Query 030725
Match_columns 172
No_of_seqs 191 out of 1231
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.8 1.4E-18 3E-23 124.6 15.2 116 52-169 7-128 (129)
2 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.9E-18 8.5E-23 124.6 15.3 118 52-170 4-141 (142)
3 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.4E-18 5.1E-23 122.1 13.7 115 53-168 3-125 (125)
4 PRK10291 glyoxalase I; Provisi 99.8 1.9E-18 4.2E-23 124.7 12.5 110 57-170 2-120 (129)
5 PLN02367 lactoylglutathione ly 99.8 6.7E-18 1.4E-22 133.6 16.1 119 52-171 76-223 (233)
6 cd08342 HPPD_N_like N-terminal 99.8 4.5E-18 9.8E-23 124.2 13.5 117 53-171 2-124 (136)
7 PLN03042 Lactoylglutathione ly 99.8 1.3E-17 2.7E-22 128.6 16.2 121 52-172 28-176 (185)
8 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 6.2E-18 1.3E-22 117.0 12.9 109 53-167 2-114 (114)
9 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 1.3E-17 2.8E-22 117.9 14.5 117 52-169 4-125 (125)
10 TIGR03645 glyox_marine lactoyl 99.8 1.2E-17 2.6E-22 125.9 14.8 120 52-171 5-152 (162)
11 TIGR03081 metmalonyl_epim meth 99.8 6.3E-18 1.4E-22 120.6 11.5 117 53-169 3-128 (128)
12 cd09011 Glo_EDI_BRP_like_23 Th 99.8 1.4E-17 2.9E-22 118.6 13.1 112 52-170 3-119 (120)
13 cd08355 Glo_EDI_BRP_like_14 Th 99.8 6.1E-17 1.3E-21 115.3 16.0 114 56-169 4-121 (122)
14 cd07233 Glyoxalase_I Glyoxalas 99.8 3.5E-17 7.7E-22 115.6 14.5 113 53-168 2-121 (121)
15 cd08364 FosX FosX, a fosfomyci 99.8 2.9E-17 6.4E-22 119.2 14.2 112 51-170 4-122 (131)
16 cd07247 SgaA_N_like N-terminal 99.8 5.2E-17 1.1E-21 114.1 15.0 108 53-169 2-114 (114)
17 cd08363 FosB FosB, a fosfomyci 99.8 1.9E-17 4E-22 120.4 12.8 108 53-170 2-115 (131)
18 PRK04101 fosfomycin resistance 99.8 4.5E-17 9.9E-22 119.3 14.4 109 52-170 5-119 (139)
19 cd07263 Glo_EDI_BRP_like_16 Th 99.7 6.7E-17 1.5E-21 113.1 14.1 111 54-169 1-119 (119)
20 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 1.5E-16 3.2E-21 112.5 15.7 113 55-169 5-121 (122)
21 cd07243 2_3_CTD_C C-terminal d 99.7 6.8E-17 1.5E-21 119.3 14.0 109 52-169 7-124 (143)
22 cd07252 BphC1-RGP6_N_like N-te 99.7 7.8E-17 1.7E-21 115.0 13.9 104 53-170 4-117 (120)
23 cd08359 Glo_EDI_BRP_like_22 Th 99.7 8.9E-17 1.9E-21 113.7 13.8 110 53-169 3-119 (119)
24 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1.3E-16 2.8E-21 112.8 14.4 113 53-170 5-125 (125)
25 cd08347 PcpA_C_like C-terminal 99.7 7E-17 1.5E-21 121.3 13.6 111 53-171 3-121 (157)
26 cd08350 BLMT_like BLMT, a bleo 99.7 8.8E-17 1.9E-21 114.5 13.4 104 54-170 5-119 (120)
27 cd08345 Fosfomycin_RP Fosfomyc 99.7 8.1E-17 1.8E-21 112.8 12.2 105 54-170 1-111 (113)
28 cd08361 PpCmtC_N N-terminal do 99.7 2.4E-16 5.3E-21 113.3 14.9 106 50-171 5-120 (124)
29 TIGR00068 glyox_I lactoylgluta 99.7 1.1E-16 2.4E-21 118.7 13.4 118 52-170 18-141 (150)
30 cd07267 THT_Oxygenase_N N-term 99.7 2.2E-16 4.8E-21 111.5 14.1 103 52-169 4-109 (113)
31 cd08349 BLMA_like Bleomycin bi 99.7 2.6E-16 5.6E-21 109.6 13.9 105 56-169 3-112 (112)
32 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.7E-16 5.9E-21 111.8 14.2 114 53-170 2-125 (125)
33 cd08346 PcpA_N_like N-terminal 99.7 2.8E-16 6E-21 111.3 13.4 114 53-168 3-126 (126)
34 PLN02300 lactoylglutathione ly 99.7 2.2E-16 4.8E-21 128.9 14.5 125 42-170 15-148 (286)
35 cd07257 THT_oxygenase_C The C- 99.7 1E-16 2.2E-21 119.6 11.0 109 53-169 3-124 (153)
36 cd07265 2_3_CTD_N N-terminal d 99.7 4.9E-16 1.1E-20 110.7 14.0 106 52-171 5-120 (122)
37 PF12681 Glyoxalase_2: Glyoxal 99.7 3.9E-16 8.4E-21 108.3 13.2 100 57-168 1-108 (108)
38 cd08351 ChaP_like ChaP, an enz 99.7 4.7E-16 1E-20 111.3 13.8 103 53-171 6-122 (123)
39 cd07255 Glo_EDI_BRP_like_12 Th 99.7 6.3E-16 1.4E-20 110.1 14.2 109 53-170 4-119 (125)
40 cd07244 FosA FosA, a Fosfomyci 99.7 3.3E-16 7.2E-21 111.7 12.8 105 53-170 3-110 (121)
41 cd08356 Glo_EDI_BRP_like_17 Th 99.7 3.3E-16 7.1E-21 110.9 12.5 100 55-169 5-113 (113)
42 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 6.7E-16 1.5E-20 108.3 14.0 101 55-170 4-111 (112)
43 cd09012 Glo_EDI_BRP_like_24 Th 99.7 3.7E-16 8E-21 111.7 12.9 112 53-169 2-123 (124)
44 cd08360 MhqB_like_C C-terminal 99.7 5E-16 1.1E-20 113.0 13.6 105 52-170 4-120 (134)
45 cd09013 BphC-JF8_N_like N-term 99.7 5.3E-16 1.1E-20 110.5 12.4 107 50-170 5-118 (121)
46 cd07240 ED_TypeI_classII_N N-t 99.7 9.9E-16 2.1E-20 107.6 13.4 103 53-170 4-114 (117)
47 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1.3E-15 2.9E-20 108.9 14.2 112 53-170 3-128 (128)
48 cd07235 MRD Mitomycin C resist 99.7 9E-16 1.9E-20 109.1 13.1 111 53-168 2-121 (122)
49 cd08354 Glo_EDI_BRP_like_13 Th 99.7 1.5E-15 3.2E-20 107.4 14.0 112 54-170 3-122 (122)
50 cd07254 Glo_EDI_BRP_like_20 Th 99.7 1.8E-15 4E-20 107.3 14.4 107 53-171 3-118 (120)
51 cd08357 Glo_EDI_BRP_like_18 Th 99.7 8.1E-16 1.8E-20 109.2 12.3 110 54-169 2-124 (125)
52 cd08362 BphC5-RrK37_N_like N-t 99.7 1.4E-15 3E-20 107.6 13.3 105 52-170 4-117 (120)
53 cd07249 MMCE Methylmalonyl-CoA 99.7 8.9E-16 1.9E-20 109.2 12.4 117 53-169 2-128 (128)
54 cd07239 BphC5-RK37_C_like C-te 99.7 1.2E-15 2.7E-20 112.8 13.5 102 53-170 6-117 (144)
55 cd07256 HPCD_C_class_II C-term 99.7 1.4E-15 3.1E-20 114.3 13.7 108 52-170 4-123 (161)
56 cd08343 ED_TypeI_classII_C C-t 99.7 2.1E-15 4.6E-20 109.1 14.1 107 53-170 1-117 (131)
57 cd07261 Glo_EDI_BRP_like_11 Th 99.7 2E-15 4.2E-20 106.1 13.4 104 55-168 2-113 (114)
58 cd08358 Glo_EDI_BRP_like_21 Th 99.7 2.7E-15 5.8E-20 109.1 14.4 109 52-169 3-126 (127)
59 cd08348 BphC2-C3-RGP6_C_like T 99.7 4.2E-15 9.1E-20 107.4 15.3 110 53-170 3-120 (134)
60 cd09014 BphC-JF8_C_like C-term 99.7 3.1E-15 6.7E-20 113.1 14.4 111 52-170 7-127 (166)
61 cd06587 Glo_EDI_BRP_like This 99.7 2.6E-15 5.6E-20 102.5 12.5 108 54-167 1-112 (112)
62 cd07237 BphC1-RGP6_C_like C-te 99.7 2.6E-15 5.6E-20 112.1 13.2 108 53-170 11-131 (154)
63 cd07258 PpCmtC_C C-terminal do 99.7 2.1E-15 4.7E-20 111.3 12.6 103 54-169 2-113 (141)
64 cd07251 Glo_EDI_BRP_like_10 Th 99.7 3.6E-15 7.7E-20 105.2 12.9 110 55-169 2-120 (121)
65 PF00903 Glyoxalase: Glyoxalas 99.7 1.7E-16 3.7E-21 112.2 6.1 115 53-167 3-128 (128)
66 PRK06724 hypothetical protein; 99.6 1.1E-14 2.4E-19 105.8 13.5 103 52-170 8-123 (128)
67 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1E-14 2.2E-19 103.8 13.0 106 53-168 2-122 (123)
68 cd07266 HPCD_N_class_II N-term 99.6 1.2E-14 2.7E-19 103.0 12.9 105 51-170 4-118 (121)
69 cd08344 MhqB_like_N N-terminal 99.6 1.9E-14 4.2E-19 101.2 13.0 100 52-170 3-109 (112)
70 TIGR03213 23dbph12diox 2,3-dih 99.6 2.6E-14 5.7E-19 116.4 13.6 104 52-169 4-117 (286)
71 TIGR03211 catechol_2_3 catecho 99.5 1.1E-13 2.4E-18 113.4 13.4 111 50-168 144-263 (303)
72 TIGR03213 23dbph12diox 2,3-dih 99.5 1.9E-13 4.1E-18 111.4 14.3 110 52-169 143-262 (286)
73 TIGR02295 HpaD 3,4-dihydroxyph 99.5 2.3E-13 5E-18 110.9 13.8 105 51-170 4-115 (294)
74 TIGR02295 HpaD 3,4-dihydroxyph 99.5 3.3E-13 7.2E-18 109.9 13.7 109 52-169 137-255 (294)
75 KOG2944 Glyoxalase [Carbohydra 99.5 2.8E-13 6.1E-18 100.1 11.1 122 48-170 39-168 (170)
76 TIGR03211 catechol_2_3 catecho 99.5 5.6E-13 1.2E-17 109.2 13.8 102 52-170 5-118 (303)
77 PLN02300 lactoylglutathione ly 99.5 6.3E-13 1.4E-17 108.6 13.1 115 53-171 156-279 (286)
78 COG3565 Predicted dioxygenase 99.4 1.1E-12 2.3E-17 92.4 10.0 110 51-169 4-128 (138)
79 COG2514 Predicted ring-cleavag 99.4 4.1E-12 8.9E-17 101.5 12.4 110 52-170 11-126 (265)
80 PF13669 Glyoxalase_4: Glyoxal 99.4 1.2E-12 2.7E-17 92.0 8.5 92 54-147 2-95 (109)
81 cd06588 PhnB_like Escherichia 99.2 6.8E-10 1.5E-14 80.1 13.3 103 60-168 9-128 (128)
82 COG3324 Predicted enzyme relat 99.2 4.3E-10 9.3E-15 81.4 11.6 110 54-171 12-126 (127)
83 COG3607 Predicted lactoylgluta 99.1 2.8E-09 6E-14 76.2 10.3 116 52-171 4-128 (133)
84 COG2764 PhnB Uncharacterized p 98.9 6.8E-08 1.5E-12 70.9 14.3 108 59-170 8-131 (136)
85 COG0346 GloA Lactoylglutathion 98.9 2.3E-09 4.9E-14 74.8 6.2 118 52-169 3-138 (138)
86 cd07250 HPPD_C_like C-terminal 98.9 1.2E-08 2.7E-13 78.9 9.5 95 52-146 4-109 (191)
87 KOG2943 Predicted glyoxalase [ 98.8 3.3E-08 7.3E-13 78.0 7.9 112 54-170 20-143 (299)
88 TIGR01263 4HPPD 4-hydroxypheny 98.7 1.7E-07 3.7E-12 78.9 12.3 97 49-146 156-264 (353)
89 TIGR01263 4HPPD 4-hydroxypheny 98.7 2.7E-07 5.8E-12 77.7 12.3 93 53-146 4-98 (353)
90 PRK01037 trmD tRNA (guanine-N( 98.6 3.9E-07 8.6E-12 75.9 10.1 101 52-169 248-353 (357)
91 KOG2943 Predicted glyoxalase [ 98.5 2.3E-07 4.9E-12 73.4 6.3 107 54-170 152-270 (299)
92 PRK10148 hypothetical protein; 98.4 4.2E-05 9.2E-10 56.8 14.6 103 61-170 12-141 (147)
93 COG2514 Predicted ring-cleavag 98.2 1.1E-05 2.5E-10 64.8 9.5 105 42-168 158-264 (265)
94 PF13468 Glyoxalase_3: Glyoxal 98.2 5.2E-06 1.1E-10 63.0 7.0 91 54-144 3-101 (175)
95 PLN02875 4-hydroxyphenylpyruva 98.2 1.3E-05 2.8E-10 68.6 9.3 98 49-146 178-292 (398)
96 PF14506 CppA_N: CppA N-termin 97.9 0.00039 8.5E-09 49.7 11.8 108 54-171 3-115 (125)
97 PF06983 3-dmu-9_3-mt: 3-demet 97.0 0.051 1.1E-06 38.6 13.0 102 53-168 5-116 (116)
98 COG3185 4-hydroxyphenylpyruvat 97.0 0.0046 1E-07 51.7 8.4 90 56-146 174-271 (363)
99 PF13669 Glyoxalase_4: Glyoxal 96.9 0.0038 8.2E-08 43.3 6.3 50 122-171 1-56 (109)
100 PLN02875 4-hydroxyphenylpyruva 96.7 0.084 1.8E-06 45.4 13.9 118 53-170 2-151 (398)
101 KOG0638 4-hydroxyphenylpyruvat 96.7 0.0077 1.7E-07 49.9 7.1 98 46-147 13-118 (381)
102 PF15067 FAM124: FAM124 family 96.4 0.037 7.9E-07 44.0 9.4 96 56-167 133-235 (236)
103 PF14696 Glyoxalase_5: Hydroxy 96.2 0.061 1.3E-06 39.6 9.0 113 53-170 11-126 (139)
104 cd08353 Glo_EDI_BRP_like_7 Thi 94.0 0.33 7.1E-06 34.6 7.1 51 120-170 3-69 (142)
105 KOG0638 4-hydroxyphenylpyruvat 93.1 0.086 1.9E-06 43.8 3.0 85 61-146 190-288 (381)
106 PF13670 PepSY_2: Peptidase pr 91.3 0.9 1.9E-05 30.0 5.8 40 130-169 30-72 (83)
107 TIGR03645 glyox_marine lactoyl 90.6 1.2 2.6E-05 33.0 6.6 52 120-171 4-78 (162)
108 PF14507 CppA_C: CppA C-termin 90.6 0.65 1.4E-05 32.3 4.6 87 55-165 9-98 (101)
109 cd08352 Glo_EDI_BRP_like_1 Thi 90.4 2.5 5.4E-05 28.6 7.7 50 120-169 3-57 (125)
110 cd07242 Glo_EDI_BRP_like_6 Thi 89.8 1.8 4E-05 29.9 6.7 49 121-170 2-54 (128)
111 cd06587 Glo_EDI_BRP_like This 88.9 2.2 4.8E-05 27.7 6.3 47 123-170 1-50 (112)
112 COG3185 4-hydroxyphenylpyruvat 88.1 8 0.00017 32.8 10.1 102 54-162 25-142 (363)
113 cd07241 Glo_EDI_BRP_like_3 Thi 87.6 4.2 9.2E-05 27.6 7.3 50 121-170 2-56 (125)
114 cd08347 PcpA_C_like C-terminal 87.2 3.4 7.4E-05 30.5 6.9 50 121-170 2-53 (157)
115 cd07245 Glo_EDI_BRP_like_9 Thi 87.1 2.8 6E-05 27.6 6.0 49 122-170 2-52 (114)
116 cd08346 PcpA_N_like N-terminal 86.3 5.4 0.00012 27.0 7.2 50 121-170 2-60 (126)
117 cd08348 BphC2-C3-RGP6_C_like T 86.3 5.6 0.00012 27.7 7.4 50 121-170 2-54 (134)
118 cd07263 Glo_EDI_BRP_like_16 Th 85.7 4.8 0.0001 26.9 6.6 47 123-169 1-53 (119)
119 cd07233 Glyoxalase_I Glyoxalas 84.1 5.6 0.00012 26.9 6.4 48 122-169 2-57 (121)
120 cd08342 HPPD_N_like N-terminal 83.8 7.4 0.00016 27.6 7.1 47 122-169 2-51 (136)
121 cd07255 Glo_EDI_BRP_like_12 Th 83.2 8.1 0.00017 26.4 7.0 47 121-169 3-51 (125)
122 cd07235 MRD Mitomycin C resist 82.8 5.9 0.00013 27.1 6.1 25 122-146 2-26 (122)
123 cd07249 MMCE Methylmalonyl-CoA 82.4 6.9 0.00015 26.6 6.4 48 122-170 2-55 (128)
124 PLN03042 Lactoylglutathione ly 79.9 22 0.00048 27.2 8.9 29 118-146 25-54 (185)
125 TIGR03081 metmalonyl_epim meth 77.2 13 0.00028 25.3 6.4 49 121-170 2-55 (128)
126 cd07252 BphC1-RGP6_N_like N-te 76.3 19 0.00041 24.7 7.0 47 121-168 3-51 (120)
127 PRK11478 putative lyase; Provi 75.5 18 0.00038 24.8 6.7 50 120-169 6-60 (129)
128 cd07253 Glo_EDI_BRP_like_2 Thi 74.8 16 0.00035 24.4 6.3 29 120-148 3-32 (125)
129 cd08360 MhqB_like_C C-terminal 74.6 22 0.00047 24.9 7.1 49 120-169 3-55 (134)
130 cd04895 ACT_ACR_1 ACT domain-c 72.4 7.7 0.00017 25.2 3.8 36 131-166 15-56 (72)
131 cd08344 MhqB_like_N N-terminal 71.0 22 0.00049 23.9 6.3 28 120-147 2-29 (112)
132 COG3865 Uncharacterized protei 71.0 41 0.00088 25.1 12.2 97 60-169 14-123 (151)
133 cd07240 ED_TypeI_classII_N N-t 69.7 26 0.00057 23.3 6.4 38 121-160 3-41 (117)
134 cd07262 Glo_EDI_BRP_like_19 Th 68.7 28 0.00061 23.6 6.5 47 122-169 2-53 (123)
135 PF00903 Glyoxalase: Glyoxalas 68.0 22 0.00049 23.7 5.8 27 121-147 2-29 (128)
136 cd07237 BphC1-RGP6_C_like C-te 66.6 44 0.00095 24.2 7.4 50 120-169 9-67 (154)
137 cd04882 ACT_Bt0572_2 C-termina 66.1 14 0.00031 22.1 4.1 25 121-145 40-64 (65)
138 cd07239 BphC5-RK37_C_like C-te 64.4 41 0.00089 24.1 6.8 27 120-146 4-31 (144)
139 cd09012 Glo_EDI_BRP_like_24 Th 63.7 40 0.00088 22.9 6.5 25 122-146 2-26 (124)
140 PLN02367 lactoylglutathione ly 61.2 56 0.0012 26.2 7.5 40 119-158 74-117 (233)
141 cd07265 2_3_CTD_N N-terminal d 60.3 50 0.0011 22.3 6.5 29 120-148 4-33 (122)
142 cd08361 PpCmtC_N N-terminal do 60.3 47 0.001 22.9 6.4 47 120-168 6-54 (124)
143 cd07247 SgaA_N_like N-terminal 57.8 53 0.0011 21.7 6.6 27 122-148 2-29 (114)
144 cd08343 ED_TypeI_classII_C C-t 57.7 54 0.0012 22.6 6.3 48 122-169 1-53 (131)
145 cd08363 FosB FosB, a fosfomyci 57.6 59 0.0013 22.7 6.6 25 122-146 2-27 (131)
146 KOG2944 Glyoxalase [Carbohydra 57.0 6.7 0.00015 29.6 1.5 26 54-79 25-50 (170)
147 cd04897 ACT_ACR_3 ACT domain-c 56.9 40 0.00087 22.0 5.0 36 131-166 15-56 (75)
148 cd07257 THT_oxygenase_C The C- 56.6 51 0.0011 23.8 6.2 26 121-146 2-28 (153)
149 cd07266 HPCD_N_class_II N-term 55.2 62 0.0013 21.7 6.5 29 120-148 4-33 (121)
150 PF06185 YecM: YecM protein; 54.7 82 0.0018 24.4 7.1 71 54-129 37-114 (185)
151 cd08351 ChaP_like ChaP, an enz 54.2 67 0.0015 21.8 6.5 47 121-169 5-52 (123)
152 cd04883 ACT_AcuB C-terminal AC 54.0 37 0.00081 20.8 4.5 26 122-147 43-70 (72)
153 cd09013 BphC-JF8_N_like N-term 52.5 70 0.0015 21.6 7.2 29 120-148 6-35 (121)
154 cd07251 Glo_EDI_BRP_like_10 Th 51.4 67 0.0015 21.3 5.8 44 124-169 2-46 (121)
155 cd08358 Glo_EDI_BRP_like_21 Th 51.3 87 0.0019 22.3 7.5 26 121-146 3-29 (127)
156 cd04906 ACT_ThrD-I_1 First of 50.0 31 0.00066 22.6 3.7 26 122-147 42-71 (85)
157 PRK06704 RNA polymerase factor 49.8 13 0.00028 29.5 2.2 41 125-167 183-225 (228)
158 PF14133 DUF4300: Domain of un 49.3 30 0.00066 28.0 4.2 35 131-165 150-184 (250)
159 PRK04101 fosfomycin resistance 47.8 95 0.0021 21.7 6.9 27 120-146 4-31 (139)
160 PRK09437 bcp thioredoxin-depen 47.1 69 0.0015 22.9 5.6 17 153-169 121-137 (154)
161 cd03012 TlpA_like_DipZ_like Tl 45.7 87 0.0019 21.6 5.8 40 130-169 72-123 (126)
162 cd03017 PRX_BCP Peroxiredoxin 44.2 87 0.0019 21.7 5.6 17 153-169 111-127 (140)
163 cd07267 THT_Oxygenase_N N-term 43.3 99 0.0021 20.6 6.4 28 120-147 3-30 (113)
164 PF07063 DUF1338: Domain of un 42.6 26 0.00056 29.2 2.9 28 119-146 183-216 (302)
165 PRK10382 alkyl hydroperoxide r 42.1 1.3E+02 0.0028 23.0 6.6 17 153-169 120-136 (187)
166 KOG4657 Uncharacterized conser 42.0 17 0.00037 29.0 1.7 19 61-79 146-164 (246)
167 PF10649 DUF2478: Protein of u 41.6 88 0.0019 23.5 5.4 41 131-171 16-65 (159)
168 cd04908 ACT_Bt0572_1 N-termina 41.1 61 0.0013 19.8 3.9 25 122-146 41-65 (66)
169 PF05593 RHS_repeat: RHS Repea 41.0 63 0.0014 17.7 3.6 23 149-171 13-35 (38)
170 TIGR01643 YD_repeat_2x YD repe 40.6 64 0.0014 17.7 3.6 23 149-171 13-35 (42)
171 PF00578 AhpC-TSA: AhpC/TSA fa 39.2 40 0.00088 22.8 3.2 45 121-165 60-122 (124)
172 PRK11700 hypothetical protein; 39.0 1.8E+02 0.004 22.5 8.1 71 54-129 42-119 (187)
173 cd09014 BphC-JF8_C_like C-term 38.6 1.6E+02 0.0034 21.6 6.7 27 120-146 6-33 (166)
174 PF07494 Reg_prop: Two compone 38.4 37 0.00081 16.7 2.1 12 154-165 8-19 (24)
175 COG1225 Bcp Peroxiredoxin [Pos 37.4 1.5E+02 0.0033 22.2 6.1 48 121-168 65-136 (157)
176 COG4747 ACT domain-containing 36.9 38 0.00082 24.5 2.6 25 122-146 110-134 (142)
177 cd04885 ACT_ThrD-I Tandem C-te 34.9 67 0.0015 19.8 3.4 26 121-146 39-67 (68)
178 cd07256 HPCD_C_class_II C-term 32.7 78 0.0017 23.0 4.0 27 120-146 3-30 (161)
179 PF03698 UPF0180: Uncharacteri 32.5 1.5E+02 0.0033 19.6 5.0 42 126-167 4-51 (80)
180 cd04886 ACT_ThrD-II-like C-ter 30.6 1.2E+02 0.0026 18.0 4.1 25 122-146 45-72 (73)
181 PRK09732 hypothetical protein; 30.4 1.7E+02 0.0037 21.3 5.3 34 131-172 16-49 (134)
182 cd03008 TryX_like_RdCVF Trypar 30.3 2.2E+02 0.0048 20.8 6.0 45 122-166 67-127 (146)
183 KOG2465 Uncharacterized conser 29.8 77 0.0017 26.6 3.7 19 120-138 168-186 (390)
184 PRK15412 thiol:disulfide inter 29.4 2E+02 0.0044 21.5 5.9 47 122-168 99-159 (185)
185 PRK03094 hypothetical protein; 29.2 1.8E+02 0.0038 19.4 5.2 41 127-167 5-51 (80)
186 PF02208 Sorb: Sorbin homologo 28.5 20 0.00044 21.1 0.1 19 55-73 15-33 (47)
187 cd02966 TlpA_like_family TlpA- 28.5 1.6E+02 0.0035 18.7 6.5 48 121-168 53-114 (116)
188 cd07268 Glo_EDI_BRP_like_4 Thi 27.1 2.7E+02 0.0058 20.8 9.1 71 54-129 4-81 (149)
189 PF06923 GutM: Glucitol operon 26.5 2.3E+02 0.0049 19.8 5.6 43 128-171 23-71 (109)
190 cd04909 ACT_PDH-BS C-terminal 26.4 63 0.0014 19.7 2.2 23 123-145 44-69 (69)
191 PF03975 CheD: CheD chemotacti 26.4 1.5E+02 0.0032 20.7 4.3 36 129-164 64-102 (114)
192 PF14907 NTP_transf_5: Unchara 26.2 3E+02 0.0064 21.2 6.5 47 123-170 96-144 (249)
193 cd07268 Glo_EDI_BRP_like_4 Thi 26.0 2.8E+02 0.0061 20.7 5.9 27 122-148 3-32 (149)
194 PF03432 Relaxase: Relaxase/Mo 25.8 1.4E+02 0.0031 23.0 4.6 36 127-162 183-218 (242)
195 COG3254 Uncharacterized conser 25.6 2.1E+02 0.0045 20.1 4.7 34 131-171 26-59 (105)
196 COG3603 Uncharacterized conser 25.6 76 0.0016 22.9 2.6 25 122-146 103-127 (128)
197 PF09142 TruB_C: tRNA Pseudour 25.2 1.4E+02 0.003 18.1 3.5 39 131-171 6-45 (56)
198 PF13905 Thioredoxin_8: Thiore 24.8 2E+02 0.0042 18.4 4.8 44 121-164 36-95 (95)
199 PF00585 Thr_dehydrat_C: C-ter 24.5 83 0.0018 21.0 2.6 28 120-147 50-80 (91)
200 PF13986 DUF4224: Domain of un 24.0 1.6E+02 0.0035 17.2 3.6 20 132-151 18-37 (47)
201 PF11080 DUF2622: Protein of u 23.8 1.2E+02 0.0026 20.9 3.2 29 130-168 22-50 (96)
202 PF00379 Chitin_bind_4: Insect 23.5 1.1E+02 0.0023 18.0 2.7 15 154-168 30-44 (52)
203 PRK13490 chemoreceptor glutami 23.4 1.8E+02 0.0039 21.9 4.5 39 128-167 111-152 (162)
204 PF07166 DUF1398: Protein of u 23.4 1.8E+02 0.0039 21.0 4.3 36 130-166 85-121 (125)
205 PRK13495 chemoreceptor glutami 23.1 1.8E+02 0.004 21.7 4.5 36 129-164 105-143 (159)
206 cd02969 PRX_like1 Peroxiredoxi 23.0 2.5E+02 0.0054 20.4 5.2 37 131-167 77-125 (171)
207 PF10706 Aminoglyc_resit: Amin 22.9 2.4E+02 0.0053 21.5 5.0 25 123-147 46-70 (174)
208 PRK13498 chemoreceptor glutami 22.8 1.7E+02 0.0037 22.1 4.3 36 128-163 114-152 (167)
209 cd08354 Glo_EDI_BRP_like_13 Th 22.7 2.3E+02 0.0051 18.6 7.4 47 122-169 2-49 (122)
210 PRK13494 chemoreceptor glutami 22.6 1.9E+02 0.0041 21.8 4.5 35 129-163 114-151 (163)
211 PHA00450 host dGTPase inhibito 22.3 2E+02 0.0043 19.2 3.9 39 130-168 11-56 (85)
212 PRK11700 hypothetical protein; 22.0 3.6E+02 0.0078 20.9 5.9 49 121-169 40-97 (187)
213 PF11823 DUF3343: Protein of u 21.5 1.9E+02 0.0041 18.2 3.8 24 123-146 42-67 (73)
214 PHA02097 hypothetical protein 21.4 85 0.0018 19.1 1.9 14 156-169 45-58 (59)
215 PF14527 LAGLIDADG_WhiA: WhiA 21.1 2E+02 0.0044 19.3 4.0 40 122-161 22-65 (93)
216 COG3193 GlcG Uncharacterized p 20.7 3.3E+02 0.0072 20.1 5.3 33 131-171 17-49 (141)
217 PTZ00056 glutathione peroxidas 20.5 3.9E+02 0.0086 20.3 6.3 16 154-169 147-162 (199)
218 PF13176 TPR_7: Tetratricopept 20.4 62 0.0013 17.2 1.1 18 59-76 12-29 (36)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.81 E-value=1.4e-18 Score=124.63 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=81.4
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCC-CCcceEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDK-LPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~-~~~~~~~~~~-g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
..|+.+.|+|++++++||+++|||++..+..... ..+. ..+.. ++..+++++.+.+......+. ..+..|+||.|+
T Consensus 7 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~g~~hi~f~v~ 84 (129)
T PRK11478 7 VHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNGQYVIELFSFPFPPERPSRPE-ACGLRHLAFSVD 84 (129)
T ss_pred ecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCCCcEEEEEEecCCCCCCCCCC-CCceeEEEEEeC
Confidence 3689999999999999999999999864211000 1111 11233 344677766543221111112 234679999999
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 130 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
|+++++++|+++|+++... .+|.+.+||+|||||.|||+|
T Consensus 85 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 85 DIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999998632 367788999999999999987
No 2
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=3.9e-18 Score=124.61 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=82.7
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCC------CC-----cceEEEEe--CCeEEEEEecCCCCCCC---CCC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDK------LP-----YRGAWLWV--GAEMIHLMELPNPDPLS---GRP 115 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~------~~-----~~~~~~~~--g~~~l~L~~~~~~~~~~---~~p 115 (172)
..|+.+.|+|++++++||++ |||+...+..... .+ ....++.. |+..++|++...+.... ...
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~ 82 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAP 82 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCC
Confidence 46899999999999999998 9998754221000 00 11123332 34578887654322111 111
Q ss_pred CCCCCcceEEEEECCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 116 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 116 ~~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
....+..|+||.|+|+++++++|+++|+++... .++.+.+||+|||||.|||+|.
T Consensus 83 ~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 83 VNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 223456899999999999999999999998743 3677889999999999999985
No 3
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=2.4e-18 Score=122.05 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~-- 129 (172)
.|+.|.|+|++++++||+++|||+..........++...|+.++ +..++|++.+...+.. ......+..|+||.|+
T Consensus 3 ~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~~~ 81 (125)
T cd07241 3 EHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVGSK 81 (125)
T ss_pred eEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECCCH
