Query 030724
Match_columns 172
No_of_seqs 107 out of 834
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 5.3E-31 1.2E-35 225.4 17.1 171 1-171 528-698 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 8E-30 1.7E-34 215.6 17.7 171 1-171 520-691 (937)
3 PRK15101 protease3; Provisiona 99.9 1.1E-25 2.5E-30 198.3 19.3 170 1-171 541-711 (961)
4 TIGR02110 PQQ_syn_pqqF coenzym 99.4 3.9E-11 8.4E-16 102.4 15.8 168 3-171 18-197 (696)
5 COG0612 PqqL Predicted Zn-depe 99.3 8.9E-12 1.9E-16 101.9 10.8 167 4-171 36-210 (438)
6 PRK15101 protease3; Provisiona 99.1 1.7E-09 3.7E-14 96.2 12.2 167 4-171 63-242 (961)
7 PF00675 Peptidase_M16: Insuli 98.9 2.8E-08 6.1E-13 69.6 10.6 125 3-128 9-138 (149)
8 KOG0960 Mitochondrial processi 98.5 1.7E-06 3.6E-11 68.6 10.6 166 4-170 52-225 (467)
9 PTZ00432 falcilysin; Provision 98.3 6.3E-06 1.4E-10 74.6 10.9 162 5-171 114-316 (1119)
10 KOG2067 Mitochondrial processi 97.8 0.00032 7E-09 56.0 10.6 133 30-169 306-445 (472)
11 KOG2583 Ubiquinol cytochrome c 97.6 0.0027 5.9E-08 50.8 12.6 161 3-166 40-208 (429)
12 COG0612 PqqL Predicted Zn-depe 97.6 0.0015 3.2E-08 53.6 11.8 121 49-170 300-433 (438)
13 KOG2067 Mitochondrial processi 97.6 0.00048 1E-08 55.1 8.2 161 5-166 44-212 (472)
14 KOG0960 Mitochondrial processi 97.5 0.005 1.1E-07 49.4 12.8 119 50-169 327-450 (467)
15 COG1025 Ptr Secreted/periplasm 97.2 0.017 3.8E-07 51.0 13.9 147 20-168 748-909 (937)
16 COG1026 Predicted Zn-dependent 97.0 0.011 2.3E-07 52.5 10.8 157 5-171 41-227 (978)
17 PF05193 Peptidase_M16_C: Pept 96.6 0.018 3.8E-07 40.5 8.0 40 62-101 142-184 (184)
18 COG1026 Predicted Zn-dependent 96.4 0.17 3.7E-06 45.3 13.9 161 8-170 550-744 (978)
19 PTZ00432 falcilysin; Provision 96.4 0.09 2E-06 48.4 12.7 161 8-168 681-880 (1119)
20 KOG0959 N-arginine dibasic con 96.3 0.1 2.3E-06 46.8 12.4 162 7-170 50-226 (974)
21 KOG0961 Predicted Zn2+-depende 93.5 0.059 1.3E-06 46.4 2.6 109 61-171 100-222 (1022)
22 PF08367 M16C_assoc: Peptidase 92.5 0.35 7.5E-06 36.8 5.4 112 7-120 92-221 (248)
23 KOG0961 Predicted Zn2+-depende 87.8 2.7 5.9E-05 36.8 7.2 108 62-170 636-758 (1022)
24 KOG2019 Metalloendoprotease HM 83.2 33 0.00071 30.5 11.7 156 11-167 317-495 (998)
25 KOG2583 Ubiquinol cytochrome c 80.9 30 0.00064 28.4 14.1 109 55-170 310-422 (429)
26 KOG2019 Metalloendoprotease HM 79.9 2.5 5.3E-05 37.1 3.7 57 113-169 202-261 (998)
27 PRK14420 acylphosphatase; Prov 70.2 9.8 0.00021 24.1 3.9 39 45-83 24-63 (91)
28 PRK14425 acylphosphatase; Prov 68.3 9.9 0.00022 24.4 3.6 39 44-82 27-66 (94)
29 PRK14429 acylphosphatase; Prov 67.5 12 0.00026 23.7 3.9 39 44-82 23-62 (90)
30 PRK14430 acylphosphatase; Prov 67.4 10 0.00022 24.2 3.6 37 44-80 25-62 (92)
31 PRK14431 acylphosphatase; Prov 65.7 12 0.00026 23.7 3.6 38 45-82 24-61 (89)
32 PRK14440 acylphosphatase; Prov 65.0 12 0.00027 23.7 3.6 37 45-81 25-62 (90)
33 PRK14444 acylphosphatase; Prov 63.7 13 0.00029 23.6 3.6 38 44-81 25-63 (92)
34 PRK14435 acylphosphatase; Prov 63.5 14 0.00031 23.4 3.7 37 45-81 24-61 (90)
35 PRK14449 acylphosphatase; Prov 63.4 15 0.00033 23.2 3.8 39 45-83 25-64 (90)
36 PRK14451 acylphosphatase; Prov 63.1 14 0.00031 23.3 3.6 38 44-81 24-62 (89)
37 PRK14445 acylphosphatase; Prov 62.0 16 0.00035 23.2 3.7 38 44-81 25-63 (91)
38 PF00531 Death: Death domain; 60.7 21 0.00046 21.5 4.1 42 113-154 39-82 (83)
39 PRK14836 undecaprenyl pyrophos 60.6 69 0.0015 24.6 7.5 86 25-126 80-179 (253)
40 PRK14436 acylphosphatase; Prov 60.5 17 0.00036 23.2 3.6 37 45-81 26-63 (91)
41 PRK14428 acylphosphatase; Prov 60.2 17 0.00036 23.5 3.6 37 45-81 30-67 (97)
42 PRK14447 acylphosphatase; Prov 59.8 18 0.0004 23.2 3.7 37 45-81 26-64 (95)
43 PRK14448 acylphosphatase; Prov 59.0 19 0.00041 22.8 3.6 37 45-81 24-61 (90)
44 PF00708 Acylphosphatase: Acyl 58.9 21 0.00046 22.4 3.9 38 45-82 26-64 (91)
45 PRK14427 acylphosphatase; Prov 58.9 21 0.00046 22.8 3.9 39 45-83 28-67 (94)
46 PRK14446 acylphosphatase; Prov 58.9 19 0.00041 22.8 3.6 38 44-81 23-61 (88)
47 PRK14424 acylphosphatase; Prov 58.6 19 0.00041 23.1 3.6 37 45-81 29-66 (94)
48 PF09851 SHOCT: Short C-termin 58.5 22 0.00048 17.6 3.6 24 79-102 7-30 (31)
49 PRK14438 acylphosphatase; Prov 58.3 20 0.00043 22.8 3.7 37 45-81 25-62 (91)
50 PF09568 RE_MjaI: MjaI restric 58.2 11 0.00024 27.0 2.7 53 99-155 31-83 (170)
51 PRK14422 acylphosphatase; Prov 58.0 21 0.00046 22.8 3.8 38 45-82 28-66 (93)
52 PTZ00179 60S ribosomal protein 57.6 46 0.001 24.3 5.9 54 19-72 59-119 (189)
53 PRK14423 acylphosphatase; Prov 57.4 21 0.00046 22.7 3.7 37 45-81 27-64 (92)
54 PRK14426 acylphosphatase; Prov 57.0 22 0.00047 22.6 3.7 39 44-82 25-64 (92)
55 PRK14442 acylphosphatase; Prov 55.7 22 0.00049 22.5 3.6 38 44-81 25-63 (91)
56 PRK05518 rpl6p 50S ribosomal p 55.2 73 0.0016 23.1 6.5 54 19-72 58-118 (180)
57 TIGR03653 arch_L6P archaeal ri 54.7 76 0.0017 22.8 6.5 53 20-72 53-112 (170)
58 PRK14421 acylphosphatase; Prov 54.4 23 0.00051 23.0 3.5 37 45-81 26-63 (99)
59 PRK14433 acylphosphatase; Prov 53.7 27 0.00058 22.0 3.6 37 45-81 23-60 (87)
60 PRK14441 acylphosphatase; Prov 53.6 27 0.00059 22.3 3.7 38 44-81 26-64 (93)
61 PRK14443 acylphosphatase; Prov 53.0 26 0.00056 22.4 3.5 38 45-82 26-64 (93)
62 PRK14452 acylphosphatase; Prov 52.7 25 0.00055 23.2 3.5 37 44-80 41-78 (107)
63 PRK14450 acylphosphatase; Prov 51.4 30 0.00065 21.9 3.6 37 45-81 24-62 (91)
64 CHL00140 rpl6 ribosomal protei 50.9 92 0.002 22.5 7.0 51 20-71 57-111 (178)
65 PRK14437 acylphosphatase; Prov 50.8 30 0.00065 22.9 3.6 37 45-81 45-82 (109)
66 TIGR03654 L6_bact ribosomal pr 50.3 93 0.002 22.4 6.8 52 20-72 56-111 (175)
67 PRK14434 acylphosphatase; Prov 49.5 38 0.00083 21.5 3.9 38 45-82 24-64 (92)
68 cd08323 CARD_APAF1 Caspase act 47.8 69 0.0015 20.2 5.2 65 77-151 16-81 (86)
69 PRK14432 acylphosphatase; Prov 47.6 40 0.00087 21.5 3.8 38 45-82 24-63 (93)
70 PRK14830 undecaprenyl pyrophos 45.6 1.4E+02 0.003 23.0 9.1 109 2-127 65-188 (251)
71 PRK14439 acylphosphatase; Prov 45.5 38 0.00082 24.2 3.7 39 44-82 96-135 (163)
72 cd08803 Death_ank3 Death domai 45.1 35 0.00076 21.4 3.2 56 87-150 25-82 (84)
73 PRK14834 undecaprenyl pyrophos 44.6 1.4E+02 0.0031 22.9 8.8 86 25-126 80-179 (249)
74 PRK05498 rplF 50S ribosomal pr 43.3 1.2E+02 0.0027 21.8 6.8 52 20-72 57-112 (178)
75 PF00427 PBS_linker_poly: Phyc 43.2 73 0.0016 21.9 4.7 76 81-157 37-114 (131)
76 PF07521 RMMBL: RNA-metabolisi 42.5 34 0.00074 18.3 2.5 25 141-167 17-41 (43)
77 cd08317 Death_ank Death domain 41.6 46 0.00099 20.6 3.3 38 113-150 43-82 (84)
78 PRK14840 undecaprenyl pyrophos 39.7 1.7E+02 0.0038 22.4 8.0 86 25-126 88-187 (250)
79 PF01729 QRPTase_C: Quinolinat 39.3 42 0.00092 24.0 3.2 33 139-171 106-139 (169)
80 PRK10240 undecaprenyl pyrophos 39.2 1.7E+02 0.0037 22.1 8.4 86 25-126 59-158 (229)
81 PF10369 ALS_ss_C: Small subun 37.7 39 0.00084 20.6 2.5 26 55-80 31-56 (75)
82 TIGR00055 uppS undecaprenyl di 36.7 1.9E+02 0.004 21.9 8.0 87 25-127 65-165 (226)
83 PRK00810 nifW nitrogenase stab 35.7 93 0.002 20.8 4.2 42 75-116 40-85 (113)
84 PF08503 DapH_N: Tetrahydrodip 34.6 49 0.0011 20.8 2.6 28 143-170 2-29 (83)
85 PRK14832 undecaprenyl pyrophos 33.2 2.3E+02 0.0049 21.9 8.5 86 25-126 84-183 (253)
86 PF10193 Telomere_reg-2: Telom 32.6 47 0.001 22.1 2.4 68 70-141 40-109 (114)
87 PF10557 Cullin_Nedd8: Cullin 31.2 1.2E+02 0.0025 17.9 4.1 32 73-104 25-57 (68)
88 PF04444 Dioxygenase_N: Catech 30.3 1.3E+02 0.0029 18.3 4.0 34 73-106 8-41 (74)
89 KOG4107 MP1 adaptor interactin 29.5 1.7E+02 0.0037 19.2 4.6 47 38-84 6-52 (125)
90 PRK14829 undecaprenyl pyrophos 29.1 2.6E+02 0.0057 21.3 8.5 67 59-126 99-179 (243)
91 cd08805 Death_ank1 Death domai 29.0 1.4E+02 0.003 18.7 4.0 58 86-151 24-83 (84)
92 KOG0368 Acetyl-CoA carboxylase 28.5 1.7E+02 0.0038 28.8 5.9 67 65-131 797-878 (2196)
93 cd08318 Death_NMPP84 Death dom 28.5 1.5E+02 0.0033 18.4 5.3 37 113-149 45-83 (86)
94 PF14659 Phage_int_SAM_3: Phag 28.0 42 0.0009 18.5 1.4 18 137-154 40-57 (58)
95 PRK14102 nifW nitrogenase stab 27.9 1.8E+02 0.004 19.1 4.7 41 76-116 37-83 (105)
96 COG1254 AcyP Acylphosphatases 27.7 1.2E+02 0.0026 19.3 3.6 39 45-83 26-65 (92)
97 PTZ00027 60S ribosomal protein 27.0 2.5E+02 0.0055 20.5 6.3 54 19-72 60-122 (190)
98 PF09840 DUF2067: Uncharacteri 27.0 1.6E+02 0.0034 21.6 4.5 37 50-86 24-60 (190)
99 PF11693 DUF2990: Protein of u 26.8 61 0.0013 19.1 1.9 22 65-86 17-38 (64)
100 KOG3460 Small nuclear ribonucl 25.3 29 0.00063 21.6 0.4 46 61-106 27-72 (91)
101 PF08671 SinI: Anti-repressor 24.1 77 0.0017 15.7 1.7 14 140-153 15-28 (30)
102 PF01136 Peptidase_U32: Peptid 23.3 94 0.002 23.0 2.9 29 140-169 68-96 (233)
103 KOG0088 GTPase Rab21, small G 22.4 1.1E+02 0.0023 22.1 2.8 28 141-168 98-127 (218)
104 cd02395 SF1_like-KH Splicing f 22.2 2.5E+02 0.0055 18.8 5.5 43 62-106 68-113 (120)
105 CHL00100 ilvH acetohydroxyacid 21.6 1.1E+02 0.0024 22.0 2.9 27 55-81 113-139 (174)
106 PF07443 HARP: HepA-related pr 21.2 94 0.002 17.9 1.9 37 63-100 2-43 (55)
107 PF10309 DUF2414: Protein of u 21.1 1.6E+02 0.0035 17.3 3.0 26 138-163 12-40 (62)
108 COG0440 IlvH Acetolactate synt 20.7 1.1E+02 0.0025 21.8 2.7 26 55-80 115-140 (163)
109 COG3462 Predicted membrane pro 20.7 1.7E+02 0.0036 19.5 3.2 28 75-102 89-116 (117)
110 TIGR02110 PQQ_syn_pqqF coenzym 20.6 3.4E+02 0.0073 24.3 6.1 58 31-88 469-526 (696)
111 COG4997 Uncharacterized conser 20.4 2.4E+02 0.0052 17.8 3.9 35 70-104 54-88 (95)
112 PF03206 NifW: Nitrogen fixati 20.1 2.7E+02 0.0058 18.3 4.2 41 76-116 37-82 (105)
113 TIGR00119 acolac_sm acetolacta 20.1 1.3E+02 0.0027 21.3 2.8 26 56-81 113-138 (157)
114 cd00475 CIS_IPPS Cis (Z)-Isopr 20.1 3.9E+02 0.0084 20.1 7.8 87 25-127 66-166 (221)
115 COG0855 Ppk Polyphosphate kina 20.1 44 0.00095 29.3 0.6 42 33-74 543-585 (696)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-31 Score=225.39 Aligned_cols=171 Identities=41% Similarity=0.694 Sum_probs=167.5
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 1 ~F~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
+|++||+.+.+.+.+|.+..+|.+++++.+|..++++.++|..|+|..||++++++.+..|+.++|.||++|++.+++.+
T Consensus 528 ~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~ 607 (974)
T KOG0959|consen 528 KFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKV 607 (974)
T ss_pred ccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchhe
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (172)
++.+.++.+++++|+.+|+.+.++|+|...++|+.+|.+++..++.+..|+.++++++++.+|++|+..|...++++.++
T Consensus 608 ~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~ 687 (974)
T KOG0959|consen 608 VQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL 687 (974)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCC
Q 030724 161 ECYIAGPSVSI 171 (172)
Q Consensus 161 ~~lv~GN~~~~ 171 (172)
+++|+||++++
T Consensus 688 e~~i~GN~te~ 698 (974)
T KOG0959|consen 688 ELLIHGNLTEK 698 (974)
T ss_pred EEEEecCcchH
Confidence 99999999864
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-30 Score=215.60 Aligned_cols=171 Identities=29% Similarity=0.496 Sum_probs=167.3
Q ss_pred CCCC-ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHH
Q 030724 1 MFST-PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (172)
Q Consensus 1 ~F~~-Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~ 79 (172)
.|.+ ||+.+.+.|++|.+..||++.|+.+|++.++++.+.+..|+|..||+++++.++.+|+.|+++||+++++.++..
T Consensus 520 ~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~ 599 (937)
T COG1025 520 YFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRA 599 (937)
T ss_pred ccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHH
Confidence 3777 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchh
Q 030724 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (172)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~ 159 (172)
+++.+...++++++|..+|+++.++|+|.....|++++.+.+..++.+++|+.+|++++|+.++++++.+|+..++++.+
T Consensus 600 ~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~ 679 (937)
T COG1025 600 FLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVH 679 (937)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCC
Q 030724 160 LECYIAGPSVSI 171 (172)
Q Consensus 160 ~~~lv~GN~~~~ 171 (172)
++.+|+||++.+
