Query 030724
Match_columns 172
No_of_seqs 107 out of 834
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 99.9 1.8E-23 6.1E-28 182.3 19.1 169 2-171 519-688 (939)
2 3cww_A Insulysin, insulin-degr 99.9 2E-22 6.7E-27 176.7 20.2 171 1-171 537-707 (990)
3 3cx5_A Cytochrome B-C1 complex 99.7 1.8E-16 6.1E-21 126.7 12.3 164 4-170 20-190 (431)
4 3gwb_A Peptidase M16 inactive 99.6 1.5E-15 5.1E-20 121.6 12.7 165 4-170 33-207 (434)
5 1pp9_B Ubiquinol-cytochrome C 99.6 1.6E-15 5.6E-20 121.5 12.3 165 4-170 42-213 (439)
6 3amj_B Zinc peptidase inactive 99.6 2.3E-15 7.9E-20 120.2 9.1 166 4-170 23-200 (424)
7 3d3y_A Uncharacterized protein 99.6 1.6E-14 5.5E-19 115.1 13.0 163 4-170 22-211 (425)
8 1hr6_A Alpha-MPP, mitochondria 99.6 1.2E-14 4.2E-19 118.1 11.5 165 4-170 24-196 (475)
9 3cx5_B Cytochrome B-C1 complex 99.5 2E-13 6.8E-18 106.6 11.4 164 3-170 9-178 (352)
10 3eoq_A Putative zinc protease; 99.5 2E-13 6.8E-18 108.7 11.4 166 4-171 21-194 (406)
11 3hdi_A Processing protease; CA 99.5 4.6E-13 1.6E-17 106.9 11.9 165 4-169 21-193 (421)
12 3ami_A Zinc peptidase; alpha/b 99.4 9.3E-13 3.2E-17 106.0 11.7 169 3-171 25-201 (445)
13 1pp9_A Ubiquinol-cytochrome C 99.4 1.8E-12 6.2E-17 104.4 10.6 166 4-170 32-205 (446)
14 1hr6_B Beta-MPP, mitochondrial 99.4 3.9E-12 1.3E-16 102.1 11.5 165 5-170 27-199 (443)
15 2fge_A Atprep2;, zinc metallop 99.3 6.2E-12 2.1E-16 110.5 8.5 165 2-169 570-767 (995)
16 3go9_A Insulinase family prote 99.2 3E-11 1E-15 98.9 7.6 163 3-170 46-222 (492)
17 1q2l_A Protease III; hydrolase 99.1 7.7E-10 2.6E-14 96.6 11.2 166 4-170 40-218 (939)
18 3ih6_A Putative zinc protease; 99.0 4.3E-08 1.5E-12 70.3 15.8 158 4-167 22-193 (197)
19 3cww_A Insulysin, insulin-degr 98.9 6.7E-09 2.3E-13 91.2 9.9 167 3-170 53-235 (990)
20 3gwb_A Peptidase M16 inactive 98.7 2.1E-07 7.2E-12 74.1 12.6 109 61-170 311-423 (434)
21 3hdi_A Processing protease; CA 98.7 1.1E-06 3.6E-11 69.9 15.8 163 4-170 232-406 (421)
22 3cx5_A Cytochrome B-C1 complex 98.7 1.1E-06 3.7E-11 69.8 15.4 107 62-169 302-414 (431)
23 3eoq_A Putative zinc protease; 98.7 4.8E-07 1.7E-11 71.7 13.2 161 5-169 234-405 (406)
24 3amj_B Zinc peptidase inactive 98.6 6E-07 2.1E-11 71.3 13.5 162 5-169 241-415 (424)
25 1pp9_B Ubiquinol-cytochrome C 98.6 2.1E-06 7.2E-11 68.4 16.0 161 5-169 251-431 (439)
26 1hr6_B Beta-MPP, mitochondrial 98.6 7.9E-06 2.7E-10 65.2 17.7 107 62-169 317-429 (443)
27 1hr6_A Alpha-MPP, mitochondria 98.5 5.1E-06 1.8E-10 67.2 15.8 106 62-168 316-437 (475)
28 1pp9_A Ubiquinol-cytochrome C 98.5 7.2E-06 2.5E-10 65.7 16.1 107 62-169 320-429 (446)
29 3ami_A Zinc peptidase; alpha/b 98.5 3.2E-06 1.1E-10 67.7 13.5 161 6-167 244-421 (445)
30 3s5m_A Falcilysin; M16 metallo 98.4 7.8E-07 2.7E-11 79.6 9.6 159 8-171 112-312 (1193)
31 3d3y_A Uncharacterized protein 98.4 7.8E-06 2.7E-10 64.6 14.4 159 5-167 253-421 (425)
32 2fge_A Atprep2;, zinc metallop 98.3 1.1E-06 3.8E-11 77.3 7.7 157 9-170 61-245 (995)
33 3go9_A Insulinase family prote 98.2 0.00011 3.7E-09 60.0 17.0 162 5-167 265-446 (492)
34 3s5m_A Falcilysin; M16 metallo 97.5 0.00016 5.6E-09 64.8 7.1 162 5-169 738-938 (1193)
35 1vq8_E 50S ribosomal protein L 62.6 25 0.00087 24.4 6.2 52 20-71 55-113 (178)
36 2fhm_A Probable acylphosphatas 61.3 11 0.00037 23.0 3.7 38 45-82 24-62 (91)
37 1ulr_A Putative acylphosphatas 59.7 11 0.00038 22.8 3.6 37 45-81 24-61 (88)
38 1urr_A CG18505 protein; acylph 56.1 14 0.00048 23.0 3.7 37 45-81 33-70 (102)
39 2bjd_A Acylphosphatase; hypert 55.5 14 0.00048 23.0 3.6 37 45-81 36-73 (101)
40 2vh7_A Acylphosphatase-1; hydr 55.5 14 0.00049 22.9 3.6 37 45-81 30-67 (99)
41 1w2i_A Acylphosphatase; hydrol 54.1 12 0.00041 22.8 3.0 36 45-80 26-62 (91)
42 2gv1_A Probable acylphosphatas 53.5 12 0.0004 22.9 2.9 36 45-80 26-62 (92)
43 1eoq_A GAG polyprotein capsid 53.4 37 0.0013 21.0 5.3 64 91-155 8-73 (96)
44 3cx5_B Cytochrome B-C1 complex 52.4 13 0.00044 27.9 3.7 81 24-111 233-315 (352)
45 1rl6_A Protein (ribosomal prot 48.6 64 0.0022 22.3 6.7 51 20-71 56-110 (177)
46 3bv8_A Tetrahydrodipicolinate 48.2 30 0.001 21.0 4.1 30 141-170 3-32 (87)
47 3j21_F 50S ribosomal protein L 47.8 62 0.0021 22.6 6.2 53 19-71 59-118 (184)
48 1zav_U 50S ribosomal protein L 46.1 9.6 0.00033 18.3 1.3 24 131-154 2-25 (30)
49 3trg_A Acylphosphatase; fatty 43.8 22 0.00075 22.0 3.1 37 45-81 34-71 (98)
50 2lxf_A Uncharacterized protein 41.4 30 0.001 22.4 3.6 37 45-81 56-93 (121)
51 1aps_A Acylphosphatase; hydrol 40.4 15 0.00051 22.7 1.9 36 45-80 29-65 (98)
52 1dd4_C 50S ribosomal protein L 35.8 41 0.0014 17.2 2.8 30 132-161 3-32 (40)
53 2kl8_A OR15; structural genomi 32.4 72 0.0024 18.1 6.3 31 54-84 34-64 (85)
54 2ky4_A Phycobilisome linker po 32.4 78 0.0027 21.3 4.5 77 81-157 45-122 (149)
55 1nkw_E 50S ribosomal protein L 32.1 83 0.0028 22.5 4.9 52 20-72 84-139 (212)
56 3v2d_H 50S ribosomal protein L 31.9 1.3E+02 0.0043 20.8 6.6 52 19-71 56-111 (180)
57 3nph_B Phycobilisome 32.1 kDa 31.0 95 0.0032 20.8 4.7 77 81-157 42-119 (148)
58 1use_A VAsp, vasodilator-stimu 29.7 57 0.0019 17.1 2.7 23 89-111 4-26 (45)
59 3ohw_B Phycobilisome LCM core- 29.7 1.1E+02 0.0036 20.6 4.8 79 79-157 52-131 (148)
60 3pru_C Phycobilisome 32.1 kDa 28.4 85 0.0029 21.2 4.2 75 81-156 47-123 (154)
61 2zrr_A Mundticin KS immunity p 26.8 1.3E+02 0.0044 19.3 6.6 63 66-128 27-93 (118)
62 2dk8_A DNA-directed RNA polyme 26.2 1.1E+02 0.0037 18.2 4.1 41 127-167 27-67 (81)
63 4h8e_A Undecaprenyl pyrophosph 25.0 1.5E+02 0.005 21.8 5.3 87 25-127 90-190 (256)
64 3osj_A Phycobilisome LCM core- 24.7 1.6E+02 0.0055 19.7 6.1 79 79-157 51-130 (147)
65 2p1h_A APAF-1, apoptotic prote 24.0 57 0.0019 19.5 2.6 60 79-148 26-86 (94)
66 1r9f_A Core protein P19; prote 22.6 1.6E+02 0.0053 18.8 4.5 31 50-82 87-117 (136)
67 2f1f_A Acetolactate synthase i 21.9 80 0.0027 21.5 3.2 26 55-80 114-139 (164)
68 1rpu_A 19 kDa protein; RNAI, p 20.8 1.8E+02 0.0063 19.2 4.5 32 50-83 109-140 (172)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.91 E-value=1.8e-23 Score=182.33 Aligned_cols=169 Identities=18% Similarity=0.288 Sum_probs=161.4
Q ss_pred CCCc-eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 2 FSTP-KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 2 F~~P-k~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
|++| ++.|.+.+.+|....++++.+++.|+..++.+.+.+..|.+.++|++++++. .+|+.+.++|++++++.+++.+
T Consensus 519 f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll 597 (939)
T 1q2l_A 519 FASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQAL 597 (939)
T ss_dssp CTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHH
T ss_pred cCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHH
Confidence 6776 9999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchhe
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (172)
.+.+.++.+++++|+++|++++++++|...++|+.++.+.+..+++.+.|+..+.++.|+++|++|+.+|+++++++.++
T Consensus 598 ~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~ 677 (939)
T 1q2l_A 598 LEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP 677 (939)
T ss_dssp HHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999997767999999999999998889888999999999999999999999999999
Q ss_pred eEEeecCCCCC
Q 030724 161 ECYIAGPSVSI 171 (172)
Q Consensus 161 ~~lv~GN~~~~ 171 (172)
+++|+||++++
T Consensus 678 ~~~vvGn~~~~ 688 (939)
T 1q2l_A 678 EFMVIGNMTEA 688 (939)
T ss_dssp EEEEEESCCHH
T ss_pred EEEEEcCCCHH
Confidence 99999999863
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.90 E-value=2e-22 Score=176.68 Aligned_cols=171 Identities=36% Similarity=0.577 Sum_probs=163.2
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 1 ~F~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
+|++|++.+.+.+.+|....++++.+++.|++.++.+.+.+..|.+..+|++++++.+.+|+.++++|++++++.+++.+
T Consensus 537 ~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll 616 (990)
T 3cww_A 537 KFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKI 616 (990)
T ss_dssp SCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHH
T ss_pred ccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHH
Confidence 37899999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchhe
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (172)
.+.+.++.+++++|+++|+++.++++|....+|+.+|...+..+++++.|..++.++.|+++|.+|+.+|+++++++.++
T Consensus 617 ~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~ 696 (990)
T 3cww_A 617 IEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHI 696 (990)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999999866999999999999998889988899999999999999999999999999
Q ss_pred eEEeecCCCCC
Q 030724 161 ECYIAGPSVSI 171 (172)
Q Consensus 161 ~~lv~GN~~~~ 171 (172)
+++|+||++++
T Consensus 697 ~~~v~Gn~~~~ 707 (990)
T 3cww_A 697 EALLHGNITKQ 707 (990)
T ss_dssp EEEEEESCCHH
T ss_pred EEEEEcCCCHH
Confidence 99999999853
No 3
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.69 E-value=1.8e-16 Score=126.74 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=144.0
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQK 83 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~ 83 (172)
.|++.+.+.+..+...+++...+++.++..++...... |.+...|.+++...+.+++.+.+++++++++.++..+.+.
