Query 030721
Match_columns 172
No_of_seqs 117 out of 991
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3358 Uncharacterized secret 100.0 4.7E-48 1E-52 292.6 15.4 166 2-169 36-201 (211)
2 KOG3359 Dolichyl-phosphate-man 100.0 1.7E-47 3.6E-52 341.0 17.0 165 2-167 325-503 (723)
3 COG1928 PMT1 Dolichyl-phosphat 100.0 4.8E-43 1E-47 312.0 14.5 165 1-167 311-483 (699)
4 PF02815 MIR: MIR domain; Int 100.0 1.2E-37 2.6E-42 243.5 1.9 156 7-166 1-187 (190)
5 KOG3359 Dolichyl-phosphate-man 99.9 1E-26 2.3E-31 208.1 10.0 144 7-166 276-438 (723)
6 COG1928 PMT1 Dolichyl-phosphat 99.9 6.4E-23 1.4E-27 183.6 12.4 144 7-166 264-419 (699)
7 KOG3358 Uncharacterized secret 99.8 9.7E-21 2.1E-25 144.0 7.5 108 51-162 23-139 (211)
8 smart00472 MIR Domain in ryano 99.6 1.3E-15 2.7E-20 96.9 6.6 53 52-105 2-56 (57)
9 smart00472 MIR Domain in ryano 99.6 2.3E-15 5E-20 95.6 6.4 53 110-162 2-56 (57)
10 PF02815 MIR: MIR domain; Int 99.6 3.7E-15 8E-20 116.4 5.3 79 69-152 1-107 (190)
11 PF08709 Ins145_P3_rec: Inosit 98.7 4.7E-08 1E-12 78.0 7.8 106 51-163 95-208 (214)
12 PF08709 Ins145_P3_rec: Inosit 98.2 1.1E-05 2.4E-10 64.4 9.0 99 1-106 107-208 (214)
13 KOG3533 Inositol 1,4,5-trispho 97.9 9.3E-06 2E-10 77.8 4.0 99 32-134 219-326 (2706)
14 PF04601 DUF569: Protein of un 97.6 0.002 4.4E-08 48.2 11.4 119 7-150 10-130 (142)
15 KOG3533 Inositol 1,4,5-trispho 97.3 0.0016 3.6E-08 63.1 10.0 150 2-166 130-297 (2706)
16 KOG2243 Ca2+ release channel ( 97.3 0.00016 3.6E-09 69.7 3.1 119 4-132 188-310 (5019)
17 PF04601 DUF569: Protein of un 97.0 0.014 3.1E-07 43.7 10.3 91 54-160 4-96 (142)
18 PF14200 RicinB_lectin_2: Rici 95.8 0.28 6.1E-06 34.0 10.8 102 35-161 2-105 (105)
19 KOG2243 Ca2+ release channel ( 93.1 0.15 3.2E-06 50.6 4.8 117 34-164 157-282 (5019)
20 PF00167 FGF: Fibroblast growt 90.3 4.9 0.00011 28.8 9.4 52 67-134 9-60 (122)
21 cd00257 Fascin Fascin-like dom 86.1 9.6 0.00021 26.7 10.3 58 59-133 3-60 (119)
22 PF06268 Fascin: Fascin domain 84.2 12 0.00026 26.2 8.9 98 23-159 12-110 (111)
23 cd00058 FGF Acidic and basic f 80.3 20 0.00043 26.0 9.1 51 68-134 8-58 (123)
24 cd00257 Fascin Fascin-like dom 73.8 28 0.0006 24.3 11.4 75 57-159 43-118 (119)
25 smart00442 FGF Acidic and basi 63.9 53 0.0012 23.8 7.4 53 66-134 10-62 (126)
26 PF14200 RicinB_lectin_2: Rici 63.9 43 0.00094 22.8 6.7 56 98-162 2-58 (105)
27 smart00791 Agglutinin Amaranth 51.1 29 0.00062 25.9 4.0 27 52-78 89-116 (139)
28 PF00167 FGF: Fibroblast growt 50.2 24 0.00052 25.1 3.5 93 5-134 9-103 (122)
29 cd00058 FGF Acidic and basic f 45.4 36 0.00078 24.6 3.8 39 25-75 19-57 (123)
30 PF07468 Agglutinin: Agglutini 35.4 1.9E+02 0.0041 22.0 6.3 54 58-132 55-124 (153)
31 smart00791 Agglutinin Amaranth 33.2 2.1E+02 0.0045 21.4 7.3 63 55-132 48-112 (139)
32 PF06229 FRG1: FRG1-like famil 31.0 2.6E+02 0.0057 21.9 8.9 59 57-133 38-96 (191)
33 TIGR03170 flgA_cterm flagella 23.4 87 0.0019 22.0 2.7 18 56-73 95-112 (122)
34 KOG3293 Small nuclear ribonucl 20.6 3.1E+02 0.0066 20.1 4.9 41 60-106 17-60 (134)
No 1
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=100.00 E-value=4.7e-48 Score=292.58 Aligned_cols=166 Identities=55% Similarity=0.971 Sum_probs=159.8
Q ss_pred ccCCCeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCC
Q 030721 2 HEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPIS 81 (172)
Q Consensus 2 h~~t~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S 81 (172)
|..+++.||||+.+|++||+||+||++....|.|++|+|++..+..++.+++|+||++|||.|+.||++||||-+.+|+|
T Consensus 36 n~~~~~RLHSHDVkYGSgSGQQSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPlS 115 (211)
T KOG3358|consen 36 NTKHKFRLHSHDVKYGSGSGQQSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPLS 115 (211)
T ss_pred ccccceeeeccccCccCCCCcceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeecccchhhcccCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCCCCCCcEEEE
Q 030721 82 GNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAA 161 (172)
Q Consensus 82 ~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~~~~~~W~ve 161 (172)
++||||||+.++++|..|.|.|.|. |+.|.....|||+|+.|+.||..++.+|..|+.+|+||.++..+..++.|++.
T Consensus 116 gnqEVSafG~dgegDtgD~Wtvic~--g~~W~r~~~vrl~Hi~T~~yLs~sg~qygrpi~GQ~EV~G~~~~~~~n~Wkaa 193 (211)
T KOG3358|consen 116 GNQEVSAFGEDGEGDTGDHWTVICN--GKTWKRDARVRLQHIDTSVYLSVSGEQYGRPISGQQEVVGMRSPKAGNIWKAA 193 (211)
T ss_pred CCeeEEeecccCCCCcccceEEEeC--CccccccceEEEEEeccceeEEecccccCCccCCceEEecccCCCCCCceeec
Confidence 9999999999899999999998886 58899999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCC
Q 030721 162 EGVYLPVT 169 (172)
Q Consensus 162 ~~~~~~~~ 169 (172)
+|+|+++.
T Consensus 194 EGifikp~ 201 (211)
T KOG3358|consen 194 EGIFIKPS 201 (211)
T ss_pred cceEecCc
Confidence 99999987
No 2
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-47 Score=341.00 Aligned_cols=165 Identities=37% Similarity=0.527 Sum_probs=148.3
Q ss_pred ccCCCeeEEEeecccCCC-CCCceecccccccCCCCceEEee-cCCCC---CCCCceeeeCCEEEEEeccCCCceeecCC
Q 030721 2 HEKTKFRLHSHEVPYGSG-SGQQSVTGFPDVDDANSYWIVKP-ILGAS---AKQGDTIKSGTIIRLQHMRTRKWLHSHLH 76 (172)
Q Consensus 2 h~~t~~~LHSh~~~y~~g-s~~q~Vt~~~~~~d~n~~W~I~~-~~~~~---~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~ 76 (172)
|..+|+|||||..+||.| |.|||||+|.+ +|.||.|.|++ ....+ ..+.++|+.||.|||+|+.||++||||++
T Consensus 325 ~~~~~gyLHSH~~~YP~g~S~QQQVT~Y~~-~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~r~LhsHdv 403 (723)
T KOG3359|consen 325 HKTGGGYLHSHLHTYPEGYSEQQQVTGYPH-KDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTGRNLHSHDV 403 (723)
T ss_pred cCCcceeeecccccCCCCcCccceEEeecc-cCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccCcccccCCC
Confidence 456789999999999999 99999999999 99999999994 32222 45689999999999999999999999999
Q ss_pred CCCCCC-CeEEEEecCCC-CCCCCCcEEEEEccCC-----c-eeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEE
Q 030721 77 ASPISG-NLEISCFGGEE-ESDTGDYWRVMIEGSG-----K-TWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCG 148 (172)
Q Consensus 77 ~~p~S~-~qeVs~~~~~~-~~d~~~~W~Ie~~~~~-----~-~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c 148 (172)
++|+|+ ++|||||++.+ .+|++|.|+||+.++. + ..+..+.|||+|+.|||||.+|+.+||+||++|+||+|
T Consensus 404 ~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl~h~~t~c~L~ss~~~LP~WGf~Q~EV~c 483 (723)
T KOG3359|consen 404 AAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRLIHVLTGCYLKSSGKKLPEWGFEQQEVVC 483 (723)
T ss_pred CCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEEEEEcccceEEccCCCcCCcccccceEEec
Confidence 999995 79999999765 8999999999998754 2 45699999999999999999999999999999999999
Q ss_pred EcCC-CCCCcEEEEEeeeCC
Q 030721 149 VREK-RADNVWLAAEGVYLP 167 (172)
Q Consensus 149 ~~~~-~~~~~W~ve~~~~~~ 167 (172)
.+++ +.++.|+||+++...