T Consensus 680 lE~lv~Gn~~~~ 691 (937)
T COG1025 680 LEMLVLGNLTEA 691 (937)
T ss_pred eeeeeeccchHH
Confidence 999999999864
No 3
>PRK15101 protease3; Provisional
Probab=99.94 E-value=1.1e-25 Score=198.27 Aligned_cols=170 Identities=20% Similarity=0.316 Sum_probs=161.0
Q ss_pred CC-CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHH
Q 030724 1 MF-STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (172)
Q Consensus 1 ~F-~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~ 79 (172)
.| ++||+.+.+.|.+|...+++++.+++.|++.++++.+++..|.|..||++++++ +.+|+.++++||+++++.++..
T Consensus 541 ~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~ 619 (961)
T PRK15101 541 YFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQA 619 (961)
T ss_pred ccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHH
Confidence 37 599999999999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred HHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchh
Q 030724 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (172)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~ 159 (172)
+++.+.++.+++++|++.|+.++++++|.....|+.++...+..+..+++|++.+..++|+++|++|+.+|+++++++.+
T Consensus 620 l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~ 699 (961)
T PRK15101 620 LLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGAT 699 (961)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhce
Confidence 99999999999999999999999999999888899999988777677777878889999999999999999999999999
Q ss_pred eeEEeecCCCCC
Q 030724 160 LECYIAGPSVSI 171 (172)
Q Consensus 160 ~~~lv~GN~~~~ 171 (172)
++++|+||++++
T Consensus 700 ~~~~v~GNi~~~ 711 (961)
T PRK15101 700 PEFLVVGNLTEE 711 (961)
T ss_pred EEEEEEcCCCHH
Confidence 999999999864
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.36 E-value=3.9e-11 Score=102.40 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=140.1
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhccchhcceEEEeeeCCeeEEEEeecCccHHHH
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e------~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~l 76 (172)
..|.+.+.+.+..++..+.+...+++.++..++-..... +.-..+..|-+++.+.+.+...+.+...+++++..
T Consensus 18 ~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~a 97 (696)
T TIGR02110 18 DAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAG 97 (696)
T ss_pred CCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHH
Confidence 368899999999999888888899999999999665422 33333456888888888889999999999999999
Q ss_pred HHHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC-----HHHHHhhCCCCCHHHHHHH
Q 030724 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP-----WMEELEVLPHLEAEDLAKF 150 (172)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~-----~~~~l~~L~~it~ed~~~f 150 (172)
++.+.+.+.++.+++++|++-|+.++.+++....+ |...+...+...++.+ +|. ..+-++.+..++.+|+++|
T Consensus 98 L~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~dd-p~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~~t~edL~~F 176 (696)
T TIGR02110 98 LARLCDMLARPLLTAEDQQREREVLEAEYIAWQND-ADTLREAALLDALQAGHPLRRFHAGSRDSLALPNTAFQQALRDF 176 (696)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcccchHHHHHHH
Confidence 99999999999999999999999999999987655 8888998888877743 344 2344444445669999999
Q ss_pred HHHHhcchheeEEeecCCCCC
Q 030724 151 VPMMLSRTFLECYIAGPSVSI 171 (172)
Q Consensus 151 ~~~~~~~~~~~~lv~GN~~~~ 171 (172)
+++++.+.++.+.|+||++.+
T Consensus 177 ~~~~Y~p~NmvLvIvGdvs~e 197 (696)
T TIGR02110 177 HRRHYQAGNMQLWLQGPQSLD 197 (696)
T ss_pred HHHhcchhcEEEEEEeCCCHH
Confidence 999999999999999999754
No 5
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.34 E-value=8.9e-12 Score=101.86 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=141.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
+|.+.+.+.+..+....++...+++.++..++-+... +....-+..|-..+...+..-....++-.+++++..++
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~ 115 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALD 115 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHH
Confidence 6889999999988888899999999999999866532 45555566677777666655555555557899999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
.+.+.+.++.+++++|++-|..++.+++-...+ |...+...+...++++ ++. +....+.++.+|.+|+++|+++|+
T Consensus 116 llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~~dl~~f~~k~Y 194 (438)
T COG0612 116 LLADILLNPTFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194 (438)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999988 9999999988888864 333 445678999999999999999999
Q ss_pred cchheeEEeecCCCCC
Q 030724 156 SRTFLECYIAGPSVSI 171 (172)
Q Consensus 156 ~~~~~~~lv~GN~~~~ 171 (172)
.+.++.++|+||++.+
T Consensus 195 ~p~n~~l~vvGdi~~~ 210 (438)
T COG0612 195 QPDNMVLVVVGDVDAE 210 (438)
T ss_pred CcCceEEEEecCCCHH
Confidence 9999999999999753
No 6
>PRK15101 protease3; Provisional
Probab=99.07 E-value=1.7e-09 Score=96.23 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=135.4
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~------e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll 77 (172)
.|++.+.+.+..+...+.+...+++.++..++-.... +.....+..|-+.+...+.+...+.+...++.++..+
T Consensus 63 ~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL 142 (961)
T PRK15101 63 AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAV 142 (961)
T ss_pred CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHH
Confidence 5889999999999888877789999999998855442 2222334457777777777888888999999999999
Q ss_pred HHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCC----CHHHHHHH
Q 030724 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHL----EAEDLAKF 150 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~i----t~ed~~~f 150 (172)
..+.+.+.++.++++++++-|..+..+++....+ |...+...+...++++ +|+ ...-.+.|+.+ +.+++++|
T Consensus 143 ~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~~~~~~~L~~f 221 (961)
T PRK15101 143 DRLADAIAEPLLDPKNADRERNAVNAELTMARSR-DGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSKLQDALVDF 221 (961)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCchHHHHHHHHH
Confidence 9999999999999999999999999999877665 7777777777777643 344 22345666665 79999999
Q ss_pred HHHHhcchheeEEeecCCCCC
Q 030724 151 VPMMLSRTFLECYIAGPSVSI 171 (172)
Q Consensus 151 ~~~~~~~~~~~~lv~GN~~~~ 171 (172)
+++++++.++.+.|+||++.+
T Consensus 222 ~~~~Y~p~nm~lvv~G~~~~~ 242 (961)
T PRK15101 222 YQRYYSANLMKAVIYSNQPLP 242 (961)
T ss_pred HHHhCcccceEEEEEcCCCHH
Confidence 999999999999999999853
No 7
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.90 E-value=2.8e-08 Score=69.56 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=107.8
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHH
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l-----~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll 77 (172)
..|.+.+.+.+..+...+++...+++.++..++...- .+..-.....|.+++...+.+.+.+.+++.+++++.++
T Consensus 9 ~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l 88 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLEKAL 88 (149)
T ss_dssp TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHH
T ss_pred CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccchhHH
Confidence 4699999999999999999999999999988876542 23333445568899999999999999999999999999
Q ss_pred HHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC
Q 030724 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 128 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~ 128 (172)
+.+.+.+.+|.+++++|++.|..++.+++....+ |...+...+...++.+
T Consensus 89 ~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~-~~~~~~~~l~~~~f~~ 138 (149)
T PF00675_consen 89 ELLADMLFNPSFDEEEFEREREQILQEIEEIKEN-PQELAFEKLHSAAFRG 138 (149)
T ss_dssp HHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998766 8899999888888764
No 8
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.7e-06 Score=68.57 Aligned_cols=166 Identities=7% Similarity=0.046 Sum_probs=135.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccch-----hcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV-----AGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~-----agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
.+.+.+-+.|.+++..+++++.+.+.++..+.-.....-...|.. -|.-.+...+...-...+..++.++|..++
T Consensus 52 a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavd 131 (467)
T KOG0960|consen 52 ASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVD 131 (467)
T ss_pred CcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHH
Confidence 477889999999999999999999999998765544333322222 244555555566788899999999999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC---CCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
.+.+.+.|..+.++.+++-|.-++|+.+..... -..+..+++...-+.+ ..+...-.+-+++|+.+|+.+|++..+
T Consensus 132 iLaDIlqns~L~~s~IerER~vILrEmqevd~~-~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY 210 (467)
T KOG0960|consen 132 ILADILQNSKLEESAIERERDVILREMQEVDKN-HQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHY 210 (467)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999987776 4477788887777755 244556678899999999999999999
Q ss_pred cchheeEEeecCCCC
Q 030724 156 SRTFLECYIAGPSVS 170 (172)
Q Consensus 156 ~~~~~~~lv~GN~~~ 170 (172)
.+.++.....|+++-
T Consensus 211 ~~~RmVlaaaGgV~H 225 (467)
T KOG0960|consen 211 KASRMVLAAAGGVKH 225 (467)
T ss_pred cCccEEEEecCCcCH
Confidence 999999999999874
No 9
>PTZ00432 falcilysin; Provisional
Probab=98.31 E-value=6.3e-06 Score=74.62 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=116.3
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhccchhcce--EEEeeeCCeeEEEEeecCc-cHHHH
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLD--YGINHTESGFEVTVVGYNH-KLRIL 76 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e-----~~y~a~~agl~--~~~~~~~~gl~i~i~G~s~-k~~~l 76 (172)
|-..+.+.+.+|.... .+++.++..++-..... .....+.-|++ .+...+.+...+.+...++ .+..+
T Consensus 114 ~~~~f~i~f~T~~~d~----~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ 189 (1119)
T PTZ00432 114 KEMCFDFYVPTPPHND----KGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNT 189 (1119)
T ss_pred ceeEEEEEecCCCCCC----cchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHH
Confidence 4567778888886433 46777777777544322 22222223433 3444455677888888887 49999
Q ss_pred HHHHHHHhhcCCcChhhH--HH---------H--------------------HHHHHHHhhhcccCChHHHHHHHHHHhc
Q 030724 77 LETIFQKIAQFKVKPDRF--SV---------I--------------------KEMVTKEYHNNKFLQPFQLAMYYCSLIL 125 (172)
Q Consensus 77 l~~i~~~l~~~~~~~~~F--~~---------~--------------------k~~~~~~~~n~~~~~p~~~a~~~~~~~l 125 (172)
+...++.+.+|.++++++ .+ . |.-+..+++....+ |...+.+.+...+
T Consensus 190 ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~-p~~~~~~~~~~~l 268 (1119)
T PTZ00432 190 ADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSD-PLSFGYSVIYQNL 268 (1119)
T ss_pred HHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCC-HHHHHHHHHHHHH
Confidence 999999999999987753 32 1 33466777766665 9898888876666
Q ss_pred cCCCCC--HHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCCCC
Q 030724 126 QDQTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSI 171 (172)
Q Consensus 126 ~~~~~~--~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~~ 171 (172)
+.++|. .....+.|..+|++++++|+++++.+.++..+|+||++.+
T Consensus 269 f~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~ 316 (1119)
T PTZ00432 269 FSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVT 316 (1119)
T ss_pred hCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHH
Confidence 655554 3456788999999999999999999999999999999853
No 10
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00032 Score=56.00 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=99.6
Q ss_pred HHHHHHHHhhhhh--hhccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHHHhhcCC--cChhhHHHHHHHHHHH
Q 030724 30 IFTRLLLDYLNEY--AYYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQKIAQFK--VKPDRFSVIKEMVTKE 104 (172)
Q Consensus 30 l~~~ll~~~l~e~--~y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~~l~~~~--~~~~~F~~~k~~~~~~ 104 (172)
||..+..+.||+. .|.+ ..|+-+.++.| +.|..+..-+..+..++.+.+.|.+.. +++++.+|+|.++...
