BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030725
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 93 LWVGAEMIHLMELPNP-DPLSGRPEHGGRDR--HTCIAIRDVSKLKMILDKAGISYT--- 146
L GA+ I+L + +P + RP G D T I DV + IL +AGIS
Sbjct: 59 LIFGAQKINLHQQEXEFEPKASRPTPGSADLCFITSTPINDV--VSEIL-QAGISIVEGP 115
Query: 147 LSKSGRP----AIFTRDPDANALEFTQ 169
+ ++G +I+ RDPD N +E +Q
Sbjct: 116 VERTGATGEIXSIYIRDPDGNLIEISQ 142
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 19/90 (21%)
Query: 93 LWVGAEMIHL----MELPNPDPLSGRPEHGGRDR--HTCIAIRDVSKLKMILDKAGISYT 146
L GA+ I+L ME +P + RP G D T I DV + IL +AGIS
Sbjct: 59 LIFGAQKINLHQQEMEF---EPKASRPTPGSADLCFITSTPINDV--VSEIL-QAGISIV 112
Query: 147 ---LSKSGRP----AIFTRDPDANALEFTQ 169
+ ++G +I+ RDPD N +E +Q
Sbjct: 113 EGPVERTGATGEIMSIYIRDPDGNLIEISQ 142
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 106 PNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 148
P +P+ GR + G ++ V+KL K GISYT S
Sbjct: 631 PGANPMHGRDQKGA-----VASLTSVAKLPFAYAKDGISYTFS 668
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 106 PNPDPLSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 148
P +P+ GR + G ++ V+KL K GISYT S
Sbjct: 631 PGANPMHGRDQKGA-----VASLTSVAKLPFAYAKDGISYTFS 668
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 62 LKKEPIRDSDKIGLEINEARPHDKLPYRGA---WLWVG---AEMIHLMELPNPDPLSGRP 115
L+K + +G +++EA P LP G ++ +G E++H + L +P +
Sbjct: 16 LEKAAAFYKNILGAQVSEAVP---LPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQK 72
Query: 116 EHGGRDRHTCIAIRDVSKLKMILDKAGI-----SYTLSKSGRPAIFTRDPD 161
G H CI + +++ M L K I + G+P IF D
Sbjct: 73 NKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKD 123
>pdb|2KRH|A Chain A, Structure Of The C-Terminal Actin Binding Domain Of Abra
Length = 85
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE 98
K+ V G L +R SDK+ + AR H + + G LW G +
Sbjct: 31 GKIQVTFGELFDRYVRISDKVVGILMRARKHGLVHFEGEMLWQGKD 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,876,536
Number of Sequences: 62578
Number of extensions: 189173
Number of successful extensions: 355
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 6
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)