T Consensus 484 ~~~~~~~~T~WnVEe~~n~~ 503 (723)
T KOG3359|consen 484 AKNPRDKSTTWNVEEHENPR 503 (723)
T ss_pred ccCCcCCCceEEEecccCCc
Confidence 9887 579999999999663
No 3
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-43 Score=312.03 Aligned_cols=165 Identities=35% Similarity=0.480 Sum_probs=150.8
Q ss_pred CccCC-CeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCC
Q 030721 1 MHEKT-KFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASP 79 (172)
Q Consensus 1 ~h~~t-~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p 79 (172)
||.+| |+|||||...||.||+|||||+|.+ .|.||.|.|+... +...+.++|++|+.|||+|..||++||+|++++|
T Consensus 311 rh~~t~g~~LHSh~~~YP~gs~qqqvt~y~~-~d~NN~W~~e~~~-~~~~~~~~l~~G~~vrL~H~~T~~~Lh~H~~~~p 388 (699)
T COG1928 311 RHAGTGGGYLHSHNQLYPEGSEQQQVTGYGH-KDANNEWLIELSD-ENATQIEPLKDGQSVRLRHKYTGKNLHFHDVKPP 388 (699)
T ss_pred eccCCccchhhcccCCCCCCcccceeecccc-cccccceeeeecc-cccccceeccCCcEEEEEEeeccceeecCCCCCC
Confidence 68777 4999999999999999999999999 9999999999555 4456789999999999999999999999999999
Q ss_pred CCC-CeEEEEecCCCCCCCCCcEEEEEccC------CceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCC
Q 030721 80 ISG-NLEISCFGGEEESDTGDYWRVMIEGS------GKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK 152 (172)
Q Consensus 80 ~S~-~qeVs~~~~~~~~d~~~~W~Ie~~~~------~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~ 152 (172)
+|+ +.|||||+++.+||++|.|+||+.++ ....+..+.|||+|+.|||||.+|+.+||+|++.|+||.|.++.
T Consensus 389 vS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h~~~~cyL~s~~~~lP~Wgf~q~EV~c~~~~ 468 (699)
T COG1928 389 VSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEWGFSQREVLCAKDR 468 (699)
T ss_pred CCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceeeeecccceeeccCCCCCCCcccccceeEeeecc
Confidence 996 78999999888899999999999765 23567999999999999999999999999999999999999887
Q ss_pred CCCCcEEEEEeeeCC
Q 030721 153 RADNVWLAAEGVYLP 167 (172)
Q Consensus 153 ~~~~~W~ve~~~~~~ 167 (172)
++++.|+||+++...
T Consensus 469 ~~~T~W~ie~~~n~~ 483 (699)
T COG1928 469 DPSTTWNIEENVNDR 483 (699)
T ss_pred CCcceeeeecccCcc
Confidence 789999999999663
No 4
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=100.00 E-value=1.2e-37 Score=243.55 Aligned_cols=156 Identities=38% Similarity=0.571 Sum_probs=127.4
Q ss_pred eeEEEeecccCCCCCCceecccccccCCCCc-------------------eEEeecCCCCCCCCceeeeCCEEEEEeccC
Q 030721 7 FRLHSHEVPYGSGSGQQSVTGFPDVDDANSY-------------------WIVKPILGASAKQGDTIKSGTIIRLQHMRT 67 (172)
Q Consensus 7 ~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~-------------------W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T 67 (172)
+|||||+..||.||.|||||+|++ .|.||. |+|++..... ..+..|+.||.|||+|+.|
T Consensus 1 g~Lhshd~~y~~~s~qqqvt~~~~-~d~nn~~~~~~~~~~~~~~~~~~slW~IE~~~~~~-~~g~~v~~g~~iRL~H~~T 78 (190)
T PF02815_consen 1 GYLHSHDVIYPFHSEQQQVTTYPH-NDDNNEFRRTVNRESGAVATSANSLWQIEPVSEDP-WSGGPVKWGDVIRLRHLST 78 (190)
T ss_dssp TCEECCEEEEEEETTTCEEEEEEE-SSTGCCEEEBEESSSGGGGGSGGGEEEEEE-TSST-TTTSB-BTTSEEEEEETTT
T ss_pred CeeEEEeeCCCCCCCcceEEEECc-cCCCccccceeeeeccccccccccceEEecCCCCc-ccCCcccCCCEEEEEEccC
Confidence 589999999999999999999998 888888 9999855432 3688899999999999999
Q ss_pred CCceeecCCCCCCCC----CeEEEEecCCC-CCCCCCc--EEEEEcc-----CCceeeeCCeEEEEEccCCeeeeecCCC
Q 030721 68 RKWLHSHLHASPISG----NLEISCFGGEE-ESDTGDY--WRVMIEG-----SGKTWRQDQRIRLQHVDTGGYLHSHPKK 135 (172)
Q Consensus 68 ~~~Lhsh~~~~p~S~----~qeVs~~~~~~-~~d~~~~--W~Ie~~~-----~~~~~~~~~~~rL~H~~t~~~L~s~~~~ 135 (172)
|+|||+|++++|++. ++|||||+... .+|.+|. .+++... ...++...+.|||+|+.|||||++++.+
T Consensus 79 g~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 79 GKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp S-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 999999999999974 69999999543 3666665 2222221 2356778999999999999999999999
Q ss_pred CCCCCCCCeeEEEEcCCCCCCcEEEEEeeeC
Q 030721 136 YQRIAGGQQEVCGVREKRADNVWLAAEGVYL 166 (172)
Q Consensus 136 lp~~~~~q~EV~c~~~~~~~~~W~ve~~~~~ 166 (172)
||.|+++|+||+|+.. ..+.|+||+...+
T Consensus 159 lp~wg~~q~Ev~~~~~--~~~~w~~e~~~~~ 187 (190)
T PF02815_consen 159 LPEWGFGQQEVACMKK--SGTMWNVEDNENP 187 (190)
T ss_dssp S-TTTTTSCEEEEEEE--EEEESSGGSST-E
T ss_pred cccccccccEEeeecC--CCceeeEeccccc
Confidence 9999999999999986 7889998877643
No 5
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-26 Score=208.07 Aligned_cols=144 Identities=26% Similarity=0.375 Sum_probs=123.1
Q ss_pred eeEEEeeccc-CCCCCCceecccccccCCCCceEEeecCCCCCCC-CceeeeCCEEEEEeccC-CCceeecCCCCCCC--
Q 030721 7 FRLHSHEVPY-GSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQ-GDTIKSGTIIRLQHMRT-RKWLHSHLHASPIS-- 81 (172)
Q Consensus 7 ~~LHSh~~~y-~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~-~~~V~~g~~I~L~H~~T-~~~Lhsh~~~~p~S-- 81 (172)
||+|++.++. ++|++.|+ +.||+.+++|+. .++ +..|.+|+.|+|+|..+ ++|||||.+.||..