T Consensus 306 MySrLY~~vLNry~wv~sc----tAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~ 381 (472)
T KOG2067|consen 306 MYSRLYLNVLNRYHWVYSC----TAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSM 381 (472)
T ss_pred hHHHHHHHHHhhhHHHHHh----hhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4445555555553 3333 34555556777 488888899999999999999998865 8999999999999988
Q ss_pred -hhhcccCChHHHHHHHHHHhccCC-CCCHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 105 -YHNNKFLQPFQLAMYYCSLILQDQ-TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 105 -~~n~~~~~p~~~a~~~~~~~l~~~-~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
+-|.... | ..+.++-++++..+ .-.+++.++.++++|.+|+.++-.+++.+ ...+-..||++
T Consensus 382 LlMNLESR-~-V~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~ 445 (472)
T KOG2067|consen 382 LLMNLESR-P-VAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGT 445 (472)
T ss_pred HHhccccc-c-hhHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCccc
Confidence 5666665 6 34566666666654 67789999999999999999999999854 34455567764
No 11
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=97.60 E-value=0.0027 Score=50.78 Aligned_cols=161 Identities=10% Similarity=0.039 Sum_probs=120.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhccchhcceEEEeeeCCeeEEEEeecCccHHHHH
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll 77 (172)
+.|..++.+.|+.+.-+.+..++.+..+...-.....++ +.+..+..|-.++...+..-+.+++.-..|..+..+
T Consensus 40 ~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l 119 (429)
T KOG2583|consen 40 PTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYL 119 (429)
T ss_pred CCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHH
Confidence 468889999999999998888888888887776655544 456667778888888888899999999999999999
Q ss_pred HHHHHHhhcCCcChhhHHHHH-HHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHH--HhhCCCCCHHHHHHHHHHH
Q 030724 78 ETIFQKIAQFKVKPDRFSVIK-EMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE--LEVLPHLEAEDLAKFVPMM 154 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k-~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~--l~~L~~it~ed~~~f~~~~ 154 (172)
..+.+.+.++.|.+=+.+... .++.. ... .+.|+.++.+.+...-+++.....-. .-.+..++.+|+..|.++.
T Consensus 120 ~~L~~V~~~paFkPwEl~D~~~~ti~~--~l~-~~t~~~~a~e~lH~aAfRngLgnslY~p~~~vg~vss~eL~~Fa~k~ 196 (429)
T KOG2583|consen 120 SLLGDVLDAPAFKPWELEDVVLATIDA--DLA-YQTPYTIAIEQLHAAAFRNGLGNSLYSPGYQVGSVSSSELKDFAAKH 196 (429)
T ss_pred HHHHHhhcccCcCchhhhhhhhhhhHH--Hhh-hcChHHHHHHHHHHHHHhcccCCcccCCcccccCccHHHHHHHHHHH
Confidence 999999999888776666555 22222 222 34599999998877666542221111 1257899999999999998
Q ss_pred hcchheeEEeec
Q 030724 155 LSRTFLECYIAG 166 (172)
Q Consensus 155 ~~~~~~~~lv~G 166 (172)
|-..+...+-.|
T Consensus 197 fv~gn~~lvg~n 208 (429)
T KOG2583|consen 197 FVKGNAVLVGVN 208 (429)
T ss_pred hhccceEEEecC
Confidence 876666655443
No 12
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=97.59 E-value=0.0015 Score=53.62 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=91.4
Q ss_pred hcceEEEee-----eCCee-EEEEeec---CccHHHHHHHHHHHhhcCC---cChhhHHHHHHHHHHHhhhcccCChHHH
Q 030724 49 AGLDYGINH-----TESGF-EVTVVGY---NHKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQPFQL 116 (172)
Q Consensus 49 agl~~~~~~-----~~~gl-~i~i~G~---s~k~~~ll~~i~~~l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p~~~ 116 (172)
.|+.|+++. ...|. .+.+..- .++....+..+++.+.... +++++.+..|..+...+-..... |...
T Consensus 300 ~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s-~~~~ 378 (438)
T COG0612 300 RGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS-PSSI 378 (438)
T ss_pred cCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCC-HHHH
Confidence 466665552 12243 3333333 3567777777777776664 88999999999988888777766 8888
Q ss_pred HHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 117 AMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 117 a~~~~~~~l~-~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
+..+...... ...-+..+..+.++++|.+|++++.++++........+.|+...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~~ 433 (438)
T COG0612 379 AELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEKA 433 (438)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEccccc
Confidence 8888877776 45677889999999999999999999999988888888887543
No 13
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00048 Score=55.06 Aligned_cols=161 Identities=11% Similarity=0.043 Sum_probs=125.7
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHH
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l-----~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~ 79 (172)
|-+.+-+.|.++..+..+.-...+.++.++.=.+. .++.-..+..|-.++.+.+...+...++.+++.++.+++.
T Consensus 44 ~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~l 123 (472)
T KOG2067|consen 44 QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVEL 123 (472)
T ss_pred CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHH
Confidence 34677788899888888777777887777664332 2444455666778888888888999999999999999999
Q ss_pred HHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCCHHHH--HhhCCCCCHHHHHHHHHHHhc
Q 030724 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWPWMEE--LEVLPHLEAEDLAKFVPMMLS 156 (172)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~~~~~--l~~L~~it~ed~~~f~~~~~~ 156 (172)
+++.+.+|.+++++.+..|..+.-++...... |.....+.+...-+.+ .....-. .+.+.+|+.+.+.+|.+.++.
T Consensus 124 LadtV~~P~~~d~ev~~~~~~v~~E~~el~~~-Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~yt 202 (472)
T KOG2067|consen 124 LADTVLNPKFTDQEVEEARRAVKYEIEELWMR-PEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYT 202 (472)
T ss_pred HHHHHhcccccHHHHHHHHHhhhheccccccC-chhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCC
Confidence 99999999999999999999998888888887 8777777766655544 1111111 357789999999999999999
Q ss_pred chheeEEeec
Q 030724 157 RTFLECYIAG 166 (172)
Q Consensus 157 ~~~~~~lv~G 166 (172)
+.++..--+|
T Consensus 203 p~rmVlA~vG 212 (472)
T KOG2067|consen 203 PERMVLAGVG 212 (472)
T ss_pred hhheEeeecC
Confidence 9888877666
No 14
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.005 Score=49.36 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=94.3
Q ss_pred cceEEEeeeCCee-EEEEee-cCccHHHHHHHHHHHhhcCC--cChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhc
Q 030724 50 GLDYGINHTESGF-EVTVVG-YNHKLRILLETIFQKIAQFK--VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL 125 (172)
Q Consensus 50 gl~~~~~~~~~gl-~i~i~G-~s~k~~~ll~~i~~~l~~~~--~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l 125 (172)
-.+++++..+.|+ .+.+-. -...++.++..++....... +++.+-+++|.++...+--.... .-..|.++-.++|
T Consensus 327 fqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldg-ttpi~ediGrqlL 405 (467)
T KOG0960|consen 327 FQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDG-TTPIAEDIGRQLL 405 (467)
T ss_pred HhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHh
Confidence 3577888878875 566665 56688999999988887764 89999999999999885544432 2234888888888
Q ss_pred cCC-CCCHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 126 QDQ-TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 126 ~~~-~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
+.+ ..++.|.-+.++++|..+++++..+++-.-.+-+..+|.+.
T Consensus 406 ~~Grri~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 406 TYGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred hcCCcCChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 865 68889999999999999999999998866677788888864
No 15
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.017 Score=51.04 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEE---eee-CCeeEEEEeecCccHHHHHHHHHHHhhc-----CCcC
Q 030724 20 SSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGI---NHT-ESGFEVTVVGYNHKLRILLETIFQKIAQ-----FKVK 90 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~---~~~-~~gl~i~i~G~s~k~~~ll~~i~~~l~~-----~~~~ 90 (172)
++.++.+++.|+..+++..+-..+---+..|+-.-- ..+ .-|+.+.|..-+..=..+++.+-..+-. .+.+
T Consensus 748 ~~~~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~~ms 827 (937)
T COG1025 748 DEIKSSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELREMS 827 (937)
T ss_pred chHHHHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHHhCC
Confidence 368888888888888887665544444444542221 222 3377777775443322333333222222 1368
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCC--CC-HHHHHhhCCCCCHHHHHHHHHHHhc---chheeEEe
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT--WP-WMEELEVLPHLEAEDLAKFVPMMLS---RTFLECYI 164 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~--~~-~~~~l~~L~~it~ed~~~f~~~~~~---~~~~~~lv 164 (172)
+++|+..|+.++.++.-.... +-..|..+. ..+..+. ++ ++.++++++.+|.+++.+|....+. +..+.+.|
T Consensus 828 ~e~Fe~~k~alin~il~~~~n-l~e~a~r~~-~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~~g~~l~~~i 905 (937)
T COG1025 828 EEDFEQIKKALINQILQPPQN-LAEEASRLW-KAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYEQGSKLLSHI 905 (937)
T ss_pred HHHHHHHHHHHHHHHHccCCC-HHHHHHHHH-HHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhcccccceeeeee
Confidence 999999999999998876655 666666666 4455543 44 5567889999999999999998774 35777788
Q ss_pred ecCC
Q 030724 165 AGPS 168 (172)
Q Consensus 165 ~GN~ 168 (172)
.|+-
T Consensus 906 ~g~~ 909 (937)
T COG1025 906 RGQN 909 (937)
T ss_pred eccc
Confidence 8843
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=96.98 E-value=0.011 Score=52.53 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=104.3
Q ss_pred ceeEEEEEEeCCCCCCC-----HHHHHHH--------HHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCc
Q 030724 5 PKAFVKIYFNCPHASSS-----PESEVLT--------DIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s-----~~~~~~~--------~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~ 71 (172)
|....+|.|.++.-.++ .++.+++ +.|..+++.+|+...-.... -++.+.+-. +-=-+
T Consensus 41 ~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~--~D~T~YP~s-------S~~~~ 111 (978)
T COG1026 41 PNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTF--PDKTVYPAS-------SANEK 111 (978)
T ss_pred cCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccC--CCcceeecc-------ccCcc
Confidence 56677788887664433 3344444 56666777776664322111 122222110 01123
Q ss_pred cHHHHHHHHHHHhhcCCcChhhHHHHHHH--------------HHHHhhhcccCChHHHHHHHHHHhccCC-CC--CHHH
Q 030724 72 KLRILLETIFQKIAQFKVKPDRFSVIKEM--------------VTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWME 134 (172)
Q Consensus 72 k~~~ll~~i~~~l~~~~~~~~~F~~~k~~--------------~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~--~~~~ 134 (172)
.+..++..-++.+.+|-.+++.|.+=--+ +-.+.++...+ |.......+...+++. .| ....
