Query 030726
Match_columns 172
No_of_seqs 150 out of 442
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wff_A Riken cDNA 2810002D23 p 100.0 1E-30 3.6E-35 190.5 0.1 62 106-167 21-83 (85)
2 1wfh_A Zinc finger (AN1-like) 99.9 1.3E-27 4.5E-32 166.0 0.8 54 105-158 10-63 (64)
3 1wg2_A Zinc finger (AN1-like) 99.9 5.3E-27 1.8E-31 163.0 1.3 53 105-157 10-62 (64)
4 1wfl_A Zinc finger protein 216 99.9 5.7E-26 1.9E-30 161.7 4.4 52 105-156 20-71 (74)
5 1wfp_A Zinc finger (AN1-like) 99.9 5.6E-26 1.9E-30 161.7 1.3 54 104-157 19-72 (74)
6 1x4w_A Hypothetical protein FL 99.9 5E-26 1.7E-30 159.4 -0.5 54 104-157 9-65 (67)
7 2kzy_A ZNF216-A20, zfand5 prot 99.8 3E-19 1E-23 123.2 5.3 44 1-48 3-46 (62)
8 2c7n_A Rabex-5, GEF 1, RAB gua 99.7 2.8E-18 9.5E-23 121.7 3.3 41 4-45 6-46 (74)
9 3oj3_I Tumor necrosis factor a 99.6 7.4E-16 2.5E-20 101.4 3.2 29 15-43 18-47 (49)
10 1wfe_A Riken cDNA 2310008M20 p 99.3 1.1E-13 3.7E-18 100.8 0.9 59 106-172 21-82 (86)
11 1x4v_A Hypothetical protein LO 99.3 4.3E-13 1.5E-17 92.7 2.1 41 106-147 8-51 (63)
12 1wys_A Riken cDNA 2310008M20 p 99.2 1.9E-12 6.5E-17 92.2 2.3 41 109-150 13-56 (75)
13 2eqe_A Tumor necrosis factor, 97.9 7E-06 2.4E-10 53.4 3.0 30 14-43 14-44 (48)
14 1vfy_A Phosphatidylinositol-3- 94.2 0.023 8E-07 38.9 2.3 27 111-137 12-41 (73)
15 1wfk_A Zinc finger, FYVE domai 94.0 0.034 1.2E-06 39.6 3.0 28 110-137 9-39 (88)
16 2yw8_A RUN and FYVE domain-con 93.8 0.03 1E-06 39.1 2.3 28 110-137 19-49 (82)
17 1x4u_A Zinc finger, FYVE domai 93.6 0.044 1.5E-06 38.4 2.9 28 110-137 14-44 (84)
18 1z2q_A LM5-1; membrane protein 93.4 0.041 1.4E-06 38.6 2.4 29 109-137 20-51 (84)
19 1joc_A EEA1, early endosomal a 93.2 0.031 1E-06 42.2 1.5 28 110-137 69-99 (125)
20 1dvp_A HRS, hepatocyte growth 92.4 0.052 1.8E-06 43.9 1.9 28 110-137 161-191 (220)
21 3zyq_A Hepatocyte growth facto 91.1 0.12 4.1E-06 42.2 2.8 28 110-137 164-194 (226)
22 3t7l_A Zinc finger FYVE domain 91.0 0.084 2.9E-06 37.5 1.6 28 110-137 20-50 (90)
23 1y02_A CARP2, FYVE-ring finger 89.5 0.13 4.4E-06 38.9 1.6 41 110-150 19-65 (120)
24 2eqf_A Tumor necrosis factor, 84.2 0.52 1.8E-05 30.0 1.9 25 17-41 12-36 (46)
25 2vrw_B P95VAV, VAV1, proto-onc 83.7 0.47 1.6E-05 40.7 2.1 42 108-150 355-400 (406)
26 3mpx_A FYVE, rhogef and PH dom 81.6 0.29 9.9E-06 42.1 0.0 28 110-137 375-405 (434)
27 4b6d_A RAC GTPase-activating p 80.4 0.56 1.9E-05 31.2 1.1 24 109-132 18-44 (61)
28 3c5k_A HD6, histone deacetylas 75.9 1.2 4.1E-05 32.8 1.9 30 110-143 24-54 (109)
29 2eqg_A Tumor necrosis factor, 70.7 2.8 9.6E-05 26.9 2.4 26 17-42 13-39 (49)
