIVEVVGR-----VTAKATILCTSYVQF 87 (121)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCCS--SCC--CSEEEEEEE-----ECTTSCEEEEEEEEC
T ss_pred EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC--ccc--CcEEEEEEE-----ECCCCeEEEEEEEec
Confidence 5788888874 66899999999999999886332 122 346555310 112345777764433
No 35
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=35.89 E-value=61 Score=21.72 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=24.6
Q ss_pred CCCcE-EEEEEeecCCceEEEEeCCCCEEEEE
Q 030718 20 QDGQS-IMQVVSLRGSNLIEVLDAKDEKSLAL 50 (172)
Q Consensus 20 ~e~q~-I~rV~~~~G~nl~eV~~~dG~~~L~~ 50 (172)
.+++- =|+|.+..|+..|.|..-||.+..+.
T Consensus 18 ~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk 49 (67)
T 3p8d_A 18 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVK 49 (67)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCceEEEe
Confidence 34443 47889999999999999998887765
No 36
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.34 E-value=52 Score=29.38 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=41.3
Q ss_pred CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE 71 (172)
Q Consensus 20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p 71 (172)
....+|+.|+...+.+.+.|..+.|.++++.+-+.+-+.. ++.|+.|.+..
T Consensus 101 ~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~-l~~~~~v~l~~ 151 (437)
T 4b4t_I 101 GNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKEL-LEPGCSVLLHH 151 (437)
T ss_dssp CSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGG-CCTTCEEEECT
T ss_pred CCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhH-ccCCcEEEEec
Confidence 4467999999999999999999999999999887665432 46677777654
No 37
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=35.31 E-value=29 Score=25.47 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=22.8
Q ss_pred eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 58 SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 58 ~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
++=|++||-|.|-... ..| | .|.|+.||.+.
T Consensus 4 k~~IkkGD~V~Vi~Gk-----dKG-k-~GkV~~V~~~~ 34 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGK-----YKG-R-VGKVKEVLPKK 34 (110)
T ss_dssp CCSCCTTSEEEECSST-----TTT-C-EEEEEEEEGGG
T ss_pred ccccCCCCEEEEeEcC-----CCC-e-EeEEEEEECCC
Confidence 3449999999997532 234 3 69999999875
No 38
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=35.10 E-value=49 Score=25.07 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=36.6
Q ss_pred EEEEEEee--cCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718 24 SIMQVVSL--RGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV 91 (172)
Q Consensus 24 ~I~rV~~~--~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v 91 (172)
+++||++. .| +.+.+.|.||.+..|.++.-+ +.-.+.||-|-=. ...+..+++...--
T Consensus 48 iVGkV~~~~~~G-~~~~l~s~Dg~~VtV~l~~pL----~~~~~~~VEViG~-----V~~~~tI~~~~~~~ 107 (142)
T 2pi2_E 48 FVGRLEKIHPTG-KMFILSDGEGKNGTIELMEPL----DEEISGIVEVVGR-----VTAKATILCTSYVQ 107 (142)
T ss_dssp EEEEEEEECTTS-SEEEEECTTSCEEEEECSSCC----SSCCCSEEEEEEE-----ECTTSCEEEEEEEE
T ss_pred EEEEEeEEcCCC-CEEEEEeCCCcEEEEEeCCCC----CccCCCEEEEEEE-----ECCCCcEEEEEEEe
Confidence 57777777 45 778999999999999987532 2223666655411 11234566666433
No 39
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=34.45 E-value=39 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=27.7
Q ss_pred eecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 51 FPAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 51 iP~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
|+.|+. +++=|+.||-|+|-...+ .| | .|.|+.||.+.
T Consensus 38 LR~ky~vRs~~IkKGD~V~Vi~Gkd-----KG-k-~GkVl~V~~kk 76 (150)
T 3iz5_Y 38 LRHKYNVRSIPIRKDDEVQVVRGSY-----KG-R-EGKVVQVYRRR 76 (150)
T ss_dssp HHTTTTCSEEECCSSSEEEECSSTT-----TT-C-EEEEEEEETTT
T ss_pred HHHHhCCcccccCCCCEEEEeecCC-----CC-c-cceEEEEEcCC
Confidence 445553 678999999999986432 34 3 59999999864
No 40
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=33.01 E-value=44 Score=24.86 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=24.4
Q ss_pred ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 57 KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 57 K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
+++=|+.||.|.|--..+ .| -.|.|+.|+.+.