T Consensus 112 Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss-~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 112 DFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSS-GESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred hHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccC-chhHHHHHHHHhhCCCccccccCCC
Confidence 56788999999999998888887653222 22334445555 8888888888888875 22 3345
Q ss_pred HHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCCCC
Q 030724 135 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSI 171 (172)
Q Consensus 135 ~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~~ 171 (172)
.-..|..+|+|++++|+++++++.+.-.+++||++.+
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~ 227 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTE 227 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEECCCCHH
Confidence 6788999999999999999999999999999999753
No 17
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=96.61 E-value=0.018 Score=40.54 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=30.5
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhc---CCcChhhHHHHHHHH
Q 030724 62 FEVTVVGYNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMV 101 (172)
Q Consensus 62 l~i~i~G~s~k~~~ll~~i~~~l~~---~~~~~~~F~~~k~~~ 101 (172)
+.+.+.+-.++...+++.+.+.+.. ..+++++|+++|.++
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6788888877887777777776655 359999999999875
No 18
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=96.39 E-value=0.17 Score=45.27 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=103.1
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-hhhcc-------chhcceEEEeeeCC---------eeEEEEeecC
Q 030724 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-YAYYA-------QVAGLDYGINHTES---------GFEVTVVGYN 70 (172)
Q Consensus 8 ~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e-~~y~a-------~~agl~~~~~~~~~---------gl~i~i~G~s 70 (172)
++.+.+..|.. +..-.-+..||+..+...-.+ ..|.. -.-|++.+.++..+ .+.|++...+
T Consensus 550 yl~~~~~~~~l--~~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~ 627 (978)
T COG1026 550 YLRLYFDLDML--PSELLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALR 627 (978)
T ss_pred EEEEEeecCCC--ChhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehh
Confidence 34444555433 344455667777766553222 11111 11255555544322 4788888899
Q ss_pred ccHHHHHHHHHHHhhcCCc-ChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC--------CCCHHHHHhhCCC
Q 030724 71 HKLRILLETIFQKIAQFKV-KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ--------TWPWMEELEVLPH 141 (172)
Q Consensus 71 ~k~~~ll~~i~~~l~~~~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~--------~~~~~~~l~~L~~ 141 (172)
+|...+++.|-+.+.+..+ +.++...+.++...++.+.....+...|......-+... ..+....+..|..
T Consensus 628 ~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~ 707 (978)
T COG1026 628 SKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSS 707 (978)
T ss_pred hhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHH
Confidence 9999999999999999999 778888888889999999888878888877765555432 1112222332211
Q ss_pred -----CC---HHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 142 -----LE---AEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 142 -----it---~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
.. .+-+++.+++++...++.+++.|+++.
T Consensus 708 ~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~ 744 (978)
T COG1026 708 NFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDK 744 (978)
T ss_pred hhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhh
Confidence 11 224567777888888888999998764
No 19
>PTZ00432 falcilysin; Provisional
Probab=96.38 E-value=0.09 Score=48.37 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=103.3
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------cchhcceEEEeeeC--------------CeeEEE
Q 030724 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDYGINHTE--------------SGFEVT 65 (172)
Q Consensus 8 ~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~-~l~e~~y~-------a~~agl~~~~~~~~--------------~gl~i~ 65 (172)
.+.+++..+...-+....-+..||+.++.+ ......|. ...-|+++++.... ..+.++
T Consensus 681 i~y~~~~fdl~~l~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 760 (1119)
T PTZ00432 681 ILYLDFAFSLDSLTVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVR 760 (1119)
T ss_pred eEEEEEEecCCCCCHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEE
Confidence 334444444333456667788888888865 11222222 22236666544422 158999
Q ss_pred EeecCccHHHHHHHHHHHhhcCCcCh-hhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-----CCC---HHHHH
Q 030724 66 VVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWP---WMEEL 136 (172)
Q Consensus 66 i~G~s~k~~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-----~~~---~~~~l 136 (172)
+...++|++.+++.+-+.+.+..++. ++...+.++...++.+......+..|...+..-+... .++ ....+
T Consensus 761 ~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~fl 840 (1119)
T PTZ00432 761 AKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFL 840 (1119)
T ss_pred EEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999875 5588888888888988888668888887665444421 112 11222
Q ss_pred hhC----CCCC----HHHHHHHHHHHhcchheeEEeecCC
Q 030724 137 EVL----PHLE----AEDLAKFVPMMLSRTFLECYIAGPS 168 (172)
Q Consensus 137 ~~L----~~it----~ed~~~f~~~~~~~~~~~~lv~GN~ 168 (172)
..| .+-. .+.+.+..+.+++..++.+.|+|+.
T Consensus 841 ~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~ 880 (1119)
T PTZ00432 841 KETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDS 880 (1119)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCH
Confidence 211 1111 2335567777888889999999975
No 20
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.1 Score=46.83 Aligned_cols=162 Identities=11% Similarity=0.016 Sum_probs=108.9
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh----hhh---hhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHH
Q 030724 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL----NEY---AYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (172)
Q Consensus 7 ~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l----~e~---~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~ 79 (172)
+...+.+..++..+....++++-+..-++=-+. .|- .|.++- |-+.+.......-...+.--.++++..|..
T Consensus 50 ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~-gGssNA~T~~e~T~y~F~V~~~~l~~ALDr 128 (974)
T KOG0959|consen 50 SSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKN-GGSSNAYTDSEHTNYYFDVQHDHLEGALDR 128 (974)
T ss_pred cceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhc-CCccccccccccceEEEecchHHHHHHHHH
Confidence 445566666667666666888887776664222 111 222333 333344333333344444467889999999
Q ss_pred HHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCC-----HHHHHHHH
Q 030724 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLE-----AEDLAKFV 151 (172)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it-----~ed~~~f~ 151 (172)
+++.+..|-++++.-++=+..+..++++....+-.. -..+...+..++ +++ .....++|.+.. .+.+.+|+
T Consensus 129 FaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr-~~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~~~~r~~L~kF~ 207 (974)
T KOG0959|consen 129 FAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWR-FDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFY 207 (974)
T ss_pred HHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhH-HHHHHHHhcCCCCcchhccccchhhhhhccccchHHHHHHHHH
Confidence 999999999999999999999999999988774433 233333444433 333 123455666655 88999999
Q ss_pred HHHhcchheeEEeecCCCC
Q 030724 152 PMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 152 ~~~~~~~~~~~lv~GN~~~ 170 (172)
++|++...+.+.|+|+-+-
T Consensus 208 k~~Yssn~M~l~i~G~esl 226 (974)
T KOG0959|consen 208 KNWYSSNIMTLVIVGKESL 226 (974)
T ss_pred HhhcccccceEEEEcCCCh
Confidence 9999999999999997553
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.059 Score=46.44 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=74.7
Q ss_pred eeEEEEeecCccHHHHHHHHHHHhhcCCcChhhHHHHHHH----------HHHHhhhcccCChHHHHHHHHHHhccCC--
Q 030724 61 GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEM----------VTKEYHNNKFLQPFQLAMYYCSLILQDQ-- 128 (172)
Q Consensus 61 gl~i~i~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~----------~~~~~~n~~~~~p~~~a~~~~~~~l~~~-- 128 (172)
...++..| +|.+-.++...++.+..|.++.+.|..-.-. +-.+.++...+ -.....+-...++++.
T Consensus 100 ~YtLStag-~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~-~~~im~~~~~~~~yP~~s 177 (1022)
T KOG0961|consen 100 AYTLSTAG-SDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESE-MESIMDRKTKEVIYPPFS 177 (1022)
T ss_pred eEEeeccc-ccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcc-cchhhhhhhheeecCCCC
Confidence 34444444 3566778888888889999998888765432 22233333333 2233444455666654
Q ss_pred -C-CCHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCCCC
Q 030724 129 -T-WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSI 171 (172)
Q Consensus 129 -~-~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~~ 171 (172)
+ +.......-|.++|.|.+++|+++++...++-+.|-|+++.+
T Consensus 178 gY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d 222 (1022)
T KOG0961|consen 178 GYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHD 222 (1022)
T ss_pred CceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHH
Confidence 2 224457888899999999999999999999999999999753
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=92.54 E-value=0.35 Score=36.79 Aligned_cols=112 Identities=15% Similarity=0.261 Sum_probs=66.3
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------cchhcceEEEeeeC---------CeeEEEEeec
Q 030724 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDYGINHTE---------SGFEVTVVGY 69 (172)
Q Consensus 7 ~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~-~l~e~~y~-------a~~agl~~~~~~~~---------~gl~i~i~G~ 69 (172)
+++++.|..+.. +.+..-+..|++.++.+ ......|. .-.-|+++++.... .++.++..+.
T Consensus 92 ~Y~~l~fdl~~l--~~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L 169 (248)
T PF08367_consen 92 VYVRLYFDLSDL--PEEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCL 169 (248)
T ss_dssp EEEEEEEE-TTS---CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEE
T ss_pred EEEEEEecCCCC--CHHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeH
Confidence 455555655533 33334556666666543 11111121 12236766664421 1589999999
Q ss_pred CccHHHHHHHHHHHhhcCCcCh-hhHHHHHHHHHHHhhhcccCChHHHHHHH
Q 030724 70 NHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYY 120 (172)
Q Consensus 70 s~k~~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~ 120 (172)
++|++.+++.+-+.|.+..++. ++...+..+....+.+......+..|...
T Consensus 170 ~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A~~r 221 (248)
T PF08367_consen 170 DEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYAMSR 221 (248)
T ss_dssp GGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999999999875 56666667777777776655454444433
No 23
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=2.7 Score=36.75 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=70.3
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC---CCCHH-----
Q 030724 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWM----- 133 (172)
Q Consensus 62 l~i~i~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~---~~~~~----- 133 (172)
+.++|..=.++-+..++.+-..+...-+++++-....++++.++.....+ .-..+..+...-++.. .++.+
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRd-g~~vlss~~~~~lY~~~slk~s~d~L~~E 714 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRD-GCTVLSSAVASMLYGKNSLKISFDELVLE 714 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcC-ccEehHHHHHHHHhcccchhhcccHHHHH
Confidence 57778777888888899998889898999999999999999998887766 4344444444444432 23322
Q ss_pred HHHhhC----CC---CCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 134 EELEVL----PH---LEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 134 ~~l~~L----~~---it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
.+++.| +. .-++.+....+-.+....+.+.|.|+|++
T Consensus 715 k~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~k 758 (1022)
T KOG0961|consen 715 KLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDK 758 (1022)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhc
Confidence 223222 11 11333444444223455688899999986
No 24
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=33 Score=30.52 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=96.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccch-hcce--EEEeeeCC------eeEEEEeecC----ccHHHHH
Q 030724 11 IYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV-AGLD--YGINHTES------GFEVTVVGYN----HKLRILL 77 (172)
Q Consensus 11 ~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~-agl~--~~~~~~~~------gl~i~i~G~s----~k~~~ll 77 (172)
+.+.++...+ ...+-...++..++.+.-+.-.|.|.. .|+. ++++.+.+ -+++.+.|-+ +++.+++
T Consensus 317 ~s~L~~~p~d-~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV 395 (998)
T KOG2019|consen 317 NSFLSNDPLD-TYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELV 395 (998)
T ss_pred EEeecCCchh-HHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHH
Confidence 4444444332 233444455566666666666666643 3554 44443322 3799999999 4688889
Q ss_pred HHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC---HHHHHhhCCCC----CHHHHHH
Q 030724 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP---WMEELEVLPHL----EAEDLAK 149 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~---~~~~l~~L~~i----t~ed~~~ 149 (172)
..+++.+..-.++.++.+.+..++.-+++......-..++........... ++. .++.++.++.- +-.=|+.