T Consensus 20 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~ 97 (431)
T 3cx5_A 20 AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQS 97 (431)
T ss_dssp CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHH
Confidence 48899999999999888888899999999988766443 5678889999999999999999999999999999999999
Q ss_pred hhcCC---cChhhHHHHHHHHHHHhhhcccCCh-HHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 030724 84 IAQFK---VKPDRFSVIKEMVTKEYHNNKFLQP-FQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (172)
Q Consensus 84 l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p-~~~a~~~~~~~l~~~-~--~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (172)
+.++. +++++|++.|+.+.+++++...+ | ...+.+.+...++++ + ++.....+.|+.+|.+|+.+|+++++.
T Consensus 98 ~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~ 176 (431)
T 3cx5_A 98 FIQQKANLLSSSNFEATKKSVLKQVQDFEDN-DHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFL 176 (431)
T ss_dssp HHTCSTTTTCHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSC
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCC
Confidence 99999 99999999999999999986555 9 999999888877753 2 334445677889999999999999999
Q ss_pred chheeEEeecCCCC
Q 030724 157 RTFLECYIAGPSVS 170 (172)
Q Consensus 157 ~~~~~~lv~GN~~~ 170 (172)
+.++.++|+||++.
T Consensus 177 ~~~~~l~v~G~~~~ 190 (431)
T 3cx5_A 177 NSNAVVVGTGNIKH 190 (431)
T ss_dssp GGGEEEEEEESCCH
T ss_pred CCcEEEEEEcCCCH
Confidence 99999999999985
No 4
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.65 E-value=1.5e-15 Score=121.56 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=139.8
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh-----hhccchhcceEEEeeeCCeeEEEEeecCcc--HHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY-----AYYAQVAGLDYGINHTESGFEVTVVGYNHK--LRIL 76 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~-----~y~a~~agl~~~~~~~~~gl~i~i~G~s~k--~~~l 76 (172)
.|++.+.+.+..+...+ +...+++.++..++....... .......|.+++...+.+++.+.++|++++ ++.+
T Consensus 33 ~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~ 111 (434)
T 3gwb_A 33 LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPA 111 (434)
T ss_dssp SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHH
T ss_pred CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHH
Confidence 59999999999998877 777888999988886655332 222223388888888889999999999999 9999
Q ss_pred HHHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHH
Q 030724 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPM 153 (172)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it~ed~~~f~~~ 153 (172)
++.+.+.+.++.+++++|++.|+.+.+++++... +|...+.+.+...++++ +|. .....+.|+++|.+++++|+++
T Consensus 112 l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~ 190 (434)
T 3gwb_A 112 LKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQ-NPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAK 190 (434)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999855 49999999888888753 333 2335689999999999999999
Q ss_pred HhcchheeEEeecCCCC
Q 030724 154 MLSRTFLECYIAGPSVS 170 (172)
Q Consensus 154 ~~~~~~~~~lv~GN~~~ 170 (172)
++.+.++.++|+||++.
T Consensus 191 ~y~~~~~~l~v~G~~~~ 207 (434)
T 3gwb_A 191 AYAAGNVVIALVGDLSR 207 (434)
T ss_dssp HSCGGGEEEEEEESCCH
T ss_pred hcCcCCeEEEEEcCCCH
Confidence 99999999999999985
No 5
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.64 E-value=1.6e-15 Score=121.52 Aligned_cols=165 Identities=7% Similarity=0.020 Sum_probs=141.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
.|++.+.+.+..+...+++...+++.++..++..... +.....+..|.+++...+.+++.+.+++++++++.+++
T Consensus 42 ~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 121 (439)
T 1pp9_B 42 APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILME 121 (439)
T ss_dssp CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHH
Confidence 5899999999999888887888899999888754432 34445556688999988889999999999999999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCC--CCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~--~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (172)
.+.+.+.++.+++++|++.|+.+.+++++...+ |...+.+.+...+++++ ++.....+.|+++|.+++++|+++++.
T Consensus 122 ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~ 200 (439)
T 1pp9_B 122 FLLNVTTAPEFRRWEVAALQPQLRIDKAVALQN-PQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 200 (439)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHBSSGGGSCSSCCGGGTTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCCCCCCccCCHHHHhhcCHHHHHHHHHHhCC
Confidence 999999999999999999999999999986555 99999998888777532 334456788999999999999999999
Q ss_pred chheeEEeecCCCC
Q 030724 157 RTFLECYIAGPSVS 170 (172)
Q Consensus 157 ~~~~~~lv~GN~~~ 170 (172)
+.++.++|+|| +.
T Consensus 201 ~~~~~l~v~G~-~~ 213 (439)
T 1pp9_B 201 SARMALIGLGV-SH 213 (439)
T ss_dssp GGGEEEEEESS-CH
T ss_pred CCceEEEEeCC-CH
Confidence 99999999999 64
No 6
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.60 E-value=2.3e-15 Score=120.21 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=137.6
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-------hhhhccch--hcceEEEeeeCCeeEEEEeecCccH-
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-------EYAYYAQV--AGLDYGINHTESGFEVTVVGYNHKL- 73 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-------e~~y~a~~--agl~~~~~~~~~gl~i~i~G~s~k~- 73 (172)
.|++.+.+.+..+...+++...+++.++..++..... ...+...+ .|.+++...+.++..+.++++++++
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~ 102 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAE 102 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHH
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccC
Confidence 5899999999999888888888999999988866333 22233333 3778888888889999999999998
Q ss_pred -HHHHHHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCCHHHHHhhCCCCCHHHHHHHH
Q 030724 74 -RILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWPWMEELEVLPHLEAEDLAKFV 151 (172)
Q Consensus 74 -~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~~~~~l~~L~~it~ed~~~f~ 151 (172)
+.+++.+.+.+.++.+++++|++.|+.+.+++++...+ |...+.+.+...++++ +|......+.|+++|.+++.+|+
T Consensus 103 l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~ 181 (424)
T 3amj_B 103 RNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQ-PGSILGRRFTELAYGKHPYGHVSSVATLQKISRDQLVSFH 181 (424)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHTTSGGGCCCCHHHHHHCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHhcCCCCCCCCCCCHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999987654 9999999888877753 33211145667789999999999
Q ss_pred HHHhcchheeEEeecCCCC
Q 030724 152 PMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 152 ~~~~~~~~~~~lv~GN~~~ 170 (172)
++++.+.++.++|+||++.
T Consensus 182 ~~~y~~~~~~l~v~Gd~~~ 200 (424)
T 3amj_B 182 RTHYVARTAVVTLVGDITR 200 (424)
T ss_dssp HHHSCTTSCEEEEEESCCH
T ss_pred HHhcCCCceEEEEEeCCCH
Confidence 9999999999999999985
No 7
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.59 E-value=1.6e-14 Score=115.06 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=133.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhccchh---cceEEEeeeCCe----eEEEEeecCc-
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY----AYYAQVA---GLDYGINHTESG----FEVTVVGYNH- 71 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~----~y~a~~a---gl~~~~~~~~~g----l~i~i~G~s~- 71 (172)
.|++.+.+.+..+...++ ..++.++..++.....+. .+...++ |.+++...+.++ +.+.++++++
T Consensus 22 ~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~ 98 (425)
T 3d3y_A 22 YKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDH 98 (425)
T ss_dssp CSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGG
T ss_pred cceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChh
Confidence 489999999998876544 477888888888766443 2444444 777777665544 8999999998
Q ss_pred ------cHHHHHHHHHHHhhcCC-----cChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc-C-CCCC--HHHHH
Q 030724 72 ------KLRILLETIFQKIAQFK-----VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-D-QTWP--WMEEL 136 (172)
Q Consensus 72 ------k~~~ll~~i~~~l~~~~-----~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~-~~~~--~~~~l 136 (172)
+++.+++.+.+.+.++. +++++|++.|+.+.+++++...+ |...+.+.+...++ + +++. .....
T Consensus 99 ~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 177 (425)
T 3d3y_A 99 YLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVED-KQTYASLALQSVYFNQSEDQKIPSFGTV 177 (425)
T ss_dssp GCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHTTTCTTTTSCTTCCH
T ss_pred hccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhccCCCCccCCCCCCH
Confidence 69999999999999999 99999999999999999986655 99999998888887 4 3333 33456
Q ss_pred hhCCCCCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 137 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 137 ~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
+.|+++|.+++.+|+++++.+.++.++|+||++.
T Consensus 178 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~ 211 (425)
T 3d3y_A 178 AALAEETAASLAAYYQKMLAEDQVDIFVLGDVNE 211 (425)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCH
Confidence 7778899999999999999999999999999985
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.58 E-value=1.2e-14 Score=118.12 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=142.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l-----~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
.|++.+.+.+..+...+++...+++.++..++-... .+.....+..|.+++...+.+++.+.+++++++++.++.
T Consensus 24 ~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 103 (475)
T 1hr6_A 24 GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQ 103 (475)
T ss_dssp CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHH
Confidence 488999999999988888888899999988876543 345555667799999988889999999999999999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~--~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
.+.+.+.++.+++++|++.|+.+++++++...+ |...+.+.+...++++ . ++.....+.|+.+|.+++.+|+++++
T Consensus 104 ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y 182 (475)
T 1hr6_A 104 LMSETVRFPKITEQELQEQKLSAEYEIDEVWMK-PELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFY 182 (475)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhC
Confidence 999999999999999999999999999996554 9999999998888864 2 23334568889999999999999999
Q ss_pred cchheeEEeecCCCC
Q 030724 156 SRTFLECYIAGPSVS 170 (172)
Q Consensus 156 ~~~~~~~lv~GN~~~ 170 (172)
.+.++.++|+| ++.