T Consensus 39 r~~~IkkGD~V~Vi~G~d-----KG--k~GkV~~V~~k~ 70 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDF-----AG--EEGEVINVDLDK 70 (120)
T ss_dssp SEEECCTTCEEEECSSTT-----TT--CEEEEEEEETTT
T ss_pred ccccccCCCEEEEEecCC-----CC--CEEEEEEEECCC
Confidence 457799999999986432 34 469999999765
No 41
>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.243.1.2 PDB: 2a8k_A 3ao9_A 2dfx_E 2djh_A* 3vj7_A*
Probab=30.89 E-value=23 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.9
Q ss_pred eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 58 SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 58 ~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
.++.+-|+||+|.- ..|+|+.|-.+.
T Consensus 65 t~Y~~~g~YVVvnd------------rtGeivQiS~k~ 90 (108)
T 2fhz_B 65 TVYGSPGKYVVVND------------RTGEVTQISDKT 90 (108)
T ss_dssp EEEEETTEEEEEET------------TTCBEEEECCTT
T ss_pred eEecCCCCEEEEeC------------CCccEEEeccCC
Confidence 58999999999983 258899886654
No 42
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.53 E-value=82 Score=22.12 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=24.6
Q ss_pred CCCcE-EEEEEeecCCceEEEEeCCCCEEEEE
Q 030718 20 QDGQS-IMQVVSLRGSNLIEVLDAKDEKSLAL 50 (172)
Q Consensus 20 ~e~q~-I~rV~~~~G~nl~eV~~~dG~~~L~~ 50 (172)
.+++. =|+|++..|+..|.|..-||.+..+.
T Consensus 33 ~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk 64 (85)
T 3qii_A 33 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVK 64 (85)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEE
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCCeEEec
Confidence 34553 47899999999999999998877664
No 43
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=28.99 E-value=50 Score=20.54 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCcEEEEEEee-cCCceEEE--EeCCCCEEEEEeeccccceEEEeeCCEEEEe
Q 030718 21 DGQSIMQVVSL-RGSNLIEV--LDAKDEKSLALFPAKFQKSMWIKRGSFVVVD 70 (172)
Q Consensus 21 e~q~I~rV~~~-~G~nl~eV--~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~ 70 (172)
.++.-++|.+. .|+...+| .+.+|....+.|+..--..+=++.|+-|.+.
T Consensus 6 rN~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ 58 (68)
T 1gut_A 6 RNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAV 58 (68)
T ss_dssp SCEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEE
T ss_pred ceEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEE
Confidence 36766777765 34444444 4556888889998665555667888877776
No 44
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=26.94 E-value=1.7e+02 Score=20.85 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=33.2
Q ss_pred cCCceEEEEeCCCCEEEEEeec------cccceEEEeeCCEEEEe-cCCcchhhcCCCeeeEEEEEEeC
Q 030718 32 RGSNLIEVLDAKDEKSLALFPA------KFQKSMWIKRGSFVVVD-ESGKEKAIKDGSKVACIVTKVLF 93 (172)
Q Consensus 32 ~G~nl~eV~~~dG~~~L~~iP~------KfRK~vWIkrGD~VlV~-p~~~~~~~e~~~KvkgeIv~vl~ 93 (172)
.|+-+|.|..-| .-++-.|++ .|-+-+.|.-|++++|. |+ -++-+|.|+|+.-..