30 2gmg_A Hypothetical protein PF 66.2 2.6 9.1E-05 31.3 1.8 26 119-146 62-88 (105)
31 1ptq_A Protein kinase C delta 64.1 3.8 0.00013 25.0 2.0 24 109-132 10-37 (50)
32 2enz_A NPKC-theta, protein kin 63.9 8.2 0.00028 25.1 3.8 25 109-133 22-50 (65)
33 1wd2_A Ariadne-1 protein homol 63.2 3.6 0.00012 27.0 1.9 30 109-138 5-41 (60)
34 1kbe_A Kinase suppressor of RA 61.4 2.8 9.6E-05 26.7 1.0 22 111-133 15-37 (49)
35 2yuu_A NPKC-delta, protein kin 58.9 5 0.00017 27.5 2.1 26 108-133 26-55 (83)
36 1r79_A Diacylglycerol kinase, 58.2 5.5 0.00019 28.1 2.2 23 110-132 38-65 (84)
37 3ky9_A Proto-oncogene VAV; cal 57.0 4.9 0.00017 36.4 2.2 40 108-148 527-570 (587)
38 2fnf_X Putative RAS effector N 55.2 5.8 0.0002 26.8 1.9 26 107-132 32-58 (72)
39 3uej_A NPKC-delta, protein kin 54.4 6.7 0.00023 25.5 2.0 24 109-132 19-46 (65)
40 1ef4_A Subunit N, DNA-directed 54.2 3.9 0.00013 27.1 0.8 13 110-122 3-15 (55)
41 1z60_A TFIIH basal transcripti 52.9 4 0.00014 27.2 0.7 35 112-146 17-56 (59)
42 1twf_J DNA-directed RNA polyme 51.4 5 0.00017 27.8 1.0 14 109-122 3-16 (70)
43 1faq_A RAF-1; transferase, ser 51.4 5 0.00017 24.7 1.0 24 109-133 13-37 (52)
44 2co8_A NEDD9 interacting prote 51.0 10 0.00035 25.3 2.6 29 111-139 43-73 (82)
45 1rfh_A RAS association (ralgds 50.1 5.3 0.00018 25.8 0.9 25 108-132 20-45 (59)
46 2ysj_A Tripartite motif-contai 49.9 16 0.00056 22.6 3.3 25 110-135 20-44 (63)
47 2yqq_A Zinc finger HIT domain- 48.7 10 0.00035 25.0 2.2 24 110-136 12-36 (56)
48 2lce_A B-cell lymphoma 6 prote 48.3 11 0.00037 23.5 2.2 27 109-135 16-57 (74)
49 2eli_A Protein kinase C alpha 46.9 15 0.00051 25.2 3.0 42 109-150 27-72 (85)
50 1y8f_A UNC-13 homolog A, MUNC1 46.8 11 0.00036 24.7 2.1 24 109-132 23-50 (66)
51 2ysl_A Tripartite motif-contai 46.0 18 0.00062 22.9 3.1 25 110-135 20-44 (73)
52 4ayb_N DNA-directed RNA polyme 45.2 6.2 0.00021 27.0 0.7 13 110-122 4-16 (66)
53 2d8t_A Dactylidin, ring finger 44.2 15 0.00052 23.4 2.5 48 109-157 14-64 (71)
54 3f6q_B LIM and senescent cell 42.7 6.6 0.00023 24.8 0.5 27 111-137 40-66 (72)
55 2enn_A NPKC-theta, protein kin 41.9 8.7 0.0003 26.0 1.1 26 108-133 32-61 (77)
56 1x68_A FHL5 protein; four-and- 41.3 13 0.00046 24.1 1.9 29 111-139 36-64 (76)
57 3j21_g 50S ribosomal protein L 40.9 8 0.00027 25.0 0.7 24 109-132 13-37 (51)
58 2ecv_A Tripartite motif-contai 40.6 31 0.0011 22.0 3.7 26 110-136 19-44 (85)
59 3h0g_L DNA-directed RNA polyme 39.1 18 0.00062 24.3 2.3 25 109-133 20-48 (63)
60 2cot_A Zinc finger protein 435 38.4 33 0.0011 21.3 3.5 26 109-134 17-57 (77)
61 4gne_A Histone-lysine N-methyl 38.0 14 0.00047 27.0 1.7 26 112-140 60-86 (107)
