Query 030719
Match_columns 172
No_of_seqs 187 out of 644
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 05:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nn7a_ d.42.1.2 (A:) Potassiu 49.0 1.3 9.8E-05 30.2 -0.5 59 75-137 2-62 (105)
2 d1unda_ a.14.1.1 (A:) Advillin 44.4 2.2 0.00016 24.6 -0.0 18 92-109 1-18 (36)
3 d1t1da_ d.42.1.2 (A:) Shaker p 44.2 6.6 0.00048 26.3 2.6 59 75-137 3-64 (100)
4 d2al3a1 d.15.1.2 (A:10-85) Tet 37.8 18 0.0013 23.6 3.9 32 80-113 7-38 (76)
5 d3kvta_ d.42.1.2 (A:) akv3.1 v 37.0 3 0.00022 28.2 -0.3 59 74-137 3-65 (103)
6 d2bkfa1 d.15.2.2 (A:1-85) Next 35.8 33 0.0024 22.6 5.1 52 75-128 7-67 (85)
7 d1y6ia2 a.261.1.1 (A:83-233) M 35.0 1.7 0.00012 32.2 -2.0 31 68-100 118-148 (151)
8 d2c9wc1 d.42.1.1 (C:17-112) El 26.6 48 0.0035 21.4 4.6 56 78-134 5-62 (96)
9 d3buxb3 d.93.1.1 (B:264-351) C 26.2 38 0.0028 22.5 4.0 39 76-116 42-80 (88)
10 d1zavu1 a.108.1.1 (U:1-30) Rib 25.9 16 0.0012 19.9 1.6 20 91-110 11-30 (30)
11 d1b0aa2 c.58.1.2 (A:2-122) Tet 25.1 91 0.0067 20.8 7.0 63 70-143 31-95 (121)
12 d1yu5x1 a.14.1.1 (X:10-76) Vil 25.0 7.4 0.00054 25.1 0.1 19 91-109 31-49 (67)
13 d1fc4a_ c.67.1.4 (A:) 2-amino- 23.9 22 0.0016 28.3 2.9 34 82-115 43-81 (401)
14 d1z3xa2 a.261.1.1 (A:88-235) G 22.6 2 0.00014 31.7 -3.7 29 68-98 118-146 (148)
15 d1a4ia2 c.58.1.2 (A:2-126) Tet 20.9 77 0.0056 21.4 5.0 63 70-143 33-97 (125)
No 1
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=48.96 E-value=1.3 Score=30.22 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=41.1
Q ss_pred EEEEeCCCCeeEEEEeccc-CcHHHHHHHHHHHhhcCc-CCCCCeEecCcHHHHHHHHHHHhcCC
Q 030719 75 FSVYVGPQKQRFVIKTEYV-NHPLFKLLLEEAESEYGF-QSEGPLVLPCRVDVFYRVLLAVDDHD 137 (172)
Q Consensus 75 ~~VYVG~e~~RfvVp~~yL-~hp~F~eLL~~aeeEfG~-~~~G~L~iPCd~~~Fe~vl~~l~~~~ 137 (172)
+.+-|| +.+|.+..+-| ++|.. +|........+ +.+|.+-|--|...|++||.-++.+.
T Consensus 2 I~LNVG--G~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVS--GTRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEET--TEEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEC--CEEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 456787 68999988755 34431 12222222223 47899999999999999999999774
No 2
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.42 E-value=2.2 Score=24.62 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=16.8
Q ss_pred ccCcHHHHHHHHHHHhhc
Q 030719 92 YVNHPLFKLLLEEAESEY 109 (172)
Q Consensus 92 yL~hp~F~eLL~~aeeEf 109 (172)
||+.-.|++++.|+.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 899999999999999988
No 3
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=44.24 E-value=6.6 Score=26.34 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=40.5
Q ss_pred EEEEeCCCCeeEEEEecccCc-H--HHHHHHHHHHhhcCcCCCCCeEecCcHHHHHHHHHHHhcCC
Q 030719 75 FSVYVGPQKQRFVIKTEYVNH-P--LFKLLLEEAESEYGFQSEGPLVLPCRVDVFYRVLLAVDDHD 137 (172)
Q Consensus 75 ~~VYVG~e~~RfvVp~~yL~h-p--~F~eLL~~aeeEfG~~~~G~L~iPCd~~~Fe~vl~~l~~~~ 137 (172)
+.+-|| +++|.+..+=|.. | .+..|.... .+--+.+|.+-|--|...|++||.-++.+.