T Consensus 7 ~gGkQykV~~Gd-~i~vekl~~~~G~~v~~~~VLlv~~~~~~~iG~P~------v~~a~V~a~V~~~~k 68 (103)
T 3r8s_R 7 SGGKQHRVSEGQ-TVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPF------VDGGVIKAEVVAHGR 68 (103)
T ss_dssp CSSSEEEEETTC-EEEESCCCSCTTCEEEECCEEEEESSSEEECSSSS------CTTCEEEEEEEEEEE
T ss_pred ECCEEEEEeCCC-EEEECCcCCCCCCEEEEeEEEEEecCCCEEECCcc------cCCcEEEEEEEeccC
Confidence 466677776443 111112433 34566777778888876 43 347789999986543
No 45
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=25.18 E-value=69 Score=23.25 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=34.2
Q ss_pred EEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEe
Q 030718 25 IMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVD 70 (172)
Q Consensus 25 I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~ 70 (172)
=+.|++.+|...|...+..| +..+.|+.+.-.-.=|..++-|-+.
T Consensus 43 ~G~Iv~~~~~d~Y~F~D~TG-~I~VeId~~~w~g~~v~p~~~Vri~ 87 (109)
T 1nnx_A 43 RGNIVERISDDLYVFKDASG-TINVDIDHKRWNGVTVTPKDTVEIQ 87 (109)
T ss_dssp EEEEEEEEETTEEEEEETTE-EEEEECCGGGSTTCCCCTTSCEEEE
T ss_pred EEEEEEEeCCCeEEEECCCc-cEEEEEChhhcCCcccCCCCEEEEE
Confidence 47899999999999999999 6788998775444445566665554
No 46
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.01 E-value=15 Score=31.40 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhCCCCchhh
Q 030718 48 LALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110 (172)
Q Consensus 48 L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F 110 (172)
-.-||+|+.| +||| ..||+||.. |++ ++.+|..-|++.|.=|-.|
T Consensus 140 ~LgipTkI~kG~I~i-~~d~~v~k~---------G~~--------v~~~~A~lL~~l~i~p~~~ 185 (317)
T 2zkr_g 140 ALGITTKISRGTIEI-LSDVQLIKT---------GDK--------VGASEATLLNMLNISPFSF 185 (317)
T ss_dssp ----------------------------------------------------------------
T ss_pred HcCCCeEeeCCeEEE-ecceEEecC---------CCC--------cCHHHHHHHHHcCCCceee
Confidence 3457888775 5777 567777763 544 4566666676666666666
No 47
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=24.85 E-value=1.2e+02 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE 71 (172)
Q Consensus 20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p 71 (172)
+++.+|-...+..|++.+ +..++|-.+...-+|.=.. ++.||+|.|.-
T Consensus 82 ed~d~I~~~~eq~Gg~t~-~~~~sGl~~~vl~~G~G~~---~~~gd~V~v~Y 129 (209)
T 3uf8_A 82 EDNDIIEAHREQIGGSTV-VTTESGLKYEDLTEGSGAE---ARAGQTVSVHY 129 (209)
T ss_dssp CTTEEEEEECSCTTCCCC-EECTTSCEEEEEECCCSCB---CCTTCEEEEEE
T ss_pred cccccchhhccccccccc-cCCCCceEEEEEEcCCCCc---CCCCCEEEEEE
Confidence 467899999999998865 4578999998888886544 89999999984
No 48
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=24.76 E-value=95 Score=24.16 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEe
Q 030718 33 GSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVD 70 (172)
Q Consensus 33 G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~ 70 (172)
++.+|.|...|+.+- .+...-=|++=+|.||.|-|+
T Consensus 38 ~~~~y~VrFdDs~~~--~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 38 SSIMYKVQFDDATMS--TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp CBCEEEEEETTSCEE--EEETTSEEESCCCTTCEEEET
T ss_pred CCeEEEEEEcCCCCC--ccChhhceeeeeecCCEEEEC
Confidence 788999999999777 788888899999999999999
No 49
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=24.61 E-value=93 Score=22.55 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=35.9
Q ss_pred cCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhC
Q 030718 32 RGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKS 103 (172)
Q Consensus 32 ~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~ 103 (172)
.|.-.+|+.+.|+ |+++ |+.||.++.. +.++.++|+.|..-++-+.|-+.