62 2kwq_A Protein MCM10 homolog; 37.7 12 0.00042 26.9 1.4 20 124-143 48-67 (92)
63 2d8x_A Protein pinch; LIM doma 36.7 9.2 0.00031 24.4 0.5 27 111-137 32-58 (70)
64 4gzn_C ZFP-57, zinc finger pro 36.4 10 0.00035 24.1 0.7 26 110-135 4-44 (60)
65 2ct2_A Tripartite motif protei 34.7 33 0.0011 22.3 3.1 26 110-135 15-43 (88)
66 2ayj_A 50S ribosomal protein L 34.7 9.8 0.00034 25.3 0.4 24 109-132 18-42 (56)
67 2ecj_A Tripartite motif-contai 34.6 32 0.0011 20.5 2.8 25 110-135 15-39 (58)
68 1x4s_A Protein FON, zinc finge 34.0 11 0.00039 25.1 0.6 26 111-136 12-39 (59)
69 1x64_A Alpha-actinin-2 associa 33.2 11 0.00038 25.3 0.5 10 111-120 26-35 (89)
70 2elq_A Zinc finger protein 406 33.0 16 0.00056 19.1 1.1 11 124-134 9-20 (36)
71 2uzg_A Ubiquitin carboxyl-term 32.9 26 0.00087 24.8 2.4 31 110-143 25-58 (97)
72 1nyp_A Pinch protein; LIM doma 31.7 12 0.00042 23.5 0.5 27 111-137 32-58 (66)
73 1x61_A Thyroid receptor intera 31.6 13 0.00044 23.7 0.6 26 111-136 34-59 (72)
74 1x4l_A Skeletal muscle LIM-pro 31.5 13 0.00045 23.7 0.6 27 111-137 36-62 (72)
75 1bbo_A Human enhancer-binding 31.4 21 0.00073 20.6 1.5 11 124-134 29-40 (57)
76 2yur_A Retinoblastoma-binding 31.3 36 0.0012 21.8 2.8 26 110-136 15-41 (74)
77 2ecw_A Tripartite motif-contai 31.2 48 0.0016 21.1 3.4 25 110-135 19-43 (85)
78 3uk3_C Zinc finger protein 217 30.9 21 0.00071 20.7 1.4 11 110-120 4-14 (57)
79 1g47_A Pinch protein; LIM doma 30.8 13 0.00044 24.0 0.5 24 112-135 41-64 (77)
80 2ee8_A Protein ODD-skipped-rel 30.7 43 0.0015 21.8 3.2 27 109-135 16-57 (106)
81 2zet_C Melanophilin; complex, 30.7 20 0.00068 27.7 1.6 30 109-138 67-100 (153)
82 1yop_A KTI11P; zinc finger, me 30.7 12 0.00042 26.4 0.3 14 122-135 21-34 (83)
83 1vd4_A Transcription initiatio 30.1 16 0.00056 22.4 0.9 26 109-134 13-50 (62)
84 2adr_A ADR1; transcription reg 30.1 23 0.00079 20.8 1.5 11 124-134 30-41 (60)
85 1l1o_C Replication protein A 7 30.1 13 0.00044 28.9 0.4 30 110-139 43-79 (181)
86 2ea6_A Ring finger protein 4; 30.0 29 0.001 21.3 2.1 27 109-135 14-46 (69)
87 2ehe_A Four and A half LIM dom 30.0 26 0.00089 22.8 1.9 28 111-138 44-71 (82)
88 2jr7_A DPH3 homolog; DESR1, CS 29.6 13 0.00046 26.6 0.4 12 122-133 21-32 (89)
89 1x4k_A Skeletal muscle LIM-pro 29.4 15 0.00051 23.3 0.6 26 111-136 34-59 (72)
90 2csy_A Zinc finger protein 183 29.4 39 0.0013 21.9 2.7 25 110-135 15-39 (81)
91 2lv2_A Insulinoma-associated p 29.3 29 0.00099 23.5 2.1 27 109-135 27-68 (85)
92 2row_A RHO-associated protein 28.9 13 0.00044 26.2 0.2 42 108-149 33-83 (84)
93 1znf_A 31ST zinc finger from X 28.9 15 0.00052 17.6 0.5 11 125-135 2-13 (27)