Confidence 57899999999999999999999975321111123344566664 3467887644221111 1112235689999996
Q ss_pred -CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEE
Q 030725 130 -DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 130 -dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~ 168 (172)
|+++++++|+++|+++... .+|.+.++|+|||||.|||.
T Consensus 82 ~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 82 EAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred HHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 4799999999999998742 35556678999999999984
No 4
>PRK10291 glyoxalase I; Provisional
Probab=99.79 E-value=1.9e-18 Score=124.67 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=75.8
Q ss_pred eecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 030725 57 VEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 132 (172)
Q Consensus 57 i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~----~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld 132 (172)
|.|+|++++++||+++|||+...+.......+..+|+..++. .+++.... + ......++..+|+||.|+|++
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~g~~~~hlaf~V~d~~ 77 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW-G---VDKYELGTAYGHIALSVDNAA 77 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecC-C---CCCCcCCCCeeEEEEEeCCHH
Confidence 567899999999999999998653321122344556555432 23332211 1 111112345789999999999
Q ss_pred HHHHHHHHCCCeEEec----CCC-ceEEEEECCCCCEEEEEee
Q 030725 133 KLKMILDKAGISYTLS----KSG-RPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 133 ~~~~~L~~~Gv~i~~~----~~g-~~~~y~~DPDGn~iEl~e~ 170 (172)
+++++|+++|+++... .++ .+.+||+|||||.|||++.
T Consensus 78 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 78 EACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred HHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 9999999999988632 244 3567899999999999985
No 5
>PLN02367 lactoylglutathione lyase
Probab=99.79 E-value=6.7e-18 Score=133.61 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=83.1
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe------------------C-CeEEEEEecCCCCC--
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV------------------G-AEMIHLMELPNPDP-- 110 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~------------------g-~~~l~L~~~~~~~~-- 110 (172)
..|.++.|+|+++|++||+++|||++..+.......+...|+.. + +..|+|+...+.+.
T Consensus 76 ~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~~ 155 (233)
T PLN02367 76 MQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESDP 155 (233)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCccc
Confidence 45789999999999999999999998753321122334444432 1 23677765432221
Q ss_pred C-----CCCCCCCCCcceEEEEECCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCEEEEEeec
Q 030725 111 L-----SGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 111 ~-----~~~p~~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~~---~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
. .+... ..+.+|+||.|+|+++++++|+++|+++...+ .+.+.+||+|||||.|||+|..
T Consensus 156 ~~~~y~~gn~~-p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 156 DFKGYHNGNSE-PRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred cchhcccCCCC-CCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 0 01111 13578999999999999999999999997432 2245789999999999999863
No 6
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.78 E-value=4.5e-18 Score=124.20 Aligned_cols=117 Identities=12% Similarity=-0.032 Sum_probs=82.7
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCC-CC-CCCCCCCcceEEEEECC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL-SG-RPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~-~~-~p~~~g~~~Hi~f~V~d 130 (172)
.|+.|.|+|++++++||+++|||+....... ......++..|+..+.|......... .. ....+.+..|+||.|+|
T Consensus 2 ~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~--~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~D 79 (136)
T cd08342 2 DHVEFYVGNAKQLASWFSTKLGFEPVAYHGS--EDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDD 79 (136)
T ss_pred eEEEEEeCCHHHHHHHHHHhcCCeEEEecCC--CceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCC
Confidence 4788999999999999999999998753221 11122334445555665432211110 00 01123456899999999
Q ss_pred HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEeec
Q 030725 131 VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+++.+++|+++|+++..+ .+|.+.+||+|||||.|||+|..
T Consensus 80 vda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 80 AAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred HHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 999999999999999732 46778999999999999999964
No 7
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.78 E-value=1.3e-17 Score=128.59 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=82.0
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe-------------------CCeEEEEEecCCCCC--
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNPDP-- 110 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~-------------------g~~~l~L~~~~~~~~-- 110 (172)
..|..|.|.|+++|++||+++|||++..+.......+...++.. ++..|+|+.......
T Consensus 28 ~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~p 107 (185)
T PLN03042 28 MQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESDP 107 (185)
T ss_pred EEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcccc
Confidence 34678999999999999999999998754221112223333321 223677765432111
Q ss_pred ----CCCCCCCCCCcceEEEEECCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCEEEEEeecC
Q 030725 111 ----LSGRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVDG 172 (172)
Q Consensus 111 ----~~~~p~~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~~---~g~~~~y~~DPDGn~iEl~e~~~ 172 (172)
....+....+..|+||.|+|+++++++|+++|+++...+ .+.+.+||+|||||.|||++..+
T Consensus 108 ~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 108 EFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred cccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECCC
Confidence 000011123578999999999999999999999987432 23456889999999999998653
No 8
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.78 E-value=6.2e-18 Score=117.01 Aligned_cols=109 Identities=36% Similarity=0.638 Sum_probs=82.7
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~-~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
.|+.+.++|++++++||+++||++... ++. ......|+..++. .+++...+..... +...++..|++|.|+|+
T Consensus 2 ~Hi~l~v~d~~~~~~FY~~~lG~~~~~-~~~--~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d~ 75 (114)
T cd07245 2 DHVALRVPDLEASRAFYTDVLGLEEGP-RPP--FLFPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDDL 75 (114)
T ss_pred CeEEEecCCHHHHHHHHHHccCCcccC-cCC--CCCCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCCH
Confidence 478899999999999999999998864 221 1234578887665 6787655432211 12234467999999999
Q ss_pred HHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEE
Q 030725 132 SKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl 167 (172)
++++++++++|+++... .++.+++|+.|||||.|||
T Consensus 76 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 76 DAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 99999999999998743 2566789999999999996
No 9
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.3e-17 Score=117.89 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=80.8
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~-g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d 130 (172)
..|+.+.|.|++++++||+++||++............-..++.. ++..++++..+........+. ..+.+|++|.|+|
T Consensus 4 ~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~-~~g~~h~~~~v~d 82 (125)
T cd08352 4 IHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPE-ACGLRHLAFSVED 82 (125)
T ss_pred cceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCc-CCCceEEEEEeCC
Confidence 46889999999999999999999998653211111100112333 445677665432211111122 2356899999999
Q ss_pred HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 131 VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
++++.++|+++|+.+... .+|.+.+|++||+||.|||+|
T Consensus 83 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 83 IEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred HHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 999999999999998642 456678999999999999986
No 10
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.78 E-value=1.2e-17 Score=125.86 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=83.1
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeee----cCC----CC----------CCcceEEEEeCC-eEEEEEecCCCCCCC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEA----RPH----DK----------LPYRGAWLWVGA-EMIHLMELPNPDPLS 112 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~----~~~----~~----------~~~~~~~~~~g~-~~l~L~~~~~~~~~~ 112 (172)
..|++|.|+|+++|++||+++|||+...+ .+. +. .....+++..++ ..++|++...+....
T Consensus 5 i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~~~ 84 (162)
T TIGR03645 5 FSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQENPE 84 (162)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCCCC
Confidence 46899999999999999999999987521 010 00 012234455443 468888776432221
Q ss_pred CCC-CCCCCcceEEEEECCHHHHHHHHHHCCCeEEec------C--CCceEEEEECCCCCEEEEEeec
Q 030725 113 GRP-EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS------K--SGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 113 ~~p-~~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~------~--~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
..+ ....+..|+||.|+|+++++++|+++|+.+... . .+.+.+||+|||||.|||++..
T Consensus 85 ~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 85 DNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred cccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 111 113457899999999999999999999876421 1 1247899999999999999863
No 11
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.77 E-value=6.3e-18 Score=120.63 Aligned_cols=117 Identities=15% Similarity=0.262 Sum_probs=82.8
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCcceEEEEECC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~--~p~~~g~~~Hi~f~V~d 130 (172)
.|+.+.|+|++++++||+++||++...............++..++..++|+.......... .....++..|+||.|+|
T Consensus 3 ~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d 82 (128)
T TIGR03081 3 DHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEVDD 82 (128)
T ss_pred CEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEcCC
Confidence 5788999999999999999999998642211112234456666777788865322111100 01113345799999999
Q ss_pred HHHHHHHHHHCCCeEEec-----CCCceEEEE--ECCCCCEEEEEe
Q 030725 131 VSKLKMILDKAGISYTLS-----KSGRPAIFT--RDPDANALEFTQ 169 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~-----~~g~~~~y~--~DPDGn~iEl~e 169 (172)
+++++++|+++|+++..+ .+|.+.+|+ +|||||.||+.|
T Consensus 83 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 83 IEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred HHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 999999999999998632 356677788 799999999975
No 12
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.4e-17 Score=118.56 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=74.3
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
.+++.+.|+|+++|.+||+++||+++..+.+ . ...+. ++..+++...............++...|++|.|+|+
T Consensus 3 ~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~-----~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dv 75 (120)
T cd09011 3 FKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG-----E-NVTFE-GGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDF 75 (120)
T ss_pred EEEEEEEECCHHHHHHHHHHhcCCEEeeccC-----c-eEEEe-ccceeccchhhhccCCcccccccCCceEEEEEehhh
Confidence 3567889999999999999999999864211 1 11222 222232211100000001111223457999999999
Q ss_pred HHHHHHHHHCCC-eEEe----cCCCceEEEEECCCCCEEEEEee
Q 030725 132 SKLKMILDKAGI-SYTL----SKSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 132 d~~~~~L~~~Gv-~i~~----~~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++++|+++|+ ++.. ..+|.+.+||+|||||.|||.+.
T Consensus 76 d~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 76 DAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 999999999985 5652 25788999999999999999874
No 13
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=6.1e-17 Score=115.27 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=78.3
Q ss_pred eeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHH
Q 030725 56 SVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 135 (172)
Q Consensus 56 ~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld~~~ 135 (172)
.+.++|++++++||+++||+++....+........+.+..++..+.+................+...|++|.|+|+++++
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~~ 83 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAHY 83 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHHH
Confidence 45678999999999999999997533211111112345666665666433211110000011234579999999999999
Q ss_pred HHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 136 MILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 136 ~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
++|+++|+++..+ .+|.+.++|+|||||.|+|.+
T Consensus 84 ~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 84 ERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 9999999998733 478888999999999999976
No 14
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.76 E-value=3.5e-17 Score=115.64 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=79.5
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~----~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
.|+.+.++|++++.+||+++||++.....+.........|+..++ ..+++........ ....+.+..|++|.|
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~v 78 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFAV 78 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEEe
Confidence 478899999999999999999999865322111223345555433 3455543221111 111123468999999
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEE
Q 030725 129 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~ 168 (172)
+|+++++++|+++|+++... ..+.+.+||+|||||+|||+
T Consensus 79 ~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 79 DDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred CCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 99999999999999998744 24567889999999999985
No 15
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.76 E-value=2.9e-17 Score=119.24 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=80.1
Q ss_pred EEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCC-CcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 51 TKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 51 ~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
...|+.+.|+|+++|++||+++|||+...+...... .....|+..++..+.+..... +. ..+.+|+||.|+
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-------~~-~~~~~Hiaf~v~ 75 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDS-------LQ-ERTYNHIAFKIS 75 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCC-------CC-CCCceEEEEEcC
Confidence 356899999999999999999999987643211001 111234555666666653221 11 124689999998
Q ss_pred --CHHHHHHHHHHCCCeEEec---C-CCceEEEEECCCCCEEEEEee
Q 030725 130 --DVSKLKMILDKAGISYTLS---K-SGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 --dld~~~~~L~~~Gv~i~~~---~-~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+++++++|+++|+++... . ++.+++||+|||||.|||...
T Consensus 76 ~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 76 DSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred HHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 7999999999999998743 2 245799999999999999864
No 16
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.76 E-value=5.2e-17 Score=114.07 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=79.9
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
+|+.+.|+|++++++||+++||++...... ......++..++ ..++++...... + ..+...|++|.|+|+
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~f~v~di 72 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMGD---GGGDYAVFSTGGGAVGGLMKAPEPA-----A-GSPPGWLVYFAVDDV 72 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeeccC---CCCceEEEEeCCccEEEEecCCCCC-----C-CCCCeEEEEEEeCCH
Confidence 588999999999999999999999865321 112233455554 345555443221 1 123457999999999
Q ss_pred HHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 132 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
++++++|+++|+++..+ .++.+.+||+|||||.|||+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 99999999999998733 346688999999999999986
No 17
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.76 E-value=1.9e-17 Score=120.36 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=80.6
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--C
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--D 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~--d 130 (172)
.|+.+.|+|++++++||+++||+++....+ ...++..++..+.+...+.. + .....++.+|+||.|+ |
T Consensus 2 ~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~-~---~~~~~~~~~hiaf~v~~~d 71 (131)
T cd08363 2 NHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDI-P---RNEIRQSYTHIAFTIEDSE 71 (131)
T ss_pred ceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCC-C---cCCcCccceEEEEEecHHH
Confidence 478999999999999999999999864211 23456666666666443311 1 1111235689999998 4
Q ss_pred HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 131 VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+++++++|+++|+++... .++.+.+||+|||||.|||.+.
T Consensus 72 ld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 72 FDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecC
Confidence 999999999999998632 2466899999999999999875
No 18
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=4.5e-17 Score=119.29 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=81.1
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~-- 129 (172)
..|+.+.|+|++++++||+++||+++... . ...+|+..++..+.+...+.. ......++.+|++|.++
T Consensus 5 i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~-~-----~~~~~~~~~g~~l~l~~~~~~----~~~~~~~~~~hiaf~v~~~ 74 (139)
T PRK04101 5 INHICFSVSNLEKSIEFYEKVLGAKLLVK-G-----RKTAYFDLNGLWIALNEEKDI----PRNEIHQSYTHIAFSIEEE 74 (139)
T ss_pred EEEEEEEecCHHHHHHHHHhccCCEEEee-c-----CeeEEEecCCeEEEeeccCCC----CCccCCCCeeEEEEEecHH
Confidence 46889999999999999999999998742 1 124566666666655332211 11111234579999998
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 130 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+++++++|+++|+++... .++.+++||+|||||.|||.+.
T Consensus 75 dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 75 DFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred HHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999999998632 3567899999999999999864
No 19
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=6.7e-17 Score=113.09 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=78.1
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-----CeEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-----AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-----~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
|+++.+.|++++++||+++|||++....+. .. ...|+.++ +..+++...+..... .+...++..|++|.|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~v 75 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPM-GG--GFRWVTVAPPGSPETSLVLAPPANPAAM--SGLQPGGTPGLVLAT 75 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeecc-CC--CcEEEEEeCCCCCeeEEEEeCCCCcccc--ccccCCCceEEEEEe
Confidence 578899999999999999999998763221 11 22354442 224555433322111 112234567999999
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEe
Q 030725 129 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e 169 (172)
+|+++++++|+++|+++... ..+.+.+|++|||||.|||+|
T Consensus 76 ~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 76 DDIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred hHHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 99999999999999998743 334578999999999999975
No 20
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.75 E-value=1.5e-16 Score=112.45 Aligned_cols=113 Identities=18% Similarity=0.028 Sum_probs=79.8
Q ss_pred eeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHH
Q 030725 55 MSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 134 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld~~ 134 (172)
..+.++|++++.+||+++||++................+..++..+.+........ . .....+...|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG-S-PASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC-C-CCCCCCceEEEEEEeCCHHHH
Confidence 34677899999999999999998753321111112234566776776654321111 0 101223457999999999999
Q ss_pred HHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 135 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 135 ~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
++++.++|+++..+ .+|.+.++++|||||.|||.+
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999998632 578889999999999999986
No 21
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.74 E-value=6.8e-17 Score=119.34 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=76.2
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCC-cceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d 130 (172)
..|+.+.|+|++++.+||+++|||++.......... ..+.|+..+.. .|.+.... .+ .++.+|+||.|+|
T Consensus 7 l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~------~~--~~~~~Hiaf~v~d 77 (143)
T cd07243 7 LDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVG------GP--DGKLHHFSFFLES 77 (143)
T ss_pred eCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEec------CC--CCCceEEEEEcCC
Confidence 468999999999999999999999975432111111 12456654432 33332211 01 2356899999999
Q ss_pred HHH---HHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEe
Q 030725 131 VSK---LKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 131 ld~---~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e 169 (172)
+++ +.++|+++|+++... .++.+++||+|||||.|||+.