T Consensus 396 ~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~ 475 (998)
T KOG2019|consen 396 MNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQP 475 (998)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHH
Confidence 999999988889999999999999888887776655566666666666542 333 35555555432 2233677
Q ss_pred HHHHHh-cch-heeEEeecC
Q 030724 150 FVPMML-SRT-FLECYIAGP 167 (172)
Q Consensus 150 f~~~~~-~~~-~~~~lv~GN 167 (172)
.+++++ ++- .+..-+.++
T Consensus 476 lIkkYilnn~h~~t~smqpd 495 (998)
T KOG2019|consen 476 LIKKYILNNPHCFTFSMQPD 495 (998)
T ss_pred HHHHHHhcCCceEEEEecCC
Confidence 777776 222 444444443
No 25
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=80.90 E-value=30 Score=28.43 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred EeeeCCee-EEEEeecCccHHHHHHHHHHHhhcCCcC---hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCC
Q 030724 55 INHTESGF-EVTVVGYNHKLRILLETIFQKIAQFKVK---PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW 130 (172)
Q Consensus 55 ~~~~~~gl-~i~i~G~s~k~~~ll~~i~~~l~~~~~~---~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~ 130 (172)
...++.|+ .+.+.+=..+.-..++-....++..... ...=.-+...+...+.+.. . |+..+......+..
T Consensus 310 a~ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~-~-a~~~~~~~~a~~~~---- 383 (429)
T KOG2583|consen 310 APYSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSV-E-ALELATGSQANLVS---- 383 (429)
T ss_pred ccccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcch-H-HHHHhhHHHhcCCC----
Confidence 34455564 7777777777888888888888775532 2222222223333333222 2 44544444433322
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 131 PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 131 ~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
++++.+.+++++|-.|+.+..+++.+. .+....+||++.
T Consensus 384 ~~d~~i~~id~Vt~sdV~~a~kk~~s~-kls~aA~Gnl~~ 422 (429)
T KOG2583|consen 384 EPDAFIQQIDKVTASDVQKAAKKFLSG-KLSLAAYGNLSN 422 (429)
T ss_pred ChHHHHHHhccccHHHHHHHHHHhccC-cceeeeeccccC
Confidence 788999999999999999999999833 466677899863
No 26
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=79.89 E-value=2.5 Score=37.05 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhccCC-CCCHH--HHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 113 PFQLAMYYCSLILQDQ-TWPWM--EELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 113 p~~~a~~~~~~~l~~~-~~~~~--~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
|...-...+.+.|++. .|+.. .---.+.++|+|++++|+.+.+.+.+.+.+-+||+.
T Consensus 202 ~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~P 261 (998)
T KOG2019|consen 202 PDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFP 261 (998)
T ss_pred hhHHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCch
Confidence 4333444445666654 45432 224578899999999999999999999999999964
No 27
>PRK14420 acylphosphatase; Provisional
Probab=70.17 E-value=9.8 Score=24.13 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=31.9
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~~ 83 (172)
.|...|+.-.+....+| +.|.+.|-.+++..++..+-+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 24 EADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 46667888888877888 9999999998888888887654
No 28
>PRK14425 acylphosphatase; Provisional
Probab=68.32 E-value=9.9 Score=24.37 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.4
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
..|...|+.-.+....+| +.|.+.|-.+.+..++..+-+
T Consensus 27 ~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 27 DEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred HHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 356677888888888888 999999999998888888753
No 29
>PRK14429 acylphosphatase; Provisional
Probab=67.51 E-value=12 Score=23.73 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=32.1
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
..|...|++-.+....+| +.|.+.|-.+++..++..+-+
T Consensus 23 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 23 TKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 356677888888877888 999999999998888887764
No 30
>PRK14430 acylphosphatase; Provisional
Probab=67.44 E-value=10 Score=24.22 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=30.7
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i 80 (172)
..|...|+.-.+....+| +.+.++|-.+++..++..+
T Consensus 25 ~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 25 DAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 356677888777777788 9999999999988888777
No 31
>PRK14431 acylphosphatase; Provisional
Probab=65.70 E-value=12 Score=23.72 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=30.7
Q ss_pred ccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~ 82 (172)
.|...|++-.+....+|+.+.++|-.+.+..++..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 24 IAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 56667887777666779999999999998888877765
No 32
>PRK14440 acylphosphatase; Provisional
Probab=64.95 E-value=12 Score=23.72 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=30.2
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+++..++..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 25 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 46667887777777788 99999999999888887775
No 33
>PRK14444 acylphosphatase; Provisional
Probab=63.71 E-value=13 Score=23.65 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=31.3
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
..|...|++-.+....+| +.+.+.|-.+++..++..+-
T Consensus 25 ~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 25 DRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 356667888888877888 89999999999888888865
No 34
>PRK14435 acylphosphatase; Provisional
Probab=63.45 E-value=14 Score=23.38 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.3
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|++-.+....+| +.+.+.|-.+++..++..+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 24 VAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 56667888777777777 99999999999888888775
No 35
>PRK14449 acylphosphatase; Provisional
Probab=63.44 E-value=15 Score=23.21 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.2
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~~ 83 (172)
.|...|+.-.+....+| +.|.+.|-.+++..++..+-+.
T Consensus 25 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 25 KAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 45566887778777788 9999999999988888877653
No 36
>PRK14451 acylphosphatase; Provisional
Probab=63.13 E-value=14 Score=23.35 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=31.4
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
..|...|++-.+....+| +.+.+.|-.+++..++..+.
T Consensus 24 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 24 KLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 356677888888887888 99999999989888877775
No 37
>PRK14445 acylphosphatase; Provisional
Probab=62.04 E-value=16 Score=23.15 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=31.4
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
..|...|+.-.+....+| +.+.+.|-.+++..++..+.
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 25 RAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred HHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 356677888888877888 99999999989888888775
No 38
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=60.65 E-value=21 Score=21.53 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhccC--CCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 030724 113 PFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKFVPMM 154 (172)
Q Consensus 113 p~~~a~~~~~~~l~~--~~~~~~~~l~~L~~it~ed~~~f~~~~ 154 (172)
+..++..++...... +..+...+.++|..+...|+.+.+++.
T Consensus 39 ~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 445566665544443 578899999999999999999888765
No 39
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=60.64 E-value=69 Score=24.63 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-----------~---~ 90 (172)
..+..++...+.+...+. ..+|+.|.+.|--+.+|.-+...++.+...+ + .
T Consensus 80 ~~Lm~l~~~~l~~~~~~~---------------~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~Ygg 144 (253)
T PRK14836 80 SALMELFLKALDREVDKL---------------HRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGG 144 (253)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCC
Confidence 556666666666544432 2368889999988888887777776665322 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ 126 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~ 126 (172)
.++...+..++.++.++.... |-....+.+...|.
T Consensus 145 R~EI~~A~k~l~~~~~~g~l~-~~~i~e~~i~~~L~ 179 (253)
T PRK14836 145 RWDIVTAARALAREVAAGKLA-PDEIDEALLAQHLA 179 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-hHhCCHHHHHHHhc
Confidence 455566666666665544443 54444455544444
No 40
>PRK14436 acylphosphatase; Provisional
Probab=60.53 E-value=17 Score=23.18 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.4
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+++..++..+-
T Consensus 26 ~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14436 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHh
Confidence 45667888888777888 99999999999888888665
No 41
>PRK14428 acylphosphatase; Provisional
Probab=60.20 E-value=17 Score=23.54 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.9
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 30 ~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 30 QARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 46667888888877778 99999999999888888775
No 42
>PRK14447 acylphosphatase; Provisional
Probab=59.80 E-value=18 Score=23.16 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.5
Q ss_pred ccchhcceEEEeeeCCe--eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g--l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+++..++..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 26 VANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 46667888777777788 99999999999988888664
No 43
>PRK14448 acylphosphatase; Provisional
Probab=58.96 E-value=19 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|++-.+....+| +.|.+.|-.+++..+++.+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 24 EATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45666787777777778 99999999999888888884
No 44
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=58.94 E-value=21 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=29.5
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-+
T Consensus 26 ~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 26 IARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 45666887778888888 999999988888888877766
No 45
>PRK14427 acylphosphatase; Provisional
Probab=58.89 E-value=21 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.3
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~~ 83 (172)
.|...|++-.+....+| +.+.+.|-.+++..++..+-+.
T Consensus 28 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~~ 67 (94)
T PRK14427 28 KAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNSD 67 (94)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 46667888777777788 9999999999988888877653
No 46
>PRK14446 acylphosphatase; Provisional
Probab=58.87 E-value=19 Score=22.79 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=30.5
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
..|...|+.-.+....+| +.|.+.|-.+.+..++..+-
T Consensus 23 ~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 23 ERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred HHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 356677888888888889 99999998887777776664
No 47
>PRK14424 acylphosphatase; Provisional
Probab=58.65 E-value=19 Score=23.11 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=29.8
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.|.+.|-.+.+..++..+-
T Consensus 29 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 29 EAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 46667787777766778 99999999999888887774
No 48
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=58.47 E-value=22 Score=17.63 Aligned_cols=24 Identities=4% Similarity=0.074 Sum_probs=17.1
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHH
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVT 102 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~ 102 (172)
.+-+....-.+++++|+..|.+++
T Consensus 7 ~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHh
Confidence 333444445589999999999875
No 49
>PRK14438 acylphosphatase; Provisional
Probab=58.31 E-value=20 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=30.1
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+++..++..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 25 TAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 45667888888777888 89999999988888887774
No 50
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=58.16 E-value=11 Score=26.99 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 99 EMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 99 ~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
-+-+.+|++.+.+.+-......-..+. .-..+..++++++|.||+++|++.+.
T Consensus 31 ~kt~eeWe~wY~~~~~e~i~~a~~ki~----~~i~e~~~a~~~it~ed~~~wv~dLv 83 (170)
T PF09568_consen 31 PKTIEEWEEWYFEKYPEAIEEATDKIY----VMITEVKEALNKITEEDCINWVKDLV 83 (170)
T ss_pred CCCHHHHHHHHHhcChHHHHHHHHHHH----HHHHHHHHHHHhCCHHHHHHHHHHhe
Confidence 344566777666543222222222211 12467778999999999999999865
No 51
>PRK14422 acylphosphatase; Provisional
Probab=58.02 E-value=21 Score=22.76 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=31.4
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
.|...|+.-.+....+| +.+.+.|-.+++..++..+.+
T Consensus 28 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 28 RALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 46667888777777888 999999999998888887765
No 52
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=57.56 E-value=46 Score=24.34 Aligned_cols=54 Identities=7% Similarity=0.114 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhh----hhhhhccchhcceE--EEeeeCCeeEEE-EeecCcc
Q 030724 19 SSSPESEVLTDIFTRLLLDYL----NEYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (172)
Q Consensus 19 ~~s~~~~~~~~l~~~ll~~~l----~e~~y~a~~agl~~--~~~~~~~gl~i~-i~G~s~k 72 (172)
.++.+..+++..+..+++..+ .-..|..+..|..| .+...++++.|+ .-|||+-
T Consensus 59 ~~~kk~~al~Gt~rslI~NMI~GVt~GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~ 119 (189)
T PTZ00179 59 FGSKIPNSTINTALSHVRNMITGVTKGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRV 119 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCcc
Confidence 345667788999998888766 33567778888888 777777777776 7899864
No 53
>PRK14423 acylphosphatase; Provisional
Probab=57.36 E-value=21 Score=22.71 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=29.2
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.|.+.|-.+++..++..+-
T Consensus 27 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 64 (92)
T PRK14423 27 TARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCH 64 (92)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 46667888777777788 89999998888777777665
No 54
>PRK14426 acylphosphatase; Provisional
Probab=57.00 E-value=22 Score=22.64 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.3
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
..|...|+.-.+....+| +.+.+.|-.+++..++..+-+
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 25 HEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 356667887777766666 999999999998888777753
No 55
>PRK14442 acylphosphatase; Provisional
Probab=55.67 E-value=22 Score=22.54 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=31.3
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
..|...|++-.+....+| +.+.+.|-.+++..++..+-
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 25 EEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred HHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 356677898888888888 99999998888888877774
No 56
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=55.16 E-value=73 Score=23.11 Aligned_cols=54 Identities=6% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceE--EEeeeCCeeEEE-EeecCcc
Q 030724 19 SSSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (172)
Q Consensus 19 ~~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~--~~~~~~~gl~i~-i~G~s~k 72 (172)
.++.+..++..++..+++..+.= ..+..+..|..| .....++++.++ .-|||+-
T Consensus 58 ~~~kk~ra~~gt~rslI~NmI~GVt~Gf~~~LelvGvGypira~~~g~~l~l~n~LG~Sh~ 118 (180)
T PRK05518 58 FARKKTKAMVGTFASHIKNMIKGVTEGFEYKLKIVYSHFPMQVKVQGNEVVIENFLGEKSP 118 (180)
T ss_pred CCCHHHHHHHHHHHHHHHhhheecccceEEEEEEEecCccEEEEEcCCEEEEEecccccee
Confidence 35677788999999988876632 456667777777 666666666554 5788853
No 57
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=54.69 E-value=76 Score=22.76 Aligned_cols=53 Identities=6% Similarity=0.219 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceE--EEeeeCCeeEEE-EeecCcc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~--~~~~~~~gl~i~-i~G~s~k 72 (172)
++.+..+++.++..+++..+.= ..+..+..|..| .....++++.++ --|||+-
T Consensus 53 ~~k~~~a~~gt~rsli~NmI~GVt~Gf~~~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~ 112 (170)
T TIGR03653 53 ARKKDKAMVGTYRSHIKNMIKGVTEGFEYKMKVVYSHFPMQVKVEGNKVVIENFLGEKAP 112 (170)
T ss_pred CCHHHHHHHHHHHHHHHhheeecccCeEEEEEEEeccccEEEEEcCCeEEEeecccccee
Confidence 4566678889999988876522 455666677777 555555666554 4688853
No 58
>PRK14421 acylphosphatase; Provisional
Probab=54.36 E-value=23 Score=22.95 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=30.3
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|++-.+....+| +.+.+.|-.+++..++..+.
