Query 030719
Match_columns 172
No_of_seqs 187 out of 644
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02519 Auxin_inducible: Auxi 100.0 9E-35 1.9E-39 218.6 9.9 67 68-134 34-100 (100)
2 PLN03090 auxin-responsive fami 100.0 1.1E-33 2.4E-38 214.6 11.1 68 66-133 36-103 (104)
3 PLN03220 uncharacterized prote 100.0 1.6E-31 3.4E-36 202.9 10.2 66 66-131 31-101 (105)
4 PLN03219 uncharacterized prote 100.0 7.7E-31 1.7E-35 200.0 10.0 68 65-132 34-104 (108)
5 PF02214 BTB_2: BTB/POZ domain 87.9 0.53 1.1E-05 33.5 2.7 58 77-136 3-63 (94)
6 PRK02899 adaptor protein; Prov 84.0 0.95 2E-05 37.8 2.8 25 95-119 38-62 (197)
7 PRK02315 adaptor protein; Prov 78.0 1.8 3.9E-05 36.9 2.5 25 95-119 38-62 (233)
8 smart00666 PB1 PB1 domain. Pho 72.6 6.9 0.00015 26.9 3.9 53 78-135 7-70 (81)
9 PF05389 MecA: Negative regula 71.4 1.3 2.8E-05 36.8 0.0 25 95-119 38-62 (220)
10 cd05992 PB1 The PB1 domain is 66.7 18 0.00039 24.6 5.0 55 77-135 5-70 (81)
11 PRK07735 NADH dehydrogenase su 54.6 30 0.00066 32.6 5.6 73 92-165 272-357 (430)
12 cd06407 PB1_NLP A PB1 domain i 43.5 43 0.00093 24.2 3.9 49 77-129 5-65 (82)
13 PF14317 YcxB: YcxB-like prote 38.6 71 0.0015 19.9 4.0 34 70-104 27-60 (62)
14 cd06398 PB1_Joka2 The PB1 doma 38.3 75 0.0016 23.4 4.6 54 77-130 5-71 (91)
15 PRK02797 4-alpha-L-fucosyltran 37.4 1.4E+02 0.0031 27.2 7.0 66 69-137 141-228 (322)
16 PF00651 BTB: BTB/POZ domain; 36.6 80 0.0017 21.9 4.4 58 75-137 13-75 (111)
17 PF02209 VHP: Villin headpiece 34.7 15 0.00032 23.1 0.2 19 92-110 1-19 (36)
18 PF11834 DUF3354: Domain of un 33.8 31 0.00067 24.5 1.8 17 96-112 26-42 (69)
19 smart00153 VHP Villin headpiec 33.6 17 0.00037 22.8 0.4 18 92-109 1-18 (36)
20 PF00564 PB1: PB1 domain; Int 32.9 1.1E+02 0.0023 20.8 4.5 55 77-135 6-71 (84)
21 cd06401 PB1_TFG The PB1 domain 32.4 84 0.0018 23.2 3.9 41 80-123 8-62 (81)
22 PF07369 DUF1488: Protein of u 30.8 91 0.002 21.8 3.9 20 74-93 18-37 (83)
23 cd06410 PB1_UP2 Uncharacterize 30.8 91 0.002 23.3 4.0 46 76-125 17-75 (97)
24 PRK10308 3-methyl-adenine DNA 29.5 2E+02 0.0044 25.1 6.6 64 72-135 45-123 (283)
25 PF11822 DUF3342: Domain of un 26.9 93 0.002 28.3 4.1 52 83-137 13-69 (317)
26 COG4862 MecA Negative regulato 25.1 52 0.0011 28.6 2.1 28 93-120 36-63 (224)
27 PF11470 TUG-UBL1: GLUT4 regul 24.9 96 0.0021 21.6 3.0 31 82-114 5-35 (65)
28 PF02100 ODC_AZ: Ornithine dec 24.3 86 0.0019 23.8 2.9 28 92-120 37-64 (108)
29 PF04572 Gb3_synth: Alpha 1,4- 24.0 2.7E+02 0.0059 21.4 5.8 65 94-170 6-70 (135)
30 PRK02079 pyrroloquinoline quin 22.8 39 0.00084 24.8 0.7 15 157-171 22-36 (88)
31 PF08861 DUF1828: Domain of un 22.6 1.8E+02 0.0038 20.8 4.2 39 95-133 44-83 (90)
32 PF05596 Taeniidae_ag: Taeniid 21.1 37 0.00081 23.9 0.4 23 8-30 29-51 (64)
33 cd01785 PDZ_GEF_RA Ubiquitin-l 21.0 1.8E+02 0.0039 21.7 3.9 51 72-125 2-52 (85)
No 1
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=9e-35 Score=218.58 Aligned_cols=67 Identities=48% Similarity=1.001 Sum_probs=65.2
Q ss_pred CCCCCceEEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCCCCeEecCcHHHHHHHHHHHh
Q 030719 68 RVAPEGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSEGPLVLPCRVDVFYRVLLAVD 134 (172)
Q Consensus 68 ~~~pkG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~l~ 134 (172)
..+|+|||+||||++++||+||++|||||+|++||++|||||||+++|+|+||||+++|+++||+|+
T Consensus 34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999999999999999999999999999999999985
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=214.62 Aligned_cols=68 Identities=34% Similarity=0.717 Sum_probs=65.5
Q ss_pred cCCCCCCceEEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCCCCeEecCcHHHHHHHHHHH
Q 030719 66 KRRVAPEGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSEGPLVLPCRVDVFYRVLLAV 133 (172)