T Consensus 276 F~vHf~~l~~sGpgDs~ms-s~FQa~L~G~~i----------~~~~p~~v~~GS~Itir~~~~~~gyLHSH~~~YP~g~S 344 (723)
T KOG3359|consen 276 FYVHFSLLNRSGPGDSFMS-SEFQASLKGNSI----------TNGVPRDVAYGSTITLRHHKTGGGYLHSHLHTYPEGYS 344 (723)
T ss_pred HHHHHHHhhcCCCCccccC-HHHHHHhCCCCC----------CCCCcceeeeccEEEEEecCCcceeeecccccCCCCcC
Confidence 5778888887 78999999 999998888764 123 89999999999999998 99999999999995
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEEcc-------C--CceeeeCCeEEEEEccCCeeeeecCCCCCCCCC-CCeeEEEEcC
Q 030721 82 GNLEISCFGGEEESDTGDYWRVMIEG-------S--GKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAG-GQQEVCGVRE 151 (172)
Q Consensus 82 ~~qeVs~~~~~~~~d~~~~W~Ie~~~-------~--~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~-~q~EV~c~~~ 151 (172)
+|||||||.+ .|.||+|+||... . -.+++.|+.|||+|+.|||+|++|+.+ +|++ +|+||+|+++
T Consensus 345 ~QQQVT~Y~~---~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~r~LhsHdv~--apvs~~~~EvS~yg~ 419 (723)
T KOG3359|consen 345 EQQQVTGYPH---KDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTGRNLHSHDVA--APVSPQQYEVSCYGD 419 (723)
T ss_pred ccceEEeecc---cCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccCcccccCCCC--CCCCCCceEEEEEec
Confidence 7999999997 8999999999311 1 246899999999999999999999987 7885 5699999986
Q ss_pred C----CCCCcEEEEEeeeC
Q 030721 152 K----RADNVWLAAEGVYL 166 (172)
Q Consensus 152 ~----~~~~~W~ve~~~~~ 166 (172)
. +.++.|+||...--
T Consensus 420 ~~~~gd~~d~w~veIv~~~ 438 (723)
T KOG3359|consen 420 SGFEGDANDLWRVEIVKKK 438 (723)
T ss_pred cccccCccccEEEEEecCC
Confidence 5 46899999976543
No 6
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.4e-23 Score=183.57 Aligned_cols=144 Identities=24% Similarity=0.367 Sum_probs=122.6
Q ss_pred eeEEEeeccc-CCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeC-CEEEEEeccC-CCceeecCCCCCC-CC
Q 030721 7 FRLHSHEVPY-GSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSG-TIIRLQHMRT-RKWLHSHLHASPI-SG 82 (172)
Q Consensus 7 ~~LHSh~~~y-~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g-~~I~L~H~~T-~~~Lhsh~~~~p~-S~ 82 (172)
|++|++..+- +.|+..++ +.|+..+.++..+ ..+..+.+| |+|+|||..| |.|||||...||. |+
T Consensus 264 F~vhf~~l~~sg~~d~~mp-s~fq~~L~g~~v~----------~~~~~~~~g~S~itirh~~t~g~~LHSh~~~YP~gs~ 332 (699)
T COG1928 264 FYVHFNILTDSGPGDSFMP-SLFQATLKGNPVY----------LNSRDPAYGSSTITIRHAGTGGGYLHSHNQLYPEGSE 332 (699)
T ss_pred HhheeeeeccCCCcccccC-HHHHhhccCCccc----------ccceeeeeeeeEEEEeccCCccchhhcccCCCCCCcc
Confidence 5789998877 67899999 9999977777651 345677788 9999999999 6999999999999 57
Q ss_pred CeEEEEecCCCCCCCCCcEEEEEccCC----ceeeeCCeEEEEEccCCeeeeecCCCCCCCCC-CCeeEEEEcCC---CC
Q 030721 83 NLEISCFGGEEESDTGDYWRVMIEGSG----KTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAG-GQQEVCGVREK---RA 154 (172)
Q Consensus 83 ~qeVs~~~~~~~~d~~~~W~Ie~~~~~----~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~-~q~EV~c~~~~---~~ 154 (172)
|||||+|++ .|.||.|+||..+.+ .+++.|+.|||+|+.|||+|++|+.+ +|.+ +|.||||++.. ++
T Consensus 333 qqqvt~y~~---~d~NN~W~~e~~~~~~~~~~~l~~G~~vrL~H~~T~~~Lh~H~~~--~pvS~~~~EvS~yg~~~~gd~ 407 (699)
T COG1928 333 QQQVTGYGH---KDANNEWLIELSDENATQIEPLKDGQSVRLRHKYTGKNLHFHDVK--PPVSGNQYEVSGYGDSFEGDE 407 (699)
T ss_pred cceeecccc---cccccceeeeecccccccceeccCCcEEEEEEeeccceeecCCCC--CCCCCCceeeeeccccccCCc
Confidence 999999997 899999999965532 47899999999999999999999987 5663 57999999875 57
Q ss_pred CCcEEEEEeeeC
Q 030721 155 DNVWLAAEGVYL 166 (172)
Q Consensus 155 ~~~W~ve~~~~~ 166 (172)
++.|.||...-.
T Consensus 408 ~d~w~i~i~~~~ 419 (699)
T COG1928 408 KDDWIIEIVKDE 419 (699)
T ss_pred ccceeeEeeecc
Confidence 889999987654
No 7
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=99.83 E-value=9.7e-21 Score=144.01 Aligned_cols=108 Identities=29% Similarity=0.505 Sum_probs=94.4
Q ss_pred CceeeeCCEEEEEeccCCCceeecCCCCCCC-CCeEEEEecCCCCCCCCCcEEEEEcc-----CCceeeeCCeEEEEEcc
Q 030721 51 GDTIKSGTIIRLQHMRTRKWLHSHLHASPIS-GNLEISCFGGEEESDTGDYWRVMIEG-----SGKTWRQDQRIRLQHVD 124 (172)
Q Consensus 51 ~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S-~~qeVs~~~~~~~~d~~~~W~Ie~~~-----~~~~~~~~~~~rL~H~~ 124 (172)
...|.||++|+|.|..++-.||||+++|-.+ +||-||++.. ..|.|.+|+|.... .|++++.++.|||.|+.
T Consensus 23 e~~VTcgSvlKlln~~~~~RLHSHDVkYGSgSGQQSVTgv~~--~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~ 100 (211)
T KOG3358|consen 23 EDVVTCGSVLKLLNTKHKFRLHSHDVKYGSGSGQQSVTGVEG--VDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLK 100 (211)
T ss_pred CceEEhhhhHHhhccccceeeeccccCccCCCCcceeecccc--cccCcceEEEecCCCCcccCCCccccCCeEEEEEee
Confidence 3489999999999999999999999999874 7999998874 48999999998763 37899999999999999
Q ss_pred CCeeeeecCCCCCCCCCCCeeEEEEcCC---CCCCcEEEEE
Q 030721 125 TGGYLHSHPKKYQRIAGGQQEVCGVREK---RADNVWLAAE 162 (172)
Q Consensus 125 t~~~L~s~~~~lp~~~~~q~EV~c~~~~---~~~~~W~ve~ 162 (172)
||++|++|- +++|+++.|||+|.... |..+.|.|--
T Consensus 101 TgknLHSHh--f~sPlSgnqEVSafG~dgegDtgD~Wtvic 139 (211)
T KOG3358|consen 101 TGKNLHSHH--FTSPLSGNQEVSAFGEDGEGDTGDHWTVIC 139 (211)
T ss_pred cccchhhcc--cCCCCCCCeeEEeecccCCCCcccceEEEe
Confidence 999999995 56999999999999764 4567888743
No 8
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=99.62 E-value=1.3e-15 Score=96.89 Aligned_cols=53 Identities=28% Similarity=0.642 Sum_probs=46.1
Q ss_pred ceeeeCCEEEEEeccCCCceeecCCC-CCCC-CCeEEEEecCCCCCCCCCcEEEEE
Q 030721 52 DTIKSGTIIRLQHMRTRKWLHSHLHA-SPIS-GNLEISCFGGEEESDTGDYWRVMI 105 (172)
Q Consensus 52 ~~V~~g~~I~L~H~~T~~~Lhsh~~~-~p~S-~~qeVs~~~~~~~~d~~~~W~Ie~ 105 (172)
..|++||.|||+|+.||+|||+|+.+ +|.+ ++|||+|+++.. +|.++.|+|+.