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 26 TAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred HHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 45667888778777788 99999999999888887775
No 59
>PRK14433 acylphosphatase; Provisional
Probab=53.67 E-value=27 Score=22.01 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=29.3
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|++-.+....+| ++|.+.|-.+.+..++..+-
T Consensus 23 ~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 23 KARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 45566777777777788 99999999988888877774
No 60
>PRK14441 acylphosphatase; Provisional
Probab=53.61 E-value=27 Score=22.26 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=30.8
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
..|...|+.-.+....+| +.+.++|-.+.+..++..+-
T Consensus 26 ~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 26 DEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred HHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 356777888888877888 99999998888888877763
No 61
>PRK14443 acylphosphatase; Provisional
Probab=52.96 E-value=26 Score=22.45 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=29.5
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
.|...|+.-.+....+| +.|.+.|-.+.+..++..+.+
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 26 VAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 46667887777766666 999999998888777777755
No 62
>PRK14452 acylphosphatase; Provisional
Probab=52.74 E-value=25 Score=23.15 Aligned_cols=37 Identities=24% Similarity=0.099 Sum_probs=29.5
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i 80 (172)
..|...|+.-.+....+| +.|.+.|-.+.+..+...+
T Consensus 41 ~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l 78 (107)
T PRK14452 41 RRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWC 78 (107)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHH
Confidence 356777898888888888 9999999998887774333
No 63
>PRK14450 acylphosphatase; Provisional
Probab=51.41 E-value=30 Score=21.91 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=29.4
Q ss_pred ccchhcceEEEeeeCCe--eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g--l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.++|-.+.+..++..+-
T Consensus 24 ~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 24 QATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 45667887777776788 89999999888888888774
No 64
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=50.85 E-value=92 Score=22.47 Aligned_cols=51 Identities=16% Similarity=0.377 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceEEEeeeCCeeEEEEeecCc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~ 71 (172)
++.+..+++..+..+++..+.- ..|.....|..|.+...++.+.+ .-|||+
T Consensus 57 ~~k~~~a~~gt~~slI~Nmi~GVt~Gf~~~L~lvGvGyr~~~~g~~l~l-~LG~sh 111 (178)
T CHL00140 57 ESKKARALHGLYRTLINNMVIGVSEGFEKKLELQGVGYRAQVQGKDLIL-NLGYSH 111 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEEEEEEeCCcEEE-EecCCe
Confidence 4566678888888888876644 55677777888888887777777 778885
No 65
>PRK14437 acylphosphatase; Provisional
Probab=50.76 E-value=30 Score=22.89 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=30.5
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.|.+.|-.+.+..++..+-
T Consensus 45 ~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 45 KAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred HHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 56667888888888888 99999998888888777774
No 66
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=50.31 E-value=93 Score=22.36 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceEEEeeeCCeeEEEEeecCcc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k 72 (172)
++.+..+++..+..+++..+.- ..|.....|..|.+...++.+.+ .-|||+.
T Consensus 56 ~~kk~~a~~gt~~s~i~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 111 (175)
T TIGR03654 56 DSKEARALHGTTRALINNMVIGVSEGFEKKLEIVGVGYRAQLQGKKLNL-SLGYSHP 111 (175)
T ss_pred CCHHHHHHHHHHHHHHHHHhheeccCcEEEEEEEEEEEEEEEeCCeEEE-EecCcee
Confidence 4566678888888888886643 55677888888888888788877 7788853
No 67
>PRK14434 acylphosphatase; Provisional
Probab=49.46 E-value=38 Score=21.54 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred ccchhc-ceEEEeeeCCe-eEEEEeecC-ccHHHHHHHHHH
Q 030724 45 YAQVAG-LDYGINHTESG-FEVTVVGYN-HKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~ag-l~~~~~~~~~g-l~i~i~G~s-~k~~~ll~~i~~ 82 (172)
.|...| +.-.+....+| +.|.+.|-. +++..++..+.+
T Consensus 24 ~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 24 LALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 455667 87777777888 999999987 588887777654
No 68
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=47.77 E-value=69 Score=20.15 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCC-cChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHH
Q 030724 77 LETIFQKIAQFK-VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFV 151 (172)
Q Consensus 77 l~~i~~~l~~~~-~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~ 151 (172)
+..|++.|..-. +++++.+.++.+- .+..+|...+..+..+++....-.+++|++..+.++.+..
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~----------t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~lL 81 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA----------TQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLALLL 81 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC----------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHHHH
Confidence 344666666554 6777777766521 2467777777787777777777778888877666666554
No 69
>PRK14432 acylphosphatase; Provisional
Probab=47.58 E-value=40 Score=21.49 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=30.6
Q ss_pred ccchhcceEEEeeeCCe-eEEEEe-ecCccHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVV-GYNHKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~-G~s~k~~~ll~~i~~ 82 (172)
.|...|+.-.+....+| +.+.+. |-.+++..++..+-+
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 24 IANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 56667888777777788 999998 999998888876654
No 70
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.60 E-value=1.4e+02 Score=22.96 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=58.7
Q ss_pred CCCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 2 FSTPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 2 F~~Pk~~i~~~~~~~~~~~s~~~-~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
++++.++++. |.+.+...+++. ..+.+|+...+.+.+... ..+|+.|.+.|--+.+|.-+...
T Consensus 65 ~GI~~vTvYa-FS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~---------------~~~~iri~viG~~~~Lp~~~~~~ 128 (251)
T PRK14830 65 LGVKVLTLYA-FSTENWKRPKDEVKFLMNLPVEFLDKFVPEL---------------IENNVKVNVIGDTDRLPEHTLRA 128 (251)
T ss_pred cCCCEEEEEE-EehhhcCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHcCCEEEEEcChhhCCHHHHHH
Confidence 4566666665 333333333322 455566666555544321 23678888888888777776666
Q ss_pred HHHhhcCC-----------c---ChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccC
Q 030724 81 FQKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 127 (172)
Q Consensus 81 ~~~l~~~~-----------~---~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~ 127 (172)
++.+...+ + ...+.-.+..++.++.+..... |-.+....+...|+.
T Consensus 129 ~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~l~-~~~I~e~~i~~~L~~ 188 (251)
T PRK14830 129 LEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLN-PEDITEELISNYLMT 188 (251)
T ss_pred HHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCC-hHhCCHHHHHHHhCc
Confidence 65554321 1 2455556666666655444433 444444555544543
No 71
>PRK14439 acylphosphatase; Provisional
Probab=45.51 E-value=38 Score=24.16 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=31.0
Q ss_pred hccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 44 y~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
..|...|+.-.+....+| +.|.++|-.+++..+++.+-+
T Consensus 96 ~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~ 135 (163)
T PRK14439 96 YEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKS 135 (163)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 356677888777776777 999999999998888777764
No 72
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=45.11 E-value=35 Score=21.39 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=38.4
Q ss_pred CCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC--CCCHHHHHhhCCCCCHHHHHHH
Q 030724 87 FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLAKF 150 (172)
Q Consensus 87 ~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~--~~~~~~~l~~L~~it~ed~~~f 150 (172)
..+++.+.+.++ .....+|..|+...+....... .-+...++++|.++.+.|+...
T Consensus 25 Lg~s~~dI~~i~--------~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~ 82 (84)
T cd08803 25 LNFSVDEINQIR--------VENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTL 82 (84)
T ss_pred cCCCHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHh
Confidence 445665555443 2223447788898887766653 4566789999999999998764
No 73
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.61 E-value=1.4e+02 Score=22.86 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-------c-------C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-------V-------K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-------~-------~ 90 (172)
..+.+|+...+.+.+... ..+|+.|.+.|--+.+|.-+...++.+...+ + .
T Consensus 80 ~~Lm~L~~~~l~~~~~~~---------------~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Ygg 144 (249)
T PRK14834 80 SDLFGLLRLFIRRDLAEL---------------HRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGS 144 (249)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCC
Confidence 556677777666543321 2468888888887777777766665554322 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ 126 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~ 126 (172)
.++...+..++.++..+.... |-......+...|.
T Consensus 145 r~EI~~A~k~~~~~~~~g~~~-~~dI~e~~i~~~L~ 179 (249)
T PRK14834 145 RDEIARAVRRLAREVAEGRLD-PASIDAETISANLD 179 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhc
Confidence 456666666666665555443 54555555555554
No 74
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=43.33 E-value=1.2e+02 Score=21.78 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceEEEeeeCCeeEEEEeecCcc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k 72 (172)
++.+..+++..+..+++..+.- ..|.....|..|.+...++.+.+ .-|||+-
T Consensus 57 ~~k~~~a~~gt~~s~I~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 112 (178)
T PRK05498 57 DSKKARALHGTTRALINNMVVGVTEGFEKKLEIVGVGYRAQVKGKKLNL-SLGYSHP 112 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEEeEEEEEEEeCCeEEE-EecCCEE
Confidence 3455677888888888776643 56677788888888887777877 6788853
No 75
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=43.16 E-value=73 Score=21.87 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=49.9
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhccc--CChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcc
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKF--LQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSR 157 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~--~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~ 157 (172)
=..+++-+++-.+|-+...+-.. |++... ..|++.+.-....+|-..+++..|..+..+-+--+-+.++++.+++.
T Consensus 37 ESqlrng~IsVreFVr~La~S~~-yr~~f~~~~~~~R~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lldS 114 (131)
T PF00427_consen 37 ESQLRNGQISVREFVRALAKSEL-YRKRFFEPNSNYRFIELAFKHLLGRAPYNQAEISAYSQILASQGFEAFIDALLDS 114 (131)
T ss_dssp HHHHHTTSS-HHHHHHHHHTSHH-HHHHHTTTS-HHHHHHHHHHHHCSS--SSHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcHHHHHHHHHcCHH-HHHHHcccccchHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcChHHHHHHHHCc
Confidence 34566667777777665432211 333332 25788888888999999999999988887777778888888888743
No 76
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=42.49 E-value=34 Score=18.28 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHhcchheeEEeecC
Q 030724 141 HLEAEDLAKFVPMMLSRTFLECYIAGP 167 (172)
Q Consensus 141 ~it~ed~~~f~~~~~~~~~~~~lv~GN 167 (172)
..+.+|+.+|++.+ ++ .--.+|+|+
T Consensus 17 Had~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 17 HADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp S-BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred CCCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 46789999999998 55 677788885
No 77
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=41.57 E-value=46 Score=20.61 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhccCC--CCCHHHHHhhCCCCCHHHHHHH
Q 030724 113 PFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLAKF 150 (172)
Q Consensus 113 p~~~a~~~~~~~l~~~--~~~~~~~l~~L~~it~ed~~~f 150 (172)
...++...+......+ .-+...+.++|..+...|+.+-
T Consensus 43 ~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 43 LAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHH
Confidence 5678888876666543 4677889999999999998764
No 78
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.66 E-value=1.7e+02 Score=22.43 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-----------~---~ 90 (172)
..+.+|+...+.+.+.+. ..+|+.|.+.|--+.+|.-+...++.+...+ + .
T Consensus 88 ~~Lm~L~~~~l~~~~~~~---------------~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Ygg 152 (250)
T PRK14840 88 AELFSLFNSQLDSQLPYL---------------HENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGG 152 (250)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCc
Confidence 566777777766544332 2368999999988888888888877775533 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ 126 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~ 126 (172)
.++.-.+..++.+..+..... |-.+....+...|.
T Consensus 153 r~EI~~A~~~~~~~v~~~~~~-~~~i~~~~i~~~L~ 187 (250)
T PRK14840 153 KDELVRAFKKLHQDLANKKIS-SDDISEELISSYLD 187 (250)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-hhhCCHHHHHHHhc
Confidence 455556666666655544443 44444555555554
No 79
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=39.32 E-value=42 Score=24.00 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHh-cchheeEEeecCCCCC
Q 030724 139 LPHLEAEDLAKFVPMML-SRTFLECYIAGPSVSI 171 (172)
Q Consensus 139 L~~it~ed~~~f~~~~~-~~~~~~~lv~GN~~~~ 171 (172)
|.+.+.+++++.++... .+.++...+.|+++.+
T Consensus 106 lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ 139 (169)
T PF01729_consen 106 LDNMSPEDLKEAVEELRELNPRVKIEASGGITLE 139 (169)
T ss_dssp EES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTT
T ss_pred ecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHH
Confidence 35678899998888654 3446889999999875
No 80
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.19 E-value=1.7e+02 Score=22.15 Aligned_cols=86 Identities=9% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-------c-------C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-------V-------K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-------~-------~ 90 (172)
..+.+|+...+.+.+... ..+|+.|.+.|--+.+|.-+...++.+...+ + .