Q Consensus 66 ~~~~~pkG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~l 133 (172)
.+.++|+||||||||++++||+||++||+||+|++||++|||||||+++|+|+||||+++|++++|+|
T Consensus 36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 36 LPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 34679999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=202.94 Aligned_cols=66 Identities=42% Similarity=0.860 Sum_probs=61.7
Q ss_pred cCCCCCCceEEEEeCC----CCeeEEEEecccCcHHHHHHHHHHHhhcCcCC-CCCeEecCcHHHHHHHHH
Q 030719 66 KRRVAPEGCFSVYVGP----QKQRFVIKTEYVNHPLFKLLLEEAESEYGFQS-EGPLVLPCRVDVFYRVLL 131 (172)
Q Consensus 66 ~~~~~pkG~~~VYVG~----e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~-~G~L~iPCd~~~Fe~vl~ 131 (172)
.+.+||+||||||||+ |++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++.
T Consensus 31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101 (105)
T ss_pred ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence 4467999999999997 47999999999999999999999999999997 699999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=99.97 E-value=7.7e-31 Score=200.01 Aligned_cols=68 Identities=41% Similarity=0.851 Sum_probs=63.3
Q ss_pred ccCCCCCCceEEEEeCC--CCeeEEEEecccCcHHHHHHHHHHHhhcCcCC-CCCeEecCcHHHHHHHHHH
Q 030719 65 LKRRVAPEGCFSVYVGP--QKQRFVIKTEYVNHPLFKLLLEEAESEYGFQS-EGPLVLPCRVDVFYRVLLA 132 (172)
Q Consensus 65 ~~~~~~pkG~~~VYVG~--e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~-~G~L~iPCd~~~Fe~vl~~ 132 (172)
..+..+|+|||+||||+ |++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|+++|..
T Consensus 34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 35678999999999997 58999999999999999999999999999996 6999999999999999864
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=87.87 E-value=0.53 Score=33.52 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=44.4
Q ss_pred EEeCCCCeeEEEEecccC-c--HHHHHHHHHHHhhcCcCCCCCeEecCcHHHHHHHHHHHhcC
Q 030719 77 VYVGPQKQRFVIKTEYVN-H--PLFKLLLEEAESEYGFQSEGPLVLPCRVDVFYRVLLAVDDH 136 (172)
Q Consensus 77 VYVG~e~~RfvVp~~yL~-h--p~F~eLL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~l~~~ 136 (172)
+=|| +++|.++.+-|. + ..|..|+........-+.+|.+-|-++...|++||.-++.+
T Consensus 3 lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 3 LNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp EEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 4476 699999998877 4 47888887653222334679999999999999999999995
No 6
>PRK02899 adaptor protein; Provisional
Probab=83.97 E-value=0.95 Score=37.76 Aligned_cols=25 Identities=40% Similarity=0.951 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHhhcCcCCCCCeEe
Q 030719 95 HPLFKLLLEEAESEYGFQSEGPLVL 119 (172)
Q Consensus 95 hp~F~eLL~~aeeEfG~~~~G~L~i 119 (172)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcccCCeEEE
Confidence 4578888999999999999999976
No 7
>PRK02315 adaptor protein; Provisional
Probab=77.99 E-value=1.8 Score=36.87 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHhhcCcCCCCCeEe
Q 030719 95 HPLFKLLLEEAESEYGFQSEGPLVL 119 (172)
Q Consensus 95 hp~F~eLL~~aeeEfG~~~~G~L~i 119 (172)
+-+|.++|+++..|+||..+|||++
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4689999999999999999999976
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=72.60 E-value=6.9 Score=26.90 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=38.9
Q ss_pred EeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcC----------CCC-CeEecCcHHHHHHHHHHHhc
Q 030719 78 YVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQ----------SEG-PLVLPCRVDVFYRVLLAVDD 135 (172)
Q Consensus 78 YVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~G-~L~iPCd~~~Fe~vl~~l~~ 135 (172)
+-|++.+||.||- ..-|.+|..+..+.|+.. .+| .++|.++. .++.++.+...