T Consensus 183 ~p~n~~l~v~G-~d~ 196 (475)
T 1hr6_A 183 TPENTVAAFVG-VPH 196 (475)
T ss_dssp CGGGEEEEEES-SCH
T ss_pred CcccEEEEEeC-CCH
Confidence 99999999999 875
No 9
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.49 E-value=2e-13 Score=106.65 Aligned_cols=164 Identities=10% Similarity=0.089 Sum_probs=133.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHH
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll 77 (172)
..|.+.+.+.+..+...++ ..+++.++..++-.... +.....+..|.+++...+.+...+.+++.+++++.++
T Consensus 9 ~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l 86 (352)
T 3cx5_B 9 PTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYV 86 (352)
T ss_dssp SCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHH
Confidence 3688888888888776543 45778888777744332 2333445668888888888899999999999999999
Q ss_pred HHHHHHhhcCCcChhhHH-HHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 030724 78 ETIFQKIAQFKVKPDRFS-VIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~-~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (172)
+.+.+.+.++.+++++|+ +.|+.+..++++...+ |...+.+.+...++++++...-..+.|+++|.+|+.+|+++++.
T Consensus 87 ~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y~ 165 (352)
T 3cx5_B 87 NALADVLYKTAFKPHELTESVLPAARYDYAVAEQC-PVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYT 165 (352)
T ss_dssp HHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhCC
Confidence 999999999999999998 9999999999975555 99999888877777554443223689999999999999999999
Q ss_pred chheeEEeecCCCC
Q 030724 157 RTFLECYIAGPSVS 170 (172)
Q Consensus 157 ~~~~~~lv~GN~~~ 170 (172)
+.++.+.|+| ++.
T Consensus 166 ~~n~~l~v~G-~~~ 178 (352)
T 3cx5_B 166 KENLEVSGEN-VVE 178 (352)
T ss_dssp GGGEEEEEES-SCH
T ss_pred cCcEEEEEeC-CCH
Confidence 9999999999 875
No 10
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.49 E-value=2e-13 Score=108.72 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=139.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
.|.+.+.+.+..+...+++...+++.++..++-.... +.....+..|.+++...+.+...+.+++.+++++..+.
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 100 (406)
T 3eoq_A 21 ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLG 100 (406)
T ss_dssp CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHH
Confidence 5889999999999888888889999999888865433 22223344588888888888999999999999999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
.+.+.+ ++.+++++|++.|..+..+++....+ |...+...+...++++ +|. .....+.|+.+|.+|+.+|+++++
T Consensus 101 ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y 178 (406)
T 3eoq_A 101 LFAKLL-RPALREEDFQTEKLVILEEIARYQDR-PGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRY 178 (406)
T ss_dssp HHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhC
Confidence 999999 99999999999999999999987665 9999999888888764 222 223456778889999999999999
Q ss_pred cchheeEEeecCCCCC
Q 030724 156 SRTFLECYIAGPSVSI 171 (172)
Q Consensus 156 ~~~~~~~lv~GN~~~~ 171 (172)
.+.++.+.|+||++.+
T Consensus 179 ~p~n~~l~v~Gd~~~~ 194 (406)
T 3eoq_A 179 LPKNMVLAATGRVDFD 194 (406)
T ss_dssp CGGGEEEEEEESCCHH
T ss_pred CccCEEEEEEcCCCHH
Confidence 9999999999999853
No 11
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.47 E-value=4.6e-13 Score=106.95 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=138.1
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
.|.+.+.+.+..+...+++...+++.++..++-..... .....+..|.+++...+.+...+.+++.+++++..+.
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 100 (421)
T 3hdi_A 21 VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAID 100 (421)
T ss_dssp CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHH
Confidence 58899999999998888888889999998887654322 2222344577888888888899999999999999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CC--CHHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~--~~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
.+.+.+.++.+++++|++.|+.+..+++....+ |...+.+.+...++++ ++ +.....+.|+.+|.+++.+|+++++
T Consensus 101 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y 179 (421)
T 3hdi_A 101 TLSDMFFHSTFQKEELEKERKVVFEEIKMVDDT-PDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFY 179 (421)
T ss_dssp HHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999986655 9999999888888764 22 2223456778899999999999999
Q ss_pred cchheeEEeecCCC
Q 030724 156 SRTFLECYIAGPSV 169 (172)
Q Consensus 156 ~~~~~~~lv~GN~~ 169 (172)
.+.++.+.|+||++
T Consensus 180 ~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 180 TGDYVVISVAGNVH 193 (421)
T ss_dssp STTTEEEEEEESCC
T ss_pred CcccEEEEEEeCCC
Confidence 99999999999997
No 12
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.43 E-value=9.3e-13 Score=106.01 Aligned_cols=169 Identities=8% Similarity=0.047 Sum_probs=134.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHH
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll 77 (172)
..|.+.+.+.+..+...+++...+++.++..++-.... +.....+..|.+++...+.+...+.+++.+++++..+
T Consensus 25 ~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l 104 (445)
T 3ami_A 25 RAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVM 104 (445)
T ss_dssp TSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHH
Confidence 46889999999998877777777888888777754332 2222233356778877777788888889999999999
Q ss_pred HHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHH
Q 030724 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMM 154 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~ 154 (172)
..+.+.+.++.+++++|++.|..+..+++....++|...+.+.+...++++ ++. .....+.|+.+|.+++++|++++
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~ 184 (445)
T 3ami_A 105 GLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRW 184 (445)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHh
Confidence 999999999999999999999999999994444449988888888877753 232 22345677789999999999999
Q ss_pred hcchheeEEeecCCCCC
Q 030724 155 LSRTFLECYIAGPSVSI 171 (172)
Q Consensus 155 ~~~~~~~~lv~GN~~~~ 171 (172)
+.+.++.+.|+||++.+
T Consensus 185 y~p~n~~l~vvGd~d~~ 201 (445)
T 3ami_A 185 YGPNNATVVVVGDVEHE 201 (445)
T ss_dssp CSGGGEEEEEEESCCHH
T ss_pred CCccceEEEEEcCCCHH
Confidence 99999999999999853
No 13
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.39 E-value=1.8e-12 Score=104.36 Aligned_cols=166 Identities=10% Similarity=0.089 Sum_probs=134.0
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~ 78 (172)
.|.+.+.+.+..+...+++...+++.++..++-.... +.....+..|.+++...+.++..+.+++.+++++..+.
T Consensus 32 ~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 111 (446)
T 1pp9_A 32 QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVE 111 (446)
T ss_dssp CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHH
Confidence 4788888999988887777778888888888754332 12222233477888888888899999999999999999
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHHh
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMML 155 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~~ 155 (172)
.+.+.+.++.+++++|++.|+.+..+++....+ |...+.+.+...++++ +|. .....+.|+++|.+++.+|+++++
T Consensus 112 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y 190 (446)
T 1pp9_A 112 LLADIVQNCSLEDSQIEKERDVILQELQENDTS-MRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHY 190 (446)
T ss_dssp HHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhcc
Confidence 999999999999999999999999999976665 9888998888777753 232 222355667789999999999999
Q ss_pred cchheeEEeecCCCC
Q 030724 156 SRTFLECYIAGPSVS 170 (172)
Q Consensus 156 ~~~~~~~lv~GN~~~ 170 (172)
.+.++.+.|+||++.
T Consensus 191 ~p~n~~l~v~Gd~~~ 205 (446)
T 1pp9_A 191 KAPRMVLAAAGGLEH 205 (446)
T ss_dssp CGGGEEEEEEESCCH
T ss_pred CCCCEEEEEEcCCCH
Confidence 999999999999975
No 14
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.37 E-value=3.9e-12 Score=102.06 Aligned_cols=165 Identities=7% Similarity=0.048 Sum_probs=131.8
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHH
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~ 79 (172)
|.+.+.+.+..+...++.....++.++..++-.... +..-.....|.+++...+.....+.+++.+++++..+..
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~l 106 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHH
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHH
Confidence 477888899988877776777888888777643322 121122234777888777788999999999999999999
Q ss_pred HHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHHhc
Q 030724 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMMLS 156 (172)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~~~ 156 (172)
+.+.+.++.+++++|++.|+.+..+++....+ |...+.+.+...++++ ++. .....+.|+++|.+++.+|+++++.
T Consensus 107 l~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~ 185 (443)
T 1hr6_B 107 LSDILTKSVLDNSAIERERDVIIRESEEVDKM-YDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYK 185 (443)
T ss_dssp HHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999986665 9999998888777753 232 1123456677899999999999999
Q ss_pred chheeEEeecCCCC
Q 030724 157 RTFLECYIAGPSVS 170 (172)
Q Consensus 157 ~~~~~~lv~GN~~~ 170 (172)
+.++.+.|+||++.
T Consensus 186 ~~n~~l~v~Gd~~~ 199 (443)
T 1hr6_B 186 GDRMVLAGAGAVDH 199 (443)
T ss_dssp GGGEEEEEEESCCH
T ss_pred CCCEEEEEEcCCCH
Confidence 99999999999985
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.29 E-value=6.2e-12 Score=110.47 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=130.3
Q ss_pred CCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------cchhcceE-EE--eeeC-----CeeEEE
Q 030724 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDY-GI--NHTE-----SGFEVT 65 (172)
Q Consensus 2 F~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~-~l~e~~y~-------a~~agl~~-~~--~~~~-----~gl~i~ 65 (172)
|..|.+++.+.+..+.. +++...+..+++.++.+ .+....|. +..+|+++ ++ +.+. .++.++
T Consensus 570 ~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~ 647 (995)
T 2fge_A 570 FTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVR 647 (995)
T ss_dssp CCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEE
Confidence 56788888888877554 55667788899888887 55444332 24446677 44 4434 689999
Q ss_pred EeecCccHHHHHHHHHHHhhcCCcChh-hHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCC------------H
Q 030724 66 VVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP------------W 132 (172)
Q Consensus 66 i~G~s~k~~~ll~~i~~~l~~~~~~~~-~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~------------~ 132 (172)
+++++++++.+++.+.+.+.++.++++ +|+++|++++.++++...++|+..|...+..++.+..+- .
T Consensus 648 ~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~ 727 (995)
T 2fge_A 648 GKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFL 727 (995)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHH
T ss_pred EEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHH
Confidence 999999999999999999999999998 999999999999999987769999999887766543211 1
Q ss_pred HHHH----hhCCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 133 MEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 133 ~~~l----~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
.++. +.++.+ .+++.+|+++++++.+++++|+||++
T Consensus 728 ~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~ 767 (995)
T 2fge_A 728 HTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGK 767 (995)
T ss_dssp HHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHH
T ss_pred HHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHH
Confidence 1222 457788 99999999999999999999999986
No 16
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.19 E-value=3e-11 Score=98.87 Aligned_cols=163 Identities=12% Similarity=0.004 Sum_probs=122.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhh---------ccchhcceEEEeeeCCeeEEEEeecC---
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAY---------YAQVAGLDYGINHTESGFEVTVVGYN--- 70 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y---------~a~~agl~~~~~~~~~gl~i~i~G~s--- 70 (172)
..|++.+.+.+..+...+++...+++.++..++-+....... .....|-+++...+.+...+.++..+
T Consensus 46 ~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~ 125 (492)
T 3go9_A 46 PSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRP 125 (492)
T ss_dssp TTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCH
T ss_pred CCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcH
Confidence 457899999999999988888999999999999765533211 11224556666666777888888888
Q ss_pred ccHHHHHHHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHH--HHHhccCCCCCHHHHHhhCCCCCHHHHH
Q 030724 71 HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY--CSLILQDQTWPWMEELEVLPHLEAEDLA 148 (172)
Q Consensus 71 ~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~--~~~~l~~~~~~~~~~l~~L~~it~ed~~ 148 (172)
++++..+..+.+.+.++.+++++|++.|....+.++....+ |...+... .......+.+. .+.++.+|.+|++
T Consensus 126 ~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~i~~it~~dL~ 200 (492)
T 3go9_A 126 DLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQN-IQEPWWRYRLKGSSLIGHDPG----QPVTQPVDVEKLK 200 (492)
T ss_dssp HHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSC-TTCHHHHHHTTTSTTTTCCTT----CCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHhccCCcccCCCc----hhhhhcCCHHHHH
Confidence 67999999999999999999999999888666666554443 54333221 11111112222 2578999999999
Q ss_pred HHHHHHhcchheeEEeecCCCC
Q 030724 149 KFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 149 ~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
+|+++++.+.++.+.|+||++.