T Consensus 2 ~~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~-~~~~~~W~ie~ 56 (57)
T smart00472 2 GFVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPA-GDANTLWLIEP 56 (57)
T ss_pred CccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCC-CCCCCcEEEEe
Confidence 57999999999999999999999999 5554 689999998642 48899999986
No 9
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=99.60 E-value=2.3e-15 Score=95.65 Aligned_cols=53 Identities=42% Similarity=0.629 Sum_probs=48.5
Q ss_pred ceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCC--CCCCcEEEEE
Q 030721 110 KTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK--RADNVWLAAE 162 (172)
Q Consensus 110 ~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~--~~~~~W~ve~ 162 (172)
..++.++.|||+|+.|||||++|+.++|+|+++|+||+|++.+ +.+++|.||.
T Consensus 2 ~~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 2 GFVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred CccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 4578899999999999999999999988999999999999877 5789999986
No 10
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=99.56 E-value=3.7e-15 Score=116.44 Aligned_cols=79 Identities=30% Similarity=0.467 Sum_probs=63.8
Q ss_pred CceeecCCCCCCC-CCeEEEEecCCCCCCCCCc-------------------EEEEEcc----CCceeeeCCeEEEEEcc
Q 030721 69 KWLHSHLHASPIS-GNLEISCFGGEEESDTGDY-------------------WRVMIEG----SGKTWRQDQRIRLQHVD 124 (172)
Q Consensus 69 ~~Lhsh~~~~p~S-~~qeVs~~~~~~~~d~~~~-------------------W~Ie~~~----~~~~~~~~~~~rL~H~~ 124 (172)
+|||||++.||.+ ++|||+||.. .|.++. |+||... .+..++.++.|||+|+.
T Consensus 1 g~Lhshd~~y~~~s~qqqvt~~~~---~d~nn~~~~~~~~~~~~~~~~~~slW~IE~~~~~~~~g~~v~~g~~iRL~H~~ 77 (190)
T PF02815_consen 1 GYLHSHDVIYPFHSEQQQVTTYPH---NDDNNEFRRTVNRESGAVATSANSLWQIEPVSEDPWSGGPVKWGDVIRLRHLS 77 (190)
T ss_dssp TCEECCEEEEEEETTTCEEEEEEE---SSTGCCEEEBEESSSGGGGGSGGGEEEEEE-TSSTTTTSB-BTTSEEEEEETT
T ss_pred CeeEEEeeCCCCCCCcceEEEECc---cCCCccccceeeeeccccccccccceEEecCCCCcccCCcccCCCEEEEEEcc
Confidence 5999999999995 6899999985 677777 9999833 26688889999999999
Q ss_pred CCeeeeecCCCCCCCCC----CCeeEEEEcCC
Q 030721 125 TGGYLHSHPKKYQRIAG----GQQEVCGVREK 152 (172)
Q Consensus 125 t~~~L~s~~~~lp~~~~----~q~EV~c~~~~ 152 (172)
||+||++++.+ +|+. .++||+|+...
T Consensus 78 Tg~yL~~~~~~--~p~s~~~~~~~evs~~~~~ 107 (190)
T PF02815_consen 78 TGKYLHSHDVK--SPISETDDYNQEVSCFGDD 107 (190)
T ss_dssp TS-EEEEEEEE--ECCCTCGG-SEEEEEEEEE
T ss_pred CCCEEEEcccc--cccccccccCcceeeEeec
Confidence 99999999887 5553 37999998643
No 11
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=98.72 E-value=4.7e-08 Score=78.00 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=74.5
Q ss_pred CceeeeCCEEEEEeccCCCceeecCCC-CCCC-CCeEEEEecCCCCCC-CCCcEEEEEcc----CCceeeeCCeEEEEEc
Q 030721 51 GDTIKSGTIIRLQHMRTRKWLHSHLHA-SPIS-GNLEISCFGGEEESD-TGDYWRVMIEG----SGKTWRQDQRIRLQHV 123 (172)
Q Consensus 51 ~~~V~~g~~I~L~H~~T~~~Lhsh~~~-~p~S-~~qeVs~~~~~~~~d-~~~~W~Ie~~~----~~~~~~~~~~~rL~H~ 123 (172)
+.+|.||+.|.|+|+.|++||...... +-.. ....|..-.. +. .+.+|+|.+.- .|+.+..++.|.|..+
T Consensus 95 g~~v~YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~---~~~e~s~F~i~P~~k~r~~Gd~V~~gD~i~l~~~ 171 (214)
T PF08709_consen 95 GTPVLYGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEF---SSGENSWFRIHPAYKQRSEGDPVRYGDQIILISV 171 (214)
T ss_dssp T-B-BTTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESS---SSSGGGEEEEEESSTTS-TTSB-BTT-EEEEEET
T ss_pred CCEEEecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccC---CCcccEEEEEEcchheEcCCCeeeeCCEEEEEEC
Confidence 456999999999999999999998765 3333 3688888664 33 66899999853 4789999999999999
Q ss_pred cCCeeeeec-CCCCCCCCCCCeeEEEEcCCCCCCcEEEEEe
Q 030721 124 DTGGYLHSH-PKKYQRIAGGQQEVCGVREKRADNVWLAAEG 163 (172)
Q Consensus 124 ~t~~~L~s~-~~~lp~~~~~q~EV~c~~~~~~~~~W~ve~~ 163 (172)
.++.||+.+ ...+. -..+..||.|. ...+.|+|..-
T Consensus 172 ~~~~~Lh~s~~~~~~-~~~~~~eVn~~---~~~T~w~i~~~ 208 (214)
T PF08709_consen 172 STEQYLHVSSNKSLS-DNKGCKEVNAS---FQQTSWKINPF 208 (214)
T ss_dssp TT-SEEEEEEEEEES-SSSSCEEEEES---SS--EEEEEEE
T ss_pred CCCCcccccCccccc-cCCCceEEEEE---ccccceEEEEE
Confidence 999999943 22221 12344899985 46889998653
No 12
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=98.20 E-value=1.1e-05 Score=64.40 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=68.6
Q ss_pred CccCCCeeEEEeecccC-CCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCC--
Q 030721 1 MHEKTKFRLHSHEVPYG-SGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHA-- 77 (172)
Q Consensus 1 ~h~~t~~~LHSh~~~y~-~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~-- 77 (172)
+|+.++-||.-...... .....+.|++-..+.+++.+|+|.|...- ...++.|+.||.|.|..+.++.|||.....
T Consensus 107 ~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~~e~s~F~i~P~~k~-r~~Gd~V~~gD~i~l~~~~~~~~Lh~s~~~~~ 185 (214)
T PF08709_consen 107 LHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSSGENSWFRIHPAYKQ-RSEGDPVRYGDQIILISVSTEQYLHVSSNKSL 185 (214)
T ss_dssp EETTTTEEEEEEEEEESSSSTTSEEEEEESSSSSGGGEEEEEESSTT-S-TTSB-BTT-EEEEEETTT-SEEEEEEEEEE
T ss_pred eEeCccEEEEEeCCCCCcccccceEEEeccCCCcccEEEEEEcchhe-EcCCCeeeeCCEEEEEECCCCCcccccCcccc
Confidence 48899999987776632 24556888998885547899999987654 346889999999999999999999943221
Q ss_pred CCCCCCeEEEEecCCCCCCCCCcEEEEEc
Q 030721 78 SPISGNLEISCFGGEEESDTGDYWRVMIE 106 (172)
Q Consensus 78 ~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~ 106 (172)
....+.+||.+. .....|.|.+.