T Consensus 7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~ 70 (81)
T smart00666 7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDS 70 (81)
T ss_pred EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHH
Confidence 3477888999985 777999999999988774 244 68888876 45566665553
No 9
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=71.45 E-value=1.3 Score=36.84 Aligned_cols=25 Identities=44% Similarity=0.860 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCcCCCCCeEe
Q 030719 95 HPLFKLLLEEAESEYGFQSEGPLVL 119 (172)
Q Consensus 95 hp~F~eLL~~aeeEfG~~~~G~L~i 119 (172)
+-.|.++|++|.+|+||..+|||++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 5689999999999999999999986
No 10
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=66.73 E-value=18 Score=24.56 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=39.8
Q ss_pred EEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcC----------CCC-CeEecCcHHHHHHHHHHHhc
Q 030719 77 VYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQ----------SEG-PLVLPCRVDVFYRVLLAVDD 135 (172)
Q Consensus 77 VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~G-~L~iPCd~~~Fe~vl~~l~~ 135 (172)
|+-+++-+||.+|. .++-|.+|..+..+.|++. .+| .++|-++ +.|+.++.....
T Consensus 5 ~~~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 5 VKYGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred EEecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 45555789999997 7888999999998888874 244 4556665 466777776654
No 11
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=54.55 E-value=30 Score=32.62 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=48.1
Q ss_pred ccCcHHHHHHHHHHHhhcCcC----------CCCCeEecCcHHHHHHHHHHHhcCCCcccccccccc---CCCCCCCcce
Q 030719 92 YVNHPLFKLLLEEAESEYGFQ----------SEGPLVLPCRVDVFYRVLLAVDDHDHDHNKEDNFIR---RPGCGFGKGY 158 (172)
Q Consensus 92 yL~hp~F~eLL~~aeeEfG~~----------~~G~L~iPCd~~~Fe~vl~~l~~~~~~~~a~~~~~~---~~~C~~~~~~ 158 (172)
--|+|.|..|++...+.||-. ..|.++|-++.+.+..|+..|..+....-.+|+.+. .++ .|.-.|
T Consensus 272 ~pn~p~l~~l~~~L~e~fg~~i~~~~~i~~~~~d~lti~V~~e~L~eV~~~Lrd~~~l~Fd~LsdLtGVDy~~-rFeVVY 350 (430)
T PRK07735 272 SVNQPYLNKYVEVIKEKLGEDVLEDSYINKLSKDVPTLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFVT-HMEVYV 350 (430)
T ss_pred CCCchHHHHHHHHHHHHhhhhhhhhhhhccccCCceEEEEcHHHHHHHHHHHHhCcccCCCeeeeEEeEecCC-cEEEEE
Confidence 346999999999999998732 236788999999999999888876432111233332 111 233348
Q ss_pred eecCCCC
Q 030719 159 RLLSPSP 165 (172)
Q Consensus 159 ~l~~~~~ 165 (172)
||+|...