T Consensus 201 ~fy~~~Y~p~n~~l~vvGdvd~ 222 (492)
T 3go9_A 201 QFYQQWYTPDAMTLYVVGNVDS 222 (492)
T ss_dssp HHHHHHCCGGGEEEEEEESCCH
T ss_pred HHHHHhcCcCceEEEEEcCCCH
Confidence 9999999999999999999985
No 17
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.07 E-value=7.7e-10 Score=96.56 Aligned_cols=166 Identities=11% Similarity=0.012 Sum_probs=135.8
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~------e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll 77 (172)
.|++.+.+.+..+...+.....+++.++..++-.... +..-..+..|.+.+...+.+...+.+...+++++..+
T Consensus 40 ~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L 119 (939)
T 1q2l_A 40 AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAV 119 (939)
T ss_dssp CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHH
T ss_pred CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHHHHHHHH
Confidence 5788999999999888888888999998887754432 2222234458888888888888888888999999999
Q ss_pred HHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCC----CCHHHHHHH
Q 030724 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPH----LEAEDLAKF 150 (172)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~----it~ed~~~f 150 (172)
..+.+.+.++.+++++|++-|..+..+++....+ |...+...+..+++++ +|. .....+.|+. +|.+++++|
T Consensus 120 ~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f 198 (939)
T 1q2l_A 120 DRLADAIAEPLLDKKYAERERNAVNAELTMARTR-DGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDF 198 (939)
T ss_dssp HHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHH
Confidence 9999999999999999999999999999987665 8778888888878753 232 2234566677 999999999
Q ss_pred HHHHhcchheeEEeecCCCC
Q 030724 151 VPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 151 ~~~~~~~~~~~~lv~GN~~~ 170 (172)
+++++.+.++.+.|+||++.
T Consensus 199 ~~~~Y~p~n~~l~v~G~~~~ 218 (939)
T 1q2l_A 199 HEKYYSANLMKAVIYSNKPL 218 (939)
T ss_dssp HHHHCCTTTCEEEEEESSCH
T ss_pred HHhccCHhheEEEEEcCCCH
Confidence 99999999999999999975
No 18
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.99 E-value=4.3e-08 Score=70.33 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=110.0
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hhhhhhhccchhcceEEEeee-----CCe-eEEEEeecCc-c
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD----YLNEYAYYAQVAGLDYGINHT-----ESG-FEVTVVGYNH-K 72 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~----~l~e~~y~a~~agl~~~~~~~-----~~g-l~i~i~G~s~-k 72 (172)
+|...+.+.+..|...+ .......++..+|.. .|.+.+.. . |+.|+++.. ..| +.+.+..-.+ +
T Consensus 22 ~~~~~v~~~~~~~~~~~--~d~~al~vl~~iLggg~sSrL~~~lre--~-gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGS--PDFVGLDLAATILADTPSSRLYHALVP--T-KLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CCSCEEEEEEECCCTTS--TTHHHHHHHHHHHHSSTTSHHHHHHTT--T-TSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCCceEEEEEecCCCCC--CcHHHHHHHHHHHcCCCCchHHHHHHh--c-CceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 46677777777776432 244555666666664 33333332 1 444444332 224 4566655555 5
Q ss_pred HHHHHHHHHHHhhcC---CcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHH
Q 030724 73 LRILLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAK 149 (172)
Q Consensus 73 ~~~ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~ 149 (172)
...++..+.+.+... .+++++++++|.++..++...... |...|..+....+........+.++.++++|.+|+++
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~-~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~ 175 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYAD-PEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQR 175 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHH
Confidence 888888887777654 599999999999999999876655 8888888877777643334677889999999999999
Q ss_pred HHHHHhcchheeEEeecC
Q 030724 150 FVPMMLSRTFLECYIAGP 167 (172)
Q Consensus 150 f~~~~~~~~~~~~lv~GN 167 (172)
+.++++.+.+...++.|.
T Consensus 176 ~a~~~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 176 AAVAYLVRSNRTEGRYIP 193 (197)
T ss_dssp HHHHHSSGGGCEEEEECC
T ss_pred HHHHhCCccCeEEEEEeC
Confidence 999999877777777764
No 19
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=98.89 E-value=6.7e-09 Score=91.15 Aligned_cols=167 Identities=11% Similarity=0.014 Sum_probs=130.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhccchhcceEEEeeeCCeeEEEEeecCccHHHH
Q 030724 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (172)
Q Consensus 3 ~~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e------~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~l 76 (172)
..|++.+.+.+..+...+.....+++.++..++-..... ..-.....|.+.+...+.+.....+...++.++.+
T Consensus 53 ~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~ 132 (990)
T 3cww_A 53 TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGA 132 (990)
T ss_dssp TCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHH
T ss_pred CCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHH
Confidence 358899999999998887777888999988887544322 11122335667777777777888888899999999
Q ss_pred HHHHHHHhhcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCCCC-------CHHH
Q 030724 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHL-------EAED 146 (172)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~~i-------t~ed 146 (172)
+..+.+.+.++.++++.|++-|..+..+++....+ |...+...+..++.++ +|. .....+.|+.+ |.++
T Consensus 133 l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~-~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~ 211 (990)
T 3cww_A 133 LDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMN-DAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211 (990)
T ss_dssp HHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHH
Confidence 99999999999999999999999999999987666 7667777777777653 222 22234555555 9999
Q ss_pred HHHHHHHHhcchheeEEeecCCCC
Q 030724 147 LAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 147 ~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
+++|+++++.+.++.+.|+||++.
T Consensus 212 l~~f~~~~Y~p~n~~l~v~Gd~~~ 235 (990)
T 3cww_A 212 LLKFHSAYYSSNLMAVVVLGRESL 235 (990)
T ss_dssp HHHHHHHHCCGGGEEEEEEESSCH
T ss_pred HHHHHHHhCCHhheEEEEEcCCCH
Confidence 999999999999999999999974
No 20
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.71 E-value=2.1e-07 Score=74.10 Aligned_cols=109 Identities=10% Similarity=0.065 Sum_probs=85.7
Q ss_pred eeEEEEeecCccHHHHHHHHHHHhhcC---CcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCC-HHHHH
Q 030724 61 GFEVTVVGYNHKLRILLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEEL 136 (172)
Q Consensus 61 gl~i~i~G~s~k~~~ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~-~~~~l 136 (172)
.+.+.+..-.++...+++.+.+.+..+ .+++++|+++|..++.++...... |...+..+....+....+. ..+..
T Consensus 311 ~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (434)
T 3gwb_A 311 PFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTAS-NADIVGQLGAMGFYNLPLSYLEDFM 389 (434)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred eEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHcCCCccHHHHHH
Confidence 356777766677788877777776554 589999999999999998877665 8888888777666655554 56788
Q ss_pred hhCCCCCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 137 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 137 ~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
+.++++|.+|++++.++++...+....++|+-..
T Consensus 390 ~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~~ 423 (434)
T 3gwb_A 390 RQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVA 423 (434)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCCC
T ss_pred HHHHhCCHHHHHHHHHHhcChhhEEEEEEcCccc
Confidence 9999999999999999999988899999998654
No 21
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.68 E-value=1.1e-06 Score=69.91 Aligned_cols=163 Identities=11% Similarity=0.060 Sum_probs=106.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc--hhcceEEEee-----eCCe-eEEEEeecCccHHH
Q 030724 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VAGLDYGINH-----TESG-FEVTVVGYNHKLRI 75 (172)
Q Consensus 4 ~Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~--~agl~~~~~~-----~~~g-l~i~i~G~s~k~~~ 75 (172)
.+.+.+.+.+..+... ++ ......++..++...+...++... ..|+.|+++. ...| +.+.+..-.++...
T Consensus 232 ~~q~~v~~~~~~~~~~-~~-d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~ 309 (421)
T 3hdi_A 232 TEQAHLCLGYPGLPIG-DK-DVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDD 309 (421)
T ss_dssp CSEEEEEEEEECCCTT-CT-THHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHH
T ss_pred CCceEEEEEEecCCCC-Cc-hHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHH
Confidence 4556666666665432 22 333445555555432222222211 1244333322 2234 45555555567888
Q ss_pred HHHHHHHHhhc---CCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhc-cCCCCCHHHHHhhCCCCCHHHHHHHH
Q 030724 76 LLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL-QDQTWPWMEELEVLPHLEAEDLAKFV 151 (172)
Q Consensus 76 ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l-~~~~~~~~~~l~~L~~it~ed~~~f~ 151 (172)
+++.+.+.+.. -.+++++++++|..++.++...... |...+.......+ .....+.++.++.++++|.+|++++.
T Consensus 310 ~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 388 (421)
T 3hdi_A 310 LVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLES-TNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA 388 (421)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 87777776654 4699999999999999998766655 7777777654444 34456678899999999999999999
Q ss_pred HHHhcchheeEEeecCCCC
Q 030724 152 PMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 152 ~~~~~~~~~~~lv~GN~~~ 170 (172)
++++ +......++|+.+.
T Consensus 389 ~~~~-~~~~~~~vvgp~~~ 406 (421)
T 3hdi_A 389 KILL-SASPSISLINANGE 406 (421)
T ss_dssp HHHT-TSCCEEEEEESSCS
T ss_pred HHHc-ccCcEEEEECchhc
Confidence 9999 88888999998653
No 22
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.67 E-value=1.1e-06 Score=69.83 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=82.4
Q ss_pred eEEEEeecC-ccHHHHHHHHHHHhhcC--CcChhhHHHHHHHHHHHhhh--cccCChHHHHHHHHHHhc-cCCCCCHHHH
Q 030724 62 FEVTVVGYN-HKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHN--NKFLQPFQLAMYYCSLIL-QDQTWPWMEE 135 (172)
Q Consensus 62 l~i~i~G~s-~k~~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n--~~~~~p~~~a~~~~~~~l-~~~~~~~~~~ 135 (172)
+.+.+..-. ++...+++.+.+.+... .+++++|+++|..++.++.. .... |...+..+....+ ........+.
T Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~ 380 (431)
T 3cx5_A 302 WGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGN-PVNDANLLGAEVLIKGSKLSLGEA 380 (431)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC-HHHHHHHHHHHHHhcCCCCCHHHH
Confidence 456666555 67777777766655433 79999999999999999888 5544 8888887766543 4444557788
Q ss_pred HhhCCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 136 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 136 l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
.+.++++|.+|++++.++++...+....++|+..
T Consensus 381 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 381 FKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 8999999999999999999977777888889754
No 23
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.66 E-value=4.8e-07 Score=71.68 Aligned_cols=161 Identities=12% Similarity=0.074 Sum_probs=111.0
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc-hhcceEEEeee-----CCe-eEEEEeecCccHHHHH
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ-VAGLDYGINHT-----ESG-FEVTVVGYNHKLRILL 77 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~-~agl~~~~~~~-----~~g-l~i~i~G~s~k~~~ll 77 (172)
+...+.+.+..|... ++. .....++..++.......++... ..|+.|+++.. ..| +.+.+..-.++...++
T Consensus 234 ~q~~~~~~~~~~~~~-~~d-~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 311 (406)
T 3eoq_A 234 RALYLVALFPGVAYQ-EEA-RFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVL 311 (406)
T ss_dssp SSEEEEEEEECCCTT-CTT-HHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHH
T ss_pred cceEEEEEecCCCCC-Cch-HHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHH
Confidence 455666666665543 332 34456666666543222221110 14565555432 224 4666666667888888
Q ss_pred HHHHHHhhcC---CcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHH
Q 030724 78 ETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPM 153 (172)
Q Consensus 78 ~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~~~~~~~~l~~L~~it~ed~~~f~~~ 153 (172)
+.+.+.+... .+++++++++|.++..++...... |...+..+....+. .+..+.++.++.++++|.+|+++..++
T Consensus 312 ~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~ 390 (406)
T 3eoq_A 312 AVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGET-PMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLER 390 (406)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 8887777654 599999999999999998776655 77888887766655 445668889999999999999999999
Q ss_pred HhcchheeEEeecCCC
Q 030724 154 MLSRTFLECYIAGPSV 169 (172)
Q Consensus 154 ~~~~~~~~~lv~GN~~ 169 (172)
++.+... ..++|+..
T Consensus 391 ~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 391 GFLEKGL-YYLVLPHG 405 (406)
T ss_dssp TTTTSCE-EEEEECCC
T ss_pred hcCcccE-EEEECCCC
Confidence 9988777 88999754
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.65 E-value=6e-07 Score=71.28 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=107.7
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhccc--hhcceEEEeee-----CCe-eEEEEeecCccHHH
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQ--VAGLDYGINHT-----ESG-FEVTVVGYNHKLRI 75 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~-l~e~~y~a~--~agl~~~~~~~-----~~g-l~i~i~G~s~k~~~ 75 (172)
+.+.+.+.+..|.. .++ ......++..++... +...++... ..|+.|+++.. ..| +.+.+..-.++...
T Consensus 241 ~~~~v~~~~~~~~~-~~~-~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 241 TQAHIAIGMPTLKR-GDP-DFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp SEEEEEEEEEEEBT-TCT-THHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred CccEEEeeccCCCC-CCc-chHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 44455555554332 222 334446666665543 333333222 23555555432 123 56666666677888
Q ss_pred HHHHHHHHhh---cCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCC-HHHHHhhCCCCCHHHHHHHH
Q 030724 76 LLETIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFV 151 (172)
Q Consensus 76 ll~~i~~~l~---~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~-~~~~l~~L~~it~ed~~~f~ 151 (172)
+++.+.+.+. +..+++++|+++|..++.++...... |...+..+....+....+. ..+..+.++++|.+|++++.
T Consensus 319 ~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 397 (424)
T 3amj_B 319 AVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDS-NAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAF 397 (424)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSS-HHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCC-HHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHH
Confidence 8777777665 44699999999999999998876654 8888887776666554444 45678899999999999999
Q ss_pred HHHhcchheeEEeecCCC
Q 030724 152 PMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 152 ~~~~~~~~~~~lv~GN~~ 169 (172)
++++.+.+...+++|+-.
T Consensus 398 ~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 398 ARHVKRENLITVVVGGKA 415 (424)
T ss_dssp HHHCCGGGCEEEEEECC-
T ss_pred HHhcCccceEEEEECChh
Confidence 999988888888888753
No 25
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.63 E-value=2.1e-06 Score=68.37 Aligned_cols=161 Identities=10% Similarity=0.030 Sum_probs=105.6
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--------hhhhhhccc--hhcceEEEeee-----CCe-eEEEEee
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY--------LNEYAYYAQ--VAGLDYGINHT-----ESG-FEVTVVG 68 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~--------l~e~~y~a~--~agl~~~~~~~-----~~g-l~i~i~G 68 (172)
+...+.+.+..|.. .+ .......++..++... +...++... ..|+.|+++.. ..| +.+.+..
T Consensus 251 ~~~~v~~~~~~~~~-~~-~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~ 328 (439)
T 1pp9_B 251 SLVHAALVAESAAI-GS-AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS 328 (439)
T ss_dssp SEEEEEEEEECCCT-TS-HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEEecCCCC-Cc-hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEe
Confidence 45556666666543 23 3445556666666321 111111111 12343333321 234 4566666
Q ss_pred cCccHHHHHHHHHHHhhc---CCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCH
Q 030724 69 YNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEA 144 (172)
Q Consensus 69 ~s~k~~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~~~~~~~~l~~L~~it~ 144 (172)
-.++....++.+.+.+.. ..+++++|+++|..++.++...... |...+..+....+. ......++..+.++++|.
T Consensus 329 ~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 407 (439)
T 1pp9_B 329 QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVES-SEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 407 (439)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Confidence 556888888877776654 5699999999999999998876554 87888777665554 444457888999999999
Q ss_pred HHHHHHHHHHhcchheeEEeecCCC
Q 030724 145 EDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 145 ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
+|++++.++++. .+....++|+..
T Consensus 408 ~dv~~~a~~~~~-~~~~~~v~g~~~ 431 (439)
T 1pp9_B 408 ADVINAAKKFVS-GRKSMAASGNLG 431 (439)
T ss_dssp HHHHHHHHHHHH-SCEEEEEEECGG
T ss_pred HHHHHHHHHHhc-CCceEEEECCcc
Confidence 999999999997 677788888754
No 26
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.56 E-value=7.9e-06 Score=65.22 Aligned_cols=107 Identities=10% Similarity=0.105 Sum_probs=83.5
Q ss_pred eEEEEeec--CccHHHHHHHHHHHh---hcCCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHh-ccCCCCCHHHH
Q 030724 62 FEVTVVGY--NHKLRILLETIFQKI---AQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEE 135 (172)
Q Consensus 62 l~i~i~G~--s~k~~~ll~~i~~~l---~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~-l~~~~~~~~~~ 135 (172)
+.+.+..- .++...+++.+.+.+ .+..+++++++++|..++.++...... |...+..+.... ......+..+.
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~ 395 (443)
T 1hr6_B 317 WGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDG-STAIVEDIGRQVVTTGKRLSPEEV 395 (443)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcCCHHHH
Confidence 35555554 568888887777666 455599999999999999999877655 777777766654 34545667888
Q ss_pred HhhCCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 136 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 136 l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
++.++++|.+|++++.++++...+..+.++|+..
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 396 FEQVDKITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 8999999999999999999987778888999753
No 27
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.52 E-value=5.1e-06 Score=67.22 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=84.3
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhcC------CcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHh-ccCCCCCHHH
Q 030724 62 FEVTVVGYNHKLRILLETIFQKIAQF------KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWME 134 (172)
Q Consensus 62 l~i~i~G~s~k~~~ll~~i~~~l~~~------~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~-l~~~~~~~~~ 134 (172)
+.+.+..-.++....++.+.+.+... .+++++|+++|..+..++...... |...+..+...+ ......+.++
T Consensus 316 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 394 (475)
T 1hr6_A 316 FGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLES-KLVELEDMGRQVLMHGRKIPVNE 394 (475)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCCCHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCCCCHHH
Confidence 46777766678888888888777653 489999999999999998875544 777787776654 3444556788
Q ss_pred HHhhCCCCCHHHHHHHHHHHhcc---------hheeEEeecCC
Q 030724 135 ELEVLPHLEAEDLAKFVPMMLSR---------TFLECYIAGPS 168 (172)
Q Consensus 135 ~l~~L~~it~ed~~~f~~~~~~~---------~~~~~lv~GN~ 168 (172)
..+.++++|.+|++++.++++.. ....+.++|+.
T Consensus 395 ~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 395 MISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 89999999999999999999976 47788889975
No 28
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.50 E-value=7.2e-06 Score=65.67 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=84.6
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhcC--CcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHh-ccCCCCCHHHHHhh
Q 030724 62 FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEV 138 (172)
Q Consensus 62 l~i~i~G~s~k~~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~-l~~~~~~~~~~l~~ 138 (172)
+.+.+..-.++....++.+.+.+... .+++++++++|..+..++...... |...+..+.... +.....+..+.++.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDG-TTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46666655568888888877766443 499999999999999998876544 878887766554 44445667888899
Q ss_pred CCCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 139 L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
++++|.+|++++.++++......+.++|+.+
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 9999999999999999987778889999865
No 29
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.48 E-value=3.2e-06 Score=67.69 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=107.8
Q ss_pred eeEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhhhhhhhcc--chhcceEEEeee------C-Ce-eEEEEeecCc-c
Q 030724 6 KAFVKIYFNCPHA--SSSPESEVLTDIFTRLLLDYLNEYAYYA--QVAGLDYGINHT------E-SG-FEVTVVGYNH-K 72 (172)
Q Consensus 6 k~~i~~~~~~~~~--~~s~~~~~~~~l~~~ll~~~l~e~~y~a--~~agl~~~~~~~------~-~g-l~i~i~G~s~-k 72 (172)
...+.+.+..|.. ..+........++..++.......++.. +..|+.|+++.. . .| +.+.+.+-.+ +
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~ 323 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVT 323 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCC
T ss_pred ccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCC
Confidence 3445555555551 2213445556677777764333333322 133666655432 2 24 4666666555 4
Q ss_pred HHHHHHHHHHHhhc---CCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCC-CHHHHHhhCCCCCHHHHH
Q 030724 73 LRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW-PWMEELEVLPHLEAEDLA 148 (172)
Q Consensus 73 ~~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~-~~~~~l~~L~~it~ed~~ 148 (172)
...+++.+.+.+.. -.+++++++++|..+..++...... |...+..+....+....+ ...+..+.++++|.+|++
T Consensus 324 ~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 402 (445)
T 3ami_A 324 IAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDS-LMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVK 402 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHH
Confidence 77777776666654 4599999999999999999877655 878888877777765444 456788899999999999
Q ss_pred HHHHHHhcchheeEEeecC
Q 030724 149 KFVPMMLSRTFLECYIAGP 167 (172)
Q Consensus 149 ~f~~~~~~~~~~~~lv~GN 167 (172)
++.++++.+.+...+++|.