T Consensus 78 ~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 78 WEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred HHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 887 568999999998632 134578999999999999965
No 22
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.74 E-value=7.8e-17 Score=114.96 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=76.1
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--- 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~--- 129 (172)
+++.+.|+|+++|++||+++|||+... ++ .....|+..++..+.+.-.+.+ ..+..|++|.++
T Consensus 4 ~~v~l~v~Dl~~s~~FY~~~LG~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~~~~ 69 (120)
T cd07252 4 GYLGVESSDLDAWRRFATDVLGLQVGD-RP----EDGALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVADEA 69 (120)
T ss_pred cEEEEEeCCHHHHHHHHHhccCceecc-CC----CCCeEEEEccCCceEEEEEeCC---------CCceeEEEEEECCHH
Confidence 578899999999999999999999864 21 1134677665443333222111 123579999997
Q ss_pred CHHHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEEee
Q 030725 130 DVSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+++++++|+++|+++... ..+.+.+||+|||||.||++.-
T Consensus 70 dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 70 ALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 4888999999999999742 2344789999999999999863
No 23
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.74 E-value=8.9e-17 Score=113.68 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=76.4
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC--eEEEEEecCCCCCC-CCCCCCCCCcceEEEEEC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPL-SGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~--~~l~L~~~~~~~~~-~~~p~~~g~~~Hi~f~V~ 129 (172)
.+..|.++|+++|++||+++|||+.....+ ....+..++ ..+.++........ ...+. .+...|++|.|+
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 75 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQF-QGQGLILNFEVD 75 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhccc-CCceEEEEEEEC
Confidence 356788899999999999999999875211 112233333 34555432211110 01111 233359999999
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 130 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
|+++++++|+++|+++... .+|.+.++|+|||||.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999999999987633 467789999999999999986
No 24
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.74 E-value=1.3e-16 Score=112.77 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=80.8
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC-H
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-V 131 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d-l 131 (172)
.|+.+.+.|++++++||+++||++.....+ . ....++..++..+++.......... ......+..|++|.+++ +
T Consensus 5 ~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~hi~~~~~~~~ 79 (125)
T cd07253 5 DHVVLTVADIEATLDFYTRVLGMEVVRFGE--E--VGRKALRFGSQKINLHPVGGEFEPA-AGSPGPGSDDLCLITEPPI 79 (125)
T ss_pred ceEEEEecCHHHHHHHHHHHhCceeecccc--c--CCceEEEeCCEEEEEecCCCccCcC-ccCCCCCCceEEEEecccH
Confidence 578899999999999999999999875321 1 1234566666667765433221111 11122346899999975 9
Q ss_pred HHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEEee
Q 030725 132 SKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++++|+++|+++... .++.+++||+|||||.||+.+.
T Consensus 80 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 80 DELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred HHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 99999999999988632 1235789999999999999873
No 25
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=7e-17 Score=121.25 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=80.4
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC---CeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g---~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
.|+.|.|+|++++++||+++|||++....+ ....|+..+ +..++++..+... ...+. .++..|+||.|+
T Consensus 3 ~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~-~~~l~Hiaf~v~ 74 (157)
T cd08347 3 HGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQP--RGRPG-AGTVHHVAFRVP 74 (157)
T ss_pred ccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCC--CCccc-CCceEEEEEECC
Confidence 578999999999999999999999875321 123344443 3467776643111 11111 245689999999
Q ss_pred C---HHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEEeec
Q 030725 130 D---VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 130 d---ld~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
| +++++++|+++|+.+... ..+.+++||+|||||.|||++..
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 8 899999999999986532 33457899999999999999753
No 26
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.74 E-value=8.8e-17 Score=114.47 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=77.4
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 133 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld~ 133 (172)
...+.|+|+++|++||++ |||+.....+ . .-.++..++..++|...+... +. ....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~---~--~~~~~~~~~~~l~l~~~~~~~-----~~--~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQA---A--GYMILRRGDLELHFFAHPDLD-----PA--TSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCC---C--CEEEEEcCCEEEEEEecCcCC-----CC--CCcceEEEEeCCHHH
Confidence 457788999999999999 9999875322 1 223355566678886543111 11 123589999999999
Q ss_pred HHHHHHHCCCeEE--------ec---CCCceEEEEECCCCCEEEEEee
Q 030725 134 LKMILDKAGISYT--------LS---KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 134 ~~~~L~~~Gv~i~--------~~---~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++|+++|+++. .. .+|.+.+||+|||||.|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999999999742 11 3788899999999999999985
No 27
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.73 E-value=8.1e-17 Score=112.76 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=77.1
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--CH
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 131 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~--dl 131 (172)
|+.+.|+|++++++||+++||++.... . ....|+..++..+.+...+.. +...+...|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYS-S-----SKEAYFELAGLWICLMEEDSL------QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeec-c-----CceeEEEecCeEEEeccCCCc------CCCCCCccEEEEEcCHHHH
Confidence 577889999999999999999998642 1 124566666555554332211 011234589999994 79
Q ss_pred HHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 132 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++++|+++|+++... .++.+.+|++|||||.|||..-
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 99999999999998642 2356789999999999999863
No 28
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=2.4e-16 Score=113.28 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=77.0
Q ss_pred eEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 50 TTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 50 ~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
.-..++.+.|+|+++|.+||+++|||++..+ . . ...|+..++....+. .... . ....|+||+|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~-~----~-~~~~l~~~~~~~~i~-l~~~-------~--~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAER-T----A-KATYFRSDARDHTLV-YIEG-------D--PAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccC-C----C-CeEEEEcCCccEEEE-EEeC-------C--CceEEEEEEEC
Confidence 3456899999999999999999999998642 1 1 246776654322221 1110 0 12479999997
Q ss_pred C---HHHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEEeec
Q 030725 130 D---VSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 130 d---ld~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
| +++++++|+++|+++... ..+.+.+||+|||||.||++..+
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 5 999999999999998642 24456789999999999998753
No 29
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.73 E-value=1.1e-16 Score=118.69 Aligned_cols=118 Identities=21% Similarity=0.220 Sum_probs=77.0
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCcceEEEEECC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~-~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d 130 (172)
..|+.+.|.|++++++||+++|||+...........+...++..++. ....++........ ....+.+..|++|.|+|
T Consensus 18 i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~g~~hi~f~v~d 96 (150)
T TIGR00068 18 LLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTE-KYDLGNGFGHIAIGVDD 96 (150)
T ss_pred EEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCC-cccCCCceeEEEEecCC
Confidence 45889999999999999999999998653221111122234443321 11112221110010 11112346799999999
Q ss_pred HHHHHHHHHHCCCeEEec----C-CCceEEEEECCCCCEEEEEee
Q 030725 131 VSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~----~-~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+++++++|.++|+++... . .+.+.+||+|||||.|||++.
T Consensus 97 ld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 141 (150)
T TIGR00068 97 VYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR 141 (150)
T ss_pred HHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence 999999999999987632 2 334678999999999999985
No 30
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.73 E-value=2.2e-16 Score=111.46 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=76.7
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
..|+.+.|+|+++|++||++ |||+.... . . ...|+..++...+++..... ..++..|++|.|+|.
T Consensus 4 l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~af~v~~~ 68 (113)
T cd07267 4 IAHVRFEHPDLDKAERFLTD-FGLEVAAR-T---D--DELYYRGYGTDPFVYVARKG--------EKARFVGAAFEAASR 68 (113)
T ss_pred EEEEEEccCCHHHHHHHHHH-cCCEEEEe-c---C--CeEEEecCCCccEEEEcccC--------CcCcccEEEEEECCH
Confidence 46789999999999999999 99988642 2 1 34677654333333322210 113467999999999
Q ss_pred HHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEe
Q 030725 132 SKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e 169 (172)
+++.+.+++.|+.+... +++.+.+||+|||||.|||+.
T Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 69 ADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred HHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999987632 466789999999999999975
No 31
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.72 E-value=2.6e-16 Score=109.61 Aligned_cols=105 Identities=25% Similarity=0.311 Sum_probs=77.6
Q ss_pred eeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHHH
Q 030725 56 SVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 135 (172)
Q Consensus 56 ~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld~~~ 135 (172)
.+.|+|++++++||+++|||+.....+ .....++..++..++|........ + ......|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP----EPGYAFLSRGGAQLMLSEHDGDEP----V-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC----CCcEEEEEeCCEEEEEeccCCCCC----C-CCCCcEEEEEEeCCHHHHH
Confidence 467899999999999999999875321 112344556666777765442211 0 1223469999999999999
Q ss_pred HHHHHCCCe-EEec----CCCceEEEEECCCCCEEEEEe
Q 030725 136 MILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 136 ~~L~~~Gv~-i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
++|+++|+. +... .+|.+.+||+|||||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 4322 467789999999999999986
No 32
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.7e-16 Score=111.81 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=77.0
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecC--CC-CCCC---CCCCCCCCcceEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELP--NP-DPLS---GRPEHGGRDRHTCI 126 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~--~~-~~~~---~~p~~~g~~~Hi~f 126 (172)
.++.+.|+|++++.+||+++|||+.....+ ...+ ..+..++..+.+.... .. .+.. ..+...+...|++|
T Consensus 2 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
T cd07264 2 GYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAF 77 (125)
T ss_pred ceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEE
Confidence 367888999999999999999999864222 1111 1123344444443221 00 0000 11111223469999
Q ss_pred EECCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 127 AIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 127 ~V~dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.|+|+++++++++++|+++..+ .+|.+.++|+|||||.||+.++
T Consensus 78 ~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 78 VTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 9999999999999999988632 5777889999999999999874
No 33
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=2.8e-16 Score=111.32 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=78.7
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCC-CcceEEEEe----CCeEEEEEecCCCCCCCCCCCCCCCcceEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 127 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~~~~----g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~ 127 (172)
.|+.+.|.|++++++||+++|||+.....+.... .....++.. ++..++|+..+..... .....++..|+||.
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~f~ 80 (126)
T cd08346 3 HHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIAFS 80 (126)
T ss_pred ccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEEEE
Confidence 4788999999999999999999998754321010 111223332 2335777665432210 11122346899999
Q ss_pred EC---CHHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEE
Q 030725 128 IR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 128 V~---dld~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~ 168 (172)
|+ ++++++++++++|+++... ..+.+.+||+|||||.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 98 4699999999999988632 45678999999999999984
No 34
>PLN02300 lactoylglutathione lyase
Probab=99.71 E-value=2.2e-16 Score=128.91 Aligned_cols=125 Identities=21% Similarity=0.203 Sum_probs=85.7
Q ss_pred cccCCceeeEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe----EEEEEecCCCCCCCCCCCC
Q 030725 42 CRCNGQFLTTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEH 117 (172)
Q Consensus 42 ~~~~~~~l~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~----~l~L~~~~~~~~~~~~p~~ 117 (172)
.+|--..+....|+.|.|+|++++++||+++|||+...........+...|+..++. .+.+...... .....
T Consensus 15 ~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~----~~~~~ 90 (286)
T PLN02300 15 LEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV----DKYDI 90 (286)
T ss_pred hcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC----Ccccc
Confidence 345323455567899999999999999999999998653221122334566665532 2333221111 11112
Q ss_pred CCCcceEEEEECCHHHHHHHHHHCCCeEEec----CC-CceEEEEECCCCCEEEEEee
Q 030725 118 GGRDRHTCIAIRDVSKLKMILDKAGISYTLS----KS-GRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 118 ~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~----~~-g~~~~y~~DPDGn~iEl~e~ 170 (172)
+.+..|+||.|+|+++++++|+++|+++... .+ +.+.+||+|||||.|||+++
T Consensus 91 ~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~ 148 (286)
T PLN02300 91 GTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQR 148 (286)
T ss_pred CCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeC
Confidence 3456899999999999999999999988633 22 34678999999999999986
No 35
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.71 E-value=1e-16 Score=119.59 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=75.3
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCC-CCCcceEEEEeCCe--EE--EEEecCCCCCCCCCCCCCCCcceEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHD-KLPYRGAWLWVGAE--MI--HLMELPNPDPLSGRPEHGGRDRHTCIA 127 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~~~~g~~--~l--~L~~~~~~~~~~~~p~~~g~~~Hi~f~ 127 (172)
.|+.|.|+|+++|++||+++|||++....... .......|+..++. .+ +-+... ..+ .++.+|+||.
T Consensus 3 ~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~------~~~--~~g~~Hiaf~ 74 (153)
T cd07257 3 GHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA------QGP--ESGVHHAAFE 74 (153)
T ss_pred cEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh------cCC--CCceeEEEEE
Confidence 57999999999999999999999986421100 11223566665421 11 111111 011 2457899999
Q ss_pred ECCHHHHH---HHHHHCCCeEEecC-----CCceEEEEECCCCCEEEEEe
Q 030725 128 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 128 V~dld~~~---~~L~~~Gv~i~~~~-----~g~~~~y~~DPDGn~iEl~e 169 (172)
|+|++++. ++|+++|+++.... .....+||+|||||.|||+.
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 99999986 99999999987431 22446799999999999985
No 36
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.71 E-value=4.9e-16 Score=110.70 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=75.0
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-C-eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
..|+.+.|+|+++|++||+++|||+.....+ ....|+... + ....+. ... ....+..|+||.|+
T Consensus 5 l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~-----~~~~~~~~~~~~~~~~~~-l~~--------~~~~~~~hiaf~v~ 70 (122)
T cd07265 5 PGHVQLRVLDLEEAIKHYREVLGLDEVGRDD-----QGRVYLKAWDEFDHHSIV-LRE--------ADTAGLDFMGFKVL 70 (122)
T ss_pred EeEEEEEeCCHHHHHHHHHhccCCEeeeecC-----CceEEEEccCCCcccEEE-ecc--------CCCCCeeEEEEEeC
Confidence 4578999999999999999999999865321 123455442 1 111221 110 01124579999997
Q ss_pred ---CHHHHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEeec
Q 030725 130 ---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 130 ---dld~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
|+++++++|+++|+++... ....+.+||+|||||.|||.+..
T Consensus 71 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 71 DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7889999999999998632 23346899999999999998753
No 37
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.71 E-value=3.9e-16 Score=108.31 Aligned_cols=100 Identities=25% Similarity=0.414 Sum_probs=71.3
Q ss_pred eecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 030725 57 VEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 132 (172)
Q Consensus 57 i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~----~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld 132 (172)
|.|+|++++++||+++|||++....+ ....+..+.. ...+...+.. +....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDP------PGPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESS------SSSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCcc------ccCCCceeEEEEEEcCHH
Confidence 56899999999999999999986322 2234444321 2233333211 112345689999999999
Q ss_pred HHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEE
Q 030725 133 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 133 ~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~ 168 (172)
+++++|+++|+++... .+|.+.++|.|||||.|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999997532 57889999999999999986
No 38
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.71 E-value=4.7e-16 Score=111.28 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=76.0
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~-- 129 (172)
.|+.+.|+|+++|++||+++||++.... .+ ...++..++ ..+.+...+ . .....|++|.++
T Consensus 6 ~hv~l~v~Dl~~s~~FY~~~lG~~~~~~-----~~-~~~~~~~~~~~~l~~~~~~---------~-~~~~~h~a~~v~~~ 69 (123)
T cd08351 6 NHTIVPARDREASAEFYAEILGLPWAKP-----FG-PFAVVKLDNGVSLDFAQPD---------G-EIPPQHYAFLVSEE 69 (123)
T ss_pred eEEEEEcCCHHHHHHHHHHhcCCEeeec-----cC-CEEEEEcCCCcEEEEecCC---------C-CCCcceEEEEeCHH
Confidence 5789999999999999999999998642 11 123344432 345443321 1 122479999887
Q ss_pred CHHHHHHHHHHCCCeEEec-----------CCCceEEEEECCCCCEEEEEeec
Q 030725 130 DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~-----------~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
|+++++++|+++|+++... .+|.+.+||+|||||.|||++.+
T Consensus 70 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 70 EFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 6999999999999998521 36778999999999999999864
No 39
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=6.3e-16 Score=110.07 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=77.7
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC-
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~--~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~- 129 (172)
.|+.+.|+|++++++||+++|||++... . ....++..++ ..+.+...+... .......+..|++|.|+
T Consensus 4 ~hi~l~v~d~~~~~~Fy~~~lG~~~~~~-~-----~~~~~l~~~~~~~~l~l~~~~~~~---~~~~~~~~~~hi~f~v~~ 74 (125)
T cd07255 4 GAVTLRVADLERSLAFYQDVLGLEVLER-T-----DSTAVLGTGGKRPLLVLEEDPDAP---PAPPGATGLYHFAILLPS 74 (125)
T ss_pred EEEEEEECCHHHHHHHHHhccCcEEEEc-C-----CCEEEEecCCCeEEEEEEeCCCCC---cccCCCCcEEEEEEECCC
Confidence 5789999999999999999999999753 1 1245666554 234443332211 01112234679999997
Q ss_pred --CHHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEEee
Q 030725 130 --DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 --dld~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++++++|+++|+++... ....+++||+|||||+|||...
T Consensus 75 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 75 RADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred HHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEe
Confidence 4889999999999988633 2334689999999999999864
No 40
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=3.3e-16 Score=111.75 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=77.0
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE--CC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI--RD 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V--~d 130 (172)
.|+.+.|+|++++.+||+++||++.....+ ...|+..++..+.+...+.. . ..+...|+||.+ +|
T Consensus 3 ~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~-----~--~~~~~~hi~f~v~~~d 69 (121)
T cd07244 3 NHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANV-----G--PAKDYTHYAFSVSEED 69 (121)
T ss_pred ceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCC-----C--CCCCeeeEEEEeCHHH
Confidence 468889999999999999999999865322 23566666555444221111 1 123457999998 47
Q ss_pred HHHHHHHHHHCCCeEEec-CCCceEEEEECCCCCEEEEEee
Q 030725 131 VSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~-~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+++++++|+++|+++... ....+.+||+|||||.|||+..
T Consensus 70 l~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 70 FASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 999999999999988643 2234689999999999999863
No 41
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=3.3e-16 Score=110.94 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=74.5
Q ss_pred eeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHHH
Q 030725 55 MSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 134 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld~~ 134 (172)
..++++|++++++||++ |||+.....+ ..+++..++..+.|...... . .....|++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~-------~-~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVK-------D-WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCc-------c-cccCCEEEEEECCHHHH
Confidence 35678999999999987 9999975321 24567777766665332111 0 11235899999999999
Q ss_pred HHHHHHCCCeEE---------ecCCCceEEEEECCCCCEEEEEe
Q 030725 135 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 135 ~~~L~~~Gv~i~---------~~~~g~~~~y~~DPDGn~iEl~e 169 (172)
+++|+++|+++. ...+|.+.++|+|||||.|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998742 12578899999999999999975
No 42
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.70 E-value=6.7e-16 Score=108.29 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=73.4
Q ss_pred eeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC---eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 55 MSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~---~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
..+.|+|++++++||+++|||+.... . + ...++..++ ..+.+..... . .....|++|.|+|+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~i~~~v~d~ 68 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD-H----G-WIATFASPQNMTVQVSLATEGG--------T-ATVVPDLSIEVDDV 68 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc-C----C-ceEEEeecCCCCcEEEEecCCC--------C-CCCCCEEEEEeCCH
Confidence 46778999999999999999998642 1 1 122333322 2344432211 0 11246999999999
Q ss_pred HHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 132 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++++|+++|+++... .+|.+.+||.|||||.|||+++
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 99999999999998643 4677889999999999999975
No 43
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=3.7e-16 Score=111.73 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=74.9
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-CeEEEEEecCCCCC--CCCCC-CCCCCcceEEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP--LSGRP-EHGGRDRHTCIAI 128 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~~~l~L~~~~~~~~--~~~~p-~~~g~~~Hi~f~V 128 (172)
..+.+.|+|+++|++||++ |||+.....+ .....++..+ +..+.|...+.... ....+ ...+...|++|.|
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~----~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFS----DEKAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccC----CCCeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 4578899999999999986 8998753211 1123455555 34566654321100 00000 1123346999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEe
Q 030725 129 R---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 129 ~---dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e 169 (172)
+ ++++++++++++|+++..+ ..+.+.+||+|||||.|||+.
T Consensus 77 ~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 77 DSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 8 5788999999999998743 234467899999999999975
No 44
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=5e-16 Score=112.97 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=75.9
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC--e--EEEEEecCCCCCCCCCCCCCCCcceEEEE
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 127 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~--~--~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~ 127 (172)
..|+.+.|+|+++|++||+++||+++....+ ....|+..++ . .+.+...+ ....+.+|+||.
T Consensus 4 l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~---------~~~~g~~hiaf~ 69 (134)
T cd08360 4 LGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-----GRGAFLRAAGGGDHHNLFLIKTP---------APMAGFHHAAFE 69 (134)
T ss_pred eeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-----CcEEEEECCCCCCCcEEEEecCC---------CCCCcceEEEEE
Confidence 4678999999999999999999999864221 1356776642 1 33333221 112457899999
Q ss_pred ECCHHHHH---HHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 128 IRDVSKLK---MILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 128 V~dld~~~---~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+|++++. ++|+++|+++... ..+...+||+|||||.|||...
T Consensus 70 v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 70 VGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred eCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 99988776 5999999987632 1334568999999999999853
No 45
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=5.3e-16 Score=110.46 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=75.8
Q ss_pred eEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 50 TTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 50 ~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
+-..|+.+.|+|++++++||+++|||++....+ ...|+..++ ...+.+..... . ..+.+|+||.|
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~-~~~~~h~af~v 70 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------P-EAGLGHIAWRA 70 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------C-CCceEEEEEEc
Confidence 334689999999999999999999999875311 234565432 12222222100 0 12468999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEee
Q 030725 129 R---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 129 ~---dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+ +++++.++|+++|+++... ..+..++||+|||||.||++..
T Consensus 71 ~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 71 SSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 7 5788999999999987532 3445689999999999999864
No 46
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.69 E-value=9.9e-16 Score=107.56 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=77.6
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~-- 129 (172)
.|+.+.++|++++++||+++||+++.... ...+|+..+ +..+.+.....+ ..+..|++|.|+
T Consensus 4 ~hv~l~v~d~~~~~~FY~~~lg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~~v~~~ 68 (117)
T cd07240 4 AYAELEVPDLERALEFYTDVLGLTVLDRD------AGSVYLRCSEDDHHSLVLTEGD---------EPGVDALGFEVASE 68 (117)
T ss_pred eEEEEecCCHHHHHHHHHhccCcEEEeec------CCeEEEecCCCCcEEEEEEeCC---------CCCceeEEEEcCCH
Confidence 47889999999999999999999987532 134677776 333333221110 124589999997
Q ss_pred -CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 130 -DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 -dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+++++.++|+++|+++... .++.+.+||+|||||.+|++..