T Consensus 351 hLlS~~~ 357 (430)
T PRK07735 351 HLYSYGK 357 (430)
T ss_pred EEEecCC
Confidence 8887744
No 12
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=43.46 E-value=43 Score=24.18 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=34.2
Q ss_pred EEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCC------------CCCeEecCcHHHHHHH
Q 030719 77 VYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQS------------EGPLVLPCRVDVFYRV 129 (172)
Q Consensus 77 VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~------------~G~L~iPCd~~~Fe~v 129 (172)
+..|+|..||.+|..- -|++|.++-.+.|++.. +..++|.|+.++=|-+
T Consensus 5 ~~~~~d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 5 ATYGEEKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred EEeCCeEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 3446688999988643 58888888888776542 3467888998765543
No 13
>PF14317 YcxB: YcxB-like protein
Probab=38.61 E-value=71 Score=19.93 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCCceEEEEeCCCCeeEEEEecccCcHHHHHHHHH
Q 030719 70 APEGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEE 104 (172)
Q Consensus 70 ~pkG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~ 104 (172)
.-+.++.+|++ +..-+.||-+.++.-...++.+.
T Consensus 27 e~~~~~~l~~~-~~~~~~iPk~~f~~~e~~~f~~~ 60 (62)
T PF14317_consen 27 ETKDYFYLYLG-KNQAFIIPKRAFSEEEKEEFREF 60 (62)
T ss_pred EeCCEEEEEEC-CCeEEEEEHHHCCHhHHHHHHHH
Confidence 35788999998 45899999999996666665543
No 14
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=38.30 E-value=75 Score=23.43 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=36.6
Q ss_pred EEeCCCCeeEEEEecc-cCcHHHHHHHHHHHhhcCcCC-----------CC-CeEecCcHHHHHHHH
Q 030719 77 VYVGPQKQRFVIKTEY-VNHPLFKLLLEEAESEYGFQS-----------EG-PLVLPCRVDVFYRVL 130 (172)
Q Consensus 77 VYVG~e~~RfvVp~~y-L~hp~F~eLL~~aeeEfG~~~-----------~G-~L~iPCd~~~Fe~vl 130 (172)
|.-|++-+||-+|.+- -.+.-|..|.++-++-|.... +| -++|-||.++-+-+-
T Consensus 5 v~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~ 71 (91)
T cd06398 5 VKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQ 71 (91)
T ss_pred EEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHH
Confidence 3447789999999741 114578888888888776643 34 478889987665443
No 15
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=37.35 E-value=1.4e+02 Score=27.23 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=47.9
Q ss_pred CCCCceEEEEeCC--------------------CCeeEEEEecc--cCcHHHHHHHHHHHhhcCcCCCCCeEecCcHHHH
Q 030719 69 VAPEGCFSVYVGP--------------------QKQRFVIKTEY--VNHPLFKLLLEEAESEYGFQSEGPLVLPCRVDVF 126 (172)
Q Consensus 69 ~~pkG~~~VYVG~--------------------e~~RfvVp~~y--L~hp~F~eLL~~aeeEfG~~~~G~L~iPCd~~~F 126 (172)
..+.+.+.+.||. +.-|+.||+.| =|.--.++..+.+.+-||- +-+++==+---|
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~---~~~~~L~e~l~f 217 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGA---ENFQILTEKLPF 217 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCc---ccEEehhhhCCH
Confidence 3466789999984 23599999999 5666667777777777863 335555566668
Q ss_pred HHHHHHHhcCC
Q 030719 127 YRVLLAVDDHD 137 (172)
Q Consensus 127 e~vl~~l~~~~ 137 (172)
+..+.+|.+.+
T Consensus 218 ~eYl~lL~~~D 228 (322)
T PRK02797 218 DDYLALLRQCD 228 (322)
T ss_pred HHHHHHHHhCC
Confidence 88888888776
No 16
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=36.65 E-value=80 Score=21.89 Aligned_cols=58 Identities=21% Similarity=0.413 Sum_probs=40.6
Q ss_pred EEEEeCCCCeeEEEEeccc--CcHHHHHHHHHHHhhcCcCCCC--CeEec-CcHHHHHHHHHHHhcCC
Q 030719 75 FSVYVGPQKQRFVIKTEYV--NHPLFKLLLEEAESEYGFQSEG--PLVLP-CRVDVFYRVLLAVDDHD 137 (172)
Q Consensus 75 ~~VYVG~e~~RfvVp~~yL--~hp~F~eLL~~aeeEfG~~~~G--~L~iP-Cd~~~Fe~vl~~l~~~~ 137 (172)
+.+.||+ +++|-+.-..| ..|.|+.+++.. +....+ .|.++ ++...|+.++..+-.+.
