Query 030722
Match_columns 172
No_of_seqs 219 out of 1320
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15377 E3 ubiquitin-protein 99.2 7.1E-12 1.5E-16 118.4 3.8 79 93-171 181-271 (782)
2 PF13599 Pentapeptide_4: Penta 99.2 2.3E-11 4.9E-16 83.2 3.2 68 104-172 8-77 (78)
3 PF13599 Pentapeptide_4: Penta 99.2 3.7E-11 8.1E-16 82.1 4.2 63 109-171 4-67 (78)
4 PRK15377 E3 ubiquitin-protein 99.1 6.7E-11 1.5E-15 111.9 3.2 33 109-141 188-220 (782)
5 KOG1665 AFH1-interacting prote 99.0 2.7E-10 5.9E-15 95.2 3.7 62 109-170 224-285 (302)
6 PRK09718 hypothetical protein; 98.9 4.4E-10 9.4E-15 102.1 3.0 71 101-171 149-223 (512)
7 PRK09718 hypothetical protein; 98.8 4.2E-09 9.2E-14 95.8 3.9 63 109-171 168-233 (512)
8 PRK09716 hypothetical protein; 46.4 8.9 0.00019 33.1 0.8 50 117-166 152-201 (395)
9 TIGR01299 synapt_SV2 synaptic 43.2 26 0.00057 34.1 3.5 50 113-162 516-565 (742)
10 COG2372 CopC Uncharacterized p 22.0 1.5E+02 0.0032 22.9 3.8 15 87-101 24-38 (127)
No 1
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.21 E-value=7.1e-12 Score=118.42 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=36.4
Q ss_pred HhchhhhhcCCccCCC-CCceeccCcccceeeccceecCce-eccccccc----------ccccCcccccceecCccccC
Q 030722 93 DLNKYEAETRGEFGIG-SAAQFGSADLRKAVHVKENFRRAN-FTSADMRE----------SDFSGSKFNGAYLEKAVAYK 160 (172)
Q Consensus 93 ~l~~~~~~~~~~~~~~-~g~dF~~~dL~~a~F~~a~L~~an-Fs~A~L~~----------a~Fs~a~L~gA~f~~a~l~~ 160 (172)
.++....+..+|.+.+ .|++|.+++|.+++|.+++|++++ |.+|+|.+ ++|.+|+|++++|++++|.+
T Consensus 181 dl~~A~Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~ 260 (782)
T PRK15377 181 RLRQEAGEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSN 260 (782)
T ss_pred ccccCcCccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCC
Confidence 4444444455555555 555555555555555444444443 33333333 33333444444444444444
Q ss_pred ceecCCcCCCC
Q 030722 161 ANFTGTLIATE 171 (172)
Q Consensus 161 a~f~gAdLs~A 171 (172)
++|.+|+|.+|
T Consensus 261 AdFsgAdLkgA 271 (782)
T PRK15377 261 TKFSNSDMNEA 271 (782)
T ss_pred CEecCCCCCCC
Confidence 44444444443
No 2
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.15 E-value=2.3e-11 Score=83.20 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=45.3
Q ss_pred ccCCC-CCceeccCcccceeecccee-cCceecccccccccccCcccccceecCccccCceecCCcCCCCC
Q 030722 104 EFGIG-SAAQFGSADLRKAVHVKENF-RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTLIATEH 172 (172)
Q Consensus 104 ~~~~~-~g~dF~~~dL~~a~F~~a~L-~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdLs~Ad 172 (172)
+.+.. .+++|.+++|++++|.+++| .++.|++++|.+++|++++|.++.|.+++|.+++|++ +|.+++
T Consensus 8 f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~ 77 (78)
T PF13599_consen 8 FSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN 77 (78)
T ss_dssp EESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred EECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence 44444 56666666666666666666 6677777777777777777777777777777777766 676654
No 3
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.15 E-value=3.7e-11 Score=82.12 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=54.8
Q ss_pred CCceeccCcccceeeccceecCceeccccc-ccccccCcccccceecCccccCceecCCcCCCC
Q 030722 109 SAAQFGSADLRKAVHVKENFRRANFTSADM-RESDFSGSKFNGAYLEKAVAYKANFTGTLIATE 171 (172)
Q Consensus 109 ~g~dF~~~dL~~a~F~~a~L~~anFs~A~L-~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdLs~A 171 (172)
.+++|.+++|.+++|.+++|++++|.+++| .++.|++|+|.+++|+++++.+++|.+++|+++
T Consensus 4 ~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~ 67 (78)
T PF13599_consen 4 ENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNC 67 (78)
T ss_dssp ESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTE
T ss_pred EEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCC
Confidence 467888999999999999999999999998 999999999999999999999998888888876
No 4
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.07 E-value=6.7e-11 Score=111.90 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=13.0
Q ss_pred CCceeccCcccceeeccceecCceecccccccc
Q 030722 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRES 141 (172)
Q Consensus 109 ~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a 141 (172)
.+++|.++||.+++|.+++|.+++|++|+|+++
T Consensus 188 e~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~A 220 (782)
T PRK15377 188 EELTYADRDFSNADFRNINFSKINPSGFMLRDG 220 (782)