T Consensus 69 ~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 69 EDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 6888999999999998643 4566899999999999999864
No 47
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1.3e-15 Score=108.94 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=80.6
Q ss_pred EeeeeecCChHHHHHHhHhcc---CCEEeeecCCCCCCcceEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKI---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~~-g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
.|+.+.++|++++++||+++| ||+.....+ ....|+.. ++..+.++........... ....+..|+||.|
T Consensus 3 ~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~-----~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~g~~hia~~v 76 (128)
T cd07242 3 HHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE-----DGRSWRAGDGGTYLVLQQADGESAGRHD-RRNPGLHHLAFRA 76 (128)
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec-----cCceEEecCCceEEEEEecccCCCcccc-cCCcCeeEEEEEc
Confidence 478889999999999999999 999875321 12345554 5566777654432211011 1123457999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEEee
Q 030725 129 R---DVSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 129 ~---dld~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+ |+++++++|+++|+++... ..+.+.+||+|||||.|||+.+
T Consensus 77 ~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 77 PSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 7 4889999999999998742 2356789999999999999863
No 48
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.69 E-value=9e-16 Score=109.07 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=74.2
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-CeEEEEEecCCCCC-CCCCCCCCCCcceEEEEEC-
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR- 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~~~l~L~~~~~~~~-~~~~p~~~g~~~Hi~f~V~- 129 (172)
.++++.|+|+++|++||+. |||+..... .....+++..+ +..+.|........ ....+...++..|++|.++
T Consensus 2 ~~i~l~V~D~~~a~~FY~~-LGf~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRR-LGFDFPEEA----DDEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCET 76 (122)
T ss_pred ceEEEEeccHHHHHHHHHH-hCceecCCc----CCCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCC
Confidence 4688999999999999975 999985421 11123345554 44454432211100 0011111233468999875
Q ss_pred --CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEE
Q 030725 130 --DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 130 --dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~ 168 (172)
|+++++++|+++|+++... .+|.+.++|+|||||.|||+
T Consensus 77 ~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 77 PAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 8999999999999987632 47778899999999999996
No 49
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.5e-15 Score=107.41 Aligned_cols=112 Identities=24% Similarity=0.374 Sum_probs=78.7
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-eEEEEEecCCCCC-CC-CCCCCCCCcceEEEEE--
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDP-LS-GRPEHGGRDRHTCIAI-- 128 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~~l~L~~~~~~~~-~~-~~p~~~g~~~Hi~f~V-- 128 (172)
++++.|.|++++++||+++|||++... +. ...+++..++ ..+.++....... .. ..+....+..|++|.+
T Consensus 3 ~~~l~v~d~~~s~~Fy~~~lG~~~~~~-~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 77 (122)
T cd08354 3 ETALYVDDLEAAEAFYEDVLGLELMLK-ED----RRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPA 77 (122)
T ss_pred EEEEEeCCHHHHHHHHHhccCCEEeec-CC----CceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCH
Confidence 567888999999999999999998752 21 1235666665 3455544321110 00 0111123457999998
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEee
Q 030725 129 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+|++++++++.++|+++... .++.+.+||+|||||.||+++.
T Consensus 78 ~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 78 EELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 48999999999999988643 4567889999999999999863
No 50
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1.8e-15 Score=107.27 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=74.5
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC--
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d-- 130 (172)
.|+.+.|+|++++.+||+++||++.....+ . ...| ..++..+++....... .+. ++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-~~~~-~~~~~~~~~~~~~~~~----~~~--~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----D-YAKF-LLEDPRLNFVLNERPG----APG--GGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----C-eeEE-EecCCceEEEEecCCC----CCC--CCeeEEEEEeCCHH
Confidence 478889999999999999999998764211 1 1223 3333334443221111 011 346899999987
Q ss_pred -HHHHHHHHHHCCCeEEecC------CCceEEEEECCCCCEEEEEeec
Q 030725 131 -VSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 131 -ld~~~~~L~~~Gv~i~~~~------~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+++++++|.++|+++.... .+.+.+|++|||||.|||+++.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 7889999999999987431 1246799999999999999864
No 51
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=8.1e-16 Score=109.21 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=71.3
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCC--CCCCCC-CCCCCCcceEEE--EE
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNP--DPLSGR-PEHGGRDRHTCI--AI 128 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~--~~~~~~-p~~~g~~~Hi~f--~V 128 (172)
|+.+.|+|+++|++||+++|||++... . .. ...+..++..+.+...... ...... ........|++| .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~-~---~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRS-S---ET--WVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeec-c---CC--cccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 688999999999999999999998642 1 11 1123333333333222111 100000 011123467765 56
Q ss_pred CCHHHHHHHHHHCCCeEEec--------CCCceEEEEECCCCCEEEEEe
Q 030725 129 RDVSKLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~--------~~g~~~~y~~DPDGn~iEl~e 169 (172)
+|+++++++|+++|+++... .++.+.+||+|||||.|||..
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 79999999999999998732 234588999999999999975
No 52
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.68 E-value=1.4e-15 Score=107.56 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=77.1
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC--
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~-- 129 (172)
..|+.+.++|++++++||+++|||+.... . . ...|+..++...+++..... . .....|++|.|+
T Consensus 4 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~v~~~ 69 (120)
T cd08362 4 LRGVGLGVPDLAAAAAFYREVWGLSVVAE-D---D--GIVYLRATGSEHHILRLRRS-------D-RNRLDVVSFSVASR 69 (120)
T ss_pred eeEEEEecCCHHHHHHHHHhCcCcEEEEe-c---C--CEEEEECCCCccEEEEeccC-------C-CCCCceEEEEeCCH
Confidence 46789999999999999999999998642 1 1 24566544333344433211 0 123479999994
Q ss_pred -CHHHHHHHHHHCCCeEEec------CCCceEEEEECCCCCEEEEEee
Q 030725 130 -DVSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 -dld~~~~~L~~~Gv~i~~~------~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++++++|+++|+++... .++.+.+||+||+||.|||+..
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 70 ADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred HHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 6899999999999998632 3466789999999999999874
No 53
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=8.9e-16 Score=109.15 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=80.3
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCC-CCCcceEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCcceEEEEEC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~~~~g~~~l~L~~~~~~~~~~~--~p~~~g~~~Hi~f~V~ 129 (172)
.|+.+.++|++++.+||+++||++.....+.. .......|+..++..+.++.......... ....+.+..|++|.|+
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v~ 81 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEVD 81 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEeC
Confidence 36788999999999999999999997533211 12233456666777788875432211100 0012345689999999
Q ss_pred CHHHHHHHHHHCCCeEEec-----CCCceEEEEECCC--CCEEEEEe
Q 030725 130 DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPD--ANALEFTQ 169 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPD--Gn~iEl~e 169 (172)
|+++++++|+++|+++... .+|...+|+.||| ||.|||+|
T Consensus 82 d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 82 DIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 9999999999999998743 2344445555555 99999975
No 54
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.68 E-value=1.2e-15 Score=112.81 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=74.6
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEECC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~--~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d 130 (172)
.|+.|.|+|++++++||+++|||++... . .....|+..++. .+.+... . .++..|++|.|+|
T Consensus 6 ~Hv~i~V~Dle~s~~FY~~~LG~~~~~~-~----~~~~~~l~~~~~~~~~~l~~~----------~-~~~~~hiaf~v~d 69 (144)
T cd07239 6 SHVVLNSPDVDKTVAFYEDVLGFRVSDW-L----GDQMAFLRCNSDHHSIAIARG----------P-HPSLNHVAFEMPS 69 (144)
T ss_pred eEEEEECCCHHHHHHHHHhcCCCEEEEe-e----CCeEEEEECCCCcceEEEccC----------C-CCceEEEEEECCC
Confidence 5788999999999999999999998642 1 112456666543 2333211 1 1346899999998
Q ss_pred HHHHH---HHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 131 VSKLK---MILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 131 ld~~~---~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++++. ++|+++|+++... .++.+.+||+|||||.|||++.
T Consensus 70 ~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 70 IDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred HHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 87775 8999999998632 2334678999999999999875
No 55
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.68 E-value=1.4e-15 Score=114.29 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=72.4
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~--~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
..|+.|.|+|+++|++||+++|||++..............|+..++. .+.+... .+.+.+|+||.|+
T Consensus 4 l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~-----------~~~~~~Hiaf~v~ 72 (161)
T cd07256 4 LDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG-----------NGPRLHHVAFWVP 72 (161)
T ss_pred EEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC-----------CCCceeEEEEEcC
Confidence 35799999999999999999999998642211111112345544322 2222111 1224689999998
Q ss_pred C---HHHHHHHHHHCCCeEE--ec-----CCCceEEEEECCCCCEEEEEee
Q 030725 130 D---VSKLKMILDKAGISYT--LS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 d---ld~~~~~L~~~Gv~i~--~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
| +++++++|+++|+... .. .++...+||+|||||.||+++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 6 6778889999998632 11 1345679999999999999853
No 56
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=2.1e-15 Score=109.08 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=76.7
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeE--EEEEecCCCCCCCCCCCCCCCcceEEEEECC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~--l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d 130 (172)
.|+.+.|+|++++++||+++||+++...... .......|+..++.. +.+.... . ..+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---------~-~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGD-PGVDAAAFLRCDEDHHDLALFPGP---------E-RPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEcc-CCceeEEEEEcCCCcceEEEEcCC---------C-CCCeeEEEEEcCC
Confidence 3788999999999999999999998653221 111235676665432 3332211 0 2346899999998
Q ss_pred HH---HHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 131 VS---KLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 131 ld---~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++ +++++|+++|+++... ..+.+.+||+|||||.|||.+.
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence 75 6889999999998742 2345788999999999999874
No 57
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2e-15 Score=106.10 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=74.0
Q ss_pred eeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC---
Q 030725 55 MSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 130 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~-g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d--- 130 (172)
+.+.|+|+++|++||+++||++..... .. ..++.. ++..+.++..+...+ .+...++..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~--~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PT--FALFVLGSGVKLGLWSRHTVEP---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cc--eEEEEeCCCcEEEEeeccccCC---CCCCCCCceEEEEEcCCHHH
Confidence 467789999999999999999986421 11 233444 345667765432211 11112345799999985
Q ss_pred HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEE
Q 030725 131 VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~ 168 (172)
++++++++.++|+++... .+| +.++|+|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g-~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG-YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc-cEEEEECCCCCEEEee
Confidence 788999999999998743 355 5789999999999996
No 58
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.7e-15 Score=109.12 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=72.5
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCC-------CCcceEE----EEeC----CeEEEEEecCCCCCCCCCCC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDK-------LPYRGAW----LWVG----AEMIHLMELPNPDPLSGRPE 116 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~-------~~~~~~~----~~~g----~~~l~L~~~~~~~~~~~~p~ 116 (172)
.+|++|.|+|+++|++||+++|||+...+..... ..+.+.| +..+ +..++|....... ...
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~----~~~ 78 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG----DYE 78 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC----CCC
Confidence 4688999999999999999999999764221111 1222333 3222 2245554322111 111
Q ss_pred CCCCcceEEEEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEe
Q 030725 117 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 117 ~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e 169 (172)
.+. .|++|.|++. ++.++|+++|+++...+.+ .+|++||||+.|||+.
T Consensus 79 -~g~-~~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 79 -LGN-DFLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred -CCC-CEEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 223 3788888877 5569999999999876544 7899999999999974
No 59
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.67 E-value=4.2e-15 Score=107.37 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=77.8
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-C--eEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-A--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~--~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
.|+.+.++|++++++||+++||+++....+ . ....|+..+ . ..+.++..+.... +...++..|++|.|+
T Consensus 3 ~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~---~-~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~v~ 74 (134)
T cd08348 3 SHVVLYVRDLEAMVRFYRDVLGFTVTDRGP---L-GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFEVD 74 (134)
T ss_pred eEEEEEecCHHHHHHHHHHhcCCEEEeecc---C-CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEEeC
Confidence 578899999999999999999999875322 1 123455554 2 2455554332110 111234679999998
Q ss_pred CHH---HHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEEee
Q 030725 130 DVS---KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 dld---~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|.+ +++++|.++|+++... ..+.+.+||+|||||.|||+..
T Consensus 75 ~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 120 (134)
T cd08348 75 SLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVD 120 (134)
T ss_pred CHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEc
Confidence 765 5789999999988743 3445789999999999999874
No 60
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.67 E-value=3.1e-15 Score=113.15 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=76.4
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~--~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
..|+.+.|.|++++++||+++|||+...............|+...+. .+.+.... . ...++.+|+||.|+
T Consensus 7 i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~--~------~~~~~~~hiaf~v~ 78 (166)
T cd09014 7 LDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDP--A------GARGRLHHLAYALD 78 (166)
T ss_pred eeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCC--C------CCCCCceEEEEECC
Confidence 45899999999999999999999998643221111223467766432 34332211 1 11234689999998
Q ss_pred CH---HHHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 130 DV---SKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 dl---d~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|. ++++++|+++|+++... ..+..++||+|||||.|||.+.
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 65 57889999999998522 1233468999999999999875
No 61
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.66 E-value=2.6e-15 Score=102.54 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=80.3
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHHH
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 133 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld~ 133 (172)
|+.+.++|++++++||+++||++....... ......++..++..+++...+..... ...++..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 567888999999999999999998763221 11233455556667777655422111 123456899999999999
Q ss_pred HHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEE
Q 030725 134 LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 134 ~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl 167 (172)
+.++|+++|+.+... .++.+.+|+.||+||.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 999999999988743 4567899999999999996
No 62
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.66 E-value=2.6e-15 Score=112.13 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=75.8
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCC---CCCcceEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCcceEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 127 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~---~~~~~~~~~~~g~~--~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~ 127 (172)
.|+.|.|+|++++++||+++|||++....... ......+|+..++. .+.+...+ ...+.+|+||.
T Consensus 11 ~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~----------~~~g~~Hiaf~ 80 (154)
T cd07237 11 GHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP----------GPKRIHHLMLE 80 (154)
T ss_pred CEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC----------CCceeEEEEEE
Confidence 47889999999999999999999986421100 01223456666432 22322211 12357899999
Q ss_pred ECCHH---HHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 128 IRDVS---KLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 128 V~dld---~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+|++ +++++|+++|+++... ..+.+++|++|||||.|||...
T Consensus 81 V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 81 VTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred cCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 98765 6899999999998643 2456889999999999999753
No 63
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=2.1e-15 Score=111.28 Aligned_cols=103 Identities=12% Similarity=0.206 Sum_probs=74.7
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH-
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV- 131 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl- 131 (172)
|+.+.|+|++++++||+++|||++... . ....+|+..++ ...+++... +...++.+|+||.|+|+
T Consensus 2 Hv~l~V~Dle~s~~Fy~~vLG~~~~~~-~----~~~~~~l~~~~~~~~h~~~~~--------~~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 2 HVVIGSENFEASRDSLVEDFGFRVSDL-I----EDRIVFMRCHPNPFHHTFAVG--------PASSSHFHHVNFMVTDID 68 (141)
T ss_pred cEEEecCCHHHHHHHHHhcCCCEeeee-e----CCEEEEEEcCCCCCcceeeec--------cCCCCceEEEEEECCCHH
Confidence 678999999999999999999998652 1 11345665432 223433221 11234679999999865
Q ss_pred --HHHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEe
Q 030725 132 --SKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 132 --d~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e 169 (172)
++++++|+++|+++... ..+.+.+||+|||||.|||.-
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 56799999999988632 355678999999999999965
No 64
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=3.6e-15 Score=105.17 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=76.4
Q ss_pred eeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCC--CCCCCcceEEEEE---C
Q 030725 55 MSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 129 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p--~~~g~~~Hi~f~V---~ 129 (172)
+.|.|+|++++.+||+++||+++... + .....++..++..++++..+........+ .......|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-S----NDGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-C----CCceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 56788999999999999999998642 1 11234566666677776543211000111 1122335677765 5
Q ss_pred CHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 130 DVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
|++++++++++.|+++..+ .+|.+.+|++|||||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 7999999999999998733 356789999999999999974
No 65
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.66 E-value=1.7e-16 Score=112.20 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=75.6
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCC--CCCCcceEEEEeCCeEEEEEecCCCCCCCCCCC-CCCCcceEEEEEC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPH--DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIAIR 129 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~-~~g~~~Hi~f~V~ 129 (172)
.|+++.|+|++++++||+++|||+....... ........++..+...+.++....+........ ......|+++.+.
T Consensus 3 ~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 82 (128)
T PF00903_consen 3 DHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFLAF 82 (128)
T ss_dssp EEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEEES
T ss_pred EEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEEec
Confidence 4788999999999999999999999864331 111122334555555666655432221110000 0013467888775
Q ss_pred ---CHHHHHHHHHHCCCeEEec----C-CCceEEEEECCCCCEEEE
Q 030725 130 ---DVSKLKMILDKAGISYTLS----K-SGRPAIFTRDPDANALEF 167 (172)
Q Consensus 130 ---dld~~~~~L~~~Gv~i~~~----~-~g~~~~y~~DPDGn~iEl 167 (172)
|+++++++|+++|+++... . .+...+|++|||||.|||
T Consensus 83 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 83 DVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6778899999999998743 2 334456899999999997
No 66
>PRK06724 hypothetical protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=105.80 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=70.6
Q ss_pred EEeeeeecCChHHHHHHhHhcc---CCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 52 KAKMSVEGGILKKEPIRDSDKI---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
..|+.+.|+|+++|++||+++| |++.... ..| ..|...+.|...... . +. ..+..|+||.|
T Consensus 8 i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~---------~~~-~~g~~~l~l~~~~~~---~--~~-~~g~~h~af~v 71 (128)
T PRK06724 8 IHHIEFWVANLEESISFYDMLFSIIGWRKLNE---------VAY-STGESEIYFKEVDEE---I--VR-TLGPRHICYQA 71 (128)
T ss_pred cCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee---------Eee-eCCCeeEEEecCCcc---c--cC-CCCceeEEEec
Confidence 4689999999999999999966 5554311 011 123333433322110 0 11 12357999998
Q ss_pred ---CCHHHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEEee
Q 030725 129 ---RDVSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 129 ---~dld~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+|+|+++++|+++|+++... .+|.+++||+|||||.|||..-
T Consensus 72 ~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 72 INRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 68999999999999998522 2556889999999999999753
No 67
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=1e-14 Score=103.79 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=72.4
Q ss_pred EeeeeecCChHHHHHHhHhc---cCCEEeeecCCCCCCcceEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCcceEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDK---IGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 127 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~v---LG~~~~~~~~~~~~~~~~~~~~~g--~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~ 127 (172)
.|+.+.|+|++++++||+++ ||++...+.. . ...++..+ +..+.+....... +...++..|++|.
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~hi~f~ 71 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG----P-GAVGYGKGGGGPDFWVTKPFDGE-----PATAGNGTHVAFA 71 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecC----C-ceeEeccCCCCceEEEeccccCC-----CCCCCCceEEEEE
Confidence 47889999999999999999 6998864210 1 11233332 3456654322111 1112234799999
Q ss_pred ECC---HHHHHHHHHHCCCeEEec----C---CCceEEEEECCCCCEEEEE
Q 030725 128 IRD---VSKLKMILDKAGISYTLS----K---SGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 128 V~d---ld~~~~~L~~~Gv~i~~~----~---~g~~~~y~~DPDGn~iEl~ 168 (172)
|+| ++++++++.++|+.+... . .+.+.+||+|||||.|||+
T Consensus 72 v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 72 APSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 986 788899999999987632 1 2345789999999999996
No 68
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.62 E-value=1.2e-14 Score=103.00 Aligned_cols=105 Identities=17% Similarity=0.120 Sum_probs=74.3
Q ss_pred EEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC-C-eEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 51 TKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 51 ~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g-~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
-..|+.+.|.|++++++||+++||+++... . . ...|+... + ....+...+. . ..+..|++|.|
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~hi~~~v 68 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE-D----D-DRIYLRGLEEFIHHSLVLTKA--------P-VAGLGHIAFRV 68 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc-C----C-CeEEEEecCCCceEEEEEeeC--------C-CCceeEEEEEC
Confidence 356899999999999999999999998642 1 1 23455432 1 2222221111 1 12357999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 129 R---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 129 ~---dld~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
. |+++++++|+++|+++... +++.+.+|+.|||||.||++..
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 4 7889999999999998632 2335789999999999999864
No 69
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.62 E-value=1.9e-14 Score=101.24 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=69.4
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe-CCeE--EEEEecCCCCCCCCCCCCCCCcceEE--E
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV-GAEM--IHLMELPNPDPLSGRPEHGGRDRHTC--I 126 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~-g~~~--l~L~~~~~~~~~~~~p~~~g~~~Hi~--f 126 (172)
..|+.+.|+|++++++||+ +|||++... . ...++.. ++.. +.+...+ .....|++ +
T Consensus 3 i~hv~l~v~d~~~s~~FY~-~lG~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 63 (112)
T cd08344 3 IDHFALEVPDLEVARRFYE-AFGLDVREE-G------DGLELRTAGNDHRWARLLEGA-----------RKRLAYLSFGI 63 (112)
T ss_pred eeEEEEecCCHHHHHHHHH-HhCCcEEee-c------CceEEEecCCCceEEEeecCC-----------CCceeeEEEEe
Confidence 4689999999999999997 699998642 2 1233333 3222 2232111 11234544 4
Q ss_pred EECCHHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEEee
Q 030725 127 AIRDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 127 ~V~dld~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.++|+++++++|+++|+++... .++.+.+||+|||||.|||...
T Consensus 64 ~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 64 FEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred EhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEecC
Confidence 5689999999999999998643 4555689999999999999853
No 70
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.59 E-value=2.6e-14 Score=116.38 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=75.7
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC-
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD- 130 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d- 130 (172)
..++.+.|+|+++|++||+++|||+.... . .....|+.++.....+...+.+ .....|++|.|+|
T Consensus 4 i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~-~----~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~V~~~ 69 (286)
T TIGR03213 4 LGYLGIGVSDVDAWREFATEVLGMMVASE-G----ENDALYLRLDSRAHRIAVHPGE---------SDDLAYAGWEVADE 69 (286)
T ss_pred eeEEEEEeCCHHHHHHHHHhccCcccccC-C----CCceEEEEcCCCceEEEEEECC---------cCCeeeEeeeeCCH
Confidence 46899999999999999999999987542 1 1122355765332333222111 1235799999998
Q ss_pred --HHHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEEe
Q 030725 131 --VSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 131 --ld~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~e 169 (172)
++++.++|+++|+++... .++.+.+||.|||||.|||+.
T Consensus 70 ~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 70 AGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred HHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 888999999999998742 244578999999999999986
No 71
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.55 E-value=1.1e-13 Score=113.42 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=73.8
Q ss_pred eEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCc-ceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 50 TTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPY-RGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 50 ~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
.-..|+.+.|+|++++++||+++|||+............ ...|+..++. .+.+... ..+. .+..+|+||.|
T Consensus 144 ~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~-~g~~~Hiaf~v 215 (303)
T TIGR03211 144 RRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-AHDIAFV------GDPE-PGKLHHVSFFL 215 (303)
T ss_pred eeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-Cccccee------cCCC-CCceEEEEEEc
Confidence 335689999999999999999999999854321111111 2346554322 1111110 0011 23478999999
Q ss_pred CCH---HHHHHHHHHCCCeEEecC-----CCceEEEEECCCCCEEEEE
Q 030725 129 RDV---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 129 ~dl---d~~~~~L~~~Gv~i~~~~-----~g~~~~y~~DPDGn~iEl~ 168 (172)
+|+ ++++++|+++|+++...+ .+.+++||+|||||.||+.
T Consensus 216 ~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 216 DSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred CCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 974 557789999999986431 2346899999999999997
No 72
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.54 E-value=1.9e-13 Score=111.35 Aligned_cols=110 Identities=12% Similarity=0.158 Sum_probs=75.0
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeec--CCC-CCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEAR--PHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~--~~~-~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
..|+.+.|+|++++.+||+++|||++.... +.. ...+...|+..++....+..... + ..++.+|+||.|
T Consensus 143 l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~-------~-~~~~~~Hiaf~v 214 (286)
T TIGR03213 143 LGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAG-------P-SEKRLNHLMLEV 214 (286)
T ss_pred ccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecC-------C-CCCceEEEEEEc
Confidence 457999999999999999999999986421 100 01123557766543222211110 1 123578999999
Q ss_pred CCHHH---HHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEe
Q 030725 129 RDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 129 ~dld~---~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e 169 (172)
+|+++ ++++|+++|+..... .++..++||+|||||+||+..
T Consensus 215 ~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 215 DTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred CCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 98776 799999999943321 245678999999999999975
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.53 E-value=2.3e-13 Score=110.89 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=75.4
Q ss_pred EEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-e-EEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 51 TKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-E-MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 51 ~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~-~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
-..|+.+.|+|++++++||+++|||++....+ ..+|+.... . ...+..... + ..+..|++|.|
T Consensus 4 ~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~--~~~~~hiaf~v 68 (294)
T TIGR02295 4 RTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------P--SAALSYIGFRV 68 (294)
T ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------C--CcCccEEEEEe
Confidence 35689999999999999999999999865311 234554321 1 112211110 1 12358999999
Q ss_pred C---CHHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEEee
Q 030725 129 R---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 129 ~---dld~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+ |+++++++|+++|+++... ..+.+.+||+|||||.|||+..