T Consensus 13 ~~i~v~d-~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~ 75 (111)
T PF00651_consen 13 VTIRVGD-GKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTGE 75 (111)
T ss_dssp EEEEETT-TEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHSE
T ss_pred EEEEECC-CEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccccCCc
Confidence 3455663 78899988877 459999999887 112233 46656 88999999998886553
No 17
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=34.66 E-value=15 Score=23.15 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=15.3
Q ss_pred ccCcHHHHHHHHHHHhhcC
Q 030719 92 YVNHPLFKLLLEEAESEYG 110 (172)
Q Consensus 92 yL~hp~F~eLL~~aeeEfG 110 (172)
||+.-.|++++.|+.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 8999999999999999983
No 18
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=33.85 E-value=31 Score=24.48 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhcCcC
Q 030719 96 PLFKLLLEEAESEYGFQ 112 (172)
Q Consensus 96 p~F~eLL~~aeeEfG~~ 112 (172)
--++|||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 36899999999999985
No 19
>smart00153 VHP Villin headpiece domain.
Probab=33.58 E-value=17 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=16.6
Q ss_pred ccCcHHHHHHHHHHHhhc
Q 030719 92 YVNHPLFKLLLEEAESEY 109 (172)
Q Consensus 92 yL~hp~F~eLL~~aeeEf 109 (172)
||+.-.|++++.|+.+||
T Consensus 1 yLsdeeF~~vfgmsr~eF 18 (36)
T smart00153 1 YLSDEDFEEVFGMTREEF 18 (36)
T ss_pred CCCHHHHHHHHCCCHHHH
Confidence 789999999999999988
No 20
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=32.93 E-value=1.1e+02 Score=20.77 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=35.8
Q ss_pred EEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcC----------CCC-CeEecCcHHHHHHHHHHHhc
Q 030719 77 VYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQ----------SEG-PLVLPCRVDVFYRVLLAVDD 135 (172)
Q Consensus 77 VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~----------~~G-~L~iPCd~~~Fe~vl~~l~~ 135 (172)
++-+++.+| .+..-..+-|.+|..+.++.||.. .+| .++|.++.+ |+..+.....
T Consensus 6 ~~~~~~~~~---~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~D-l~~a~~~~~~ 71 (84)
T PF00564_consen 6 VRYGGDIRR---IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDED-LQEAIEQAKE 71 (84)
T ss_dssp EEETTEEEE---EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHH-HHHHHHHHHH
T ss_pred EEECCeeEE---EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHH-HHHHHHHHHh
Confidence 444555555 333345679999999999999883 455 577777764 4555555544
No 21
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=32.37 E-value=84 Score=23.21 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCCeeEEEEecccCcHHHHHHHHHHHhhcCc-------------CCCCC-eEecCcH
Q 030719 80 GPQKQRFVIKTEYVNHPLFKLLLEEAESEYGF-------------QSEGP-LVLPCRV 123 (172)
Q Consensus 80 G~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~-------------~~~G~-L~iPCd~ 123 (172)
|+|-+|+.+|.+- =-|.+|.++.+..|.. +.+|- +||-++.