T Consensus 17 ~G~KtiEiRlnd~---------k~~~---ikvGD~I~f~----------~~~l~~~V~~v~~Y~sF~~ll~~ 66 (109)
T 2z0t_A 17 AGKKKIEGRLYDE---------KRRQ---IKPGDIIIFE----------GGKLKVKVKGIRVYSSFKEMLEK 66 (109)
T ss_dssp TTSCCEEEEECCT---------TGGG---CCTTCEEEEG----------GGTEEEEEEEEEEESCHHHHHHH
T ss_pred cCCCEEEEEecch---------hhhc---CCCCCEEEEC----------CCEEEEEEEEEEccCCHHHHHHh
Confidence 4777788888886 2222 7899999973 34588999998877776666443
No 50
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=24.55 E-value=38 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=24.1
Q ss_pred cceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718 56 QKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 95 (172)
Q Consensus 56 RK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~ 95 (172)
++++=|++||.|.|-...+ .| -.|.|+.|+.+.
T Consensus 11 ~rkm~IkkGD~V~Vi~Gkd-----KG--k~GkV~~V~~~~ 43 (115)
T 2zjr_R 11 NDKLHFKKGDTVIVLSGKH-----KG--QTGKVLLALPRD 43 (115)
T ss_dssp TSCCSSCTTSEEECCSSSS-----TT--CEEEEEEEETTT
T ss_pred ceeCcccCCCEEEEeEcCC-----CC--cEEEEEEEECCC
Confidence 3455699999999875332 34 369999999765
No 51
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.15 E-value=1.1e+02 Score=26.88 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=40.3
Q ss_pred CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEe
Q 030718 20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVD 70 (172)
Q Consensus 20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~ 70 (172)
.....|+.|++....+.+.|....|.++++.+...+-+.. ++.|+-|.+.
T Consensus 91 ~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~-~~~~~~v~~~ 140 (428)
T 4b4t_K 91 SVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDREL-LKPSMSVALH 140 (428)
T ss_dssp CSCEEEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTT-CCTTCEEEEC
T ss_pred CCCceeeEEEEEccCCeeEEecCCCCEEEEeccccccHhh-CCCCceeeee
Confidence 3568899999999999999999999999999998886543 4566655554
No 52
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A
Probab=23.74 E-value=49 Score=28.44 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=29.2
Q ss_pred eEEEEeCCCCEEEEEeeccccceEEEee---CCEEEEe
Q 030718 36 LIEVLDAKDEKSLALFPAKFQKSMWIKR---GSFVVVD 70 (172)
Q Consensus 36 l~eV~~~dG~~~L~~iP~KfRK~vWIkr---GD~VlV~ 70 (172)
.|+|+++.--.-|++|.+.+.++.|.+. |++|+.+
T Consensus 44 ~~eve~~k~~~g~vhIR~~~n~kyW~R~~~~~~wIvA~ 81 (303)
T 1jlx_A 44 QFEVEPSKTYDGLVHIKSRYTNKYLVRWSPNHYWITAS 81 (303)
T ss_dssp CEEEEECSSSTTCEEEEETTTCCEEEESSTTCCBEEEE
T ss_pred cEEEEEeecCCCEEEEEecCCCceeeecCCCCceEEec
Confidence 7999998766678999999999999993 5667666
No 53
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=22.78 E-value=18 Score=31.45 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred Eeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhCCCCchhh
Q 030718 50 LFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110 (172)
Q Consensus 50 ~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F 110 (172)
-||+|+.| +||| ..||+||.. |++ +++.|..-|++.|.=|..|
T Consensus 146 gIPTkI~kG~I~I-~~d~~v~k~---------G~~--------v~~~~A~LL~~LgI~p~~f 189 (348)
T 1vq8_G 146 GADARIQEGSIQV-LSDSTVLDT---------GEE--------VSQELSNVLNELGIEPKEV 189 (348)
T ss_dssp --------------------------------------------------------------
T ss_pred CCCEEeccCceEe-cCceEEeeC---------CCC--------cCHHHHHHHHHcCCCceee
Confidence 46777764 5777 457777763 544 3566666666666666666
No 54
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=22.70 E-value=11 Score=26.54 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEeeccccceEEEeeCCEEEEe
Q 030718 49 ALFPAKFQKSMWIKRGSFVVVD 70 (172)
Q Consensus 49 ~~iP~KfRK~vWIkrGD~VlV~ 70 (172)
+.||..+|+.+=|+.||+|.|.