T Consensus 59 ~~Lm~l~~~~l~~~~~~~---------------~~~~i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Ygg 123 (229)
T PRK10240 59 SALMELFVWALDSEVKSL---------------HRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGG 123 (229)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCC
Confidence 666777777666544332 2468899999988888777777776664422 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ 126 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~ 126 (172)
.++...+..++.+..++.... |-.+....+...|+
T Consensus 124 r~EI~~A~~~~~~~v~~g~~~-~~~i~e~~i~~~L~ 158 (229)
T PRK10240 124 RWDIVQGVRQLAEQVQQGNLQ-PDQIDEEMLNQHIC 158 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhc
Confidence 455666666666665555444 54544555554444
No 81
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=37.65 E-value=39 Score=20.56 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=20.3
Q ss_pred EeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 55 INHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 55 ~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
++.+.+.+.+.+.|-++++..+++.+
T Consensus 31 vd~~~~~~iie~tG~~~kid~fi~~l 56 (75)
T PF10369_consen 31 VDVSPDSIIIELTGTPEKIDAFIKLL 56 (75)
T ss_dssp EEEETTEEEEEEEE-HHHHHHHHHHS
T ss_pred EEECCCEEEEEEcCCHHHHHHHHHHh
Confidence 45567889999999999988887665
No 82
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=36.69 E-value=1.9e+02 Score=21.89 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-----------~---~ 90 (172)
..+++|+...+.+...+. ..+|+.+.+.|--+.+|.-+...++.+...+ + .
T Consensus 65 ~~Lm~L~~~~l~~~~~~~---------------~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Ygg 129 (226)
T TIGR00055 65 DFLMELFEKKLDREVKEL---------------HRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGG 129 (226)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC
Confidence 566677776666544332 2468889999988888887777776664432 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccC
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 127 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~ 127 (172)
.++.-.+..++.++..+-..+ |-......+...|+.
T Consensus 130 r~EI~~A~~~~~~~~~~g~~~-~~~i~e~~~~~~L~t 165 (226)
T TIGR00055 130 RNEILHAVKQIAEKVKSGKLL-PEDIDEETLNKHLYT 165 (226)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-hhhCCHHHHHHhhcc
Confidence 455566666666665554444 555555566555553
No 83
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=35.68 E-value=93 Score=20.78 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCC---c-ChhhHHHHHHHHHHHhhhcccCChHHH
Q 030724 75 ILLETIFQKIAQFK---V-KPDRFSVIKEMVTKEYHNNKFLQPFQL 116 (172)
Q Consensus 75 ~ll~~i~~~l~~~~---~-~~~~F~~~k~~~~~~~~n~~~~~p~~~ 116 (172)
.+|+.+.+.|...+ . +++.+..+|..+.+.|..+....|..+
T Consensus 40 HILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~Stp~~e 85 (113)
T PRK00810 40 HILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLDQ 85 (113)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccCCHhHH
Confidence 35677777776544 2 356689999999999999998878553
No 84
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=34.60 E-value=49 Score=20.79 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 143 EAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 143 t~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
+-+++.+|++.--+..-+.+++.|++..
T Consensus 2 ~a~eII~~I~~skKkTPVKvYv~G~l~~ 29 (83)
T PF08503_consen 2 DAEEIIRYIKNSKKKTPVKVYVKGDLAG 29 (83)
T ss_dssp HHHHHHHHHHHCTTB-EEEEEEEESCTC
T ss_pred CHHHHHHHHHhCCCCCCEEEEEeeeecC
Confidence 4578999999999999999999999764
No 85
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.24 E-value=2.3e+02 Score=21.86 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-----------~---~ 90 (172)
..+.+|+...+.+.+.+. ..+|+.+++.|--+.+|.-+...++.+...+ + .
T Consensus 84 ~~Lm~L~~~~l~~~~~~~---------------~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Ygg 148 (253)
T PRK14832 84 DFLMLLFERLLRRELAQM---------------HREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGS 148 (253)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC
Confidence 455666666665543321 2468889999988888887777776664432 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ 126 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~ 126 (172)
.++-..+..++.+..+..... |-..-...+...|+
T Consensus 149 r~EI~~A~k~~~~~v~~g~~~-~~~i~e~~i~~~L~ 183 (253)
T PRK14832 149 RNEITRACRQVAELVQQGKLS-ADAVNEQLVEQHLY 183 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-hhhCCHHHHHHhhC
Confidence 455555555665555443333 43333444444444
No 86
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=32.62 E-value=47 Score=22.06 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=37.1
Q ss_pred CccHHHHHHHHHHHhhcCC--cChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCC
Q 030724 70 NHKLRILLETIFQKIAQFK--VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPH 141 (172)
Q Consensus 70 s~k~~~ll~~i~~~l~~~~--~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~ 141 (172)
-..+...-..++..+...+ ++.+.|+..|.+.+-.+--.. |-..+ .++...++.+.++..+++..|..
T Consensus 40 g~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~---P~~~~-~~L~~~f~~~~~Sl~qR~~iL~~ 109 (114)
T PF10193_consen 40 GTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAA---PEKVA-PYLTEEFFSGDYSLQQRMSILSA 109 (114)
T ss_dssp -SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHS---GGGHH-H-HHHHHTTS---THHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh---hHHHH-HHHHHHHhcCCCCHHHHHHHHHH
Confidence 3345556666666666554 677889888887776654333 74444 44445566678888877665543
No 87
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=31.19 E-value=1.2e+02 Score=17.92 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhh-cCCcChhhHHHHHHHHHHH
Q 030724 73 LRILLETIFQKIA-QFKVKPDRFSVIKEMVTKE 104 (172)
Q Consensus 73 ~~~ll~~i~~~l~-~~~~~~~~F~~~k~~~~~~ 104 (172)
...|+..+.+.+. .+.++...+....+.++.+
T Consensus 25 ~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIek 57 (68)
T PF10557_consen 25 HDELINEVIEELKKRFPPSVSDIKKRIESLIEK 57 (68)
T ss_dssp HHHHHHHHHHHTTTTS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh
Confidence 4567777888877 6667777787777777654
No 88
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=30.31 E-value=1.3e+02 Score=18.31 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcCCcChhhHHHHHHHHHHHhh
Q 030724 73 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (172)
Q Consensus 73 ~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (172)
+..++..+-+.+...++++++|..+++-+.+-=+
T Consensus 8 ~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~ 41 (74)
T PF04444_consen 8 MARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ 41 (74)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 4566777777788889999999998876655433
No 89
>KOG4107 consensus MP1 adaptor interacting protein P14 [Signal transduction mechanisms]
Probab=29.53 E-value=1.7e+02 Score=19.25 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=36.4
Q ss_pred hhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHh
Q 030724 38 YLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI 84 (172)
Q Consensus 38 ~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l 84 (172)
.+.+.+-+|-.-|.+-.+-.+..|.-+.-+||-||-..+...|+..+
T Consensus 6 ALtqVLsQaNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAiasni 52 (125)
T KOG4107|consen 6 ALTQVLSQANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAIASNI 52 (125)
T ss_pred HHHHHHhhcccCCccceEEEcCCCcEEEecccCcchhHHHHHHHHHH
Confidence 34445556666788888888899999999999999777777776655
No 90
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.13 E-value=2.6e+02 Score=21.32 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=38.9
Q ss_pred CCeeEEEEeecCccHHHHHHHHHHHhhcCC-----------c---ChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHh
Q 030724 59 ESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI 124 (172)
Q Consensus 59 ~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-----------~---~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~ 124 (172)
.+|+.+.+.|-.+.+|.-+...++.+...+ + ..++.-.+..++.++.++.... |-......+...
T Consensus 99 ~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~~~-~~~i~e~~i~~~ 177 (243)
T PRK14829 99 EWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKIS-GDRVTEKMISDH 177 (243)
T ss_pred HcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCC-hHhCCHHHHHHH
Confidence 468889999988888766666555443321 1 2455555666666665544443 444444455444
Q ss_pred cc
Q 030724 125 LQ 126 (172)
Q Consensus 125 l~ 126 (172)
|+
T Consensus 178 L~ 179 (243)
T PRK14829 178 LY 179 (243)
T ss_pred hc
Confidence 44
No 91
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=29.01 E-value=1.4e+02 Score=18.73 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=39.7
Q ss_pred cCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccC--CCCCHHHHHhhCCCCCHHHHHHHH
Q 030724 86 QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKFV 151 (172)
Q Consensus 86 ~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~--~~~~~~~~l~~L~~it~ed~~~f~ 151 (172)
.+.+++...+.++.+. ..+-..|+...+...... ...+.+.+..+|..+.+.|+.+..
T Consensus 24 ~L~vs~~dI~~I~~e~--------p~~l~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~~~ 83 (84)
T cd08805 24 ELQFSVEDINRIRVEN--------PNSLLEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVNML 83 (84)
T ss_pred HcCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHHhh
Confidence 3557777766665542 122457777777666653 356777899999999999998753
No 92
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=28.54 E-value=1.7e+02 Score=28.80 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=47.8
Q ss_pred EEeecCccHHHHHHHHHHHhhcCCcC---------------hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCC
Q 030724 65 TVVGYNHKLRILLETIFQKIAQFKVK---------------PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT 129 (172)
Q Consensus 65 ~i~G~s~k~~~ll~~i~~~l~~~~~~---------------~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~ 129 (172)
-+.||..++...++.+++.++++.++ +...+...+.+..++.....+.|-+|...++...+....
T Consensus 797 IL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~ 876 (2196)
T KOG0368|consen 797 ILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLN 876 (2196)
T ss_pred HHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccc
Confidence 35688889999999999999998763 233455555666666666667898888888777665544
Q ss_pred CC
Q 030724 130 WP 131 (172)
Q Consensus 130 ~~ 131 (172)
..
T Consensus 877 ~~ 878 (2196)
T KOG0368|consen 877 RA 878 (2196)
T ss_pred cc
Confidence 33
No 93
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.51 E-value=1.5e+02 Score=18.40 Aligned_cols=37 Identities=8% Similarity=-0.137 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhccCC--CCCHHHHHhhCCCCCHHHHHH
Q 030724 113 PFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLAK 149 (172)
Q Consensus 113 p~~~a~~~~~~~l~~~--~~~~~~~l~~L~~it~ed~~~ 149 (172)
...++...+....... .-+.+.+.++|..+.+.|+.+
T Consensus 45 ~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~~~diae 83 (86)
T cd08318 45 IKMQAKQLLVAWQDREGSQATPETLITALNAAGLNEIAE 83 (86)
T ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHcCcHHHHH
Confidence 4677777776666543 466778889999998888764
No 94
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=28.04 E-value=42 Score=18.52 Aligned_cols=18 Identities=11% Similarity=0.438 Sum_probs=12.2
Q ss_pred hhCCCCCHHHHHHHHHHH
Q 030724 137 EVLPHLEAEDLAKFVPMM 154 (172)
Q Consensus 137 ~~L~~it~ed~~~f~~~~ 154 (172)
--|++||..++++|+..+
T Consensus 40 ~~i~~It~~~i~~~~~~l 57 (58)
T PF14659_consen 40 KKIKDITPRDIQNFINEL 57 (58)
T ss_dssp SBGGG--HHHHHHHHHHH
T ss_pred CcHHHCCHHHHHHHHHHc
Confidence 356788888988888765
No 95
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=27.85 E-value=1.8e+02 Score=19.12 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=31.0
Q ss_pred HHHHHHHHhhc----C-Cc-ChhhHHHHHHHHHHHhhhcccCChHHH
Q 030724 76 LLETIFQKIAQ----F-KV-KPDRFSVIKEMVTKEYHNNKFLQPFQL 116 (172)
Q Consensus 76 ll~~i~~~l~~----~-~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~ 116 (172)
+|+.+.+.|.. + .. .++.+..+|..+.+.|+.+....|..+
T Consensus 37 ILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~~Stp~~e 83 (105)
T PRK14102 37 ILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFLTSTPLEQ 83 (105)
T ss_pred HHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHccCChhhh
Confidence 56777777763 1 23 357799999999999999998878553
No 96
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=27.73 E-value=1.2e+02 Score=19.34 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=29.4
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~~ 83 (172)
.|...|++-.+..-.+| +.+-+.|..+.+..+++.+-+-
T Consensus 26 ~A~~lgl~G~V~N~~DGsVeiva~G~~~~v~~~~~~l~~g 65 (92)
T COG1254 26 EALRLGLTGWVKNLDDGSVEIVAEGPDEAVEKFIEWLRKG 65 (92)
T ss_pred HHHHCCCEEEEEECCCCeEEEEEEcCHHHHHHHHHHHHhC
Confidence 35556776666666676 9999999999988888777644
No 97
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=27.03 E-value=2.5e+02 Score=20.50 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhccchhcceEEEe--eeCCe--eEEE-EeecCcc
Q 030724 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGIN--HTESG--FEVT-VVGYNHK 72 (172)
Q Consensus 19 ~~s~~~~~~~~l~~~ll~~~l~----e~~y~a~~agl~~~~~--~~~~g--l~i~-i~G~s~k 72 (172)
.++.+..+++.++..+++..+. -..|..+..|..|.+. ...+| +.++ .-|||+.