T Consensus 8 g~DiR~~~~~~~~---~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~ 62 (81)
T cd06401 8 GDDIRRIPIHNED---ITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSS 62 (81)
T ss_pred CCeEEEEeccCcc---ccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHH
Confidence 6688887776422 2577888888877762 24453 6777764
No 22
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=30.82 E-value=91 Score=21.75 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.0
Q ss_pred eEEEEeCCCCeeEEEEeccc
Q 030719 74 CFSVYVGPQKQRFVIKTEYV 93 (172)
Q Consensus 74 ~~~VYVG~e~~RfvVp~~yL 93 (172)
.|+++|+...-++.|..+-|
T Consensus 18 ~F~a~~~g~~i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDGMQIRCAISAEAL 37 (83)
T ss_dssp EEEEEETTEEEEEEEEHHHH
T ss_pred EEEEEECCEEEEEEEeHHHH
Confidence 58889988889999998776
No 23
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.82 E-value=91 Score=23.28 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=31.8
Q ss_pred EEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCC-------------CCCeEecCcHHH
Q 030719 76 SVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQS-------------EGPLVLPCRVDV 125 (172)
Q Consensus 76 ~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~-------------~G~L~iPCd~~~ 125 (172)
.=|||.+.+-..|+-+ . -|.+|..+..+.++... ++-+.|-||.++
T Consensus 17 l~Y~GG~tr~i~V~r~-~---s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl 75 (97)
T cd06410 17 LRYVGGETRIVSVDRS-I---SFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDL 75 (97)
T ss_pred EEEcCCceEEEEEcCC-C---CHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHH
Confidence 4699988777778765 3 56677777777766544 456677788743
No 24
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=29.52 E-value=2e+02 Score=25.08 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=45.5
Q ss_pred CceEEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCC---------------CCeEecCcHHHHHHHHHHHhc
Q 030719 72 EGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSE---------------GPLVLPCRVDVFYRVLLAVDD 135 (172)
Q Consensus 72 kG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~---------------G~L~iPCd~~~Fe~vl~~l~~ 135 (172)
.|.|.|.-.+++-++.|.++.-.-+....++.....-|+.+.| -+|++|...+.||-+++.|-.
T Consensus 45 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aIig 123 (283)
T PRK10308 45 RGVVTVIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAILG 123 (283)
T ss_pred cEEEEEEEcCCCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHH
Confidence 5677777655666677766664445566777877777777644 358999999999988887644
No 25
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=26.94 E-value=93 Score=28.28 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=39.7
Q ss_pred CeeEEEEecccC--cHHHHHHHHH---HHhhcCcCCCCCeEecCcHHHHHHHHHHHhcCC
Q 030719 83 KQRFVIKTEYVN--HPLFKLLLEE---AESEYGFQSEGPLVLPCRVDVFYRVLLAVDDHD 137 (172)
Q Consensus 83 ~~RfvVp~~yL~--hp~F~eLL~~---aeeEfG~~~~G~L~iPCd~~~Fe~vl~~l~~~~ 137 (172)
.+=|..|.+.|- ..-|+++|.. ..++. .+=.|.+-||+..|+-+|.-+++..
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~---~~idisVhCDv~iF~WLm~yv~~~~ 69 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW---EEIDISVHCDVHIFEWLMRYVKGEP 69 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcC---CCcceEEecChhHHHHHHHHhhcCC
Confidence 456999998885 4679999965 33332 2345888999999999999999955
No 26
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=25.08 E-value=52 Score=28.55 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=25.0
Q ss_pred cCcHHHHHHHHHHHhhcCcCCCCCeEec
Q 030719 93 VNHPLFKLLLEEAESEYGFQSEGPLVLP 120 (172)
Q Consensus 93 L~hp~F~eLL~~aeeEfG~~~~G~L~iP 120 (172)
-.|-+|-++++.+..|-+|..+|||.|-
T Consensus 36 k~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 36 KTEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHHhcCCccccccCCceEEE
Confidence 3578999999999999999999999874
No 27
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=24.88 E-value=96 Score=21.61 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=19.5
Q ss_pred CCeeEEEEecccCcHHHHHHHHHHHhhcCcCCC
