BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030725
MACVLTPATAIPVRHQVNRLSVNFTLTYTSSQFYQTTTVRKCRCNGQFLTTKAKMSVEGG
ILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGR
DRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVDG

High Scoring Gene Products

Symbol, full name Information P value
AT5G57040 protein from Arabidopsis thaliana 3.7e-50

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030725
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2164600 - symbol:AT5G57040 "AT5G57040" species...   494  3.7e-50   2


>TAIR|locus:2164600 [details] [associations]
            symbol:AT5G57040 "AT5G57040" species:3702 "Arabidopsis
            thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] [GO:0009507
            "chloroplast" evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 GO:GO:0016829 EMBL:AB024035 InterPro:IPR025870
            Pfam:PF12681 HOGENOM:HOG000232011 UniGene:At.23555 UniGene:At.45477
            EMBL:AY088499 EMBL:BT024587 EMBL:AK227223 IPI:IPI00543485
            RefSeq:NP_200514.1 ProteinModelPortal:Q9LTR8 SMR:Q9LTR8
            STRING:Q9LTR8 PaxDb:Q9LTR8 PRIDE:Q9LTR8 ProMEX:Q9LTR8
            EnsemblPlants:AT5G57040.1 GeneID:835808 KEGG:ath:AT5G57040
            TAIR:At5g57040 eggNOG:NOG311671 InParanoid:Q9LTR8 KO:K08234
            OMA:ACIAIRD PhylomeDB:Q9LTR8 ProtClustDB:CLSN2720846
            Genevestigator:Q9LTR8 Uniprot:Q9LTR8
        Length = 197

 Score = 494 (179.0 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 90/98 (91%), Positives = 95/98 (96%)

Query:    73 IGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 132
             +GLEINEARPHDKLPYRGAWLWVG+EMIHLMELPNPDPL+GRPEHGGRDRH CIAIRDVS
Sbjct:   100 LGLEINEARPHDKLPYRGAWLWVGSEMIHLMELPNPDPLTGRPEHGGRDRHACIAIRDVS 159

Query:   133 KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 170
              LK ILDKAGI+YT+SKSGRPAIFTRDPDANALEFTQV
Sbjct:   160 NLKEILDKAGIAYTMSKSGRPAIFTRDPDANALEFTQV 197

 Score = 45 (20.9 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query:    39 VRKCRCNGQFLTTKAKM---SVEG-GILKKEPIRDSDKIGL 75
             VRK R N +F + KAK    S+EG  +++++ + +    G+
Sbjct:    36 VRKERINVRFYSLKAKAQGSSIEGISVVQEKELNNKTDYGV 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       158   0.00085  106 3  11 22  0.49    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  146 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.52u 0.14s 14.66t   Elapsed:  00:00:01
  Total cpu time:  14.52u 0.14s 14.66t   Elapsed:  00:00:01
  Start:  Thu May  9 18:06:04 2013   End:  Thu May  9 18:06:05 2013

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