T Consensus 60 ~~~~k~~a~~Gt~rslI~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~ 122 (190)
T PTZ00027 60 FGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRV 122 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCcee
Confidence 3456667888999998887663 3567778888888887 32344 6665 5788863
No 98
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=27.01 E-value=1.6e+02 Score=21.61 Aligned_cols=37 Identities=8% Similarity=0.291 Sum_probs=28.4
Q ss_pred cceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhc
Q 030724 50 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQ 86 (172)
Q Consensus 50 gl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~ 86 (172)
+..+.+....+++.|.+.|+.+.+.+....|-+....
T Consensus 24 ~~~~~v~~k~n~l~I~i~G~~~eike~~~~Ik~~~~~ 60 (190)
T PF09840_consen 24 SIYIYVEVKGNSLKIEIQGYEKEIKEAIRRIKELVRR 60 (190)
T ss_pred CcEEEEEEeCCEEEEEEecChHHHHHHHHHHHHHHHH
Confidence 3355677778999999999999888887777655543
No 99
>PF11693 DUF2990: Protein of unknown function (DUF2990); InterPro: IPR021706 This family of proteins represents a fungal protein with unknown function.
Probab=26.82 E-value=61 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.5
Q ss_pred EEeecCccHHHHHHHHHHHhhc
Q 030724 65 TVVGYNHKLRILLETIFQKIAQ 86 (172)
Q Consensus 65 ~i~G~s~k~~~ll~~i~~~l~~ 86 (172)
.+++|++.+.+++.+|.+.|-.
T Consensus 17 ~~Yd~S~dlaeFy~rVSk~I~~ 38 (64)
T PF11693_consen 17 NVYDYSDDLAEFYGRVSKYIES 38 (64)
T ss_pred ccccCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999887755
No 100
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=25.31 E-value=29 Score=21.65 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=37.6
Q ss_pred eeEEEEeecCccHHHHHHHHHHHhhcCCcChhhHHHHHHHHHHHhh
Q 030724 61 GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (172)
Q Consensus 61 gl~i~i~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (172)
-+.=+++||.+++.-++..+-+.+...+.+++.|+.+.....|.+.
T Consensus 27 el~G~L~afD~HlNmvL~d~eetit~~e~~E~~~e~~~k~~~r~~e 72 (91)
T KOG3460|consen 27 ELRGTLHAFDEHLNMVLGDVEETITTVEIDEDTYEEIVKTTKRTVE 72 (91)
T ss_pred hhhcchhhhHHhhhhhhhhhhheEEEeeccchhHHHHHhhhhccee
Confidence 3555788999999999999999999999999998888776666543
No 101
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.10 E-value=77 Score=15.74 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHH
Q 030724 140 PHLEAEDLAKFVPM 153 (172)
Q Consensus 140 ~~it~ed~~~f~~~ 153 (172)
.++|.+||++|.+.
T Consensus 15 ~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGLSKEEIREFLEF 28 (30)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 47999999998763
No 102
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.28 E-value=94 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 140 PHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 140 ~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
.+++++++.+..+..- +..++++|+|+..
T Consensus 68 ~EL~~~ei~~i~~~~~-~~~~Ev~v~G~~~ 96 (233)
T PF01136_consen 68 PELSLEEIKEIAENSP-GVPLEVIVHGNLP 96 (233)
T ss_pred ccCCHHHHHHHHHhCC-CCeEEEEEeCCcc
Confidence 4678999988877544 7789999999863
No 103
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=22.41 E-value=1.1e+02 Score=22.09 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHhc--chheeEEeecCC
Q 030724 141 HLEAEDLAKFVPMMLS--RTFLECYIAGPS 168 (172)
Q Consensus 141 ~it~ed~~~f~~~~~~--~~~~~~lv~GN~ 168 (172)
.=+++.+++|+..+.. +.-+..+|+||=
T Consensus 98 rdSFqKVKnWV~Elr~mlGnei~l~IVGNK 127 (218)
T KOG0088|consen 98 RDSFQKVKNWVLELRTMLGNEIELLIVGNK 127 (218)
T ss_pred hHHHHHHHHHHHHHHHHhCCeeEEEEecCc
Confidence 3457889999987653 557888999993
No 104
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.19 E-value=2.5e+02 Score=18.78 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=29.4
Q ss_pred eEEEEeecC---ccHHHHHHHHHHHhhcCCcChhhHHHHHHHHHHHhh
Q 030724 62 FEVTVVGYN---HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (172)
Q Consensus 62 l~i~i~G~s---~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (172)
+.+.|+|-+ +++......|-+.+.....+ -.+.+|.+.++++.
T Consensus 68 lhV~I~a~~~~~e~~~~A~~~I~~ll~~~~~~--~~~~~k~~ql~~la 113 (120)
T cd02395 68 LHVLITAETPPEEALAKAVEAIEELLKPAIEG--GNDELKREQLRELA 113 (120)
T ss_pred cEEEEEeCCcHHHHHHHHHHHHHHHhccCCCc--cchHHHHHHHHHHH
Confidence 788888888 67777777777666644333 45666667766654
No 105
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=21.59 E-value=1.1e+02 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.6
Q ss_pred EeeeCCeeEEEEeecCccHHHHHHHHH
Q 030724 55 INHTESGFEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 55 ~~~~~~gl~i~i~G~s~k~~~ll~~i~ 81 (172)
++.+.+.+.+.+.|-.+|+..+++.+-
T Consensus 113 vdv~~~~~~ie~tG~~~ki~a~~~~l~ 139 (174)
T CHL00100 113 VDLSEESLILEVTGDPGKIVAIEQLLE 139 (174)
T ss_pred EEecCCEEEEEEcCCHHHHHHHHHHhh
Confidence 355677899999999999888876653
No 106
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=21.18 E-value=94 Score=17.87 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=23.0
Q ss_pred EEEEeecCccHHHHHHHHHHHhhcCC-----cChhhHHHHHHH
Q 030724 63 EVTVVGYNHKLRILLETIFQKIAQFK-----VKPDRFSVIKEM 100 (172)
Q Consensus 63 ~i~i~G~s~k~~~ll~~i~~~l~~~~-----~~~~~F~~~k~~ 100 (172)
.+.+ ||++.+=.+++.+=..-.++. +.=++++.+.++
T Consensus 2 ~v~i-gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L~~~ 43 (55)
T PF07443_consen 2 EVDI-GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYSTLMKK 43 (55)
T ss_pred eeec-cCCHHHHHHHHcCcccccCccceeeeeeHHHHHHHHHH
Confidence 4566 898887777777666555543 445666655433
No 107
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=21.15 E-value=1.6e+02 Score=17.29 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=20.1
Q ss_pred hCCCCCHHHHHHHHHHHh---cchheeEE
Q 030724 138 VLPHLEAEDLAKFVPMML---SRTFLECY 163 (172)
Q Consensus 138 ~L~~it~ed~~~f~~~~~---~~~~~~~l 163 (172)
-+.+++-+|+.+|...++ .+.+++++
T Consensus 12 Gvd~lsT~dI~~y~~~y~~~~~~~~IEWI 40 (62)
T PF10309_consen 12 GVDELSTDDIKAYFSEYFDEEGPFRIEWI 40 (62)
T ss_pred cCCCCCHHHHHHHHHHhcccCCCceEEEe
Confidence 357789999999999985 45677764
No 108
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=20.73 E-value=1.1e+02 Score=21.78 Aligned_cols=26 Identities=8% Similarity=0.373 Sum_probs=21.5
Q ss_pred EeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 55 INHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 55 ~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
++.+...+.+.+.|-++|++.++..+
T Consensus 115 vDvs~~~~~~eltG~~~ki~afi~~l 140 (163)
T COG0440 115 VDVSPESLTIELTGDEEKIEAFIRLL 140 (163)
T ss_pred EecCcceEEEEEeCChHHHHHHHHHh
Confidence 34567889999999999988887765
No 109
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.69 E-value=1.7e+02 Score=19.50 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCCcChhhHHHHHHHHH
Q 030724 75 ILLETIFQKIAQFKVKPDRFSVIKEMVT 102 (172)
Q Consensus 75 ~ll~~i~~~l~~~~~~~~~F~~~k~~~~ 102 (172)
...+.+-+....-++++++|++.++.+.
T Consensus 89 RA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 89 RAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 3455555555556677888877776654
No 110
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.56 E-value=3.4e+02 Score=24.33 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC
Q 030724 31 FTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK 88 (172)
Q Consensus 31 ~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~ 88 (172)
+...+...|+...-+|..||.+.+++..++.-.|++.|..+-++..+...+..+..+.
T Consensus 469 ~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~ 526 (696)
T TIGR02110 469 LALALQRQLRPLLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAA 526 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCC
Confidence 5556777888888888889999999998888899999999999999999999998873
No 111
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=2.4e+02 Score=17.82 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=26.6
Q ss_pred CccHHHHHHHHHHHhhcCCcChhhHHHHHHHHHHH
Q 030724 70 NHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKE 104 (172)
Q Consensus 70 s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~ 104 (172)
-+.++.+++.|....-.+.++++.....+.+...+
T Consensus 54 lEeLadllEvi~~ia~a~gfske~l~~~R~~Kk~e 88 (95)
T COG4997 54 LEELADLLEVISRIAEARGFSKENLEALRLQKKLE 88 (95)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35778888888888888888888888877665544
No 112
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=20.12 E-value=2.7e+02 Score=18.33 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCc-----ChhhHHHHHHHHHHHhhhcccCChHHH
Q 030724 76 LLETIFQKIAQFKV-----KPDRFSVIKEMVTKEYHNNKFLQPFQL 116 (172)
Q Consensus 76 ll~~i~~~l~~~~~-----~~~~F~~~k~~~~~~~~n~~~~~p~~~ 116 (172)
+|+.+-+.|..... +++.+..+|..+.+.|..+....|..+
T Consensus 37 ILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~S~p~~e 82 (105)
T PF03206_consen 37 ILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVTSTPLEE 82 (105)
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 56666666655432 357799999999999999998877543
No 113
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=20.11 E-value=1.3e+02 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=21.5
Q ss_pred eeeCCeeEEEEeecCccHHHHHHHHH
Q 030724 56 NHTESGFEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 56 ~~~~~gl~i~i~G~s~k~~~ll~~i~ 81 (172)
+.+.+.+.+.+.|-.+|+..+++.+-
T Consensus 113 dv~~~~~~ie~tG~~~ki~~~~~~l~ 138 (157)
T TIGR00119 113 DVSPDSYTVEVTGDSDKIDAFLELLR 138 (157)
T ss_pred EecCCEEEEEEcCCHHHHHHHHHHhh
Confidence 45678899999999999888877653
No 114
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.11 E-value=3.9e+02 Score=20.08 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-----------~---~ 90 (172)
..+..|+...+.+.+.... .+|+.+++.|--+.+|.-+...++.+...+ + .
T Consensus 66 ~~Lm~l~~~~l~~~~~~~~---------------~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~g 130 (221)
T cd00475 66 DFLMELFRDVLRRILKELE---------------KLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGG 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCC
Confidence 6677777777766554421 358888999988888887777776664432 1 2
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccC
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 127 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~ 127 (172)
.++...+..++.+..++.... |-....+.+...|..
T Consensus 131 r~eI~~a~~~~~~~~~~~~~~-~~~i~~~~~~~~L~~ 166 (221)
T cd00475 131 RQEIIHAVREIAEKVKAGKLT-PEDIDESTLNKHLYT 166 (221)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-hHhCCHHHHHHhhCc
Confidence 455555555666555444433 545555555555553
No 115
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=20.07 E-value=44 Score=29.29 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=29.6
Q ss_pred HHHHHhhhhhhhccchhcceEEEeeeC-CeeEEEEeecCccHH
Q 030724 33 RLLLDYLNEYAYYAQVAGLDYGINHTE-SGFEVTVVGYNHKLR 74 (172)
Q Consensus 33 ~ll~~~l~e~~y~a~~agl~~~~~~~~-~gl~i~i~G~s~k~~ 74 (172)
.++...+-+.+|.|+.||....+-..+ +.+.=.+.|.||++.
T Consensus 543 sLvD~~iI~aLY~AS~AGV~IdLIVRGiCcLrPgv~glSeNIr 585 (696)
T COG0855 543 SLVDPQIIDALYRASQAGVQIDLIVRGICCLRPGVPGLSENIR 585 (696)
T ss_pred hccCHHHHHHHHHHhhcCCEEEEEEeeeeecCCCCCCcCcceE
Confidence 344556667899999999998876532 345556778888764
Done!