T Consensus 69 ~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 69 SKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred CCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 7 7889999999999998743 3456889999999999999863
No 74
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.52 E-value=3.3e-13 Score=109.95 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=71.4
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
..|+.+.|+|+++|++||+++|||++..............|+..++. .+.+.... ..+++.+|+||.|+|.
T Consensus 137 i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~Hiaf~v~d~ 207 (294)
T TIGR02295 137 LDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-VHDIALTN--------GNGPRLHHIAYWVHDP 207 (294)
T ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-cCceEeec--------CCCCceeeEEEEcCCH
Confidence 45899999999999999999999998643211111112344433221 11111110 1123578999999984
Q ss_pred ---HHHHHHHHHCCCe--EEec--C---CCceEEEEECCCCCEEEEEe
Q 030725 132 ---SKLKMILDKAGIS--YTLS--K---SGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 132 ---d~~~~~L~~~Gv~--i~~~--~---~g~~~~y~~DPDGn~iEl~e 169 (172)
++++++|+++|++ +... . .+..++|++|||||.||++.
T Consensus 208 ~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~ 255 (294)
T TIGR02295 208 LNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYT 255 (294)
T ss_pred HHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEe
Confidence 4568899999987 4322 1 23457999999999999976
No 75
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.8e-13 Score=100.11 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=82.2
Q ss_pred eeeEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecC--CCCC--CCCCCCC-CCCcc
Q 030725 48 FLTTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELP--NPDP--LSGRPEH-GGRDR 122 (172)
Q Consensus 48 ~l~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~--~~~~--~~~~p~~-~g~~~ 122 (172)
+++-.-.+++.+.+..+...||..+||++.....|. .....+.|.......++|.-.- ..++ .--.+.. +.+++
T Consensus 39 fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~-~~~~~~v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfg 117 (170)
T KOG2944|consen 39 FYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPK-PEHGVSVFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFG 117 (170)
T ss_pred hhhhhccceeechhhhhHhhhHHHhhcccccccCcc-CCCCCceEEecccCceeeecCCCCCCCcchhhcCCCCCCCccc
Confidence 444444667777788888888888888887655552 2333346766666566664211 1111 1001111 23679
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEEec-CCC--ceEEEEECCCCCEEEEEee
Q 030725 123 HTCIAIRDVSKLKMILDKAGISYTLS-KSG--RPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 123 Hi~f~V~dld~~~~~L~~~Gv~i~~~-~~g--~~~~y~~DPDGn~iEl~e~ 170 (172)
||||.|+|+++++++|+++||++... ..| ...+|+.||||+.||+...
T Consensus 118 HIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 118 HICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred eEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 99999999999999999999998754 333 2578999999999999754
No 76
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.50 E-value=5.6e-13 Score=109.24 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=73.7
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe-CC---eEEEEEecCCCCCCCCCCCCCCCcceEEEE
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV-GA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 127 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~-g~---~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~ 127 (172)
..|+.+.|+|++++++||+++|||++....+ ..+++.. ++ ..+.+... ...+..|+||.
T Consensus 5 i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~-----------~~~g~~hiaf~ 67 (303)
T TIGR03211 5 LGHVELRVLDLEESLKHYTDVLGLEETGRDG------QRVYLKAWDEWDHYSVILTEA-----------DTAGLDHMAFK 67 (303)
T ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecC------ceEEEEeccccccceEeeccC-----------CCCceeEEEEE
Confidence 3589999999999999999999999865221 1334443 21 12222110 11246899999
Q ss_pred EC---CHHHHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEEEee
Q 030725 128 IR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 128 V~---dld~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+ |+++++++|+++|+++... ....+.+||+|||||.|||++.
T Consensus 68 v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 68 VESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred eCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 98 7889999999999998632 2334789999999999999874
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.49 E-value=6.3e-13 Score=108.55 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=79.3
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~----~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
.|+.+.|+|++++.+||+++||++...........+...++..++. .+++...... ..+..+.+.+|++|.|
T Consensus 156 ~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~i~~~v 231 (286)
T PLN02300 156 CQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQIAIGT 231 (286)
T ss_pred eeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeEEEEec
Confidence 3788889999999999999999998642211123344455544221 3443221111 1112234567999999
Q ss_pred CCHHHHHHHHHHCCCeEEec----CC-CceEEEEECCCCCEEEEEeec
Q 030725 129 RDVSKLKMILDKAGISYTLS----KS-GRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~----~~-g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+|+++++++++++|+++..+ ++ +.+.++|+|||||.|+|++..
T Consensus 232 ~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 232 DDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred CCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 99999999999999998743 22 236789999999999999864
No 78
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=92.37 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=74.8
Q ss_pred EEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe---CCe-EEEEEecCCCCCCCCC-CCCCCCcceEE
Q 030725 51 TKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV---GAE-MIHLMELPNPDPLSGR-PEHGGRDRHTC 125 (172)
Q Consensus 51 ~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~---g~~-~l~L~~~~~~~~~~~~-p~~~g~~~Hi~ 125 (172)
+.-|++++|+|++++++||.++||++.-.+ ...|+.. |.+ ..|+-..+... .++. -.+.--..|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRs--------td~wvdfDfyGHQ~v~Hl~~q~~~~-~~g~V~~~~v~~pHfG 74 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRS--------TDTWVDFDFYGHQVVAHLTPQPDSQ-GSGKVDGHGVPPPHFG 74 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccc--------cceEEEeeecccEEEEEecCCcccc-cCcccCCCCCCCccce
Confidence 345899999999999999999999988532 1235443 433 34553222111 1111 11122346777
Q ss_pred E--EECCHHHHHHHHHHCCCeEEec--------CCCceEEEEECCCCCEEEEEe
Q 030725 126 I--AIRDVSKLKMILDKAGISYTLS--------KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 126 f--~V~dld~~~~~L~~~Gv~i~~~--------~~g~~~~y~~DPDGn~iEl~e 169 (172)
. .++|+-++.++|+++|+++..+ .+..+.+|+.||.||.||+..
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 5 5679999999999999988632 345678999999999999965
No 79
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.41 E-value=4.1e-12 Score=101.51 Aligned_cols=110 Identities=20% Similarity=0.280 Sum_probs=80.6
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCcceEEEEEC-
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 129 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~-~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~- 129 (172)
...+.+.|+|++.+..||+++||+++.++.. ..+-+.+|+. -+.|.+.+.... ..+. ..+..|++|.++
T Consensus 11 v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~--~~~~-~aGLyH~AfLlP~ 81 (265)
T COG2514 11 VGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARR--PPPR-AAGLYHTAFLLPT 81 (265)
T ss_pred EEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCC--CCcc-ccceeeeeeecCC
Confidence 4567888999999999999999999986422 3345667766 344544443221 1122 235689999998
Q ss_pred --CHHHHHHHHHHCCCeEEe-c-CCCceEEEEECCCCCEEEEEee
Q 030725 130 --DVSKLKMILDKAGISYTL-S-KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 --dld~~~~~L~~~Gv~i~~-~-~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+..++.++.+.|+++.- . +.-..++||.||+||-||++..
T Consensus 82 r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 82 REDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred HHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEec
Confidence 467788899999999862 2 4556789999999999999864
No 80
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.41 E-value=1.2e-12 Score=92.00 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=68.5
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCH
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 131 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~--~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dl 131 (172)
|+.+.|+|++++++||+++||+.............+..|+..++ ..++|++......... ..+++.+|+||.|+|+
T Consensus 2 Hv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~--~~~~gi~Hia~~v~D~ 79 (109)
T PF13669_consen 2 HVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLD--RGGGGIHHIAFEVDDL 79 (109)
T ss_dssp EEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHH--HTSSEEEEEEEEESHH
T ss_pred EEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccc--cCCCCEEEEEEEeCCH
Confidence 78899999999999999999998754322122445567788876 4789987543221101 1356789999999999
Q ss_pred HHHHHHHHHCCCeEEe
Q 030725 132 SKLKMILDKAGISYTL 147 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~ 147 (172)
++.+++|+++|+++..
T Consensus 80 d~~~~~l~~~G~~~~~ 95 (109)
T PF13669_consen 80 DAAIARLEAQGFRVLD 95 (109)
T ss_dssp HHHHHHHHHTTECEEE
T ss_pred HHHHHHHHHCCCEEcc
Confidence 9999999999999874
No 81
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.21 E-value=6.8e-10 Score=80.13 Aligned_cols=103 Identities=13% Similarity=-0.004 Sum_probs=69.7
Q ss_pred CChHHHHHHhHhccCCEEeeecCCCC----------CCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC
Q 030725 60 GILKKEPIRDSDKIGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 129 (172)
Q Consensus 60 ~dle~s~~FY~~vLG~~~~~~~~~~~----------~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~ 129 (172)
.|.+++++||+++||+++....+.+. .....+-+.+++..+.+........ . ..+...++++.|+
T Consensus 9 ~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~----~-~~~~~~~l~i~~~ 83 (128)
T cd06588 9 GNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFP----F-TFGNGISLSVECD 83 (128)
T ss_pred CCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCC----C-CCCCCEEEEEECC
Confidence 68999999999999999876432110 0112334667777777654331111 0 1233468999998
Q ss_pred C---HHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEE
Q 030725 130 D---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 130 d---ld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~ 168 (172)
| +++++++|.+.| .+..+ .||.+..+++||+|+.|+|.
T Consensus 84 ~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 84 SEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 6 667889987777 55422 58888999999999999973
No 82
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.20 E-value=4.3e-10 Score=81.41 Aligned_cols=110 Identities=13% Similarity=0.009 Sum_probs=73.0
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 132 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~-~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld 132 (172)
+.-|.++|++++++||++++|+....... ........+..++ .....+... ....|. +...++.|.|+|++
T Consensus 12 w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~--~~~~~y~~f~~~~~~~gG~l~~~----~~~~p~--~~~~~iy~~v~did 83 (127)
T COG3324 12 WFELPVSDLERAKAFYEKVFGWTFEDYFD--MGEMRYAVFPADGAGAGGGLMAR----PGSPPG--GGGWVIYFAVDDID 83 (127)
T ss_pred EEeeecCCHHHHHHHHHHhhCceeccccc--CCCceEEEEECCCccccceeccC----CcCCCC--CCCEEEEEecCChH
Confidence 34456899999999999999999864211 1112222232222 111111111 001111 34468999999999
Q ss_pred HHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEeec
Q 030725 133 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 133 ~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+..++..++|..+..+ +.+.+.+.+.||+||.|-|.++.
T Consensus 84 ~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 84 ATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred HHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 9999999999999844 34667889999999999998864
No 83
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.05 E-value=2.8e-09 Score=76.16 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=74.0
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCC---CCCCCcceEEEEE
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP---EHGGRDRHTCIAI 128 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p---~~~g~~~Hi~f~V 128 (172)
+..+.++|+||++|++||+ .|||+.... ..+ . .....+..++..+.|++...-..-..++ ....+..-+|+.+
T Consensus 4 mIFvNLPVkDL~~S~~Fy~-alGfk~Npq-~sd-e-~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~ 79 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYT-ALGFKFNPQ-FSD-E-DAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSA 79 (133)
T ss_pred EEEEecchhhHHHHHHHHH-HhCcccCCC-ccc-c-cceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEecc
Confidence 4467889999999999999 599998752 111 1 1122333344444444332110000000 1123446789988
Q ss_pred C---CHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEeec
Q 030725 129 R---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 129 ~---dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
. ++|+++++..++|.+...+ .+..+..-|.|||||.||+..++
T Consensus 80 ~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 80 GSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeC
Confidence 6 4788999999999988633 35566778999999999998764
No 84
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=6.8e-08 Score=70.90 Aligned_cols=108 Identities=16% Similarity=0.045 Sum_probs=74.4
Q ss_pred cC-ChHHHHHHhHhccCCEEeeecCCCC----------CCcceEEEEeCCeEEEEEecCCCCCCCCCCCC-CCCcceEEE
Q 030725 59 GG-ILKKEPIRDSDKIGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEH-GGRDRHTCI 126 (172)
Q Consensus 59 ~~-dle~s~~FY~~vLG~~~~~~~~~~~----------~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~-~g~~~Hi~f 126 (172)
.+ |-+++++||+++||.+.....+.++ ...-++-+.+++..+.+....... .+.. ++...-+-+
T Consensus 8 f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~----~~~~~~~~s~~l~~ 83 (136)
T COG2764 8 FNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDM----GATEGGGTSLSLDL 83 (136)
T ss_pred ECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCcc----CcccCCCeeEEEEE
Confidence 35 8999999999999999876444222 112234466676666653321111 1111 122345667
Q ss_pred EECCHHHHHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 127 AIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 127 ~V~dld~~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.++|++++++++.+.|+++..+ .||.+...++||.|+.|-|...
T Consensus 84 ~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~ 131 (136)
T COG2764 84 YVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTP 131 (136)
T ss_pred EehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecC
Confidence 7889999999999999888743 6999999999999999998764
No 85
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.94 E-value=2.3e-09 Score=74.82 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=67.6
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCc-ceEEEEeCCe--EEEEEec-------CCCC-CCCCCCCCC--
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPY-RGAWLWVGAE--MIHLMEL-------PNPD-PLSGRPEHG-- 118 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~~~~g~~--~l~L~~~-------~~~~-~~~~~p~~~-- 118 (172)
..|+.+.|+|+++|++||+++||++............ ....+..... ....... .... .........
T Consensus 3 l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (138)
T COG0346 3 IHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGGD 82 (138)
T ss_pred eEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCch
Confidence 3578999999999999999999999976432110100 0111111110 0000000 0000 000000111
Q ss_pred CCcceEEEEECC---HHHHHHHHHHCCCeEEecC--CCceEEEEECCCCCEEEEEe
Q 030725 119 GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 119 g~~~Hi~f~V~d---ld~~~~~L~~~Gv~i~~~~--~g~~~~y~~DPDGn~iEl~e 169 (172)
.+..|+++.+++ ...........|..+.... .....+||+||||+.||+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 83 LGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred hccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 135799999998 6667777777888876431 11127999999999999974
No 86
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.90 E-value=1.2e-08 Score=78.86 Aligned_cols=95 Identities=13% Similarity=-0.023 Sum_probs=62.1
Q ss_pred EEeeeeecC--ChHHHHHHhHhccCCEEeeecCCCC--CCcceEEEEeC--CeEEEEEecCCC-CCCC-C---CCCCCCC
Q 030725 52 KAKMSVEGG--ILKKEPIRDSDKIGLEINEARPHDK--LPYRGAWLWVG--AEMIHLMELPNP-DPLS-G---RPEHGGR 120 (172)
Q Consensus 52 ~a~~~i~~~--dle~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~~~~g--~~~l~L~~~~~~-~~~~-~---~p~~~g~ 120 (172)
..|+++.|. |++++++||+++|||+.....+... .......+..+ +..+.|.+...+ .... . ....+.+
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G~G 83 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGGAG 83 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCCCc
Confidence 457889999 9999999999999999865332111 11112233432 345666543321 1100 0 0112456
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 121 DRHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
.+|+||.|+|+++++++|+++|+++.
T Consensus 84 v~HIAf~vdDI~~~~~~L~~~Gv~~l 109 (191)
T cd07250 84 VQHIALATDDIFATVAALRARGVEFL 109 (191)
T ss_pred eeEEEEECCCHHHHHHHHHHcCCeec
Confidence 78999999999999999999999986
No 87
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=3.3e-08 Score=78.01 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=76.4
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCC-------CCCcceEE----EEeCCeEEEE-EecCCCCCCCCCCCCCCCc
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHD-------KLPYRGAW----LWVGAEMIHL-MELPNPDPLSGRPEHGGRD 121 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~-------~~~~~~~~----~~~g~~~l~L-~~~~~~~~~~~~p~~~g~~ 121 (172)
|....|.|.++++.||+++|||+++..+... +.+|.+.| +..|++.-|+ +++...- +.....-+..+
T Consensus 20 H~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNY-gV~~YelGndf 98 (299)
T KOG2943|consen 20 HYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNY-GVSKYELGNDF 98 (299)
T ss_pred eEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEecc-CccceeccCCc
Confidence 6777889999999999999999997532211 13444544 5567654333 3444221 11223445567
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEee
Q 030725 122 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.||.+.++|+-..++.+...|. ...|.-.+++.||||+.+++++.
T Consensus 99 g~i~I~s~dv~~~ve~v~~p~~----~~~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 99 GGITIASDDVFSKVEKVNAPGG----KGSGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred ccEEEeHHHHHHHHHHhcCcCC----cccceEEEEEECCCCcEEEEecc
Confidence 8999999998888887776654 22355568999999999999863
No 88
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.75 E-value=1.7e-07 Score=78.85 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=63.1
Q ss_pred eeEEEeeeeecC--ChHHHHHHhHhccCCEEeeecCCCCCCcce---EEEEe--CCeEEEEEecCCCCCCC--C---CCC
Q 030725 49 LTTKAKMSVEGG--ILKKEPIRDSDKIGLEINEARPHDKLPYRG---AWLWV--GAEMIHLMELPNPDPLS--G---RPE 116 (172)
Q Consensus 49 l~~~a~~~i~~~--dle~s~~FY~~vLG~~~~~~~~~~~~~~~~---~~~~~--g~~~l~L~~~~~~~~~~--~---~p~ 116 (172)
+.-..|+++.|. |+++++.||+++|||+....... ...+.+ .++.. |+..++|.+........ . ...
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~-~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~~~ 234 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDI-KTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLEFY 234 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEe-ccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHHHc
Confidence 444568999998 99999999999999998643221 011111 12222 34467775421111001 0 011
Q ss_pred CCCCcceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 117 HGGRDRHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 117 ~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
.+.+.+|+||.|+|+++.+++|+++|+++.
T Consensus 235 ~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l 264 (353)
T TIGR01263 235 NGAGVQHIALNTDDIVRTVRALRARGVEFL 264 (353)
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHcCCccC
Confidence 245678999999999999999999999886
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.71 E-value=2.7e-07 Score=77.70 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=63.8
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCcceEEEEECC
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~--~p~~~g~~~Hi~f~V~d 130 (172)
.|+.+.|+|++++.+||.+.|||+...... .........+..|+..+.|.....+..... ...++.+..|+||.|+|
T Consensus 4 ~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~-~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~D 82 (353)
T TIGR01263 4 DFVEFYVGDAKQAAYYYFTRFGFEKVAKET-GHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVDD 82 (353)
T ss_pred EEEEEEeCCHHHHHHHHHHhcCCcEEEEee-cCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEECC
Confidence 578999999999999999999999875311 111112223455666677754332211000 01234567899999999
Q ss_pred HHHHHHHHHHCCCeEE
Q 030725 131 VSKLKMILDKAGISYT 146 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~ 146 (172)
++++++++.++|+.+.
T Consensus 83 v~~a~~~l~~~Ga~~v 98 (353)
T TIGR01263 83 AAAAFEAAVERGAEPV 98 (353)
T ss_pred HHHHHHHHHHCCCEec
Confidence 9999999999999885
No 90
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=3.9e-07 Score=75.94 Aligned_cols=101 Identities=10% Similarity=0.015 Sum_probs=65.9
Q ss_pred EEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECC-
Q 030725 52 KAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD- 130 (172)
Q Consensus 52 ~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~d- 130 (172)
+.++.++|+|+++|++||+.+||+.. .... . +. -+++. +..|-....+. ......-+|+.+++
T Consensus 248 ~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde---~----a~-cm~dt-I~vMllt~~D~------~~~~evLl~Ls~~Sr 311 (357)
T PRK01037 248 TFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD---K----LF-LLGKT-SLYLQQTKAEK------KNRGTTTLSLELECE 311 (357)
T ss_pred eEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC---c----cc-cccCc-EEEEEecCCCC------CCcceEEEEeccCCH
Confidence 44899999999999999999999876 4211 1 11 12433 33332222111 12234579999985
Q ss_pred --HHHHHHHHHHCCCeEEec--CCCceEEEEECCCCCEEEEEe
Q 030725 131 --VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 131 --ld~~~~~L~~~Gv~i~~~--~~g~~~~y~~DPDGn~iEl~e 169 (172)
+|+++++..++|.....+ ..|. .--|.|||||.||+.-
T Consensus 312 e~VD~lv~~A~aaGG~~~~~~~D~Gf-~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 312 HDFVRFLRRWEMLGGELGEQADGHFP-LRLVFDLDGHIWVVSC 353 (357)
T ss_pred HHHHHHHHHHHHcCCCCCCCcccccC-cceeECCCCCEEEEEE
Confidence 778889999999865432 2333 3457899999999974
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.3e-07 Score=73.37 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=70.3
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeE--EEEEecCCCCCCCCCCCCCCCcceEEEEE--C
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRDRHTCIAI--R 129 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~--l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V--~ 129 (172)
++.+.|.||++|+.||++.|||++.+. +..+..+.+..|+.+ ++|...... .. ...+...++|.+ +
T Consensus 152 ~V~l~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~q~~LElt~~~~~---id---~~kg~griafaip~d 221 (299)
T KOG2943|consen 152 QVMLNVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDEQCVLELTYNYDV---ID---RAKGFGRIAFAIPTD 221 (299)
T ss_pred EEEEEehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCcceEEEEEeccCc---cc---ccccceeEEEecccc
Confidence 566778899999999999999999862 133444455666654 444322211 11 122345566765 5
Q ss_pred CHHHHHHHHHHCCCeEEe-----c---CCCceEEEEECCCCCEEEEEee
Q 030725 130 DVSKLKMILDKAGISYTL-----S---KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~-----~---~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
++..+.+.++..+.++.. . ..+.+.+.+.||||+.|.|+..
T Consensus 222 ~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdd 270 (299)
T KOG2943|consen 222 DLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDD 270 (299)
T ss_pred ccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEecc
Confidence 788888888887666531 1 2345677889999999999753
No 92
>PRK10148 hypothetical protein; Provisional
Probab=98.35 E-value=4.2e-05 Score=56.81 Aligned_cols=103 Identities=12% Similarity=-0.030 Sum_probs=66.4
Q ss_pred ChHHHHHHhHhccCCEEeeec-----CCC---------------CCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCC
Q 030725 61 ILKKEPIRDSDKIGLEINEAR-----PHD---------------KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGR 120 (172)
Q Consensus 61 dle~s~~FY~~vLG~~~~~~~-----~~~---------------~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~ 120 (172)
+-+++.+||+++||.++.... |.+ ....-++.+.+++..+.+.... +. .+. .+.
T Consensus 12 ~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~-~~----~~~-~~~ 85 (147)
T PRK10148 12 NCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAI-PS----GKA-HYS 85 (147)
T ss_pred CHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCC-CC----cCC-CCC
Confidence 799999999999998875321 100 0111234567777655553321 11 011 112
Q ss_pred cceEEEEECCHHH---HHHHHHHCCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 121 DRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~---~~~~L~~~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
..++++.++|.++ +++.| +.|.++..+ .||.+...++||.|+.|.|...
T Consensus 86 ~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 86 GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 3578888888776 56666 477777632 6888889999999999999653
No 93
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=64.84 Aligned_cols=105 Identities=18% Similarity=0.088 Sum_probs=67.6
Q ss_pred cccC-CceeeEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCC-CCCCCCCC
Q 030725 42 CRCN-GQFLTTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL-SGRPEHGG 119 (172)
Q Consensus 42 ~~~~-~~~l~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~-~~~p~~~g 119 (172)
..|. .+.-++..|+.+.|.|++++.+||+++|||+.....+ ...|+..|+...|+....-.... ..++....
T Consensus 158 ~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~ 231 (265)
T COG2514 158 EPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANAS 231 (265)
T ss_pred cccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCC
Confidence 4444 5667778899999999999999999999999986312 24578888887777543311111 11222234
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEE
Q 030725 120 RDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~ 168 (172)
+...+.+.+++-..+... +.+ ..||+|+.|.+.