T ss_pred ccCCcCCCcCCCCCCCCCcccCCcchhhcccCC
Confidence 333444444444444444444433333333333
No 5
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=98.99 E-value=2.7e-10 Score=95.19 Aligned_cols=62 Identities=16% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCceeccCcccceeeccceecCceecccccccccccCcccccceecCccccCceecCCcCCC
Q 030722 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTLIAT 170 (172)
Q Consensus 109 ~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdLs~ 170 (172)
.|++|.++++.++++..++|+++++.+++|+++++.|+||++++|++++|+.++++|+++.+
T Consensus 224 kG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~ 285 (302)
T KOG1665|consen 224 KGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKE 285 (302)
T ss_pred ccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhh
Confidence 44444444444444444444444444444444444444444444444444444444444443
No 6
>PRK09718 hypothetical protein; Validated
Probab=98.93 E-value=4.4e-10 Score=102.12 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=41.8
Q ss_pred cCCccCCC-CCceeccCcccceeeccceecCceecccccccccccCcccccceecCccc---cCceecCCcCCCC
Q 030722 101 TRGEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---YKANFTGTLIATE 171 (172)
Q Consensus 101 ~~~~~~~~-~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l---~~a~f~gAdLs~A 171 (172)
...|.+.. .|++|++++|.++.|.+|+|++++|.+++|++++|++|+|.+++|.+|+| +++.|.+++|++|
T Consensus 149 rvsFinCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~A 223 (512)
T PRK09718 149 NVIFIKASGEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAV 223 (512)
T ss_pred ceEEEeccccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCC
Confidence 33444444 56666666666666666666666666666666666666666666666665 4555555555444
No 7
>PRK09718 hypothetical protein; Validated
Probab=98.78 E-value=4.2e-09 Score=95.77 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=37.3
Q ss_pred CCceeccCcccceeeccceecCceecccccccccccCccc---ccceecCccccCceecCCcCCCC
Q 030722 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKF---NGAYLEKAVAYKANFTGTLIATE 171 (172)
Q Consensus 109 ~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L---~gA~f~~a~l~~a~f~gAdLs~A 171 (172)
.++.|.+|+|.+++|.+++|++++|.+|+|.+++|.+|+| +++.|.+++|.+++|.+|+|+++
T Consensus 168 k~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~LkgV 233 (512)
T PRK09718 168 DTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTG 233 (512)
T ss_pred CCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcCCCc
Confidence 4445666666666666666666666666666666666665 45555555555555555555544
No 8
>PRK09716 hypothetical protein; Provisional
Probab=46.38 E-value=8.9 Score=33.05 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=33.0
Q ss_pred cccceeeccceecCceecccccccccccCcccccceecCccccCceecCC
Q 030722 117 DLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGT 166 (172)
Q Consensus 117 dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~f~gA 166 (172)
||+..++.+.+|..-+|++--|.++.+.--.|..++|++|++..++|...
T Consensus 152 dlssldlrni~l~~ydftdkhman~ilnpfkl~~t~ftnanmfqvnfvss 201 (395)
T PRK09716 152 DLSSLDLRNVDLDYYDFTDKHMANTILNPFKLNSTNFTNANMFQVNFVSS 201 (395)
T ss_pred ecccccccccceeecccchHhHHhhccCceecCCCCCcccceEEEEEEec
Confidence 44445555555555666666666666666677778888888877777543
No 9
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=43.23 E-value=26 Score=34.12 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=26.7
Q ss_pred eccCcccceeeccceecCceecccccccccccCcccccceecCccccCce
Q 030722 113 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 162 (172)
Q Consensus 113 F~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~ 162 (172)
|.+..++...|.++-|+.|.|.+..-.++.|..|++-+..|.+.++....
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 565 (742)
T TIGR01299 516 FIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYK 565 (742)
T ss_pred hhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhh
Confidence 34444444555555556666666555555566666555555554444333
No 10
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=22.04 E-value=1.5e+02 Score=22.92 Aligned_cols=15 Identities=20% Similarity=-0.033 Sum_probs=7.7
Q ss_pred chHHHHHhchhhhhc
Q 030722 87 NISALADLNKYEAET 101 (172)
Q Consensus 87 ~~pa~A~l~~~~~~~ 101 (172)
...|++.+.+..+..
T Consensus 24 ~a~AHa~l~~s~Pad 38 (127)
T COG2372 24 QAFAHAYLVSSNPAD 38 (127)
T ss_pred chhheeeeecCCCCC
Confidence 344666655544443
Done!