Q 030719 82 QKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSE 114 (172)
Q Consensus 82 e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~ 114 (172)
+.+|+.|++.--. .+.++|++|-+.||++.+
T Consensus 5 ~~rr~~vkvtp~~--~l~~VL~eac~k~~l~~~ 35 (65)
T PF11470_consen 5 NFRRFKVKVTPNT--TLNQVLEEACKKFGLDPS 35 (65)
T ss_dssp TS-EEEE---TTS--BHHHHHHHHHHHTT--GG
T ss_pred CCcEEEEEECCCC--CHHHHHHHHHHHcCCCcc
Confidence 5688988876533 577899999999999753
No 28
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=24.32 E-value=86 Score=23.76 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=16.0
Q ss_pred ccCcHHHHHHHHHHHhhcCcCCCCCeEec
Q 030719 92 YVNHPLFKLLLEEAESEYGFQSEGPLVLP 120 (172)
Q Consensus 92 yL~hp~F~eLL~~aeeEfG~~~~G~L~iP 120 (172)
-..-.-|..||+.|||.+|.++ -.|+++
T Consensus 37 ~~~K~~lvaLLElAee~L~c~~-vvic~~ 64 (108)
T PF02100_consen 37 QGSKESLVALLELAEEKLGCSH-VVICLD 64 (108)
T ss_dssp S--SHHHHHHHHHHHHHH-----EEEEE-
T ss_pred cccHHHHHHHHHHhcCcCCCCE-EEEEEE
Confidence 4455789999999999987553 234444
No 29
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=24.03 E-value=2.7e+02 Score=21.40 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhhcCcCCCCCeEecCcHHHHHHHHHHHhcCCCccccccccccCCCCCCCcceeecCCCCccccc
Q 030719 94 NHPLFKLLLEEAESEYGFQSEGPLVLPCRVDVFYRVLLAVDDHDHDHNKEDNFIRRPGCGFGKGYRLLSPSPMIPIN 170 (172)
Q Consensus 94 ~hp~F~eLL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~l~~~~~~~~a~~~~~~~~~C~~~~~~~l~~~~~~~~~~ 170 (172)
+||+..+.|+...+.| +|-.---.-..++-+|+...-+.... ..+....|. ++++|.|..-.+|+
T Consensus 6 ~H~~~~~~l~df~~~Y----~~~~w~~nGP~lltRVl~~~C~~~~~-----~~~~~~~C~---~~~vlp~~~FYPI~ 70 (135)
T PF04572_consen 6 GHPFLWECLEDFVKNY----DGNKWGHNGPDLLTRVLKKFCNTENF-----KDMEDNRCR---GFSVLPPEAFYPIP 70 (135)
T ss_pred CCHHHHHHHHHHHHHc----CcchhcccCcHHHHHHHHHHhcCCCc-----cccccccCC---CeEEcCccceeccC
Confidence 5999999999999988 23333334456788888666555432 111122365 58888887766554
No 30
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=22.82 E-value=39 Score=24.82 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.6
Q ss_pred ceeecCCCCcccccC
Q 030719 157 GYRLLSPSPMIPINH 171 (172)
Q Consensus 157 ~~~l~~~~~~~~~~~ 171 (172)
.|.||.|-+|+.+|-
T Consensus 22 ~~vlL~PEgmi~Lne 36 (88)
T PRK02079 22 CHVLLYPEGMIKLNE 36 (88)
T ss_pred ceEEEcCCeeeeech
Confidence 499999999999985
No 31
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=22.65 E-value=1.8e+02 Score=20.79 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhcCcC-CCCCeEecCcHHHHHHHHHHH
Q 030719 95 HPLFKLLLEEAESEYGFQ-SEGPLVLPCRVDVFYRVLLAV 133 (172)
Q Consensus 95 hp~F~eLL~~aeeEfG~~-~~G~L~iPCd~~~Fe~vl~~l 133 (172)
.+-=+++|+..-..||+. .+|.|.+.++.+.|-..+..+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~l 83 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRL 83 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHH
Confidence 566779999999999997 579999999999887765543
No 32
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=21.11 E-value=37 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHHHhhhhcCCCCc
Q 030719 8 GKKGNLIVKTWERCKSIGRSSKR 30 (172)
Q Consensus 8 ~kK~~~laKkwqr~~slgr~~~~ 30 (172)
|+|+++|++.|....-..|++++
T Consensus 29 GqkIa~l~kdw~~~~~~~r~KiR 51 (64)
T PF05596_consen 29 GQKIAQLAKDWNEICQEVRKKIR 51 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999987766665543
No 33
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=21.00 E-value=1.8e+02 Score=21.71 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=35.2
Q ss_pred CceEEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCCCCeEecCcHHH
Q 030719 72 EGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSEGPLVLPCRVDV 125 (172)
Q Consensus 72 kG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~iPCd~~~ 125 (172)
.-.+-||=.++.-+|.++-.. .--+|...+|-+|||....-.----|++.+
T Consensus 2 d~VlkvykaDQt~kyili~K~---Tta~evv~lal~eFgi~~~s~~~sLceVtV 52 (85)
T cd01785 2 DHVLKVYKADQTCKYLLIYKE---TTAHEVVMLALQEFGITAPSSNFSLCEVSV 52 (85)
T ss_pred cceEEEEecCcceeEEEEecc---ccHHHHHHHHHHHhCCCCCccceEEEEEEe
Confidence 345678888888888877665 345788999999999875433333366544
Done!