T Consensus 3 I~LNVG--G~~f~t~~~tL~~~p~s~l~~l~~~~--~~~~~~~g~~FiDRdp~~F~~IL~flR~~~ 64 (100)
T d1t1da_ 3 VVINVS--GLRFETQLKTLNQFPDTLLGNPQKRN--RYYDPLRNEYFFDRNRPSFDAILYFYQSGG 64 (100)
T ss_dssp EEEEET--TEEEEEEHHHHHTSTTSTTTCHHHHG--GGEETTTTEEEECSCSTTHHHHHHHHHTTS
T ss_pred EEEEEC--CEEEEEeHHHHhhCCCchhHHHHhCC--CcCCCCCCeEEEecCHHHHHHHHHHHhcCC
Confidence 456687 6999998865533 3 333333221 111246899999999999999999998754
No 4
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.84 E-value=18 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCC
Q 030719 80 GPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQS 113 (172)
Q Consensus 80 G~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~ 113 (172)
...++|..|++.-=. ...+.|++|-+.|||+.
T Consensus 7 ~~~~rR~~VKvtP~t--~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 7 APNGRRHTVKVTPST--VLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp CTTSCEEEECCCTTS--BHHHHHHHHHHHTTCCG
T ss_pred CCCCcEEEEEeCCCc--CHHHHHHHHHHHhCCCh
Confidence 457899999986543 56789999999999974
No 5
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=36.96 E-value=3 Score=28.21 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=41.4
Q ss_pred eEEEEeCCCCeeEEEEecccCc-H--HHHHHHHHHHhhcCc-CCCCCeEecCcHHHHHHHHHHHhcCC
Q 030719 74 CFSVYVGPQKQRFVIKTEYVNH-P--LFKLLLEEAESEYGF-QSEGPLVLPCRVDVFYRVLLAVDDHD 137 (172)
Q Consensus 74 ~~~VYVG~e~~RfvVp~~yL~h-p--~F~eLL~~aeeEfG~-~~~G~L~iPCd~~~Fe~vl~~l~~~~ 137 (172)
.+.+=|| +++|.+..+-|.. | .|..+ ++....+ +.+|.+-|--+...|++||..++.+.
T Consensus 3 rI~LNVG--G~~F~t~~~tL~~~~~s~l~~~---~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~ 65 (103)
T d3kvta_ 3 RVIINVG--GIRHETYKATLKKIPATRLSRL---TEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 65 (103)
T ss_dssp EEEEEET--TEEEEEEHHHHTTSCSSTTTTC---CTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEEC--CEEEEEeHHHHhhCccchhHHH---HcCCCccCCCCCcEEecCCHHHHHHHHHHHccCC
Confidence 3556687 5999998876652 3 22222 2222333 36889999999999999999999874
No 6
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.82 E-value=33 Score=22.65 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=37.7
Q ss_pred EEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCc--------CCC-CCeEecCcHHHHHH
Q 030719 75 FSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGF--------QSE-GPLVLPCRVDVFYR 128 (172)
Q Consensus 75 ~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~--------~~~-G~L~iPCd~~~Fe~ 128 (172)
+-|..|++-.||.|+.. +++.|.+|..+.+.-||. +.+ --++|.|++++=|.