T Consensus 186 ~~~~~~~eVn~~------~~~T~w~i~~~ 208 (214)
T PF08709_consen 186 SDNKGCKEVNAS------FQQTSWKINPF 208 (214)
T ss_dssp SSSSSCEEEEES------SS--EEEEEEE
T ss_pred ccCCCceEEEEE------ccccceEEEEE
Confidence 111235899873 45678999765
No 13
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=97.91 E-value=9.3e-06 Score=77.76 Aligned_cols=99 Identities=20% Similarity=0.360 Sum_probs=75.2
Q ss_pred cCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCCCCeEEEEecC---C--CCCCCCCcEEEEEc
Q 030721 32 DDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGG---E--EESDTGDYWRVMIE 106 (172)
Q Consensus 32 ~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~---~--~~~d~~~~W~Ie~~ 106 (172)
...|..|.|.........+...++-||+|||.|.+..+||....++- ++.|-.--. + ....+...|.||++
T Consensus 219 ~N~nTsWki~lFm~~~en~e~~lKgGDVVRLFHAeQekFLT~Dey~k----q~hVFLRtT~RqSAtsATSSkALWEveVV 294 (2706)
T KOG3533|consen 219 LNCNTSWKIFLFMLFDENQENSLKGGDVVRLFHAEQEKFLTCDEYPK----QNHVFLRTTNRQSATSATSSKALWEVEVV 294 (2706)
T ss_pred cCCCCcceeeeeeeeccchhhhhccCcEEEeecccccceeehhcccc----cceEEEeccCCcccccccccccceeEEEE
Confidence 45688999998887767778899999999999999999999976642 333332111 0 12567789999986
Q ss_pred c----CCceeeeCCeEEEEEccCCeeeeecCC
Q 030721 107 G----SGKTWRQDQRIRLQHVDTGGYLHSHPK 134 (172)
Q Consensus 107 ~----~~~~~~~~~~~rL~H~~t~~~L~s~~~ 134 (172)
. .|..-..++.+||+|..||-||.+...
T Consensus 295 qhd~cRGGag~WNslyRFKHLATg~YLaAE~~ 326 (2706)
T KOG3533|consen 295 QHDPCRGGAGKWNSLYRFKHLATGMYLAAEPS 326 (2706)
T ss_pred ecCCCCCcccchhhhhhhhhhcccceeecCCC
Confidence 4 344556789999999999999998643
No 14
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.58 E-value=0.002 Score=48.24 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=78.5
Q ss_pred eeEEEeeccc-CCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCC-CCe
Q 030721 7 FRLHSHEVPY-GSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPIS-GNL 84 (172)
Q Consensus 7 ~~LHSh~~~y-~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S-~~q 84 (172)
..|-||..+| -.......|+.-.....-|..|.|++... ..+.|+|+ ..-|+||...+.++|+. ...
T Consensus 10 VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~----------~~~~v~L~-saYGrYL~as~~~~~lG~~G~ 78 (142)
T PF04601_consen 10 VRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPG----------SPNYVRLR-SAYGRYLAASDEPALLGHTGR 78 (142)
T ss_pred EEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecC----------CCCEEEEe-eccCceEeccCCcCCCCCCCC
Confidence 3566666666 22234466777777677899999986532 13578887 47899999999988885 244
Q ss_pred EEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEc
Q 030721 85 EISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVR 150 (172)
Q Consensus 85 eVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~ 150 (172)
.|.-.... ..|..-.|. + ++.+..|+|+|. .|+||.+++. +|+|-.. |+...
T Consensus 79 ~v~Q~~~~-~~d~~~~We--p------vr~g~~V~Lr~~-~gr~LRANG~-~~~Wrn~---VT~D~ 130 (142)
T PF04601_consen 79 RVVQTDPD-RLDSSVEWE--P------VRDGFYVKLRHR-SGRYLRANGG-YPPWRNS---VTVDV 130 (142)
T ss_pred EEEecCCc-cCCCCceEE--E------ecCCCEEEEEec-CCceEEcCCC-CCCCcce---EEecC
Confidence 44433321 245555675 2 345678999986 4899999986 5777433 66544
No 15
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=97.33 E-value=0.0016 Score=63.10 Aligned_cols=150 Identities=15% Similarity=0.242 Sum_probs=99.7
Q ss_pred ccCCCeeEEEeecccCC--CCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCC-Ccee-ecCCC
Q 030721 2 HEKTKFRLHSHEVPYGS--GSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTR-KWLH-SHLHA 77 (172)
Q Consensus 2 h~~t~~~LHSh~~~y~~--gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~-~~Lh-sh~~~ 77 (172)
|+.++-||---. ..|. --..|.|++-.. ..+.+++.|+|+..- ...++.|-.||.|.|-=++-| .-|| ...+.
T Consensus 130 H~KSNKYlTVnK-rlPallEkNAMrV~LDaa-GNEGSWfyI~PfyKl-rsiGDnVvvGdKv~L~Pvna~~Q~lHvas~~e 206 (2706)
T KOG3533|consen 130 HVKSNKYLTVNK-RLPALLEKNAMRVYLDAA-GNEGSWFYIEPFYKL-RSIGDNVVVGDKVSLIPVNAGTQPLHVASSFE 206 (2706)
T ss_pred hhccCceEEEec-cChhhHhhcceEEEeecc-CCccceEEeehhHHh-hccCCceEEcceEEEcccCCCCccchhhhccc
Confidence 445555554332 1132 345789999988 667788888887643 236788999999999988887 8888 33343
Q ss_pred CCCC-CCeEEEEecCCCCCCCCCcEEEEEc-----cCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEE--
Q 030721 78 SPIS-GNLEISCFGGEEESDTGDYWRVMIE-----GSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGV-- 149 (172)
Q Consensus 78 ~p~S-~~qeVs~~~~~~~~d~~~~W~Ie~~-----~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~-- 149 (172)
.+-. +-.||-|. ..+..|.|-.- +....++.|+.|||.|....+||.....+ +|+-|.--
T Consensus 207 L~DnpgckEVN~~------N~nTsWki~lFm~~~en~e~~lKgGDVVRLFHAeQekFLT~Dey~------kq~hVFLRtT 274 (2706)
T KOG3533|consen 207 LLDNPGCKEVNCL------NCNTSWKIFLFMLFDENQENSLKGGDVVRLFHAEQEKFLTCDEYP------KQNHVFLRTT 274 (2706)
T ss_pred cCCCCCccccccc------CCCCcceeeeeeeeccchhhhhccCcEEEeecccccceeehhccc------ccceEEEecc
Confidence 3333 35788775 35677987542 22457899999999999999999986432 44444321
Q ss_pred ------cCCCCCCcEEEEEeeeC
Q 030721 150 ------REKRADNVWLAAEGVYL 166 (172)
Q Consensus 150 ------~~~~~~~~W~ve~~~~~ 166 (172)
......++|-||-..+-
T Consensus 275 ~RqSAtsATSSkALWEveVVqhd 297 (2706)
T KOG3533|consen 275 NRQSATSATSSKALWEVEVVQHD 297 (2706)
T ss_pred CCcccccccccccceeEEEEecC
Confidence 11135679999876543
No 16
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=97.30 E-value=0.00016 Score=69.74 Aligned_cols=119 Identities=24% Similarity=0.356 Sum_probs=73.7
Q ss_pred CCCeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCCCC
Q 030721 4 KTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGN 83 (172)
Q Consensus 4 ~t~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~ 83 (172)
++..|||-. |+.|+-+-- ..|.. .+|.+-|.-..+.....++--||++||.|.....-|..-.-.---++.
T Consensus 188 sserylhls---~~ng~i~vd-aaf~q-----tlw~v~p~~sgs~~~egyligg~v~rl~hghmdecltips~d~~d~q~ 258 (5019)
T KOG2243|consen 188 SSERYLHLS---VGNGNIHVD-AAFMQ-----TLWNVAPICSGSEAAEGYLIGGDVLRLFHGHMDECLTIPSGDHGDEQH 258 (5019)
T ss_pred cccceEEEE---ecCCceeec-HHHHH-----HHhccCCCcCCchhhhceeecchHHHHhccCccceeecCCCCccchhh
Confidence 445566653 344543222 34444 689988776554445668889999999998876666431111000111
Q ss_pred eEEEEecC-CCCCCCCCcEEEEEcc---CCceeeeCCeEEEEEccCCeeeeec
Q 030721 84 LEISCFGG-EEESDTGDYWRVMIEG---SGKTWRQDQRIRLQHVDTGGYLHSH 132 (172)
Q Consensus 84 qeVs~~~~-~~~~d~~~~W~Ie~~~---~~~~~~~~~~~rL~H~~t~~~L~s~ 132 (172)
..| -|.. .....+...|++|... .|..++.|..|||+|+.||.||.-.
