Query 030722
Match_columns 172
No_of_seqs 219 out of 1320
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n90_A P15, thylakoid lumenal 99.5 3.8E-14 1.3E-18 108.7 5.9 75 96-170 15-90 (152)
2 2o6w_A Repeat five residue (RF 99.4 9.4E-14 3.2E-18 106.7 5.1 39 123-161 88-126 (150)
3 3n90_A P15, thylakoid lumenal 99.4 4.7E-14 1.6E-18 108.2 3.3 61 111-171 51-112 (152)
4 2f3l_A RFR-domain; beta helix, 99.4 1.5E-13 5.3E-18 109.0 4.4 9 116-124 77-85 (184)
5 2f3l_A RFR-domain; beta helix, 99.4 1.8E-13 6E-18 108.7 3.9 45 103-147 53-98 (184)
6 2xt2_A ALBG, MCBG-like protein 99.3 1.8E-12 6.1E-17 101.7 5.4 62 109-170 108-169 (200)
7 2xt2_A ALBG, MCBG-like protein 99.3 1.5E-12 5.2E-17 102.1 4.5 73 99-171 107-180 (200)
8 2xty_A QNRB1; cell cycle, pent 99.3 2E-12 6.7E-17 103.5 4.8 35 111-145 132-166 (217)
9 2qyu_A Secreted effector prote 99.2 1.6E-11 5.4E-16 113.2 4.3 54 117-170 82-137 (627)
10 2qyu_A Secreted effector prote 99.1 1.7E-11 5.9E-16 112.9 4.2 13 102-114 40-53 (627)
No 1
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.47 E-value=3.8e-14 Score=108.74 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=33.8
Q ss_pred hhhhhcCCccCCC-CCceeccCcccceeeccceecCceecccccccccccCcccccceecCccccCceecCCcCCC
Q 030722 96 KYEAETRGEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTLIAT 170 (172)
Q Consensus 96 ~~~~~~~~~~~~~-~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdLs~ 170 (172)
.......++.+.. .+++|.+++|.+++|.+++|.+++|.+|+|++++|++|+|++++|.+|+|.+++|++|+|++
T Consensus 15 ~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~ 90 (152)
T 3n90_A 15 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEG 90 (152)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCC
Confidence 3333334444444 44444444444444444444444444444444444444444444444444444444444443
No 2
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.43 E-value=9.4e-14 Score=106.68 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=14.1
Q ss_pred eccceecCceecccccccccccCcccccceecCccccCc
Q 030722 123 HVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKA 161 (172)
Q Consensus 123 F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a 161 (172)
|.+++|++++|.+|+|++++|++|+|++++|++++|.++
T Consensus 88 l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a 126 (150)
T 2o6w_A 88 LSETDLENAILIGANLQGANLENANLQGANLENANLRGA 126 (150)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred ecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence 333333333333333333333333333333333333333
No 3
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.43 E-value=4.7e-14 Score=108.23 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=24.3
Q ss_pred ceeccCcccceeeccceecCceecccccccccccCcccccceecC-ccccCceecCCcCCCC
Q 030722 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-AVAYKANFTGTLIATE 171 (172)
Q Consensus 111 ~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~-a~l~~a~f~gAdLs~A 171 (172)
++|.+++|.+++|.+++|++++|.+|+|++++|.+|+|++++|.+ ++|.+++|++|+|+++
T Consensus 51 a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~~a~~~~a 112 (152)
T 3n90_A 51 ASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDV 112 (152)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCTTCBCTTC
T ss_pred CCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEecCCEecCC
Confidence 333333333333333333333333333344444444444444432 3444444444444443
No 4
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.39 E-value=1.5e-13 Score=109.03 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=3.2
Q ss_pred Ccccceeec
Q 030722 116 ADLRKAVHV 124 (172)
Q Consensus 116 ~dL~~a~F~ 124 (172)
++|.+++|+
T Consensus 77 ~~l~~a~f~ 85 (184)
T 2f3l_A 77 ADLTDSNFS 85 (184)
T ss_dssp CBCTTCBCT
T ss_pred CccccCCcC
Confidence 333333333
No 5
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.38 E-value=1.8e-13 Score=108.70 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred CccCCC-CCceeccCcccceeeccceecCceecccccccccccCcc
Q 030722 103 GEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK 147 (172)
Q Consensus 103 ~~~~~~-~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~ 147 (172)