T Consensus 232 GLa~~~i~~~~~~~l~~~-------------~~~---~~Dp~G~~i~~~ 264 (265)
T COG2514 232 GLAWLEIHTPDPEKLDAT-------------GTR---LTDPWGIVIRVV 264 (265)
T ss_pred CcceEEEEcCCccccccc-------------ccc---eecCCCceEEEe
Confidence 456777777754332210 111 189999999875
No 94
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.20 E-value=5.2e-06 Score=63.02 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=51.4
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCC--CCCC------CCCCCcceEE
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL--SGRP------EHGGRDRHTC 125 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~--~~~p------~~~g~~~Hi~ 125 (172)
|+.+.|+|++++.++|++.|||.+.....+...+.....+.+++..|+|+........ .++. ..+.+..++|
T Consensus 3 H~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 82 (175)
T PF13468_consen 3 HLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYGWA 82 (175)
T ss_dssp EEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEEEE
T ss_pred EEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEEEE
Confidence 7888999999999999999999987643322234455666677668999875321111 1111 1234567899
Q ss_pred EEECCHHHHHHHHHHCCCe
Q 030725 126 IAIRDVSKLKMILDKAGIS 144 (172)
Q Consensus 126 f~V~dld~~~~~L~~~Gv~ 144 (172)
+.++|+++..++|++.|+.
T Consensus 83 l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 83 LRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EE-S-HHHHHHHHHTTT-E
T ss_pred EecCCHHHHHHHHHhcCCC
Confidence 9999999999999999985
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.17 E-value=1.3e-05 Score=68.58 Aligned_cols=98 Identities=10% Similarity=-0.048 Sum_probs=63.8
Q ss_pred eeEEEeeeeecCChHHHHHHhHhccCCEEeeecCCC--CCCc---ceEEEEeCC--eEEEEEecCCC--CCCC-C---CC
Q 030725 49 LTTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHD--KLPY---RGAWLWVGA--EMIHLMELPNP--DPLS-G---RP 115 (172)
Q Consensus 49 l~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~--~~~~---~~~~~~~g~--~~l~L~~~~~~--~~~~-~---~p 115 (172)
|+..-|+++.+.+++.+..||+++|||+........ ...+ ....+..++ ..+.|.+.... .... . ..
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~~ 257 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLEH 257 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHHh
Confidence 444557888889999999999999999886422110 1111 223344443 35666553211 1110 0 01
Q ss_pred CCCCCcceEEEEECCHHHHHHHHHHC----CCeEE
Q 030725 116 EHGGRDRHTCIAIRDVSKLKMILDKA----GISYT 146 (172)
Q Consensus 116 ~~~g~~~Hi~f~V~dld~~~~~L~~~----Gv~i~ 146 (172)
..+.+.+||||.++|+.+.+++|+++ |+++.
T Consensus 258 ~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL 292 (398)
T PLN02875 258 NEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFM 292 (398)
T ss_pred cCCCCeeEEEeecCCHHHHHHHHHhccccCCeecC
Confidence 12457899999999999999999999 99886
No 96
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.94 E-value=0.00039 Score=49.66 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=56.6
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeC--CeEEEEEecCCCCCCCCCCCC-CCCcceEEEEECC
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEH-GGRDRHTCIAIRD 130 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g--~~~l~L~~~~~~~~~~~~p~~-~g~~~Hi~f~V~d 130 (172)
+..+.|+|-+...+||+++|||+...+. ...++|... ...+-|-+-|... .++.. .-...++-+.|++
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EE------na~a~lg~~~~~erlvlEESP~~r---tr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEE------NALAILGDQQKEERLVLEESPSMR---TRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEE------TTEEEEE-TT--EEEEEEE--TTT----B--SSS-SEEEEEEEESS
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeecc------ccEEEecCCCCceEEEEecCCccc---cccccCcceeeEEEEEcCC
Confidence 3567789999999999999999997531 133454432 2234443443221 11111 1246789999998
Q ss_pred HHHHHHHHHHCCCeEEe--cCCCceEEEEECCCCCEEEEEeec
Q 030725 131 VSKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~--~~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
.+++-+. .++|..+.. ....+.++-..+|+|+.+.++..+
T Consensus 74 ~~EIe~L-Lar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 74 PKEIEAL-LARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHHHH-HHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHHHHH-HhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 7666543 344444321 123346777789999999998654
No 97
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.01 E-value=0.051 Score=38.64 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=59.9
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEee---ecCCCCC----CcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEE
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINE---ARPHDKL----PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 125 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~---~~~~~~~----~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~ 125 (172)
.++... .+-++|.+||.++||-.... ..|+... ..-.+.+.+++..+...... +. . . .+....++
T Consensus 5 pyL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~-~~----~-~-~~~~~sl~ 76 (116)
T PF06983_consen 5 PYLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGG-PD----F-P-FGNNISLC 76 (116)
T ss_dssp EEEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEES-TS----------TTEEEE
T ss_pred EEEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCC-CC----C-C-CCCcEEEE
Confidence 334443 57899999999999843322 1221111 11234577777777665443 11 0 1 12236788
Q ss_pred EEECCHH---HHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEE
Q 030725 126 IAIRDVS---KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 126 f~V~dld---~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~ 168 (172)
+.++|.+ ++.++|.+-|- +++ ....+.|.-|..|.|+
T Consensus 77 i~~~~~ee~~~~f~~Ls~gG~-----~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 77 IECDDEEEIDRIFDKLSEGGQ-----WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEESSHHHHHHHHHHHHTTTE-----TCC-EEEEEE-TTS-EEEEE
T ss_pred EEcCCHHHHHHHHHHHHcCCC-----ccc-eeEEEEeCCCCEEEeC
Confidence 8888754 56778877775 334 7789999999999875
No 98
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.99 E-value=0.0046 Score=51.75 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=54.7
Q ss_pred eeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEE---EEe--CCeEEEEEecCCCCCCCC---CCCCCCCcceEEEE
Q 030725 56 SVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAW---LWV--GAEMIHLMELPNPDPLSG---RPEHGGRDRHTCIA 127 (172)
Q Consensus 56 ~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~---~~~--g~~~l~L~~~~~~~~~~~---~p~~~g~~~Hi~f~ 127 (172)
.+....++.+..||+++|||+....... .....+.. +.. |..+|-|-+-.+.....+ +...+.+..||+|.
T Consensus 174 nv~~~~md~w~~FY~~if~~~~~~~fdi-~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~~ 252 (363)
T COG3185 174 NVKAGQMDTWVLFYESLFGFREIQYFDI-PGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAFG 252 (363)
T ss_pred hcchhhHHHHHHHHHHHhCccceeeEec-cCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEec
Confidence 4455779999999999999998652211 11122221 222 222333322111111000 11235567999999
Q ss_pred ECCHHHHHHHHHHCCCeEE
Q 030725 128 IRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 128 V~dld~~~~~L~~~Gv~i~ 146 (172)
++|+-+.+++|+++|+++.
T Consensus 253 T~dI~~tv~~lr~rG~~fl 271 (363)
T COG3185 253 TDDIYATVAALRERGVKFL 271 (363)
T ss_pred ccHHHHHHHHHHHcCCccC
Confidence 9999999999999999885
No 99
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.90 E-value=0.0038 Score=43.35 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=40.3
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEe----cCCCceEEEEECCCC-CEEEEEeec
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTL----SKSGRPAIFTRDPDA-NALEFTQVD 171 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~----~~~g~~~~y~~DPDG-n~iEl~e~~ 171 (172)
+|++|.|+|+++.++.+.+ .|+.... ...+.+..++..++| ..|||+++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 8987642 245667778888998 689999974
No 100
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=96.68 E-value=0.084 Score=45.42 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=67.6
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCC--CCCCcceEEEEeCCeEEEEEecCCCCCC-------C--CCC------
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPH--DKLPYRGAWLWVGAEMIHLMELPNPDPL-------S--GRP------ 115 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~~g~~~l~L~~~~~~~~~-------~--~~p------ 115 (172)
.|+..++.|..++..||+..|||+....... ++.......++-|+..+-+-....+... . ..+
T Consensus 2 dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (398)
T PLN02875 2 HHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSDA 81 (398)
T ss_pred eEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcHH
Confidence 4678899999999999999999998653220 0011112223444433333221111000 0 000
Q ss_pred ------CCCCCcceEEEEECCHHHHHHHHHHCCCeEEecC--------CC-ceEEEEECCCCCEEEEEee
Q 030725 116 ------EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK--------SG-RPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 116 ------~~~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~~--------~g-~~~~y~~DPDGn~iEl~e~ 170 (172)
.++.+..-+||+|+|.+++++++.++|......+ .| ....-|+-++|..+-|+++
T Consensus 82 a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 82 ARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 1233446699999999999999999999875321 11 1223355566666666553
No 101
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0077 Score=49.86 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=60.9
Q ss_pred CceeeEEEeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEE----EEeCCeEEEEEecC-CCCCC-CC--CCCC
Q 030725 46 GQFLTTKAKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAW----LWVGAEMIHLMELP-NPDPL-SG--RPEH 117 (172)
Q Consensus 46 ~~~l~~~a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~----~~~g~~~l~L~~~~-~~~~~-~~--~p~~ 117 (172)
++++.+ .|+..+|.|-.++..||+..|||++...+.- ......| ++.|+. ..++..+ ++... .+ -+.+
T Consensus 13 g~~l~f-~Hi~F~vgna~q~A~~y~~~fGfep~A~~~l--etg~~~~~s~alr~g~~-vFv~~s~~~p~~~~~G~~l~~H 88 (381)
T KOG0638|consen 13 GKFLRF-HHIEFWVGNAKQAARWYCSGFGFEPLAYRGL--ETGSREWASHALRQGKI-VFVFNSAYNPDNSEYGDHLVKH 88 (381)
T ss_pred cceeee-eEEEEEecCcHHHHHHHHhhcCCcchhcccc--cccchHHHHHHhhcCCE-EEEEecCCCCCchhhhhhhhhc
Confidence 444443 4799999999999999999999998753321 1111112 222322 2222221 22111 11 1233
Q ss_pred CCCcceEEEEECCHHHHHHHHHHCCCeEEe
Q 030725 118 GGRDRHTCIAIRDVSKLKMILDKAGISYTL 147 (172)
Q Consensus 118 ~g~~~Hi~f~V~dld~~~~~L~~~Gv~i~~ 147 (172)
+.+..-+||+|+|.+++.+.+.++|+.+..
T Consensus 89 gdgvkdvafeVeD~da~~~~~va~Ga~v~~ 118 (381)
T KOG0638|consen 89 GDGVKDVAFEVEDADAIFQEAVANGAKVVR 118 (381)
T ss_pred ccchhceEEEecchHHHHHHHHHcCCcccC
Confidence 334567999999999999999999998863
No 102
>PF15067 FAM124: FAM124 family
Probab=96.45 E-value=0.037 Score=43.99 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=54.9
Q ss_pred eeecC--ChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEe---CCeEEEE--EecCCCCCCCCCCCCCCCcceEEEEE
Q 030725 56 SVEGG--ILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWV---GAEMIHL--MELPNPDPLSGRPEHGGRDRHTCIAI 128 (172)
Q Consensus 56 ~i~~~--dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~---g~~~l~L--~~~~~~~~~~~~p~~~g~~~Hi~f~V 128 (172)
.+.++ |.+.+++||+-+|+-+.....+ ++ .||.+ .+..+.| -..+ ......|. ...-+.|.|
T Consensus 133 tly~~~~N~~d~vr~Yelil~~~~~~~k~----~F--C~F~lys~~~~~iQlsLK~lp--~~~~p~p~---esavLqF~V 201 (236)
T PF15067_consen 133 TLYCSFDNYEDMVRFYELILQREPTQQKE----DF--CFFTLYSQPGLDIQLSLKQLP--PGMSPEPT---ESAVLQFRV 201 (236)
T ss_pred EEEecCCCHHHHHHHHHHHhccCcceeeC----Cc--EEEEEecCCCeEEEEEeccCC--CCCCcccc---cceEEEEEe
Confidence 34444 9999999999999988865322 22 34443 2223333 2232 11111222 235799999
Q ss_pred CCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEE
Q 030725 129 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl 167 (172)
.|+.+++-.|-.--.++. . ...-..|||||.|=|
T Consensus 202 ~~igqLvpLLPnpc~PIS---~--~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 202 EDIGQLVPLLPNPCSPIS---E--TRWQTEDYDGNKILL 235 (236)
T ss_pred cchhhhcccCCCCccccc---C--CcceeeCCCCCEecc
Confidence 999998654322211211 1 224678999999854
No 103
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=96.20 E-value=0.061 Score=39.64 Aligned_cols=113 Identities=9% Similarity=-0.078 Sum_probs=61.0
Q ss_pred EeeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEECCHH
Q 030725 53 AKMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 132 (172)
Q Consensus 53 a~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~dld 132 (172)
.++-+.+.+-+++..|+ +.|||+...... ......++-|+..+-|-..+..........++.+..-++|.|+|.+
T Consensus 11 dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr----sk~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~Da~ 85 (139)
T PF14696_consen 11 DFVEFAVPDAQALAQLF-TALGFQPVARHR----SKDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVDDAA 85 (139)
T ss_dssp EEEEEE-SSTTSCHHHH-CCCCEEEECCEC----CCSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES-HH
T ss_pred EEEEEecCCHHHHHHHH-HHhCcceEEecC----CcceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeCCHH
Confidence 35666778866666766 579999975322 1122334556654444222211000000123445577999999999
Q ss_pred HHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEEEee
Q 030725 133 KLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 133 ~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+++++..++|.+.... ......-=|+-+.|-++-|++.
T Consensus 86 ~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 86 AAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp HHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE-
T ss_pred HHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEec
Confidence 9999999999987633 2223334455666666666654
No 104
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.02 E-value=0.33 Score=34.62 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=36.5
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEecC---------------CCceEEEEECCCC-CEEEEEee
Q 030725 120 RDRHTCIAIRDVSKLKMILDKAGISYTLSK---------------SGRPAIFTRDPDA-NALEFTQV 170 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~~Gv~i~~~~---------------~g~~~~y~~DPDG-n~iEl~e~ 170 (172)
+.+|+++.|+|+++..+...+.|.++.... .+....++..|+| -.|||.+.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~ 69 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF 69 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence 468999999999999998888898764220 1123456666766 47898874
No 105
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.086 Score=43.85 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=52.9
Q ss_pred ChHHHHHHhHhccCCEEeeecCCCCCC--cce--EEE-EeCCeEEEEEecCCCCCCCCC---------CCCCCCcceEEE
Q 030725 61 ILKKEPIRDSDKIGLEINEARPHDKLP--YRG--AWL-WVGAEMIHLMELPNPDPLSGR---------PEHGGRDRHTCI 126 (172)
Q Consensus 61 dle~s~~FY~~vLG~~~~~~~~~~~~~--~~~--~~~-~~g~~~l~L~~~~~~~~~~~~---------p~~~g~~~Hi~f 126 (172)
.++.+.+||.++|||..-...++...+ +.. .|+ ...+..+- +...++.++... ...+.+..|+++
T Consensus 190 em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~-mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL 268 (381)
T KOG0638|consen 190 EMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIK-MPINEPAPGKKKKSQIQEYVEYHGGAGVQHIAL 268 (381)
T ss_pred cchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEE-EeccCCCCCCccHHHHHHHHHhcCCCceeeeee
Confidence 589999999999999986644421111 111 111 11122233 333333333211 122456799999
Q ss_pred EECCHHHHHHHHHHCCCeEE
Q 030725 127 AIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 127 ~V~dld~~~~~L~~~Gv~i~ 146 (172)
.++|+-++++.++++|+++.
T Consensus 269 ~tedIi~Ai~~lr~rG~eFL 288 (381)
T KOG0638|consen 269 NTEDIIEAIRGLRARGGEFL 288 (381)
T ss_pred cchHHHHHHHHHHhcCCccc
Confidence 99999999999999999986
No 106
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=91.25 E-value=0.9 Score=30.03 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHCCCeEEe---cCCCceEEEEECCCCCEEEEEe
Q 030725 130 DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~---~~~g~~~~y~~DPDGn~iEl~e 169 (172)
+.+++.+.|++.|+.+.. ...|...+...|.||+.+|+.=
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 789999999999997763 2456778899999999999964
No 107
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=90.63 E-value=1.2 Score=33.01 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.3
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec-----C----C--------C-----ceEEEEECCCCCEEEEEeec
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS-----K----S--------G-----RPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~-----~----~--------g-----~~~~y~~DPDGn~iEl~e~~ 171 (172)
+..|+++.|.|+++.++-..+ .|.++... . . | .+..++.-++|..||+++..
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 468999999999999988866 68766310 0 0 1 23456666788889998864
No 108
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=90.58 E-value=0.65 Score=32.34 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=36.2
Q ss_pred eeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEEEC---CH
Q 030725 55 MSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR---DV 131 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~V~---dl 131 (172)
+.+-|.| +++.+||+++||-+.. . .+.+.+..+++........++ ...+-|.|+ |+
T Consensus 9 i~LNV~d-~~~~~fy~~~f~~~~~---------~----------~l~f~ea~G~DL~~~~~~twD-Le~Lkf~V~~~~Dl 67 (101)
T PF14507_consen 9 IELNVPD-AKSQSFYQSIFGGQLP---------F----------FLTFQEAQGPDLTIENNETWD-LEMLKFQVPKDFDL 67 (101)
T ss_dssp EEEEE-T--T---S--H---HHHT---------T----------TEEEEE---CCGSS-TTSBSS-EEEEEEEES-S--H
T ss_pred EEEeCCC-hhHHHHHHhccccCCC---------c----------eEEEeeccCCccccCCCcEEe-eEEEEEEecCcccH
Confidence 4555668 7899999999873221 1 122222222221111112222 356778888 67
Q ss_pred HHHHHHHHHCCCeEEecCCCceEEEEECCCCCEE
Q 030725 132 SKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 165 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~i 165 (172)
.++.++|.+.+ +-..+ ..+.+-+.||.|..|
T Consensus 68 ~~L~~~le~~~--~fidK-k~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 68 AALKSHLEEQE--FFIDK-KEKFLVTSDPSQIEL 98 (101)
T ss_dssp HHHHHHTTTS---EE--T-T-SEEEEE-TTS-EE
T ss_pred HHHHHHhcccc--eEecC-CceEEEEECCcceEE
Confidence 88999998833 33333 235777889988654
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=90.40 E-value=2.5 Score=28.63 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=34.8
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec---CCCce-EEEEECCCCCEEEEEe
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS---KSGRP-AIFTRDPDANALEFTQ 169 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~---~~g~~-~~y~~DPDGn~iEl~e 169 (172)
+.+|+++.|.|+++..+...+ .|..+... ..+.. .+.+..+++..+|+..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 358999999999999998875 79887633 11112 2334456777888765
No 110
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.79 E-value=1.8 Score=29.88 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=33.3
Q ss_pred cceEEEEECCHHHHHHHHHHC----CCeEEecCCCceEEEEECCCCCEEEEEee
Q 030725 121 DRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~~----Gv~i~~~~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.+|+++.|+|+++..+...+. |.+......+ ...|+...++..|++.+.
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 579999999999999888775 8877643212 223444345567777654
No 111
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=88.90 E-value=2.2 Score=27.69 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=36.1
Q ss_pred eEEEEECCHHHHHHHHHH-CCCeEEecC--CCceEEEEECCCCCEEEEEee
Q 030725 123 HTCIAIRDVSKLKMILDK-AGISYTLSK--SGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 123 Hi~f~V~dld~~~~~L~~-~Gv~i~~~~--~g~~~~y~~DPDGn~iEl~e~ 170 (172)
|+.+.+.|+++..+.+.+ .|....... .....+++.++ +..|+|.+.
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~ 50 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEG 50 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecC
Confidence 889999999999999987 898876543 23455666665 788888775
No 112
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=88.07 E-value=8 Score=32.79 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=61.3
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEEE-EeCCeEEEEEecCCCCCC--CCCCCCCCCcceEEEEECC
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAWL-WVGAEMIHLMELPNPDPL--SGRPEHGGRDRHTCIAIRD 130 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~-~~g~~~l~L~~~~~~~~~--~~~p~~~g~~~Hi~f~V~d 130 (172)
++-+.+.|.+.+..=|-..|||....... ...+++ +-|+ +.|+-...+... .....++....-++|.|+|
T Consensus 25 FvEf~~~d~~~~l~~l~~~lGF~~~~~Hr-----sk~v~l~rQGd--inlvvn~~~~s~a~~f~~~Hgps~~a~a~~V~D 97 (363)
T COG3185 25 FVEFAVPDPQEALGALLGQLGFTAVAKHR-----SKAVTLYRQGD--INLVVNAEPDSFAAEFLDKHGPSACAMAFRVDD 97 (363)
T ss_pred EEEEecCCHHHHHHHHHHHhCcccccccc-----ccceeEEEeCC--EEEEEcCCCcchhhHHHHhcCCchheeEEeeCC
Confidence 57777888855555566689998864221 112332 3343 444433322110 0111344455789999999
Q ss_pred HHHHHHHHHHCCCeEEec-------------CCCceEEEEECCCC
Q 030725 131 VSKLKMILDKAGISYTLS-------------KSGRPAIFTRDPDA 162 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~-------------~~g~~~~y~~DPDG 162 (172)
.+.++++..+.|.+.... .-|..-+||-|++|
T Consensus 98 A~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 98 AEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred HHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 999999999999944311 13456788888883
No 113
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.60 E-value=4.2 Score=27.57 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=34.2
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEe----cCCCceEEEEECCCCCEEEEEee
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTL----SKSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~----~~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.+|+++.|+|+++..+-..+ .|.+... ...+....|+.-.+|..+|+.+.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 47999999999999888776 5777542 12333344554446778888753
No 114
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=87.20 E-value=3.4 Score=30.51 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEEC-CCCCEEEEEee
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~D-PDGn~iEl~e~ 170 (172)
.+|+++.|.|+++..+-..+ .|.++.....+...++..+ .+|..|++.+.
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 57999999999999988866 5887764332322222222 35788888764
No 115
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=87.13 E-value=2.8 Score=27.63 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=33.1
Q ss_pred ceEEEEECCHHHHHHHHH-HCCCeEEecC-CCceEEEEECCCCCEEEEEee
Q 030725 122 RHTCIAIRDVSKLKMILD-KAGISYTLSK-SGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~-~~Gv~i~~~~-~g~~~~y~~DPDGn~iEl~e~ 170 (172)
+|+++.|+|+++..+... -.|....... ......++..+++..+++.+.
T Consensus 2 ~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 2 DHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 699999999999998886 4687765332 111334555555557787754
No 116
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=86.28 E-value=5.4 Score=27.00 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=35.3
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEec---CC--CceEEEEECC---CCCEEEEEee
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLS---KS--GRPAIFTRDP---DANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~---~~--g~~~~y~~DP---DGn~iEl~e~ 170 (172)
.+|+++.|+|+++..+...+ .|.+.... .. +...+++.+. .|..++|.+.
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 57999999999999998876 68877532 11 1234556655 5678888764
No 117
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=86.26 E-value=5.6 Score=27.72 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.2
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECC--CCCEEEEEee
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DP--DGn~iEl~e~ 170 (172)
..|+.+.|.|+++..+...+ .|.++.....+....|+..+ .+..+++.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999998877 78887643322234555543 3456777653
No 118
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.71 E-value=4.8 Score=26.87 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=33.4
Q ss_pred eEEEEECCHHHHHHHHHH-CCCeEEecC---CCceEEEEECCCC--CEEEEEe
Q 030725 123 HTCIAIRDVSKLKMILDK-AGISYTLSK---SGRPAIFTRDPDA--NALEFTQ 169 (172)
Q Consensus 123 Hi~f~V~dld~~~~~L~~-~Gv~i~~~~---~g~~~~y~~DPDG--n~iEl~e 169 (172)
|+++.|.|+++..+...+ .|.++.... .+...+++.++++ ..+++.+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAP 53 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeC
Confidence 899999999999998877 898876432 3444556667764 3555543
No 119
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=84.07 E-value=5.6 Score=26.89 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=33.8
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEec---CC-CceEEEEECCC---CCEEEEEe
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTLS---KS-GRPAIFTRDPD---ANALEFTQ 169 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~~---~~-g~~~~y~~DPD---Gn~iEl~e 169 (172)
.|+++.|+|+++..+...+ .|.++... .. +...+++..++ +..+++.+
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 57 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTY 57 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEe
Confidence 6999999999999999977 49887632 22 23334555554 57788764
No 120
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=83.78 E-value=7.4 Score=27.56 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=32.0
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEecC--CCceEEEEECCCCCEEEEEe
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTLSK--SGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~--~g~~~~y~~DPDGn~iEl~e 169 (172)
+|+++.|+|+++..+..++ .|.++.... .+...+++. .++..+++.+
T Consensus 2 ~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~-~g~~~l~l~~ 51 (136)
T cd08342 2 DHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLR-QGDINFVLNS 51 (136)
T ss_pred eEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEE-cCCEEEEEec
Confidence 6999999999999999888 898876432 123334443 3344566654
No 121
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=83.18 E-value=8.1 Score=26.36 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=32.4
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCC-CCEEEEEe
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 169 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DPD-Gn~iEl~e 169 (172)
..|+.+.|+|+++..+...+ .|..+..... ..+++..++ +..|.|.+
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~ 51 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEE 51 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEe
Confidence 57999999999999998876 6888865422 234444443 45566654
No 122
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=82.80 E-value=5.9 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.4
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 122 RHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
.|+++.|+|+++..+-.+..|.++.