T Consensus 259 r~i-~ye~g~~~~~a~slwr~e~lriawsgs~irwgq~frlrh~ttg~ylal~ 310 (5019)
T KOG2243|consen 259 RRI-FYEAGAAGTHARSLWRLEPLRIAWSGSHIRWGQAFRLRHLTTGHYLALM 310 (5019)
T ss_pred eee-eeeccccccchhhhhcccceeEEeccCccccCcceeeeeccccceeeee
Confidence 122 1221 1124466899998754 3677899999999999999999864
No 17
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.00 E-value=0.014 Score=43.74 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=58.3
Q ss_pred eeeCCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecC
Q 030721 54 IKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHP 133 (172)
Q Consensus 54 V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~ 133 (172)
..+|..||||. ..++|||..+-.. -|+.-.. -...|..|.||+..++ ...|+|+ ...|+||..++
T Consensus 4 F~d~~~VRLRS-~~~kYL~ADeDg~------~Vs~~~~--~~s~na~W~Ve~v~~~-----~~~v~L~-saYGrYL~as~ 68 (142)
T PF04601_consen 4 FPDGKHVRLRS-HHGKYLHADEDGE------GVSQDRR--GASLNAAWTVERVPGS-----PNYVRLR-SAYGRYLAASD 68 (142)
T ss_pred cCCCCEEEEEe-cCCCEEEEcCCCC------eEEECCC--CCCCcceEEEEEecCC-----CCEEEEe-eccCceEeccC
Confidence 45788999999 8899999976432 3433222 2457789999987542 3567886 57999999998
Q ss_pred CCCCCCCCCCeeEE-EEcC-CCCCCcEEE
Q 030721 134 KKYQRIAGGQQEVC-GVRE-KRADNVWLA 160 (172)
Q Consensus 134 ~~lp~~~~~q~EV~-c~~~-~~~~~~W~v 160 (172)
..+| ++..-..|. +... .+....|..
T Consensus 69 ~~~~-lG~~G~~v~Q~~~~~~d~~~~Wep 96 (142)
T PF04601_consen 69 EPAL-LGHTGRRVVQTDPDRLDSSVEWEP 96 (142)
T ss_pred CcCC-CCCCCCEEEecCCccCCCCceEEE
Confidence 7654 232222333 3222 244557754
No 18
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.82 E-value=0.28 Score=34.03 Aligned_cols=102 Identities=13% Similarity=0.285 Sum_probs=65.9
Q ss_pred CCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeee
Q 030721 35 NSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQ 114 (172)
Q Consensus 35 n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~ 114 (172)
|-.|.|.+... .+...+|+++.+|++|-...... ...-.|..+.. .+..+-.|+|+...+
T Consensus 2 nQ~W~~~~~~~----------~~g~Y~i~n~~sg~~L~v~~~~~--~~g~~v~~~~~--~~~~~Q~W~i~~~~~------ 61 (105)
T PF14200_consen 2 NQQWTFTPVGD----------SDGYYKIRNVNSGKYLDVAGGST--ANGTNVQQWTC--NGNDNQQWKIEPVGD------ 61 (105)
T ss_dssp GGEEEEEEEET----------TTTEEEEEETTTTEEEEEGCTTC--STTEBEEEEES--SSSGGGEEEEEESTT------
T ss_pred CCEEEEEEecC----------CCCEEEEEECCCCCEEEeCCCCc--CCCcEEEEecC--CCCcCcEEEEEEecC------
Confidence 45688875321 15569999999999998755321 22344555543 257788999988653
Q ss_pred CCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcC-C-CCCCcEEEE
Q 030721 115 DQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE-K-RADNVWLAA 161 (172)
Q Consensus 115 ~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~-~-~~~~~W~ve 161 (172)
..++|+++.++.+|-..+.. .+ .-..|..... . ..+-.|+++
T Consensus 62 -g~y~I~n~~s~~~Ldv~~~~-~~---~g~~v~~~~~~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 62 -GYYRIRNKNSGKVLDVAGGS-TA---NGTNVQQWEYDNGSDNQQWKLE 105 (105)
T ss_dssp -SEEEEEETSTTEEEEEGGGS-SS---TTEBEEEEE-STSSGGGEEEEE
T ss_pred -CeEEEEECCCCcEEEECCCC-CC---CCCEEEEEeCCCCCccCEEEeC
Confidence 35999999999999976533 11 2234555443 2 456789875
No 19
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.08 E-value=0.15 Score=50.60 Aligned_cols=117 Identities=17% Similarity=0.275 Sum_probs=75.8
Q ss_pred CCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCC----
Q 030721 34 ANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSG---- 109 (172)
Q Consensus 34 ~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~---- 109 (172)
+--+|+|.|+... ...+..|+-||.+.|..+.+.+|||-.-- .++-+|-+. =....|.|.+.+.|
T Consensus 157 eacwwtihpaskq-rsegekvrigddlilvsvsserylhls~~----ng~i~vdaa------f~qtlw~v~p~~sgs~~~ 225 (5019)
T KOG2243|consen 157 EACWWTIHPASKQ-RSEGEKVRIGDDLILVSVSSERYLHLSVG----NGNIHVDAA------FMQTLWNVAPICSGSEAA 225 (5019)
T ss_pred ceeeEEecccccc-cccCceeeecCceEEEEecccceEEEEec----CCceeecHH------HHHHHhccCCCcCCchhh
Confidence 3458999877644 34688999999999999999999997422 134455321 23468998777654
Q ss_pred -ceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcC----CCCCCcEEEEEee
Q 030721 110 -KTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE----KRADNVWLAAEGV 164 (172)
Q Consensus 110 -~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~----~~~~~~W~ve~~~ 164 (172)
.++-.|+.+||.|--....|..-.. +-+..|.--.-+.. ...+.+|++|...
T Consensus 226 egyligg~v~rl~hghmdecltips~---d~~d~q~r~i~ye~g~~~~~a~slwr~e~lr 282 (5019)
T KOG2243|consen 226 EGYLIGGDVLRLFHGHMDECLTIPSG---DHGDEQHRRIFYEAGAAGTHARSLWRLEPLR 282 (5019)
T ss_pred hceeecchHHHHhccCccceeecCCC---Cccchhheeeeeeccccccchhhhhccccee
Confidence 3677889999999876655554221 12333422222211 2468899998543
No 20
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=90.29 E-value=4.9 Score=28.77 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=39.6
Q ss_pred CCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCC
Q 030721 67 TRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPK 134 (172)
Q Consensus 67 T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~ 134 (172)
||.+|..++ +..|.+.++. .+....|.|+..+. ..|+|+++.++.||+-.+.
T Consensus 9 ~~~~L~i~~-------~g~V~gt~~~--~~~~s~~~i~~~~~-------g~V~i~~~~s~~YLcmn~~ 60 (122)
T PF00167_consen 9 TGYFLQINP-------NGTVDGTGDD--NSPYSVFEIHSVGF-------GVVRIRGVKSCRYLCMNKC 60 (122)
T ss_dssp TSEEEEEET-------TSBEEEESST--TSTTGEEEEEEEET-------TEEEEEETTTTEEEEEBTT
T ss_pred CCeEEEECC-------CCeEeCCCCc--CcceeEEEEEeccc-------eEEEEEEecceEEEEECCC
Confidence 388887754 3478887752 57778899887633 4899999999999998753
No 21
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=86.07 E-value=9.6 Score=26.73 Aligned_cols=58 Identities=10% Similarity=0.253 Sum_probs=38.3
Q ss_pred EEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecC
Q 030721 59 IIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHP 133 (172)
Q Consensus 59 ~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~ 133 (172)
.|+|+.. +|+||..-.-. ..|.+.... ......|.++... ...+.|+- ..|+||...+
T Consensus 3 ~v~Lrs~-~gkyl~~~~~g------~~v~a~~~~--~~~~e~F~l~~~~-------~g~v~Lrs-~~G~yls~~~ 60 (119)
T cd00257 3 QVVLRSV-NGRYLSAEAGG------DKVDANRDS--LKGDETFTLEFDN-------TGKYALRS-HDGKYLSADS 60 (119)
T ss_pred EEEEEEc-CCCEEEEeccC------CEEEEcCcc--CCCceEEEEEECC-------CCeEEEEE-CCCcEEEEEC
Confidence 5889998 89999774421 256665431 2235678887643 35677776 6899998753
No 22
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=84.15 E-value=12 Score=26.20 Aligned_cols=98 Identities=9% Similarity=0.101 Sum_probs=56.6
Q ss_pred ceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEE
Q 030721 23 QSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWR 102 (172)
Q Consensus 23 q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~ 102 (172)
..|.+-+.....-..|.++.... +..|.|| ...|+||..-. +..|.+..+ ..++...|.