.|.+.. .+++|++++|++++|.+++|++++|++|+|++++|.+|+
T Consensus 53 ~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~ 98 (184)
T 2f3l_A 53 SYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSA 98 (184)
T ss_dssp EEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCB
T ss_pred cccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeec
Confidence 444444 555555555555555555555554444444444444333
No 6
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.30 E-value=1.8e-12 Score=101.73 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=28.9
Q ss_pred CCceeccCcccceeeccceecCceecccccccccccCcccccceecCccccCceecCCcCCC
Q 030722 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTLIAT 170 (172)
Q Consensus 109 ~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdLs~ 170 (172)
.+++|.+++|++++|.+++|++++|.+|+|++++|++|+|.+++|.+++|.+++|++|+|.+
T Consensus 108 ~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~ 169 (200)
T 2xt2_A 108 NDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYH 169 (200)
T ss_dssp TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCC
T ss_pred cccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccc
Confidence 44444444444444444444444444444444444444444444444444444444444433
No 7
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.29 E-value=1.5e-12 Score=102.15 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=50.7
Q ss_pred hhcCCccCCC-CCceeccCcccceeeccceecCceecccccccccccCcccccceecCccccCceecCCcCCCC
Q 030722 99 AETRGEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTLIATE 171 (172)
Q Consensus 99 ~~~~~~~~~~-~g~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdLs~A 171 (172)
....++.+.. .+++|.+++|.+++|.+++|++++|++|+|++++|.+++|++++|++++|.+++|++++|++|
T Consensus 107 l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga 180 (200)
T 2xt2_A 107 LNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRA 180 (200)
T ss_dssp CTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTC
T ss_pred ccccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCc
Confidence 3444555556 667777777777777777777777777777777777777777777777777777776666665
No 8
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.28 E-value=2e-12 Score=103.48 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=12.6
Q ss_pred ceeccCcccceeeccceecCceecccccccccccC
Q 030722 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSG 145 (172)
Q Consensus 111 ~dF~~~dL~~a~F~~a~L~~anFs~A~L~~a~Fs~ 145 (172)
++|.+++|++++|.+++|++++|++++|++++|.+
T Consensus 132 a~l~~~~l~~~~~~~a~l~~a~l~~a~l~~a~l~~ 166 (217)
T 2xty_A 132 VVLEKCELWENRWIGAQVLGATFSGSDLSGGEFST 166 (217)
T ss_dssp CBCTTCBCCSCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred cccccCcccCCCcCCCeeCcCEECCCccCCCCCCC
Confidence 33333333333333333333333333333333333
No 9
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.15 E-value=1.6e-11 Score=113.16 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=23.2
Q ss_pred cccceeeccceecCceecccccccccccCcccccceecCcccc--CceecCCcCCC
Q 030722 117 DLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY--KANFTGTLIAT 170 (172)
Q Consensus 117 dL~~a~F~~a~L~~anFs~A~L~~a~Fs~a~L~gA~f~~a~l~--~a~f~gAdLs~ 170 (172)
+|++++|.+|+|++|+|++|+|++|+|++|+|++|+|.+|+|. +|+|++|+|++
T Consensus 82 dLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA~L~~~gAnLsgAdL~g 137 (627)
T 2qyu_A 82 DISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKN 137 (627)
T ss_dssp BCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCCTTCCSCCEEEEEECTT
T ss_pred CCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCccccCCCCeeCCCCCCC
Confidence 3333333444444444444444444444444444444444443 34444444444
No 10
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.14 E-value=1.7e-11 Score=112.92 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=5.5
Q ss_pred CCccCCC-CCceec
Q 030722 102 RGEFGIG-SAAQFG 114 (172)
Q Consensus 102 ~~~~~~~-~g~dF~ 114 (172)
++|.+.+ +|++|.
T Consensus 40 rDFsg~DLsgadLs 53 (627)
T 2qyu_A 40 RDFSNADFRNITFS 53 (627)
T ss_dssp TBCTTCBCTTCBGG
T ss_pred CcCCCCCCCCCccc
Confidence 3444444 444333
Done!