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceec
Confidence 6999999999999888877887764
No 123
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=82.38 E-value=6.9 Score=26.60 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=34.3
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEec-C----CCceEEEEECCCCCEEEEEee
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTLS-K----SGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~~-~----~g~~~~y~~DPDGn~iEl~e~ 170 (172)
.|+++.|+|+++..+...+ .|...... . .+...+++. .+|..++|.+.
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~ 55 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLG-LGNVQIELIEP 55 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEE-cCCEEEEEEEE
Confidence 6999999999999998877 78877532 1 123345555 36778888765
No 124
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=79.88 E-value=22 Score=27.20 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=24.0
Q ss_pred CCCcceEEEEECCHHHHHHHHH-HCCCeEE
Q 030725 118 GGRDRHTCIAIRDVSKLKMILD-KAGISYT 146 (172)
Q Consensus 118 ~g~~~Hi~f~V~dld~~~~~L~-~~Gv~i~ 146 (172)
+-...|++|.|.|+++.++-.. ..|.++.
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~ 54 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLL 54 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEE
Confidence 4467999999999999999775 4798875
No 125
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=77.24 E-value=13 Score=25.34 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=32.7
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEec----CCCceEEEEECCCCCEEEEEee
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~----~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
..|+++.|+|+++..+...+ .|.+.... ..+....++ .+++..+||.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFI-ALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEE-ecCCEEEEEEec
Confidence 57999999999999998875 68776532 123333333 344667887653
No 126
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=76.32 E-value=19 Score=24.65 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=30.3
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCC-CCEEEEE
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFT 168 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DPD-Gn~iEl~ 168 (172)
..|+++.|+|+++..+...+ .|.+......+ ..+|+..++ +..+.+.
T Consensus 3 l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 3 LGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred ccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 57999999999999988866 68876543222 234454432 3444443
No 127
>PRK11478 putative lyase; Provisional
Probab=75.47 E-value=18 Score=24.81 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=31.5
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec--CC--CceEEEEECCCCCEEEEEe
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS--KS--GRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~--~~--g~~~~y~~DPDGn~iEl~e 169 (172)
+.+|+++.|+|+++..+...+ .|.++... .. +.....+.-.++..+|+.+
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 60 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFS 60 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEE
Confidence 468999999999999988865 68877422 11 1111122223456788775
No 128
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=74.76 E-value=16 Score=24.44 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=24.1
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 148 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~ 148 (172)
+..|+.+.|+|+++..+..++ .|......
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecc
Confidence 468999999999999998877 68877643
No 129
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=74.63 E-value=22 Score=24.95 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=32.6
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCC---CCEEEEEe
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD---ANALEFTQ 169 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DPD---Gn~iEl~e 169 (172)
+..|+++.|+|+++..+-..+ .|.++...... ...|++-++ .+.+++.+
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-RGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-cEEEEECCCCCCCcEEEEec
Confidence 468999999999999988866 68877543222 234555442 34666654
No 130
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.36 E-value=7.7 Score=25.18 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCeEEec------CCCceEEEEECCCCCEEE
Q 030725 131 VSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALE 166 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~------~~g~~~~y~~DPDGn~iE 166 (172)
+.++.+.|.+.|+.+... ..-...||+.|++|+.++
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 567788899999998743 222357999999999773
No 131
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=71.04 E-value=22 Score=23.86 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=23.6
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEe
Q 030725 120 RDRHTCIAIRDVSKLKMILDKAGISYTL 147 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~~Gv~i~~ 147 (172)
+..|+++.|.|+++..+.....|..+..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 3679999999999998888778888753
No 132
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.99 E-value=41 Score=25.05 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=54.6
Q ss_pred CChHHHHHHhHhccC-CEEe--eecCCCCCC-----cceEEEEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEEE--EC
Q 030725 60 GILKKEPIRDSDKIG-LEIN--EARPHDKLP-----YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA--IR 129 (172)
Q Consensus 60 ~dle~s~~FY~~vLG-~~~~--~~~~~~~~~-----~~~~~~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f~--V~ 129 (172)
.+-+++..||.+++- -++. .+.|.+..+ .-.+-|++++.....+... +. . ..... .-+.|. ++
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g-~~--~-~f~fn---eA~S~~v~~~ 86 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGG-PN--T-SFKFN---EAFSFQVACD 86 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCC-CC--c-CCCcC---ccEEEEEEcC
Confidence 578999999999883 3332 122321111 1123467776654443322 11 0 01111 124444 44
Q ss_pred C---HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEe
Q 030725 130 D---VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 130 d---ld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e 169 (172)
| +|++.+.|.+.|.+ -..+.+++|-.|.-|+|.-
T Consensus 87 ~q~E~Drlwnal~~~g~e------~~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 87 DQEEIDRLWNALSDNGGE------AEACGWLKDKFGVSWQIVP 123 (151)
T ss_pred CHHHHHHHHHHHhccCcc------hhcceeEecccCcEEEEcH
Confidence 4 67788888888762 2356789999999998864
No 133
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=69.68 E-value=26 Score=23.29 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=28.5
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECC
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 160 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DP 160 (172)
..|+.+.|.|+++..+...+ .|.++..... ..+|++.+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 57999999999999998887 7888764432 24556654
No 134
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=68.70 E-value=28 Score=23.56 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=30.8
Q ss_pred ceEEEEECCHHHHHHHHHH----CCCeEEecCCCceEEEEECCC-CCEEEEEe
Q 030725 122 RHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 169 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~----~Gv~i~~~~~g~~~~y~~DPD-Gn~iEl~e 169 (172)
.|+.+.|.|+++..+..++ .|.+......+ ..+++..++ +..+.+..
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP-GAVGYGKGGGGPDFWVTK 53 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC-ceeEeccCCCCceEEEec
Confidence 6999999999998888776 58876543312 234445443 45566654
No 135
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=68.03 E-value=22 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEe
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTL 147 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~ 147 (172)
.+|+++.|.|+++..+...+ .|..+..
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~ 29 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVE 29 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEe
Confidence 57999999999999998876 6888763
No 136
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=66.61 E-value=44 Score=24.22 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=33.2
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec--C-----CCceEEEEE-CCCCCEEEEEe
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS--K-----SGRPAIFTR-DPDANALEFTQ 169 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~--~-----~g~~~~y~~-DPDGn~iEl~e 169 (172)
+..|+++.|+|+++..+-..+ .|.++... . .+....|++ +++.+.+++.+
T Consensus 9 ~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 9 GLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred ccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 578999999999999988866 78876531 1 122344443 45556666644
No 137
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.08 E-value=14 Score=22.13 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.1
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeE
Q 030725 121 DRHTCIAIRDVSKLKMILDKAGISY 145 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~~Gv~i 145 (172)
...+.|.+++.+.+.+.|+++|+.+
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 3678999999999999999999875
No 138
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=64.39 E-value=41 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.5
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEE
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYT 146 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~ 146 (172)
+..|+++.|+|+++..+-.++ .|.++.
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 468999999999999988865 687764
No 139
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=63.70 E-value=40 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 122 RHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
.++.+.|+|+++..+-.+..|.+..
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEc
Confidence 4788999999999888887888765
No 140
>PLN02367 lactoylglutathione lyase
Probab=61.20 E-value=56 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=28.0
Q ss_pred CCcceEEEEECCHHHHHHHHH-HCCCeEEec---CCCceEEEEE
Q 030725 119 GRDRHTCIAIRDVSKLKMILD-KAGISYTLS---KSGRPAIFTR 158 (172)
Q Consensus 119 g~~~Hi~f~V~dld~~~~~L~-~~Gv~i~~~---~~g~~~~y~~ 158 (172)
-...|++++|.|+++.++-.. ..|.+.... ..+....||.
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL 117 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFM 117 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEe
Confidence 357899999999999888774 479887532 3333345554
No 141
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=60.34 E-value=50 Score=22.31 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.1
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 148 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~ 148 (172)
+..|+.+.|+|+++..+-..+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 468999999999999998866 79887543
No 142
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=60.33 E-value=47 Score=22.85 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=30.5
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEE-CCCCCEEEEE
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 168 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~-DPDGn~iEl~ 168 (172)
...|+++.|+|+++..+...+ .|.+......+ .+|++ +.++..+-+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 357999999999999988877 58876543222 33443 3344444443
No 143
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=57.75 E-value=53 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=22.4
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEec
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTLS 148 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~~ 148 (172)
.|+++.|.|+++..+...+ .|.++...
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~ 29 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDM 29 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeec
Confidence 5999999999999998876 48877543
No 144
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=57.68 E-value=54 Score=22.64 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=31.2
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEecCC--C-ceEEEEECCC-CCEEEEEe
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDPD-ANALEFTQ 169 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~--g-~~~~y~~DPD-Gn~iEl~e 169 (172)
.|+++.|.|+++..+-..+ .|.+...... + ....|++..+ +..+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4999999999999998876 7888753211 2 2344555433 34566554
No 145
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=57.64 E-value=59 Score=22.66 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=21.2
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEE
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~ 146 (172)
+|+++.|+|+++..+...+ .|.++.
T Consensus 2 ~HV~l~V~Dl~~a~~FY~~~LG~~~~ 27 (131)
T cd08363 2 NHMTFSVSNLDKSISFYKHVFMEKLL 27 (131)
T ss_pred ceEEEEECCHHHHHHHHHHhhCCEEe
Confidence 6999999999999988876 587665
No 146
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=57.00 E-value=6.7 Score=29.62 Aligned_cols=26 Identities=4% Similarity=-0.202 Sum_probs=22.3
Q ss_pred eeeeecCChHHHHHHhHhccCCEEee
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINE 79 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~ 79 (172)
|-++.+.|+.+|..||++++|+....
T Consensus 25 ~t~~rvkd~~~Sl~fytr~~gm~l~~ 50 (170)
T KOG2944|consen 25 QTMLRVKDPTGSLKFYTRVNGMALLV 50 (170)
T ss_pred hceeecccchhhhhhhhhhccceeec
Confidence 45667789999999999999999864
No 147
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.95 E-value=40 Score=21.97 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCeEEec---CCC---ceEEEEECCCCCEEE
Q 030725 131 VSKLKMILDKAGISYTLS---KSG---RPAIFTRDPDANALE 166 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~---~~g---~~~~y~~DPDGn~iE 166 (172)
+..+...|.+.|+.+... -.| ...||++|.+|..++
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 456677888999988633 122 357999999999874
No 148
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=56.62 E-value=51 Score=23.82 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=21.8
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEE
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYT 146 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~ 146 (172)
..|+++.|+|+++..+...+ .|.++.
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~ 28 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPS 28 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEE
Confidence 47999999999999887754 788775
No 149
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=55.20 E-value=62 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.0
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 148 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~ 148 (172)
+..|+.+.|+|+++..+...+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 467999999999999998877 78877533
No 150
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=54.67 E-value=82 Score=24.35 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=40.5
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceEE-------EEeCCeEEEEEecCCCCCCCCCCCCCCCcceEEE
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGAW-------LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 126 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~-------~~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f 126 (172)
|+++.+++.+.+.+|-+..+..-..-.. ..-+++-.. +.+++..+.++++|.|... .+...| .-|+-|
T Consensus 37 HialRvn~~~~A~~~~~~l~~~G~llSe--n~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K--~Yp~eG-WEHIE~ 111 (185)
T PF06185_consen 37 HIALRVNSNETAERWKQALLQCGELLSE--NMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK--RYPQEG-WEHIEF 111 (185)
T ss_dssp EEEEE-S-HHHHHHHHHHHTTTEEEEEE--EEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS----SS-E-EEEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHHhChhhhh--ceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC--CCCCCC-ceEEEE
Confidence 8999999999999999999866543211 111222211 3457788999998865432 222233 479999
Q ss_pred EEC
Q 030725 127 AIR 129 (172)
Q Consensus 127 ~V~ 129 (172)
.++
T Consensus 112 Vip 114 (185)
T PF06185_consen 112 VIP 114 (185)
T ss_dssp E--
T ss_pred Eec
Confidence 987
No 151
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=54.19 E-value=67 Score=21.85 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=30.2
Q ss_pred cceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCCCCEEEEEe
Q 030725 121 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e 169 (172)
..|+++.|.|+++..+...+ .|.+..... +. ..++...+|..+++.+
T Consensus 5 ~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~-~~-~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 5 LNHTIVPARDREASAEFYAEILGLPWAKPF-GP-FAVVKLDNGVSLDFAQ 52 (123)
T ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEeeecc-CC-EEEEEcCCCcEEEEec
Confidence 57999999999999888865 587765432 21 2233334455565544
No 152
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.02 E-value=37 Score=20.83 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=20.7
Q ss_pred ceEEEEEC--CHHHHHHHHHHCCCeEEe
Q 030725 122 RHTCIAIR--DVSKLKMILDKAGISYTL 147 (172)
Q Consensus 122 ~Hi~f~V~--dld~~~~~L~~~Gv~i~~ 147 (172)
..+.|.++ +.+.+.+.|+++|+++.+
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 45666664 888999999999998864
No 153
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=52.47 E-value=70 Score=21.57 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=23.8
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEEec
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 148 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~~~ 148 (172)
+..|+.+.|+|+++..+...+ .|.+....
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 468999999999999988876 48877643
No 154
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.41 E-value=67 Score=21.27 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=27.9
Q ss_pred EEEEECCHHHHHHHHHHC-CCeEEecCCCceEEEEECCCCCEEEEEe
Q 030725 124 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 124 i~f~V~dld~~~~~L~~~-Gv~i~~~~~g~~~~y~~DPDGn~iEl~e 169 (172)
+++.|+|+++..+...+. |.++.....+ ...++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~~-~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSND-GVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCCC-ceEEEEc-CCeEEEEec
Confidence 678999999999888765 8776533111 2233333 556666654
No 155
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.28 E-value=87 Score=22.33 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=21.9
Q ss_pred cceEEEEECCHHHHHHHHH-HCCCeEE
Q 030725 121 DRHTCIAIRDVSKLKMILD-KAGISYT 146 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~-~~Gv~i~ 146 (172)
..|+++.|.|+++-++--. ..|.+..
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~ 29 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVL 29 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEE
Confidence 5799999999999988775 4799864
No 156
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.96 E-value=31 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.1
Q ss_pred ceEEEEECC----HHHHHHHHHHCCCeEEe
Q 030725 122 RHTCIAIRD----VSKLKMILDKAGISYTL 147 (172)
Q Consensus 122 ~Hi~f~V~d----ld~~~~~L~~~Gv~i~~ 147 (172)
..+.++++| ++++.+.|+++|+.+..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 467788888 88999999999998863
No 157
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=49.81 E-value=13 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.8
Q ss_pred EEEECCHHHHHHHHHHCCCeEEe--cCCCceEEEEECCCCCEEEE
Q 030725 125 CIAIRDVSKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 125 ~f~V~dld~~~~~L~~~Gv~i~~--~~~g~~~~y~~DPDGn~iEl 167 (172)
+|.-.|.+.+++.| .|+.+.. ..++.-.|++.|||||-.-+
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCML 225 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhh
Confidence 44556777777755 7777774 34566678999999986543
No 158
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=49.28 E-value=30 Score=27.99 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEE
Q 030725 131 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 165 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~i 165 (172)
.+++.+.++++|+.+.....-.-++|+.|||++.+
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~l 184 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSL 184 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeE
Confidence 35677889999999943344455788999997765
No 159
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=47.82 E-value=95 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.4
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEE
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYT 146 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~ 146 (172)
+..|+++.|+|+++..+-..+ .|.++.
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~ 31 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLL 31 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEE
Confidence 368999999999999988865 687765
No 160
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=47.06 E-value=69 Score=22.93 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.1
Q ss_pred eEEEEECCCCCEEEEEe
Q 030725 153 PAIFTRDPDANALEFTQ 169 (172)
Q Consensus 153 ~~~y~~DPDGn~iEl~e 169 (172)
+..|+.||+|..+..+.
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 45789999999988765
No 161
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=45.68 E-value=87 Score=21.62 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHCCCeEEe---c---------CCCceEEEEECCCCCEEEEEe
Q 030725 130 DVSKLKMILDKAGISYTL---S---------KSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~---~---------~~g~~~~y~~DPDGn~iEl~e 169 (172)
+.+++.+.+++.|+.+.. . ..+....|+.|++|..+....
T Consensus 72 ~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 72 DLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred CHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 466667777777776531 0 234568899999999887654
No 162
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=44.17 E-value=87 Score=21.73 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.4
Q ss_pred eEEEEECCCCCEEEEEe
Q 030725 153 PAIFTRDPDANALEFTQ 169 (172)
Q Consensus 153 ~~~y~~DPDGn~iEl~e 169 (172)
+..|+.|++|...-...
T Consensus 111 p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 111 RSTFLIDPDGKIVKVWR 127 (140)
T ss_pred eeEEEECCCCEEEEEEe
Confidence 57899999998876653
No 163
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=43.26 E-value=99 Score=20.64 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=23.3
Q ss_pred CcceEEEEECCHHHHHHHHHHCCCeEEe
Q 030725 120 RDRHTCIAIRDVSKLKMILDKAGISYTL 147 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~~Gv~i~~ 147 (172)
+..|+.+.|+|+++..+-..+.|.+...
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAA 30 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEE
Confidence 3579999999999998888778887653
No 164
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=42.64 E-value=26 Score=29.17 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=21.2
Q ss_pred CCcceEEEEE------CCHHHHHHHHHHCCCeEE
Q 030725 119 GRDRHTCIAI------RDVSKLKMILDKAGISYT 146 (172)
Q Consensus 119 g~~~Hi~f~V------~dld~~~~~L~~~Gv~i~ 146 (172)
-..+|+.+.| .|++++.+.|+++|++..
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 3568999999 999999999999999886
No 165
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=42.11 E-value=1.3e+02 Score=22.97 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.7
Q ss_pred eEEEEECCCCCEEEEEe
Q 030725 153 PAIFTRDPDANALEFTQ 169 (172)
Q Consensus 153 ~~~y~~DPDGn~iEl~e 169 (172)
+..|+.||+|.+.....
T Consensus 120 r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 120 RATFVVDPQGIIQAIEV 136 (187)
T ss_pred eEEEEECCCCEEEEEEE
Confidence 88899999999887754
No 166
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.95 E-value=17 Score=28.97 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.9
Q ss_pred ChHHHHHHhHhccCCEEee
Q 030725 61 ILKKEPIRDSDKIGLEINE 79 (172)
Q Consensus 61 dle~s~~FY~~vLG~~~~~ 79 (172)
|++++..||.+.||+++..
T Consensus 146 ~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred ccHHHHHHHHHhcCceeee
Confidence 6888999999999999854
No 167
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=41.56 E-value=88 Score=23.53 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCeEEe---c-----CCCceEEEEEC-CCCCEEEEEeec
Q 030725 131 VSKLKMILDKAGISYTL---S-----KSGRPAIFTRD-PDANALEFTQVD 171 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~---~-----~~g~~~~y~~D-PDGn~iEl~e~~ 171 (172)
+.++.++|.++|+.+.- . ..+...+.++| ++|..+.|.|..
T Consensus 16 L~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~L 65 (159)
T PF10649_consen 16 LAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDL 65 (159)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeecc
Confidence 46678899999999851 1 22334577888 889999999874
No 168
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=41.13 E-value=61 Score=19.77 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.2
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 122 RHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
..+-+.++|.+++.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 3566667899899999999998864
No 169
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=40.97 E-value=63 Score=17.72 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.6
Q ss_pred CCCceEEEEECCCCCEEEEEeec
Q 030725 149 KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 149 ~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+.|...-|-.|+.|+++++..+.
T Consensus 13 ~~G~~~~y~YD~~g~l~~~t~~~ 35 (38)
T PF05593_consen 13 PDGRTTRYTYDAAGRLTSVTDPD 35 (38)
T ss_pred CCCCEEEEEECCCCCEEEEECCC
Confidence 55666678889999998887654
No 170
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=40.56 E-value=64 Score=17.70 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCCceEEEEECCCCCEEEEEeec
Q 030725 149 KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 149 ~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+.|...-|-.|..|++++...++
T Consensus 13 p~G~~~~~~YD~~Grl~~~tdp~ 35 (42)
T TIGR01643 13 ADGTTTRYTYDAAGRLVEITDAD 35 (42)
T ss_pred CCCCEEEEEECCCCCEEEEECCC
Confidence 45555666677777777766554
No 171
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=39.18 E-value=40 Score=22.83 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=31.6
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeE--Eec----------CC------CceEEEEECCCCCEE
Q 030725 121 DRHTCIAIRDVSKLKMILDKAGISY--TLS----------KS------GRPAIFTRDPDANAL 165 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~~Gv~i--~~~----------~~------g~~~~y~~DPDGn~i 165 (172)
..-+++..++.++..+.+++.+..+ ... .. ..+..|+.||+|++.
T Consensus 60 ~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 60 VQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred EEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 4567888888888888887776543 211 11 556899999999874
No 172
>PRK11700 hypothetical protein; Provisional
Probab=39.02 E-value=1.8e+02 Score=22.50 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=44.8
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceE-EE------EeCCeEEEEEecCCCCCCCCCCCCCCCcceEEE
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGA-WL------WVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 126 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~-~~------~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f 126 (172)
|+++.+++.+.+.+|-+..+-.-..-. . +.-+++-. -| .+++..+..+++|.|.... +...|+ -|+-+
T Consensus 42 HialR~n~~~tAe~w~~~l~~~G~llS-e-n~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~--Yp~eGW-EHIEl 116 (187)
T PRK11700 42 HIALRCNQNETAERWRQGFLQCGELLS-E-NIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKR--YPHEGW-EHIEL 116 (187)
T ss_pred EEEEeeCCHHHHHHHHHHHHHhchhhh-c-cccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCC--CCCCCc-eEEEE
Confidence 789999999999999998875443321 1 11222222 22 3466788888988654322 222344 79999
Q ss_pred EEC
Q 030725 127 AIR 129 (172)
Q Consensus 127 ~V~ 129 (172)
.++
T Consensus 117 Vlp 119 (187)
T PRK11700 117 VLP 119 (187)
T ss_pred Eec
Confidence 986
No 173
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=38.56 E-value=1.6e+02 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.0
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEE
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYT 146 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~ 146 (172)
+.+|++|.|+|+++..+...+ .|.+..
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~ 33 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLR 33 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEE
Confidence 468999999999999998865 788764
No 174
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=38.45 E-value=37 Score=16.74 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=8.6
Q ss_pred EEEEECCCCCEE
Q 030725 154 AIFTRDPDANAL 165 (172)
Q Consensus 154 ~~y~~DPDGn~i 165 (172)
...+.|++|++|
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 356789999987
No 175
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.38 E-value=1.5e+02 Score=22.23 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=37.2
Q ss_pred cceEEEEECCHHHHHHHHHHCCCeEEe---c---------------C------CCceEEEEECCCCCEEEEE
Q 030725 121 DRHTCIAIRDVSKLKMILDKAGISYTL---S---------------K------SGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 121 ~~Hi~f~V~dld~~~~~L~~~Gv~i~~---~---------------~------~g~~~~y~~DPDGn~iEl~ 168 (172)
...+++.+++.+....-.++.|.++.. . . .-.|+-|+.||||.+....
T Consensus 65 a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 65 AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 367999999999988888888888741 0 0 1246789999999998877
No 176
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=36.88 E-value=38 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.2
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 122 RHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
.-+-++|+|+|+....|+++|+.+.