T Consensus 12 ~~l~an~~~~~~~e~f~le~~~~-----------~~~v~lr-s~~GkYls~~~-------~G~v~~~~~--~~~~~~~F~ 70 (111)
T PF06268_consen 12 AHLNANRASLSDWETFQLEFDDG-----------SYKVALR-SHNGKYLSVDS-------DGSVVADSE--TPGPDEFFE 70 (111)
T ss_dssp CBEEEEESSSSCGGSEEEEEETT-----------EEEEEEE-CTTSEEEEEET-------TSEEEEEES--SSSGGGCBE
T ss_pred CEEECChhcCcccEEEEEEEECC-----------CCEEEEE-cCCCCEEEEcC-------CCeEEecCC--CCCCCcEEE
Confidence 33455543344456677762221 4556677 56799997522 335666654 245667777
Q ss_pred EEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcCC-CCCCcEE
Q 030721 103 VMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK-RADNVWL 159 (172)
Q Consensus 103 Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~~-~~~~~W~ 159 (172)
|+.. ...-++....|+||...... -+.|.... ...++|.
T Consensus 71 i~~~---------~~~~~~~~~nGkYl~~~~~g---------~l~a~~~~~~~~elf~ 110 (111)
T PF06268_consen 71 IEWH---------GGKVALRASNGKYLSAGPNG---------QLKANATSPGKDELFE 110 (111)
T ss_dssp EEEE---------TTEEEEECTTSCEEEEETTT---------EEEEEESSSSGGGEEE
T ss_pred EEEC---------CCEEEEECCCCCEEeeCCCC---------eEEEcCCCCCcceEEe
Confidence 7664 22335677899999965433 34565433 5566775
No 23
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=80.26 E-value=20 Score=25.98 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=36.4
Q ss_pred CCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCC
Q 030721 68 RKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPK 134 (172)
Q Consensus 68 ~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~ 134 (172)
+.+|...+ +-.|.+..+ ..+....|.|.... ...|+|+++.|+.||+-+..
T Consensus 8 ~~~L~I~~-------dG~V~Gt~~--~~~~~s~l~~~s~~-------~g~v~i~~v~s~~YLCmn~~ 58 (123)
T cd00058 8 GFHLQILP-------DGTVDGTRD--DSSSYTILERIAVA-------VGVVSIKGVASCRYLCMNKC 58 (123)
T ss_pred CeEEEEcC-------CCcEecccC--CCCCCceEEEEECC-------CCEEEEEEcccceEEEECCC
Confidence 66776643 345766664 24567788887764 35889999999999998754
No 24
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=73.77 E-value=28 Score=24.32 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCC
Q 030721 57 GTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKY 136 (172)
Q Consensus 57 g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~l 136 (172)
+..|+||- ..|+||...+. -.|++... .+....|.+|...+ ..+.|+-. +|+||.+.+..
T Consensus 43 ~g~v~Lrs-~~G~yls~~~~-------g~l~~~~~---~~~~e~F~~e~~~~-------g~~al~~~-~G~yl~~~~~g- 102 (119)
T cd00257 43 TGKYALRS-HDGKYLSADSD-------GGVQLEGH---PNADCRFTLEFHGD-------GKWALRAE-NGRYLGGDGSG- 102 (119)
T ss_pred CCeEEEEE-CCCcEEEEECC-------CCEEecCC---CCCCcEEEEEECCC-------CeEEEEcC-CCCEEeecCCC-
Confidence 67789996 68999988532 13444332 34667899887643 34666644 89999986422
Q ss_pred CCCCCCCeeEEEEcCC-CCCCcEE
Q 030721 137 QRIAGGQQEVCGVREK-RADNVWL 159 (172)
Q Consensus 137 p~~~~~q~EV~c~~~~-~~~~~W~ 159 (172)
-++|.... .+...|.
T Consensus 103 --------~l~~~~~~~~~~e~f~ 118 (119)
T cd00257 103 --------TLKASSETVGPDELFE 118 (119)
T ss_pred --------eEEEecCCCCccceec
Confidence 35666543 4455553
No 25
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=63.90 E-value=53 Score=23.78 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=34.0
Q ss_pred cCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCC
Q 030721 66 RTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPK 134 (172)
Q Consensus 66 ~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~ 134 (172)
.++.+|..++ +-.|.+..+ ..+....|.+..... ..|+|+++.|+.||+-+..
T Consensus 10 ~~~~~L~I~~-------~G~V~Gt~~--~~~~~~ile~~s~~~-------g~V~ik~~~s~~YLCmn~~ 62 (126)
T smart00442 10 RNGQHLQILP-------DGTVDGTRD--ESSSFTILEIIAVAV-------GVVAIKGVASCRYLCMNKC 62 (126)
T ss_pred CCCeEEEEcC-------CceEecccC--CCCcceEEEEEeccC-------CEEEEEEcccceEEEECCC
Confidence 3457787764 234555443 234556666655432 4689999999999998644
No 26
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=63.89 E-value=43 Score=22.75 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecCCCCCCCCCCCeeEEEEcC-CCCCCcEEEEE
Q 030721 98 GDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVRE-KRADNVWLAAE 162 (172)
Q Consensus 98 ~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~~~lp~~~~~q~EV~c~~~-~~~~~~W~ve~ 162 (172)
+..|.|...++. +..++|+++.+|.+|...+.. ...-.-|.-... ......|+|+.
T Consensus 2 nQ~W~~~~~~~~-----~g~Y~i~n~~sg~~L~v~~~~----~~~g~~v~~~~~~~~~~Q~W~i~~ 58 (105)
T PF14200_consen 2 NQQWTFTPVGDS-----DGYYKIRNVNSGKYLDVAGGS----TANGTNVQQWTCNGNDNQQWKIEP 58 (105)
T ss_dssp GGEEEEEEEETT-----TTEEEEEETTTTEEEEEGCTT----CSTTEBEEEEESSSSGGGEEEEEE
T ss_pred CCEEEEEEecCC-----CCEEEEEECCCCCEEEeCCCC----cCCCcEEEEecCCCCcCcEEEEEE
Confidence 456888775421 356999999999999986532 111112332222 14566888765
No 27
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=51.06 E-value=29 Score=25.91 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=21.2
Q ss_pred ceee-eCCEEEEEeccCCCceeecCCCC
Q 030721 52 DTIK-SGTIIRLQHMRTRKWLHSHLHAS 78 (172)
Q Consensus 52 ~~V~-~g~~I~L~H~~T~~~Lhsh~~~~ 78 (172)
.+|+ .+.+|+|+|+.+|.|++.-...-
T Consensus 89 ~Pv~~d~~~i~lr~vq~~~~~~r~t~~~ 116 (139)
T smart00791 89 RPLYVEMKKIRLLNVQLGHYTKRYTVGK 116 (139)
T ss_pred eEEeccCceEEEEEecCCceEEeecCCC
Confidence 4555 67889999999999998865433
No 28
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=50.20 E-value=24 Score=25.11 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCeeEEEeecccCCCCCCceecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecCCCCCCCCCe
Q 030721 5 TKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNL 84 (172)
Q Consensus 5 t~~~LHSh~~~y~~gs~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~q 84 (172)
||++|.-++ .| .|.+-....+.+..|.|++. .. ..|+|+++.|++||=... .-
T Consensus 9 ~~~~L~i~~----~g----~V~gt~~~~~~~s~~~i~~~-----------~~-g~V~i~~~~s~~YLcmn~-------~G 61 (122)
T PF00167_consen 9 TGYFLQINP----NG----TVDGTGDDNSPYSVFEIHSV-----------GF-GVVRIRGVKSCRYLCMNK-------CG 61 (122)
T ss_dssp TSEEEEEET----TS----BEEEESSTTSTTGEEEEEEE-----------ET-TEEEEEETTTTEEEEEBT-------TS
T ss_pred CCeEEEECC----CC----eEeCCCCcCcceeEEEEEec-----------cc-eEEEEEEecceEEEEECC-------CC
Confidence 356665553 22 45555554577888888632 33 499999999999996643 22
Q ss_pred EEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEc--cCCeeeeecCC
Q 030721 85 EISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHV--DTGGYLHSHPK 134 (172)
Q Consensus 85 eVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~--~t~~~L~s~~~ 134 (172)
.+.+-.. ...+-.|..+...+ .-..+.-. ..+.||.-...