T Consensus 7 vKvtf~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~ 67 (85)
T d2bkfa1 7 LNVTFKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 67 (85)
T ss_dssp EEEEETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred EEEEECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHH
Confidence 44555778999998533 467789999999988884 233 35889999976544
No 7
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=35.04 E-value=1.7 Score=32.24 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=19.6
Q ss_pred CCCCCceEEEEeCCCCeeEEEEecccCcHHHHH
Q 030719 68 RVAPEGCFSVYVGPQKQRFVIKTEYVNHPLFKL 100 (172)
Q Consensus 68 ~~~pkG~~~VYVG~e~~RfvVp~~yL~hp~F~e 100 (172)
..+|+||+|+.-.--+-| +--..|+||.|.+
T Consensus 118 l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 358999999864211122 2225889998864
No 8
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.56 E-value=48 Score=21.36 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=35.6
Q ss_pred EeCCCCeeEEEEecccC-cHHHHHHHHHHHhhcCcCCCCCeEec-CcHHHHHHHHHHHh
Q 030719 78 YVGPQKQRFVIKTEYVN-HPLFKLLLEEAESEYGFQSEGPLVLP-CRVDVFYRVLLAVD 134 (172)
Q Consensus 78 YVG~e~~RfvVp~~yL~-hp~F~eLL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~l~ 134 (172)
.+..|+.+|.|+.+... .+.++.+|+... .|+=..+++|.|| =+...++.|+.-+.
T Consensus 5 L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~-~~~e~~~~~IpL~nV~s~iL~kViey~~ 62 (96)
T d2c9wc1 5 LISSDGHEFIVKREHALTSGTIKAMLSGPG-QFAENETNEVNFREIPSHVLSKVCMYFT 62 (96)
T ss_dssp EECTTCCEEEEEHHHHTTSHHHHHC-------------CEEECTTCCHHHHHHHHHHHH
T ss_pred EEcCCCCEEEeeHHHHHHhHHHHHHHhccC-ccccCCCCeeECCCCCHHHHHHHHHHHH
Confidence 45678999999998875 568888886432 1111345788887 58889999987765
No 9
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.17 E-value=38 Score=22.50 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=27.7
Q ss_pred EEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCCCC
Q 030719 76 SVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSEGP 116 (172)
Q Consensus 76 ~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~ 116 (172)
.=||..|+ =++-+--.|.|++|+|++-..|-|=.-.||.
T Consensus 42 IGyvt~dg--~IlQTIp~nk~L~qaLidG~reGfylyPdG~ 80 (88)
T d3buxb3 42 IGYVTADG--NILQTIPHNKPLFQALIDGFREGFYLFPDGR 80 (88)
T ss_dssp EEEECTTS--CEEEECCSSCCHHHHHHHHHHHTSSCEETTC
T ss_pred eeeeccCC--ceeeeccCccHHHHHHHhcccceeEECCCCC
Confidence 34776553 3566777899999999999999663334553
No 10
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.85 E-value=16 Score=19.91 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=15.8
Q ss_pred cccCcHHHHHHHHHHHhhcC
Q 030719 91 EYVNHPLFKLLLEEAESEYG 110 (172)
Q Consensus 91 ~yL~hp~F~eLL~~aeeEfG 110 (172)
+-|.-..+.+|.++.|+.||
T Consensus 11 ekltvaelaelvk~ledkfg 30 (30)
T d1zavu1 11 EKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHSBHHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHhhcC
Confidence 34556678899999999997
No 11
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=25.15 E-value=91 Score=20.80 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCCceEEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCCCCeEec--CcHHHHHHHHHHHhcCCCccccc
Q 030719 70 APEGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSEGPLVLP--CRVDVFYRVLLAVDDHDHDHNKE 143 (172)