T Consensus 403 ~~a~~~l~~~~~~~~~~~p 421 (445)
T 3ami_A 403 AAAARLLTDDTLTVANLVP 421 (445)
T ss_dssp HHHHTTSCSTTEEEEEEEE
T ss_pred HHHHHHcCcCCeEEEEEcc
Confidence 9999999877777777774
No 30
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=98.44 E-value=7.8e-07 Score=79.63 Aligned_cols=159 Identities=9% Similarity=0.018 Sum_probs=114.6
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhccch--hcceEEEeeeCCeeEEEEeecC-ccHHHHHHH
Q 030724 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQV--AGLDYGINHTESGFEVTVVGYN-HKLRILLET 79 (172)
Q Consensus 8 ~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e-----~~y~a~~--agl~~~~~~~~~gl~i~i~G~s-~k~~~ll~~ 79 (172)
.+.+.+.++... ..+++.++..++-..... ....... .|-..+...+.+.....+...+ +.++.++..
T Consensus 112 ~f~vg~~tep~~----~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l 187 (1193)
T 3s5m_A 112 AFAFYVKTLTHS----GKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGV 187 (1193)
T ss_dssp EEEEEEECCCSS----SSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCCCCC----CchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHH
Confidence 345556665433 345666766666544322 1111111 3445555556667778888777 889999999
Q ss_pred HHHHhhcCCcChhh--HHHH-----------------------------HHHHHHHhhhcccCChHHHHHHHHHHhccCC
Q 030724 80 IFQKIAQFKVKPDR--FSVI-----------------------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 128 (172)
Q Consensus 80 i~~~l~~~~~~~~~--F~~~-----------------------------k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~ 128 (172)
..+.+.+|.++++. |.+- |..+..+++....+ |...+...+...++++
T Consensus 188 ~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~-p~~~~~~~l~~~lf~~ 266 (1193)
T 3s5m_A 188 YMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSS-PLEDLYHEEMKYMFPD 266 (1193)
T ss_dssp HHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTC-HHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCC-HHHHHHHHHHHHhCCC
Confidence 99999999988877 8764 34677778777554 9999999988888864
Q ss_pred -C--CCHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecCCCCC
Q 030724 129 -T--WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGPSVSI 171 (172)
Q Consensus 129 -~--~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN~~~~ 171 (172)
+ +....-.+.|..+|++|+++|+++++.+.++..+|+||++.+
T Consensus 267 hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~ 312 (1193)
T 3s5m_A 267 NVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPT 312 (1193)
T ss_dssp SGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTH
T ss_pred CCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHH
Confidence 2 333345678899999999999999999999999999999864
No 31
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.43 E-value=7.8e-06 Score=64.64 Aligned_cols=159 Identities=9% Similarity=0.040 Sum_probs=100.1
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc--hhcceEEEeee---CCe-eEEEEeecCccHHHHHH
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VAGLDYGINHT---ESG-FEVTVVGYNHKLRILLE 78 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~y~a~--~agl~~~~~~~---~~g-l~i~i~G~s~k~~~ll~ 78 (172)
|.+.+.+.+..|....+ .......++..++.......++... ..|+.|+++.. ..| +.+.+..-.++....++
T Consensus 253 ~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~ 331 (425)
T 3d3y_A 253 AQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLR 331 (425)
T ss_dssp SSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHH
T ss_pred cccEEEEEeecCCCCCC-chHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHH
Confidence 44555666665432222 2344455666666322222222111 12444444332 234 45555544567887777
Q ss_pred HHHHHhhc---CCcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 030724 79 TIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMM 154 (172)
Q Consensus 79 ~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~-~~~~~~~~~l~~L~~it~ed~~~f~~~~ 154 (172)
.+.+.+.. -.+++++|+++|..++.++...... |...+..+....+. .......+..+.++++|.+|++++.+++
T Consensus 332 ~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~ 410 (425)
T 3d3y_A 332 LISTELENIRLGKIRELEIEQTKAMLKNQYILALDN-AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRL 410 (425)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC-HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhc
Confidence 77666544 4699999999999999998876654 88888877776666 4445578889999999999999999998
Q ss_pred hcchheeEEeecC
Q 030724 155 LSRTFLECYIAGP 167 (172)
Q Consensus 155 ~~~~~~~~lv~GN 167 (172)
+.. -...|.|+
T Consensus 411 ~~~--~~~~v~g~ 421 (425)
T 3d3y_A 411 ELQ--AIFFLEGE 421 (425)
T ss_dssp EEE--EEEEEEEE
T ss_pred cCc--eEEEEeCC
Confidence 644 33355554
No 32
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.32 E-value=1.1e-06 Score=77.27 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=110.5
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhh----hcc---chhcceEEEeeeCCeeEEEEeec-CccHHHHHHHH
Q 030724 9 VKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYA----YYA---QVAGLDYGINHTESGFEVTVVGY-NHKLRILLETI 80 (172)
Q Consensus 9 i~~~~~~~~~~~s~~~~~~~~l~~~ll~~~l~e~~----y~a---~~agl~~~~~~~~~gl~i~i~G~-s~k~~~ll~~i 80 (172)
+.+-+.++.. ...+++.++..++-......- +.. ...|-+.+...+.+.....+..- ++.++.++..+
T Consensus 61 ~~vg~~~e~~----~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~ 136 (995)
T 2fge_A 61 FGVVFRTPPK----DSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVY 136 (995)
T ss_dssp EEEEEECCCS----SSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCc----CCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHH
Confidence 4444454432 234666666666633322211 111 11244444444555555555543 46899999999
Q ss_pred HHHhhcCCc--ChhhHHHH---------------HHHHHHHhhhcccCChHHHHHHHHHHhccCC-CCC--HHHHHhhCC
Q 030724 81 FQKIAQFKV--KPDRFSVI---------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLP 140 (172)
Q Consensus 81 ~~~l~~~~~--~~~~F~~~---------------k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~-~~~--~~~~l~~L~ 140 (172)
.+.+.++.+ +++.|++- |..+..+++....+ |...+...+...++++ +|. .....+.|+
T Consensus 137 ~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~-p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~ 215 (995)
T 2fge_A 137 LDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQ-PDNILGRIAQQALSPENTYGVDSGGDPKDIP 215 (995)
T ss_dssp HHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTS-HHHHHHHHHHHHHCTTSGGGSCTTCCTTTGG
T ss_pred HHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCC-HHHHHHHHHHHHhCCCCCCCCCCCCChHhhh
Confidence 999999999 99999997 77888888876554 9999999988888864 332 334567888
Q ss_pred CCCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 141 HLEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 141 ~it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
.+|.+++++|+++++.+.++...|+||++.
T Consensus 216 ~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~ 245 (995)
T 2fge_A 216 NLTFEEFKEFHRQYYHPSNARIWFYGDDDP 245 (995)
T ss_dssp GCCHHHHHHHHHHHSSGGGEEEEEEESSCH
T ss_pred hcCHHHHHHHHHHhCCccceEEEEEcCCCH
Confidence 999999999999999999999999999985
No 33
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=98.23 E-value=0.00011 Score=59.96 Aligned_cols=162 Identities=9% Similarity=0.047 Sum_probs=101.0
Q ss_pred ceeEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeC----CeeEEEEeecCccHHHH
Q 030724 5 PKAFVKIYFNCPHAS-SSP---ESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTE----SGFEVTVVGYNHKLRIL 76 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~-~s~---~~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~----~gl~i~i~G~s~k~~~l 76 (172)
+...+.+-+..|... .+. +......++..++...+....-.....|+.++++... ....+.+.+-.++....
T Consensus 265 ~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a 344 (492)
T 3go9_A 265 AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTAN 344 (492)
T ss_dssp SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHH
T ss_pred CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHH
Confidence 445555555555432 222 1222344555555544443222223457776665431 23356667778888888
Q ss_pred HHHHHHHhhcC---CcChhhHHHHHHHHHHHhhhcc----cCChHHHHHHHHHHhccCCC-CCHHHH---H-hhCCCCCH
Q 030724 77 LETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNK----FLQPFQLAMYYCSLILQDQT-WPWMEE---L-EVLPHLEA 144 (172)
Q Consensus 77 l~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~----~~~p~~~a~~~~~~~l~~~~-~~~~~~---l-~~L~~it~ 144 (172)
+..+.+.+..+ .+++++++++|..++.++.... .+.+...|..+....+.... .++++. . +.++++|.