T Consensus 62 ~ly~~~~---~~~~C~F~e~~~~n-------~y~~~~s~~~~~~~yla~~~~ 103 (122)
T PF00167_consen 62 RLYGSKN---FNKDCVFREELLEN-------GYNTYESAKYGRGWYLAFNRR 103 (122)
T ss_dssp BEEEESS---BTGGGEEEEEEETT-------SEEEEEESTTGTTEBCEBCTT
T ss_pred eEccccc---cCCCceEEEEEccC-------CEEEEEeccCCccEEEEECCC
Confidence 3333222 22356666544322 12222222 46788876543
No 29
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=45.42 E-value=36 Score=24.60 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=27.8
Q ss_pred ecccccccCCCCceEEeecCCCCCCCCceeeeCCEEEEEeccCCCceeecC
Q 030721 25 VTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHL 75 (172)
Q Consensus 25 Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~V~~g~~I~L~H~~T~~~Lhsh~ 75 (172)
|.+-....+..+.|.|... . ...|+|+++.|++||=...
T Consensus 19 V~Gt~~~~~~~s~l~~~s~-----------~-~g~v~i~~v~s~~YLCmn~ 57 (123)
T cd00058 19 VDGTRDDSSSYTILERIAV-----------A-VGVVSIKGVASCRYLCMNK 57 (123)
T ss_pred EecccCCCCCCceEEEEEC-----------C-CCEEEEEEcccceEEEECC
Confidence 4555554567788888632 1 5589999999999997753
No 30
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=35.37 E-value=1.9e+02 Score=21.99 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=34.2
Q ss_pred CEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccC------C------ceeee----CCeEEEE
Q 030721 58 TIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGS------G------KTWRQ----DQRIRLQ 121 (172)
Q Consensus 58 ~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~------~------~~~~~----~~~~rL~ 121 (172)
..|+|++.-.+||-.-. .+|++||+-..++ . .+++. ...|+|+
T Consensus 55 G~V~Ir~~y~nKfWrr~---------------------s~n~~WI~ada~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~ 113 (153)
T PF07468_consen 55 GLVHIRCCYNNKFWRRS---------------------SPNDYWIWADADDPDEDQSKPSCTLFEPVKVDVKDFNVIALR 113 (153)
T ss_dssp T-EEEEETTTTEEEEES---------------------CCC--BEEEEESSHHH-TCSTCGG-EEEEESCCCETTEEEEE
T ss_pred CeEEEEeccCCceeEeC---------------------CCCCcEEEecCCCcccccCCCCceEEEEEEecCCCccEEEEE
Confidence 38999999999998631 2334666644332 0 23333 3689999
Q ss_pred EccCCeeeeec
Q 030721 122 HVDTGGYLHSH 132 (172)
Q Consensus 122 H~~t~~~L~s~ 132 (172)
|++.+.|..-.
T Consensus 114 ~~~n~~~~~r~ 124 (153)
T PF07468_consen 114 NMQNGHFCKRL 124 (153)
T ss_dssp ETTTTEEEEEE
T ss_pred ecCCceEEEEE
Confidence 99999888753
No 31
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=33.18 E-value=2.1e+02 Score=21.40 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=36.7
Q ss_pred eeCCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCC-C-CCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeec
Q 030721 55 KSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEE-E-SDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSH 132 (172)
Q Consensus 55 ~~g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~-~-~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~ 132 (172)
.+...|+|++.-++||-... | .=|.+-++.. + .++..+|. +. ......|+|+|++.|.|++.-
T Consensus 48 ~~dg~V~ik~~~~nKfWr~s----~----~WI~a~s~d~~e~~sscTLF~--Pv-----~~d~~~i~lr~vq~~~~~~r~ 112 (139)
T smart00791 48 TYNGLVHIKSNYTNKFWRLS----H----YWITADANDPDENKSACTLFR--PL-----YVEMKKIRLLNVQLGHYTKRY 112 (139)
T ss_pred cCCCcEEEEecCCCceEccC----C----CEEEecCCCCccCCCcccEEe--EE-----eccCceEEEEEecCCceEEee
Confidence 34558999999999986443 1 1233333211 0 11222222 11 114688999999999998864
No 32
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=30.98 E-value=2.6e+02 Score=21.88 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=31.5
Q ss_pred CCEEEEEeccCCCceeecCCCCCCCCCeEEEEecCCCCCCCCCcEEEEEccCCceeeeCCeEEEEEccCCeeeeecC
Q 030721 57 GTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHP 133 (172)
Q Consensus 57 g~~I~L~H~~T~~~Lhsh~~~~p~S~~qeVs~~~~~~~~d~~~~W~Ie~~~~~~~~~~~~~~rL~H~~t~~~L~s~~ 133 (172)
-..|.|+- ..|+||.+.. .-.|+|..+ .-.+...|.+...+++ .-+.....+|||....
T Consensus 38 ~~~iafKs-~~GkYLs~Dk-------~G~v~a~sd--AiGp~E~f~~V~~~~~--------~a~~~~~~~~FLs~~~ 96 (191)
T PF06229_consen 38 DEKIAFKS-GHGKYLSCDK-------DGIVSARSD--AIGPQEQFEPVFQDGK--------PALFSSSNNKFLSVDE 96 (191)
T ss_dssp SS-EEEEE-TTS-BEEE-S-------SSBEEE--S--S--TTTBEEEE-STT----------EEEE-TTS-BEEE-S
T ss_pred CCceEeec-cCccEEEEcC-------CCcEEEEee--cCCCceEEEEEECCCC--------eEEEecCCCeEEEEec
Confidence 34588888 4799998753 246777765 3556788998664332 2222227899999876
No 33
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=23.45 E-value=87 Score=22.00 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.6
Q ss_pred eCCEEEEEeccCCCceee
Q 030721 56 SGTIIRLQHMRTRKWLHS 73 (172)
Q Consensus 56 ~g~~I~L~H~~T~~~Lhs 73 (172)
-||.||+++..+++-+..
T Consensus 95 ~G~~I~V~N~~s~k~i~~ 112 (122)
T TIGR03170 95 VGDQIRVRNLSSGKIISG 112 (122)
T ss_pred CCCEEEEEECCCCCEEEE
Confidence 588899999888887754
No 34
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=20.61 E-value=3.1e+02 Score=20.11 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=25.2
Q ss_pred EEEEeccC-CCceeecCCCCCCC-CCeEEEEecCCCCCCCCCcEEE-EEc
Q 030721 60 IRLQHMRT-RKWLHSHLHASPIS-GNLEISCFGGEEESDTGDYWRV-MIE 106 (172)
Q Consensus 60 I~L~H~~T-~~~Lhsh~~~~p~S-~~qeVs~~~~~~~~d~~~~W~I-e~~ 106 (172)
|-|++.+| .+.|+.=+. -+. .-.+|+|+. .|....|+. ||.
T Consensus 17 vELKNget~nGhL~~cD~--wMNl~L~~Vi~ts----~Dgdkf~r~pEcY 60 (134)
T KOG3293|consen 17 VELKNGETYNGHLVNCDN--WMNLHLREVICTS----EDGDKFFRMPECY 60 (134)
T ss_pred EEecCCCEecceeecchh--hhhcchheeEEec----cCCCceeecceeE
Confidence 44555555 666665432 222 346999998 466667887 765
Done!