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~ 134 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLI 134 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeec
Confidence 3577889999999999999999876
No 177
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.87 E-value=67 Score=19.83 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred cceEEEEECC---HHHHHHHHHHCCCeEE
Q 030725 121 DRHTCIAIRD---VSKLKMILDKAGISYT 146 (172)
Q Consensus 121 ~~Hi~f~V~d---ld~~~~~L~~~Gv~i~ 146 (172)
.-++.+++.+ ++++.+.|+++|+.+.
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 3577888865 6788999999998753
No 178
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=32.67 E-value=78 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.8
Q ss_pred CcceEEEEECCHHHHHHHHHH-CCCeEE
Q 030725 120 RDRHTCIAIRDVSKLKMILDK-AGISYT 146 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L~~-~Gv~i~ 146 (172)
+..|+++.|.|+++..+-..+ .|.++.
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 468999999999999888876 788765
No 179
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.48 E-value=1.5e+02 Score=19.62 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=30.2
Q ss_pred EEEC-CHHHHHHHHHHCCCeEEec--C---CCceEEEEECCCCCEEEE
Q 030725 126 IAIR-DVSKLKMILDKAGISYTLS--K---SGRPAIFTRDPDANALEF 167 (172)
Q Consensus 126 f~V~-dld~~~~~L~~~Gv~i~~~--~---~g~~~~y~~DPDGn~iEl 167 (172)
+.|+ ++..+.+.|+++|+++..- . .+..++.+..-|.|..-+
T Consensus 4 IAVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~ 51 (80)
T PF03698_consen 4 IAVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGI 51 (80)
T ss_pred EEecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccc
Confidence 3454 6899999999999999743 2 356677777777765543
No 180
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.62 E-value=1.2e+02 Score=17.95 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.0
Q ss_pred ceEEEEECC---HHHHHHHHHHCCCeEE
Q 030725 122 RHTCIAIRD---VSKLKMILDKAGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~d---ld~~~~~L~~~Gv~i~ 146 (172)
.++.+.+.+ ++++.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345556655 4588999999998764
No 181
>PRK09732 hypothetical protein; Provisional
Probab=30.43 E-value=1.7e+02 Score=21.25 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEeecC
Q 030725 131 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVDG 172 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e~~~ 172 (172)
+++..+..++.|+++ ++-+.|+.||++-+.-+|+
T Consensus 16 ~~aA~~~A~~~g~~v--------~iaVvD~~G~l~a~~RmDg 49 (134)
T PRK09732 16 IAAGQEEAQKNNWSV--------SIAVADDGGHLLALSRMDD 49 (134)
T ss_pred HHHHHHHHHHhCCCE--------EEEEEcCCCCEEEEEEcCC
Confidence 345566666777654 3567788888877766653
No 182
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=30.26 E-value=2.2e+02 Score=20.84 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=27.2
Q ss_pred ceEEEEEC-CHHHHHHHHHHCCCeEE-----e----------cCCCceEEEEECCCCCEEE
Q 030725 122 RHTCIAIR-DVSKLKMILDKAGISYT-----L----------SKSGRPAIFTRDPDANALE 166 (172)
Q Consensus 122 ~Hi~f~V~-dld~~~~~L~~~Gv~i~-----~----------~~~g~~~~y~~DPDGn~iE 166 (172)
.-+++.++ +.+++.+.+++.++.+. . ...+....++.||+|+.+.
T Consensus 67 ~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 67 ALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 34555554 34455566666664421 0 0245678899999999875
No 183
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.79 E-value=77 Score=26.63 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.3
Q ss_pred CcceEEEEECCHHHHHHHH
Q 030725 120 RDRHTCIAIRDVSKLKMIL 138 (172)
Q Consensus 120 ~~~Hi~f~V~dld~~~~~L 138 (172)
.+.||||.|+|+|++....
T Consensus 168 tYP~icFavD~FdevF~dv 186 (390)
T KOG2465|consen 168 TYPEICFAVDDFDEVFDDV 186 (390)
T ss_pred ccceEEEEecCHHHhhhhh
Confidence 4689999999999998755
No 184
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=29.41 E-value=2e+02 Score=21.47 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=31.6
Q ss_pred ceEEEEEC-CHHHHHHHHHHCCCeEEe----c---------CCCceEEEEECCCCCEEEEE
Q 030725 122 RHTCIAIR-DVSKLKMILDKAGISYTL----S---------KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 122 ~Hi~f~V~-dld~~~~~L~~~Gv~i~~----~---------~~g~~~~y~~DPDGn~iEl~ 168 (172)
.-+++.++ +.+++.+.+++.|+++.. . ..+....|+.|++|.+....
T Consensus 99 ~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 99 RVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 45666664 567777788888775421 1 23456789999999877554
No 185
>PRK03094 hypothetical protein; Provisional
Probab=29.22 E-value=1.8e+02 Score=19.36 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=29.7
Q ss_pred EEC-CHHHHHHHHHHCCCeEEec-----CCCceEEEEECCCCCEEEE
Q 030725 127 AIR-DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 127 ~V~-dld~~~~~L~~~Gv~i~~~-----~~g~~~~y~~DPDGn~iEl 167 (172)
.|+ ++..+.+.|+++|+++..- ..+..++.+..-|.|..-+
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi 51 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGI 51 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecc
Confidence 454 6889999999999999732 2455677777777776544
No 186
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=28.52 E-value=20 Score=21.13 Aligned_cols=19 Identities=0% Similarity=-0.169 Sum_probs=15.1
Q ss_pred eeeecCChHHHHHHhHhcc
Q 030725 55 MSVEGGILKKEPIRDSDKI 73 (172)
Q Consensus 55 ~~i~~~dle~s~~FY~~vL 73 (172)
..++++++++..+||+..|
T Consensus 15 ~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 15 SGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CCCccccccchhHHHHHHH
Confidence 3455678999999999865
No 187
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=28.49 E-value=1.6e+02 Score=18.74 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=31.7
Q ss_pred cceEEEEECC--HHHHHHHHHHCCCeEEe--c----------CCCceEEEEECCCCCEEEEE
Q 030725 121 DRHTCIAIRD--VSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 121 ~~Hi~f~V~d--ld~~~~~L~~~Gv~i~~--~----------~~g~~~~y~~DPDGn~iEl~ 168 (172)
...+++.++. .+.+.+.+++.+..+.. . ..+...+++.||+|..+...
T Consensus 53 ~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 53 VEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred eEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 4556667765 77777777777654421 0 12456789999999887543
No 188
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.13 E-value=2.7e+02 Score=20.78 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=44.6
Q ss_pred eeeeecCChHHHHHHhHhccCCEEeeecCCCCCCcceE-EE------EeCCeEEEEEecCCCCCCCCCCCCCCCcceEEE
Q 030725 54 KMSVEGGILKKEPIRDSDKIGLEINEARPHDKLPYRGA-WL------WVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 126 (172)
Q Consensus 54 ~~~i~~~dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~-~~------~~g~~~l~L~~~~~~~~~~~~p~~~g~~~Hi~f 126 (172)
|+++.+++.+.+.+|.+..+..-.... . ..-+++-. -| .+++..+..++++.+... .+...| .-|+-+
T Consensus 4 HialR~n~~~~A~~w~~~l~~~G~llS-e-n~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k--~Yp~eG-WEHIE~ 78 (149)
T cd07268 4 HIALRVNENQTAERWKEGLLQCGELLS-E-NEINGRPIALIKLEKPLQFAGWSISIVELPFPKDK--KYPQEG-WEHIEI 78 (149)
T ss_pred eEEEeeCCHHHHHHHHHHHHHhchhhh-c-cccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC--CCCCCC-ceEEEE
Confidence 788999999999999998885544321 1 11222222 22 346678888898865432 222234 479999
Q ss_pred EEC
Q 030725 127 AIR 129 (172)
Q Consensus 127 ~V~ 129 (172)
.++
T Consensus 79 Vlp 81 (149)
T cd07268 79 VIP 81 (149)
T ss_pred Eec
Confidence 886
No 189
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=26.54 E-value=2.3e+02 Score=19.77 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred ECCHHHHHHHHHHCCCeEEec------CCCceEEEEECCCCCEEEEEeec
Q 030725 128 IRDVSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 128 V~dld~~~~~L~~~Gv~i~~~------~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+.++.+.+.+|.+.| .+... ..|.-.+...|++|..+|-..+.
T Consensus 23 ik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 23 IKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 345677888999988 44311 24555678889999999987654
No 190
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.40 E-value=63 Score=19.68 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=17.2
Q ss_pred eEEEEE---CCHHHHHHHHHHCCCeE
Q 030725 123 HTCIAI---RDVSKLKMILDKAGISY 145 (172)
Q Consensus 123 Hi~f~V---~dld~~~~~L~~~Gv~i 145 (172)
++.+.+ +|.+++.+.|+++|+++
T Consensus 44 ~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 44 ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 445555 46789999999999863
No 191
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=26.39 E-value=1.5e+02 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCE
Q 030725 129 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 164 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~ 164 (172)
.|++.+.+.|++.|+++... ....+.++|.=-+|..
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v 102 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEV 102 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEE
Confidence 47899999999999999744 2234555544334443
No 192
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=26.24 E-value=3e+02 Score=21.25 Aligned_cols=47 Identities=9% Similarity=0.261 Sum_probs=34.0
Q ss_pred eEEEEE--CCHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEee
Q 030725 123 HTCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 170 (172)
Q Consensus 123 Hi~f~V--~dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e~ 170 (172)
=+-+-| +|++++.+.|.+.|+...... +....|...+.|..||+...
T Consensus 96 DiDlLV~~~d~~~a~~~L~~~Gy~~~~~~-~~~~~~~~~~~~~~idlH~~ 144 (249)
T PF14907_consen 96 DIDLLVPPEDLERAVELLEELGYRIESPS-EHHWVYSHEPKGISIDLHWR 144 (249)
T ss_pred CeEEEEeCCcHHHHHHHHHHcCCEeccCC-CcceEEEecCCCEEEEEEec
Confidence 356666 689999999999999876543 23344555588888998653
No 193
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.04 E-value=2.8e+02 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=19.7
Q ss_pred ceEEEEECCHH---HHHHHHHHCCCeEEec
Q 030725 122 RHTCIAIRDVS---KLKMILDKAGISYTLS 148 (172)
Q Consensus 122 ~Hi~f~V~dld---~~~~~L~~~Gv~i~~~ 148 (172)
.|+|++|.+.+ ++.+.|.+.|--+...
T Consensus 3 DHialR~n~~~~A~~w~~~l~~~G~llSen 32 (149)
T cd07268 3 DHIALRVNENQTAERWKEGLLQCGELLSEN 32 (149)
T ss_pred ceEEEeeCCHHHHHHHHHHHHHhchhhhcc
Confidence 69999998764 5667777777666544
No 194
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=25.83 E-value=1.4e+02 Score=22.96 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=23.4
Q ss_pred EECCHHHHHHHHHHCCCeEEecCCCceEEEEECCCC
Q 030725 127 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 162 (172)
Q Consensus 127 ~V~dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDG 162 (172)
.+.+++++.+.|++.|+.+.....+...+.+.|.++
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~~~~~~~~~~~~~~~~~ 218 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVRRKRGKYISYKLKDKNK 218 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEEEcCCCeEEEecCCCCc
Confidence 356899999999999999883333333333334433
No 195
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.63 E-value=2.1e+02 Score=20.08 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEeec
Q 030725 131 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
..++++.|+++|+. ..++|+.+|.+.++-..+..
T Consensus 26 WPE~~a~lk~agi~-------nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 26 WPELLALLKEAGIR-------NYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred cHHHHHHHHHcCCc-------eeEEEecCCcccEEEEEEEc
Confidence 45677888888874 35888888888888777653
No 196
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=76 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.0
Q ss_pred ceEEEEECCHHHHHHHHHHCCCeEE
Q 030725 122 RHTCIAIRDVSKLKMILDKAGISYT 146 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~~Gv~i~ 146 (172)
.|+=.+-+|++++++.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 5777777899999999999998764
No 197
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=25.24 E-value=1.4e+02 Score=18.12 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCeEEec-CCCceEEEEECCCCCEEEEEeec
Q 030725 131 VSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~-~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+++-..+--..|-.+... ..|... ..+|||..|-|.+..
T Consensus 6 ls~~ea~~l~~Gr~l~~~~~~g~~a--a~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 6 LSAEEARDLRHGRRLPAAGPPGPVA--AFAPDGRLVALLEER 45 (56)
T ss_dssp --HHHHHHHHTT---B-----S-EE--EE-TTS-EEEEEEEE
T ss_pred CCHHHHHHHhCCCccCCCCCCceEE--EECCCCcEEEEEEcc
Confidence 344444445566655543 334333 459999999998753
No 198
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.82 E-value=2e+02 Score=18.41 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=25.4
Q ss_pred cceEEEEEC-CHHHHHHHHHHCCCeEE--e-------------cCCCceEEEEECCCCCE
Q 030725 121 DRHTCIAIR-DVSKLKMILDKAGISYT--L-------------SKSGRPAIFTRDPDANA 164 (172)
Q Consensus 121 ~~Hi~f~V~-dld~~~~~L~~~Gv~i~--~-------------~~~g~~~~y~~DPDGn~ 164 (172)
..-+++..+ +.+++.+.+++.+.+.. . ...+...+++.||||+.
T Consensus 36 v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 36 VEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp EEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred EEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 344555554 45666666766633322 0 02456788999999974
No 199
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=24.45 E-value=83 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=20.7
Q ss_pred CcceEEEEECC---HHHHHHHHHHCCCeEEe
Q 030725 120 RDRHTCIAIRD---VSKLKMILDKAGISYTL 147 (172)
Q Consensus 120 ~~~Hi~f~V~d---ld~~~~~L~~~Gv~i~~ 147 (172)
+...++|.|++ ++++.++|++.|+++..
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 34678999974 57799999999998864
No 200
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=23.96 E-value=1.6e+02 Score=17.20 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=13.6
Q ss_pred HHHHHHHHHCCCeEEecCCC
Q 030725 132 SKLKMILDKAGISYTLSKSG 151 (172)
Q Consensus 132 d~~~~~L~~~Gv~i~~~~~g 151 (172)
.+.+++|+++|+.+.....|
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~G 37 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRADG 37 (47)
T ss_pred HHHHHHHHHCCCeeEECCCC
Confidence 45578888999876554444
No 201
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=23.78 E-value=1.2e+02 Score=20.89 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEE
Q 030725 130 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~ 168 (172)
|+.++-.+|..+|.. --+.|++|+.-||-
T Consensus 22 d~~~L~~~lt~~GF~----------~tl~D~~G~~HeLg 50 (96)
T PF11080_consen 22 DINELNNHLTRAGFS----------TTLTDEDGNPHELG 50 (96)
T ss_pred HHHHHHHHHHhcCce----------eEEecCCCCEeecC
Confidence 577788888888754 34678888887763
No 202
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=23.46 E-value=1.1e+02 Score=18.04 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=11.8
Q ss_pred EEEEECCCCCEEEEE
Q 030725 154 AIFTRDPDANALEFT 168 (172)
Q Consensus 154 ~~y~~DPDGn~iEl~ 168 (172)
+..+.||||+...+.
T Consensus 30 sY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEECCCCCEEEEE
Confidence 456789999988775
No 203
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.43 E-value=1.8e+02 Score=21.86 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=25.2
Q ss_pred ECCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCCEEEE
Q 030725 128 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 128 V~dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn~iEl 167 (172)
-.|++.+.+.|++.|+++..+ ....+.++| |++-..+.+
T Consensus 111 ~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f-~~~tG~v~v 152 (162)
T PRK13490 111 NRNGKAVKKKLKELSIPILAEDIGGNKGRTMIF-DTSDGKVYI 152 (162)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEE-ECCCCEEEE
Confidence 348999999999999999744 122344544 444333333
No 204
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=23.39 E-value=1.8e+02 Score=20.97 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHCCCeEEec-CCCceEEEEECCCCCEEE
Q 030725 130 DVSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALE 166 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~-~~g~~~~y~~DPDGn~iE 166 (172)
|+...++.+.++|+.-... -......|+ |.+|+.|=
T Consensus 85 df~tfC~~~A~AGI~kW~vDl~~~tc~Y~-d~~~~~l~ 121 (125)
T PF07166_consen 85 DFETFCKDAAKAGIFKWVVDLNEKTCTYY-DKDNQLLL 121 (125)
T ss_dssp -HHHHHHHHHHTT--EEEEETTTTEEEEE--TT--EEE
T ss_pred cHHHHHHHHHhcCCEEEEEEccccEEEEE-cCCCCEEE
Confidence 6788899999999965432 223334444 99999873
No 205
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.08 E-value=1.8e+02 Score=21.74 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCCE
Q 030725 129 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 164 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~~---~g~~~~y~~DPDGn~ 164 (172)
.|++.+.+.|++.|+++..+. ...+.++|.--+|..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 143 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKL 143 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 488999999999999998441 223455544333443
No 206
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=23.03 E-value=2.5e+02 Score=20.42 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCeEEe--c----------CCCceEEEEECCCCCEEEE
Q 030725 131 VSKLKMILDKAGISYTL--S----------KSGRPAIFTRDPDANALEF 167 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~--~----------~~g~~~~y~~DPDGn~iEl 167 (172)
.+++.+.+++.++++.. . ..+....|+.||+|.++-.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 77 PENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HHHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 45566666666655421 0 1233568999999987744
No 207
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=22.93 E-value=2.4e+02 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.8
Q ss_pred eEEEEECCHHHHHHHHHHCCCeEEe
Q 030725 123 HTCIAIRDVSKLKMILDKAGISYTL 147 (172)
Q Consensus 123 Hi~f~V~dld~~~~~L~~~Gv~i~~ 147 (172)
-+.+..++.+++.+.|++.|+.++.
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite 70 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITE 70 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEE
Confidence 3666667899999999999998874
No 208
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.76 E-value=1.7e+02 Score=22.09 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=24.0
Q ss_pred ECCHHHHHHHHHHCCCeEEecC---CCceEEEEECCCCC
Q 030725 128 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDAN 163 (172)
Q Consensus 128 V~dld~~~~~L~~~Gv~i~~~~---~g~~~~y~~DPDGn 163 (172)
-.|++.+.+.|++.|+++..+. ...|.++|.--+|.
T Consensus 114 ~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~ 152 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGN 152 (167)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 3589999999999999998542 22345554433344
No 209
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.66 E-value=2.3e+02 Score=18.56 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=29.8
Q ss_pred ceEEEEECCHHHHHHHHHH-CCCeEEecCCCceEEEEECCCCCEEEEEe
Q 030725 122 RHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 169 (172)
Q Consensus 122 ~Hi~f~V~dld~~~~~L~~-~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e 169 (172)
.|+++.|.|+++..+...+ .|.++.....+ ..+++.-.++..+.+.+
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~~~l~~~~~~~~~l~~ 49 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKEDR-RLAFFWVGGRGMLLLFD 49 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCCC-ceEEEEcCCCcEEEEEe
Confidence 4789999999999998865 68887643222 23444444444454443
No 210
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.58 E-value=1.9e+02 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHCCCeEEec---CCCceEEEEECCCCC
Q 030725 129 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDAN 163 (172)
Q Consensus 129 ~dld~~~~~L~~~Gv~i~~~---~~g~~~~y~~DPDGn 163 (172)
.|++.+.+.|++.|+++..+ ....|.++|.--+|.
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~ 151 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFK 151 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 47899999999999999844 222345554433343
No 211
>PHA00450 host dGTPase inhibitor
Probab=22.28 E-value=2e+02 Score=19.22 Aligned_cols=39 Identities=5% Similarity=-0.022 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHCCCeEEec-------CCCceEEEEECCCCCEEEEE
Q 030725 130 DVSKLKMILDKAGISYTLS-------KSGRPAIFTRDPDANALEFT 168 (172)
Q Consensus 130 dld~~~~~L~~~Gv~i~~~-------~~g~~~~y~~DPDGn~iEl~ 168 (172)
++.++.+||.+..+.+..+ ........+.|-+|++|--.
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~ 56 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASR 56 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeee
Confidence 4677889999988887632 12233577889999998654
No 212
>PRK11700 hypothetical protein; Provisional
Probab=22.00 E-value=3.6e+02 Score=20.89 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=28.9
Q ss_pred cceEEEEECCH---HHHHHHHHHCCCeEEecCCCceEEEEECCC------CCEEEEEe
Q 030725 121 DRHTCIAIRDV---SKLKMILDKAGISYTLSKSGRPAIFTRDPD------ANALEFTQ 169 (172)
Q Consensus 121 ~~Hi~f~V~dl---d~~~~~L~~~Gv~i~~~~~g~~~~y~~DPD------Gn~iEl~e 169 (172)
..|+|++|.+. +++.+.|.+.|--+....=++|-+++.+-+ |..|+.+|
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvE 97 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVE 97 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEE
Confidence 37999999875 456677777777665443222334443332 45555554
No 213
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.50 E-value=1.9e+02 Score=18.17 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=19.2
Q ss_pred eEEEEE--CCHHHHHHHHHHCCCeEE
Q 030725 123 HTCIAI--RDVSKLKMILDKAGISYT 146 (172)
Q Consensus 123 Hi~f~V--~dld~~~~~L~~~Gv~i~ 146 (172)
-+|+.+ +|.+.+.+.|++.|+.+.
T Consensus 42 G~al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 42 GLALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred CEEEEEChhhHHHHHHHHHHCCCCee
Confidence 355555 589999999999999875
No 214
>PHA02097 hypothetical protein
Probab=21.41 E-value=85 Score=19.07 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=11.5
Q ss_pred EEECCCCCEEEEEe
Q 030725 156 FTRDPDANALEFTQ 169 (172)
Q Consensus 156 y~~DPDGn~iEl~e 169 (172)
.+.||+||-.||+.
T Consensus 45 vv~~~n~ng~~~~h 58 (59)
T PHA02097 45 VVKDANYNGFELVH 58 (59)
T ss_pred EEecCCCCcEEEec
Confidence 46799999999873
No 215
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=21.12 E-value=2e+02 Score=19.28 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceEEEEECCH---HHHHHHHHHCCCeEEec-CCCceEEEEECCC
Q 030725 122 RHTCIAIRDV---SKLKMILDKAGISYTLS-KSGRPAIFTRDPD 161 (172)
Q Consensus 122 ~Hi~f~V~dl---d~~~~~L~~~Gv~i~~~-~~g~~~~y~~DPD 161 (172)
.|+-|.+.+. +.+.+.|.+.|++.... ..+...+|++|.+
T Consensus 22 YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH----EEEEESSEEEEEE--HH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHH
Confidence 7999999874 45667777888877633 4566788988754
No 216
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=20.68 E-value=3.3e+02 Score=20.08 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCeEEecCCCceEEEEECCCCCEEEEEeec
Q 030725 131 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 171 (172)
Q Consensus 131 ld~~~~~L~~~Gv~i~~~~~g~~~~y~~DPDGn~iEl~e~~ 171 (172)
+.+.++..++.|++++ +-+-|..||.+-+..+|
T Consensus 17 i~aA~a~a~~~g~~Vt--------vaVVD~~G~~~a~~RmD 49 (141)
T COG3193 17 IAAAVAEAQQLGVPVT--------VAVVDAGGHLVALERMD 49 (141)
T ss_pred HHHHHHHHHHhCCceE--------EEEECCCCCEEEEEecC
Confidence 4566777777887765 34556666666666554
No 217
>PTZ00056 glutathione peroxidase; Provisional
Probab=20.47 E-value=3.9e+02 Score=20.34 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=13.1
Q ss_pred EEEEECCCCCEEEEEe
Q 030725 154 AIFTRDPDANALEFTQ 169 (172)
Q Consensus 154 ~~y~~DPDGn~iEl~e 169 (172)
..|+.|++|+++....
T Consensus 147 ~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFS 162 (199)
T ss_pred EEEEECCCCcEEEEeC
Confidence 5789999999987653
No 218
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.44 E-value=62 Score=17.24 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=13.9
Q ss_pred cCChHHHHHHhHhccCCE
Q 030725 59 GGILKKEPIRDSDKIGLE 76 (172)
Q Consensus 59 ~~dle~s~~FY~~vLG~~ 76 (172)
..|.++++++|++.|.+.
T Consensus 12 ~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALALA 29 (36)
T ss_dssp CT-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 468999999999987553
Done!