Q Consensus 70 ~pkG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~iP--Cd~~~Fe~vl~~l~~~~~~~~a~ 143 (172)
.+.+..+|+||++. ..-.....-.++.++.|+... .+.+| |....|..++..+..+.+++--+
T Consensus 31 ~~P~LavI~vg~d~----------aS~~Yv~~k~k~a~~lGi~~~-~~~l~~~~t~~~l~~~I~~lN~d~~v~GIl 95 (121)
T d1b0aa2 31 RAPGLAVVLVGSNP----------ASQIYVASKRKACEEVGFVSR-SYDLPETTSEAELLELIDTLNADNTIDGIL 95 (121)
T ss_dssp CCCEEEEEEESCCH----------HHHHHHHHHHHHHHHHTCEEC-CEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCceEEEEEeCCCh----------hHHHHHHHHHHHHHhhcccee-eeeccccccHHHHHHHHHHHhCCCchhhhh
Confidence 35689999999641 122355777788899998743 46776 77788888888888887654333
No 12
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.96 E-value=7.4 Score=25.05 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=18.2
Q ss_pred cccCcHHHHHHHHHHHhhc
Q 030719 91 EYVNHPLFKLLLEEAESEY 109 (172)
Q Consensus 91 ~yL~hp~F~eLL~~aeeEf 109 (172)
.||+.-.|++++.|+.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 13
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=23.86 E-value=22 Score=28.32 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCeeEEE--EecccC---cHHHHHHHHHHHhhcCcCCCC
Q 030719 82 QKQRFVI--KTEYVN---HPLFKLLLEEAESEYGFQSEG 115 (172)
Q Consensus 82 e~~RfvV--p~~yL~---hp~F~eLL~~aeeEfG~~~~G 115 (172)
|+++|+= --+||+ ||.+++...++-+.||....+
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~ 81 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMAS 81 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCS
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCccc
Confidence 5577642 335663 999999999999999976433
No 14
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.58 E-value=2 Score=31.74 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=18.3
Q ss_pred CCCCCceEEEEeCCCCeeEEEEecccCcHHH
Q 030719 68 RVAPEGCFSVYVGPQKQRFVIKTEYVNHPLF 98 (172)
Q Consensus 68 ~~~pkG~~~VYVG~e~~RfvVp~~yL~hp~F 98 (172)
..+|+||+|+.- ..+-.-|=-.+|+||.|
T Consensus 118 l~AP~GHLP~~~--~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 118 LSAPRGHLPLTN--QLRGVQVLNALLNHPAW 146 (148)
T ss_dssp TTSCTTCCSCCC--CTTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCC--ccchHHHHHHHhcCccc
Confidence 358999999754 22223333367788876
No 15
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.94 E-value=77 Score=21.35 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCCceEEEEeCCCCeeEEEEecccCcHHHHHHHHHHHhhcCcCCCCCeEec--CcHHHHHHHHHHHhcCCCccccc
Q 030719 70 APEGCFSVYVGPQKQRFVIKTEYVNHPLFKLLLEEAESEYGFQSEGPLVLP--CRVDVFYRVLLAVDDHDHDHNKE 143 (172)
Q Consensus 70 ~pkG~~~VYVG~e~~RfvVp~~yL~hp~F~eLL~~aeeEfG~~~~G~L~iP--Cd~~~Fe~vl~~l~~~~~~~~a~ 143 (172)
.+.+..+|+||++. ..-.....-.++.++.|+..+ .+.+| .+...|...+..+..+.+++-.+
T Consensus 33 ~~P~LavIlvg~d~----------aS~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~e~el~~~I~~lN~d~~V~GIl 97 (125)
T d1a4ia2 33 FTPRLAILQVGNRD----------DSNLYINVKLKAAEEIGIKAT-HIKLPRTTTESEVMKYITSLNEDSTVHGFL 97 (125)
T ss_dssp CCCEEEEEEESCCH----------HHHHHHHHHHHHHHHHTCEEE-EEEECTTCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCceEEEEEcCCCh----------hHHHHHHHHHHHHHhccceEE-EEecCcchhHHHHHHHHHHHhccCCcceEE
Confidence 45578899999752 122455677888899998643 36777 55667888888887777654333
Done!