T Consensus 345 ~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 424 (492)
T 3go9_A 345 MTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTL 424 (492)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCH
Confidence 88887777654 5999999999999888865542 33466777777766655443 345553 3 45889999
Q ss_pred HHHHHHHHHHhcchheeEEeecC
Q 030724 145 EDLAKFVPMMLSRTFLECYIAGP 167 (172)
Q Consensus 145 ed~~~f~~~~~~~~~~~~lv~GN 167 (172)
+|+++..++++++... ++|+|+
T Consensus 425 edV~~~a~~~l~~~~~-~vvvg~ 446 (492)
T 3go9_A 425 AELNRELKQQLSQDTT-LVLMQP 446 (492)
T ss_dssp HHHHHHHHHHHTSCCE-EEEEEE
T ss_pred HHHHHHHHHHhCCCCe-EEEEcC
Confidence 9999999999986544 444543
No 34
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=97.53 E-value=0.00016 Score=64.84 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=115.5
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhh-------ccchhcceEEEeeeC--------------Cee
Q 030724 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAY-------YAQVAGLDYGINHTE--------------SGF 62 (172)
Q Consensus 5 Pk~~i~~~~~~~~~~~s~~~~~~~~l~~~ll~~-~l~e~~y-------~a~~agl~~~~~~~~--------------~gl 62 (172)
+-+++.+.|..+. -+.+...+..|++.++.+ ......| ....+|++++.+... ..+
T Consensus 738 GIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 738 GIVYLQFVFSLDH--LTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp TEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CeEEEEEEEECCC--CCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence 4566666666654 357778888999988844 3333222 334567777775421 236
Q ss_pred EEEEeecCccHHHHHHHHHHHhhcCCcChh-hHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCC-----CCHHHHH
Q 030724 63 EVTVVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT-----WPWMEEL 136 (172)
Q Consensus 63 ~i~i~G~s~k~~~ll~~i~~~l~~~~~~~~-~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~-----~~~~~~l 136 (172)
.++....+++++.++..+-+.|.++.+++. ++..+..+...++.+....+++..|...+...+.+.. ++-.+.+
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHH
Confidence 899999999999999999999999999864 6999999999999998887788888887766554321 1101111
Q ss_pred hhC-----------CCCCHHHHHHHHHHHhcchheeEEeecCCC
Q 030724 137 EVL-----------PHLEAEDLAKFVPMMLSRTFLECYIAGPSV 169 (172)
Q Consensus 137 ~~L-----------~~it~ed~~~f~~~~~~~~~~~~lv~GN~~ 169 (172)
..| +.+ .+++.++++.++++.++.+.++|+.+
T Consensus 896 ~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~ 938 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYG 938 (1193)
T ss_dssp HHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGG
T ss_pred HHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChh
Confidence 111 122 67889999999999999999999865
No 35
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=62.61 E-value=25 Score=24.41 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceE--EEeeeCCeeEEE-EeecCc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDY--GINHTESGFEVT-VVGYNH 71 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~--~~~~~~~gl~i~-i~G~s~ 71 (172)
++.+..++..++..+++..+.- ..|..+..|..| .+...++++.|+ .-|||+
T Consensus 55 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~ivGvGypira~~~g~~l~l~N~LG~sh 113 (178)
T 1vq8_E 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKA 113 (178)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSS
T ss_pred CCHHHHHHHHHHHHHHcCEEEEEccCeEEEEEEEeeCCceEEEEcCCEEEEEccccccc
Confidence 4677889999998888876633 456666667777 666666666654 567774
No 36
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=61.28 E-value=11 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.8
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~~ 82 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-+
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 24 EADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 46667888888888888 999999999888888777643
No 37
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=59.74 E-value=11 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=30.7
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 24 KALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 46667888888877888 99999999999888887775
No 38
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=56.10 E-value=14 Score=23.04 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=30.1
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 33 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 33 EAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 46667888888888888 99999999988887777664
No 39
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=55.47 E-value=14 Score=23.04 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=30.1
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 36 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 73 (101)
T 2bjd_A 36 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 73 (101)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 46667888888877888 99999999988888777663
No 40
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=55.45 E-value=14 Score=22.87 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.1
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 30 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 30 EGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 46667888888888888 99999999988877777664
No 41
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=54.10 E-value=12 Score=22.84 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.2
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i 80 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l 62 (91)
T 1w2i_A 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWA 62 (91)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHH
Confidence 46667888888888888 9999999988877777665
No 42
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=53.52 E-value=12 Score=22.94 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=29.4
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i 80 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 26 EAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp HHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 45666887778777788 9999999998888887776
No 43
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=53.40 E-value=37 Score=20.99 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhC--CCCCHHHHHHHHHHHh
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVL--PHLEAEDLAKFVPMML 155 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L--~~it~ed~~~f~~~~~ 155 (172)
++-|..+.+++.+.++..... +...+-.....+..+-+..-...+.+| ...|++++..|+..--
T Consensus 8 kEPFrDyVdRf~kalraeqa~-~~vK~wmt~tLlvQNANPdCk~iLkal~g~~~tl~em~~yi~~~~ 73 (96)
T 1eoq_A 8 SESFVDFANRLIKAVEGSDLP-PSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ 73 (96)
T ss_dssp TCCHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHSCHHHHHHHHHCCSCCCSHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHhhcc-HhHhhhhHHHHHHHhcCHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 355777777777777665543 222222222333333344445677888 3578999999998765
No 44
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=52.42 E-value=13 Score=27.87 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccchhcceEEEe-eeCCee-EEEEeecCccHHHHHHHHHHHhhcCCcChhhHHHHHHHH
Q 030724 24 SEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGIN-HTESGF-EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMV 101 (172)
Q Consensus 24 ~~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~-~~~~gl-~i~i~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~ 101 (172)
......++..++...+++..-.+ + ..... ....|+ .+.+.+ ++...+.+.+.+.+.+ .+++++++++|..+
T Consensus 233 ~~~~l~vl~~iLg~~lre~~gl~--~--~~~~~~~~~~g~~~i~~~~--~~~~~~~~~i~~~l~~-~~t~~el~~ak~~~ 305 (352)
T 3cx5_B 233 SLAQYEVLANYLTSALSELSGLI--S--SAKLDKFTDGGLFTLFVRD--QDSAVVSSNIKKIVAD-LKKGKDLSPAINYT 305 (352)
T ss_dssp THHHHHHHHHHHHSTTSTTGGGC--S--EEEEEEETTEEEEEEEEEE--SCHHHHHHHHHHHHHH-HHSCEECGGGHHHH
T ss_pred hHHHHHHHHHHhCcchhcccCce--E--EEeecCcCcceeEEEEEEe--CCHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 34555666777766555532111 1 22222 223353 444443 3455555555554443 38899999999999
Q ss_pred HHHhhhcccC
Q 030724 102 TKEYHNNKFL 111 (172)
Q Consensus 102 ~~~~~n~~~~ 111 (172)
+.++......
T Consensus 306 ~~~~~~~~~~ 315 (352)
T 3cx5_B 306 KLKNAVQNES 315 (352)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHhhhhc
Confidence 9998765543
No 45
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=48.62 E-value=64 Score=22.30 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceEEEeeeCCeeEEEEeecCc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~ 71 (172)
++.+..++..++..+++..+.- ..|..+..|..|.+...++.+.| .-|||+
T Consensus 56 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~~G~~l~l-~LG~Sh 110 (177)
T 1rl6_A 56 DEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVL-SVGYSH 110 (177)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEETTEEEE-ESSSSS
T ss_pred CCHHHHHHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEecCCEEEE-EecCCc
Confidence 4677788899998888876633 44555555555555554444544 445553
No 46
>3bv8_A Tetrahydrodipicolinate acetyltransferase; PFAM08503, structural genomics, PSI-2, PR structure initiative; 1.75A {Staphylococcus aureus subsp}
Probab=48.17 E-value=30 Score=21.04 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhcchheeEEeecCCCC
Q 030724 141 HLEAEDLAKFVPMMLSRTFLECYIAGPSVS 170 (172)
Q Consensus 141 ~it~ed~~~f~~~~~~~~~~~~lv~GN~~~ 170 (172)
..+-+++.+|++.--+..-+.++|-|++..
T Consensus 3 ~mda~eII~yI~~skKkTPVKvYvkG~l~~ 32 (87)
T 3bv8_A 3 ALTAEEIIQYISDAKKFTPIKVYLNGNFEG 32 (87)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCcEEEEEeccccc
Confidence 456789999999999999999999999854
No 47
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.76 E-value=62 Score=22.56 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceE--EEeeeCCeeEEE-EeecCc
Q 030724 19 SSSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDY--GINHTESGFEVT-VVGYNH 71 (172)
Q Consensus 19 ~~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~--~~~~~~~gl~i~-i~G~s~ 71 (172)
+++.+..++...++.+++..+.- ..|.....|..| .+...++.+.|. .-|||+
T Consensus 59 ~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh 118 (184)
T 3j21_F 59 FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKA 118 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSS
T ss_pred CCCHHHHHHHHHHHHHHHhhheeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCccc
Confidence 45677788888888888876633 445556666666 555555555554 457774
No 48
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=46.13 E-value=9.6 Score=18.28 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.8
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHH
Q 030724 131 PWMEELEVLPHLEAEDLAKFVPMM 154 (172)
Q Consensus 131 ~~~~~l~~L~~it~ed~~~f~~~~ 154 (172)
+.++.++++.+.|.-++.++++.+
T Consensus 2 ~~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHH
Confidence 356788999999999988888765
No 49
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=43.79 E-value=22 Score=22.01 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=29.1
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 34 ~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~ 71 (98)
T 3trg_A 34 KAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 71 (98)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHH
Confidence 46667888788777788 99999999888777766653
No 50
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=41.36 E-value=30 Score=22.39 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.0
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i~ 81 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+-
T Consensus 56 ~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~ 93 (121)
T 2lxf_A 56 EADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH 93 (121)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 46667888888777777 99999999999888887763
No 51
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=40.42 E-value=15 Score=22.71 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.7
Q ss_pred ccchhcceEEEeeeCCe-eEEEEeecCccHHHHHHHH
Q 030724 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 45 ~a~~agl~~~~~~~~~g-l~i~i~G~s~k~~~ll~~i 80 (172)
.|...|+.-.+....+| +.+.+.|-.+.+..++..+
T Consensus 29 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l 65 (98)
T 1aps_A 29 EARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWL 65 (98)
T ss_dssp HHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSS
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHH
Confidence 46667888888877888 9999999988766665443
No 52
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=35.79 E-value=41 Score=17.18 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhcchhee
Q 030724 132 WMEELEVLPHLEAEDLAKFVPMMLSRTFLE 161 (172)
Q Consensus 132 ~~~~l~~L~~it~ed~~~f~~~~~~~~~~~ 161 (172)
.+++++.|.++|+-++.+.++.+-....+.
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCCC
Confidence 467899999999999999998876655443
No 53
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=32.41 E-value=72 Score=18.14 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEeeeCCeeEEEEeecCccHHHHHHHHHHHh
Q 030724 54 GINHTESGFEVTVVGYNHKLRILLETIFQKI 84 (172)
Q Consensus 54 ~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l 84 (172)
.....++.+.|++.|-.+....-+.+-.+.+
T Consensus 34 tytldgndleiritgvpeqvrkelakeaerl 64 (85)
T 2kl8_A 34 TYTLDGNDLEIRITGVPEQVRKELAKEAERL 64 (85)
T ss_dssp EEEECSSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecCCeeEEEEecChHHHHHHHHHHHHHH
Confidence 3344568899999999887765554444433
No 54
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=32.40 E-value=78 Score=21.28 Aligned_cols=77 Identities=8% Similarity=-0.046 Sum_probs=53.9
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhcc-cCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcc
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSR 157 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~-~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~ 157 (172)
=..+++-+++-.+|=+...+-..--+... ..+|++...-.+..+|-..+++..|..+...-+.-+-+..+++.+++.
T Consensus 45 ESqLrnG~IsVReFVR~LakS~~Yr~~f~~~~~n~R~IEl~~khlLGRap~~q~Ei~~~~~ila~~G~~a~IDslidS 122 (149)
T 2ky4_A 45 ESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQAEIRKYNQILATQGIRAFINALVNS 122 (149)
T ss_dssp HHHHHHTSSCHHHHHHHHHHCHHHHHHHTSSSCHHHHHHHHHHHHTSSCCCSHHHHHHHHHHHHHTCHHHHHHHHHSS
T ss_pred HHHHHcCCccHHHHHHHHHcCHHHHHHhccCCCcchhHHHhhhhccCCCCCCHHHHHHHHHHHHccCcHHHHHHHhCc
Confidence 35567777888888776544332222223 234677777778899999999999988877777777788888887743
No 55
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=32.09 E-value=83 Score=22.48 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceEEEeeeCCeeEEEEeecCcc
Q 030724 20 SSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (172)
Q Consensus 20 ~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k 72 (172)
++.+..++..++..+++..+.- ..|..+..|..|.+...++.+.| .-|||+-
T Consensus 84 ~~k~~ra~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G~~L~L-~LG~SHp 139 (212)
T 1nkw_E 84 DAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEM-NIGYSHP 139 (212)
T ss_pred CCHHHHHHHHHHHHHhhCEEEeeccCeEEEEEEeeeeeEEEcCCCEEEE-EccCCcc
Confidence 4677788999999998876522 45566666666666655555655 5567743
No 56
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=31.93 E-value=1.3e+02 Score=20.83 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhh----hhhccchhcceEEEeeeCCeeEEEEeecCc
Q 030724 19 SSSPESEVLTDIFTRLLLDYLNE----YAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (172)
Q Consensus 19 ~~s~~~~~~~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gl~i~i~G~s~ 71 (172)
+++.+..++...++.+++..+.- ..|.....|..|.+...++.+.| .-|||+
T Consensus 56 ~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyra~~~g~~l~l-~LG~sh 111 (180)
T 3v2d_H 56 SDERRHKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALEL-TVGFSH 111 (180)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEETTEEEE-ECSSSS
T ss_pred CCcHHHHHHHHHHHHHHhhhEEeecCCcEEEEEEEEEeeEEEECCCEEEE-EecCCe
Confidence 45677788888888888876633 44555666666666665666666 567774
No 57
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=30.98 E-value=95 Score=20.85 Aligned_cols=77 Identities=4% Similarity=-0.136 Sum_probs=53.5
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhcc-cCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcc
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSR 157 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~-~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~ 157 (172)
=..+++-+++-.+|-+...+-..--+... ..+|++...-....+|-..+++..|..+...-+.-+-+.++++.+++.