T Consensus 17 vtiP~~iR~~LgI~~GD~V~v~ 38 (92)
T 2glw_A 17 IIIPAGTRKFYGIEQGDFVEIK 38 (92)
T ss_dssp EECCHHHHHHHTCCTTCEEEEE
T ss_pred EEecHHHHHHcCCCCCCEEEEE
Confidence 5699999999999999999995
No 55
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=22.04 E-value=1.6e+02 Score=23.28 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=17.5
Q ss_pred EEEEEEeec-CCceEEEEeCCCC
Q 030718 24 SIMQVVSLR-GSNLIEVLDAKDE 45 (172)
Q Consensus 24 ~I~rV~~~~-G~nl~eV~~~dG~ 45 (172)
++|+|++-. .++.|+|+++|-.
T Consensus 65 ILa~Vv~~~~~~~rYeV~D~d~e 87 (180)
T 3mea_A 65 ILAEVVSYSHATNKYEVDDIDEE 87 (180)
T ss_dssp EEEEEEEEETTTTEEEEEECCTT
T ss_pred EEEEEEEEcCCCCEEEEecCCCC
Confidence 678888855 4799999999843
No 56
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=21.16 E-value=20 Score=30.56 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=0.4
Q ss_pred EEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhCCCCchhhh
Q 030718 49 ALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111 (172)
Q Consensus 49 ~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F~ 111 (172)
.-||+|+.| +||| ..||+||.. |++ ++.+|..-|++.|+=|-.|.
T Consensus 139 Lgiptki~kG~I~I-~~d~~v~k~---------G~~--------v~~~~A~lL~~l~i~p~~~~ 184 (312)
T 3u5i_q 139 LGVPTKIARGTIEI-VSDVKVVDA---------GNK--------VGQSEASLLNLLNISPFTFG 184 (312)
T ss_dssp ---------------------------------------------------------------C
T ss_pred cCCCeEeeCCEEEE-ccceEEEeC---------CCC--------cCHHHHHHHHHcCcCcEEEE
Confidence 457888764 5777 567777763 544 46777777888887777773
No 57
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=21.10 E-value=3.4e+02 Score=22.33 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.0
Q ss_pred EeecCCceEEEEeCCCCEEEEEeecc
Q 030718 29 VSLRGSNLIEVLDAKDEKSLALFPAK 54 (172)
Q Consensus 29 ~~~~G~nl~eV~~~dG~~~L~~iP~K 54 (172)
..+-|++.+.+.++..-+.+.+|+-.
T Consensus 149 ~vSdGs~~l~~iDp~T~~v~~~I~V~ 174 (268)
T 3nok_A 149 VRSDGGTMLTFHEPDGFALVGAVQVK 174 (268)
T ss_dssp EEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEECCCCEEEEEcCCCCeEEEEEEeC
Confidence 33458999999999887788877763
No 58
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=20.73 E-value=1.9e+02 Score=23.26 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=23.9
Q ss_pred EEEEEeecCCceEEEEeCC-CCEEEEEeecccc
Q 030718 25 IMQVVSLRGSNLIEVLDAK-DEKSLALFPAKFQ 56 (172)
Q Consensus 25 I~rV~~~~G~nl~eV~~~d-G~~~L~~iP~KfR 56 (172)
.++|++..| +.|.|.+.+ |.-..+.+.++|+
T Consensus 12 ~g~v~~~~~-~~~~v~~~~~~sl~~~~~~~~f~ 43 (301)
T 1u0l_A 12 RGIVVSFHS-NMVTVEDEETGERILCKLRGKFR 43 (301)
T ss_dssp EEEEEEEET-TEEEEEETTTCCEEEEEECGGGT
T ss_pred eEEEEEeeC-CEEEEEEcCCCcEEEEEEccccc
Confidence 688887776 566787666 7777888888887
Done!