BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030722
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG
PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK
AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTLIATEH

High Scoring Gene Products

Symbol, full name Information P value
AT1G12250 protein from Arabidopsis thaliana 6.0e-32

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030722
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2202033 - symbol:AT1G12250 "AT1G12250" species...   350  6.0e-32   1


>TAIR|locus:2202033 [details] [associations]
            symbol:AT1G12250 "AT1G12250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009535 GO:GO:0009543 EMBL:AC022522
            eggNOG:COG1357 EMBL:AY142640 EMBL:AY035122 IPI:IPI00519055
            PIR:F86257 RefSeq:NP_563902.1 UniGene:At.19174
            ProteinModelPortal:Q8H1Q1 SMR:Q8H1Q1 IntAct:Q8H1Q1 STRING:Q8H1Q1
            PaxDb:Q8H1Q1 PRIDE:Q8H1Q1 ProMEX:Q8H1Q1 EnsemblPlants:AT1G12250.1
            GeneID:837778 KEGG:ath:AT1G12250 TAIR:At1g12250
            HOGENOM:HOG000239303 InParanoid:Q8H1Q1 OMA:GAYLEKA PhylomeDB:Q8H1Q1
            ProtClustDB:CLSN2687778 Genevestigator:Q8H1Q1 Uniprot:Q8H1Q1
        Length = 280

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/150 (53%), Positives = 96/150 (64%)

Query:    18 SSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--CAGPYAKLKNWRXXXXXX 75
             SS S+ PY  H   + L    Q+SS+  S+ +  D SN +  C    A+   W+      
Sbjct:    21 SSVSRSPY--H-FQRYLLRRLQLSSR--SNLEIKDSSNTREGCCSS-AESNTWKRILSAA 74

Query:    76 XXXXXXXXXXXXXXXLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTS 135
                            +A+LN++EA+TRGEFGIGSAAQ+GSADL K VH  ENFRRANFTS
Sbjct:    75 MAAAVIASSSGVPA-MAELNRFEADTRGEFGIGSAAQYGSADLSKTVHSNENFRRANFTS 133

Query:   136 ADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
             ADMRESDFSGS FNGAYLEKAVAYKANF+G
Sbjct:   134 ADMRESDFSGSTFNGAYLEKAVAYKANFSG 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       139   0.00091  102 3  11 22  0.45    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.50u 0.07s 11.57t   Elapsed:  00:00:08
  Total cpu time:  11.50u 0.07s 11.57t   Elapsed:  00:00:08
  Start:  Thu May  9 18:01:11 2013   End:  Thu May  9 18:01:19 2013

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