T Consensus 42 ESqLrnG~ItVReFVR~LakSe~Yr~~f~~~~~n~R~IEl~~khlLGRap~~q~Ei~~~~~i~a~~G~~a~IDslidS 119 (148)
T 3nph_B 42 ESLLRGREISVRDFVRAVALSEVYRQKFFHSNPQNRFIELNYKHLLGRAPYDQSEIAFHTDLYHQGGYEAEINSYIDS 119 (148)
T ss_dssp HHHHHTTSSCHHHHHHHHHTSHHHHHHHTTTSCHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHCHHHHHHHHHTS
T ss_pred HHHHhcCCccHHHHHHHHHccHHHHHHhccCCCcchHHHHHhhhhcCCCCCCHHHHHHHHHHHHhcCcHHHHHHHhCc
Confidence 34566777888888775543222222222 234677777778899999999999988887777777888888888743
No 58
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=29.71 E-value=57 Score=17.14 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=16.0
Q ss_pred cChhhHHHHHHHHHHHhhhcccC
Q 030724 89 VKPDRFSVIKEMVTKEYHNNKFL 111 (172)
Q Consensus 89 ~~~~~F~~~k~~~~~~~~n~~~~ 111 (172)
++..++++.|+.++++++.....
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK 26 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQK 26 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888777777765543
No 59
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=29.70 E-value=1.1e+02 Score=20.62 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=55.2
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcc-cCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcc
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSR 157 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~-~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~ 157 (172)
.+=..+++-+++-.+|-+...+-..--+... ..+|++...-.+..+|-..+++..|..+...-+.-+-+..+++.+++.
T Consensus 52 ~lESqlrnG~IsVReFVR~LakS~~Yr~~f~~~~~n~R~IEl~~khlLGRap~~~~E~~~~~~ila~~G~~a~IdslidS 131 (148)
T 3ohw_B 52 ALESKLSNNEINVKEFIEGLGTSELYMKEFYAPYPNTKVIEMGTKHFLGRAPLNQKEIQQYNQILASQGLKAFIGAMVNG 131 (148)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHTSHHHHHHHTSSSCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHHHHCHHHHHHHHHTS
T ss_pred cHHHHHHcCCcCHHHHHHHHHcCHHHHHHhccCCCchHHHHHHhhhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHhCc
Confidence 3445667777888888776543222222222 234677777778899999999999998888777777888888888743
No 60
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=28.36 E-value=85 Score=21.23 Aligned_cols=75 Identities=8% Similarity=-0.032 Sum_probs=52.7
Q ss_pred HHHhhcCCcChhhHHHHHHHHHHHhhhcc--cCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 030724 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNK--FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (172)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~--~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (172)
=..+++-+++-.+|-+...+-.. |++.. ...|++...-.+..+|-..+++..|..+...-+.-+-+..+++.+++
T Consensus 47 ESql~nG~ItVReFVR~LakSe~-Yr~~f~~~~~n~R~IEl~~khlLGR~p~~~~E~~~~~~i~a~~G~~a~IDslid 123 (154)
T 3pru_C 47 ESLLTNGSISVREFVRTVAKSEL-YKKKFLYNNFQTRVIELNYKHLLGRAPFSEDEVIFHLDLYENQGFDADIDSYID 123 (154)
T ss_dssp HHHHHHTSSCHHHHHHHHHTSHH-HHHHHTTTSCHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHcCCcCHHHHHHHHHcCHH-HHHHhccCCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCchhhhhHhhC
Confidence 34556667787888775543222 33222 23467777778899999999999999888777777778888888774
No 61
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=26.81 E-value=1.3e+02 Score=19.32 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=44.6
Q ss_pred EeecCccHHHHHHHHHHHhhcCC--cChhhHHHHHHHHHHHhhhcccCChHHHHHHH--HHHhccCC
Q 030724 66 VVGYNHKLRILLETIFQKIAQFK--VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY--CSLILQDQ 128 (172)
Q Consensus 66 i~G~s~k~~~ll~~i~~~l~~~~--~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~--~~~~l~~~ 128 (172)
++|=+|--.+.+..|-+.+.+++ ...+.+..+...+..++++.....|+-...-. +..++.++
T Consensus 27 FsGGkER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~~~tSvPfILSRMNldIS~vL~~n 93 (118)
T 2zrr_A 27 FSGGDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKNEGTSVPLVLSRMNIEISNAIKKD 93 (118)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcCCCCchhHHHHhhHHHHHHHHHC
Confidence 45667777777777777776665 45677999999999999999988897776653 34555554
No 62
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=26.16 E-value=1.1e+02 Score=18.23 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=34.4
Q ss_pred CCCCCHHHHHhhCCCCCHHHHHHHHHHHhcchheeEEeecC
Q 030724 127 DQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGP 167 (172)
Q Consensus 127 ~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~lv~GN 167 (172)
+...+-+++...+..++.++...-+..+++..+++.+=.|+
T Consensus 27 P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~~ 67 (81)
T 2dk8_A 27 PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT 67 (81)
T ss_dssp SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECSS
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecCC
Confidence 34566788889999999999999999999999999775443
No 63
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=24.96 E-value=1.5e+02 Score=21.85 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhcceEEEeeeCCeeEEEEeecCccHHHHHHHHHHHhhcCC-------c-------C
Q 030724 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-------V-------K 90 (172)
Q Consensus 25 ~~~~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~l~~~~-------~-------~ 90 (172)
..++.|+...+.+.+.+. ..+|+.+.+-|--+.+|.-+...++.....+ + .
T Consensus 90 ~~Lm~L~~~~l~~~~~~l---------------~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~Ygg 154 (256)
T 4h8e_A 90 NYIMNLPVNFLKTFLPEL---------------IEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGG 154 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------HHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 566777777666655332 2478889999988887777666666654322 1 1
Q ss_pred hhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccC
Q 030724 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 127 (172)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~ 127 (172)
.++.-.+..++.++.++-... |-....+.+...|+.
T Consensus 155 R~EI~~Avr~i~~~v~~g~l~-~~~I~e~~i~~~L~t 190 (256)
T 4h8e_A 155 RAELVHSIKNMFDELHQQGLN-SDIIDETYINNHLMT 190 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-GGGCCHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHhCCC
Confidence 456666666676666665554 544445555555553
No 64
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=24.68 E-value=1.6e+02 Score=19.69 Aligned_cols=79 Identities=8% Similarity=-0.065 Sum_probs=57.1
Q ss_pred HHHHHhhcCCcChhhHHHHHHHHHHHhhhcc-cCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcc
Q 030724 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSR 157 (172)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~-~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~ 157 (172)
.+=..+++-+++-.+|-+...+-..--+... ..+|++...-.+..+|-..+++..|..+...-+.-+-+..+++.+++.
T Consensus 51 ~lESql~nG~ItVReFIR~LakS~~Yr~~f~~~~~n~R~IEl~~khlLGR~p~~~~E~~~~~~i~a~~G~~a~IDslidS 130 (147)
T 3osj_A 51 YLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVSSGGLPALVDALVDS 130 (147)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHSHHHHHHHTTTSCHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHcCCccHHHHHHHHHcCHHHHHHhccCCCchHHHHHHhhhhcCCCCCCHHHHHHHHHHHHccCcHhHHHHHhCc
Confidence 3445677778888888776544332222222 234677777788899999999999999888888888889999888743
No 65
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.99 E-value=57 Score=19.51 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=34.2
Q ss_pred HHHHHhhcC-CcChhhHHHHHHHHHHHhhhcccCChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHH
Q 030724 79 TIFQKIAQF-KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLA 148 (172)
Q Consensus 79 ~i~~~l~~~-~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~~l~~~~~~~~~~l~~L~~it~ed~~ 148 (172)
.+++.+..- -+++++.+.++. . ..+..+|..++..+...+.-.....+++|++.....+.
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~--------~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRN--------E--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHT--------S--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHc--------C--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 344444433 356666666554 1 23677777777777665544455566777665544443
No 66
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=22.55 E-value=1.6e+02 Score=18.77 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=23.8
Q ss_pred cceEEEeeeCCeeEEEEeecCccHHHHHHHHHH
Q 030724 50 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (172)
Q Consensus 50 gl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~ 82 (172)
|-.|+|.. +|+.++++|=+-.+..+++..+.
T Consensus 87 gCTYSIR~--RGvs~T~SGGSrtLq~L~eMAiR 117 (136)
T 1r9f_A 87 GCTYSIRF--RGVSITVSGGSRTLQHLCEMAIR 117 (136)
T ss_dssp EEEEEEEE--TTEEEEEEEEGGGHHHHHHHHHH
T ss_pred ceeEEEEE--eeEEEEEcCCcHHHHHHHHHHHH
Confidence 44566654 89999999999998888776554
No 67
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=21.88 E-value=80 Score=21.45 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=21.7
Q ss_pred EeeeCCeeEEEEeecCccHHHHHHHH
Q 030724 55 INHTESGFEVTVVGYNHKLRILLETI 80 (172)
Q Consensus 55 ~~~~~~gl~i~i~G~s~k~~~ll~~i 80 (172)
++.+.+.+.+.+.|-.+|+..+++.+
T Consensus 114 vdv~~~~~~ie~tg~~~ki~~~~~~l 139 (164)
T 2f1f_A 114 IDVTPSLYTVQLAGTSGKLDAFLASI 139 (164)
T ss_dssp EEECSSEEEEEEEECHHHHHHHHHHH
T ss_pred EEECCCEEEEEEeCCHHHHHHHHHHH
Confidence 45567889999999999988887765
No 68
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=20.78 E-value=1.8e+02 Score=19.20 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=24.7
Q ss_pred cceEEEeeeCCeeEEEEeecCccHHHHHHHHHHH
Q 030724 50 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQK 83 (172)
Q Consensus 50 gl~~~~~~~~~gl~i~i~G~s~k~~~ll~~i~~~ 83 (172)
|-.|+|.+ +|+.++++|=|-.+..|++..+..
T Consensus 109 gCTYSIRf--RG~svT~SGGSrtLq~L~eMAiR~ 140 (172)
T 1rpu_A 109 GCTYSIRF--RGVSVTISGGSRTLQHLCEMAIRS 140 (172)
T ss_dssp EEEEEEEE--TTEEEEEEEEGGGHHHHHHHHHHH
T ss_pred ceeEEEEE--eeEEEEecCCcHHHHHHHHHHHHH
Confidence 55666655 899999999999988887765543
Done!