94 1e0f_I Haemadin, factor IIA; c 28.9 28 0.00095 22.6 1.8 30 121-150 13-42 (57)
95 1zbd_B Rabphilin-3A; G protein 28.4 27 0.00091 26.3 1.9 30 109-138 54-87 (134)
96 1x62_A C-terminal LIM domain p 28.3 10 0.00034 25.0 -0.4 23 112-134 43-65 (79)
97 2m0d_A Zinc finger and BTB dom 28.2 16 0.00056 17.7 0.5 10 125-134 4-14 (30)
98 1e4u_A Transcriptional repress 27.9 19 0.00065 24.2 0.9 25 111-135 12-39 (78)
99 2kvf_A Zinc finger and BTB dom 27.8 17 0.00059 17.7 0.6 12 124-135 3-15 (28)
100 2kvh_A Zinc finger and BTB dom 27.6 17 0.00058 17.7 0.5 10 125-134 4-14 (27)
101 2gqj_A Zinc finger protein KIA 27.4 19 0.00064 24.0 0.8 13 109-121 23-35 (98)
102 2lvu_A Zinc finger and BTB dom 33.4 13 0.00044 18.0 0.0 12 125-136 3-15 (26)
103 2db6_A SH3 and cysteine rich d 27.3 19 0.00066 24.0 0.9 25 109-133 27-55 (74)
104 1ard_A Yeast transcription fac 27.3 16 0.00054 17.8 0.3 10 125-134 3-13 (29)
105 1jm7_B BARD1, BRCA1-associated 27.2 27 0.00092 24.6 1.7 36 110-147 22-60 (117)
106 1x5w_A Zinc finger protein 64, 27.2 28 0.00097 21.2 1.6 12 109-120 8-19 (70)
107 1wyh_A SLIM 2, skeletal muscle 26.7 17 0.00058 23.0 0.5 27 111-137 34-60 (72)
108 2m0f_A Zinc finger and BTB dom 26.7 18 0.0006 17.5 0.5 10 125-134 3-13 (29)
109 2cu8_A Cysteine-rich protein 2 26.6 25 0.00085 22.7 1.3 25 111-135 37-61 (76)
110 1wge_A Hypothetical protein 26 26.4 16 0.00056 25.7 0.4 12 122-133 28-39 (83)
111 2dar_A PDZ and LIM domain prot 26.3 18 0.00063 24.2 0.6 11 110-120 25-35 (90)
112 1x6e_A Zinc finger protein 24; 26.2 24 0.00084 21.7 1.2 12 109-120 13-24 (72)
113 1a7i_A QCRP2 (LIM1); LIM domai 25.9 17 0.00057 23.8 0.4 25 112-136 36-60 (81)
114 2kvg_A Zinc finger and BTB dom 25.7 17 0.0006 17.8 0.3 11 124-134 3-14 (27)
115 2elo_A Zinc finger protein 406 25.7 23 0.00077 18.6 0.8 10 124-133 9-19 (37)
116 2d8z_A Four and A half LIM dom 25.6 19 0.00065 22.8 0.6 26 111-136 32-57 (70)
117 2elx_A Zinc finger protein 406 25.6 23 0.00079 18.1 0.8 11 124-134 7-18 (35)
118 1x63_A Skeletal muscle LIM-pro 25.5 19 0.00065 23.5 0.6 27 111-137 44-70 (82)
119 1klr_A Zinc finger Y-chromosom 25.2 18 0.0006 17.6 0.3 10 125-134 3-13 (30)
120 2djb_A Polycomb group ring fin 25.1 47 0.0016 21.0 2.5 25 110-135 15-40 (72)
121 1p7a_A BF3, BKLF, kruppel-like 25.0 25 0.00085 18.4 0.9 9 125-133 12-21 (37)
122 2m0e_A Zinc finger and BTB dom 24.8 19 0.00064 17.3 0.3 11 125-135 3-14 (29)
123 2ctd_A Zinc finger protein 512 24.5 25 0.00085 23.8 1.0 11 110-120 34-44 (96)
124 1srk_A Zinc finger protein ZFP 24.4 25 0.00085 18.1 0.8 11 124-134 7-18 (35)
125 1paa_A Yeast transcription fac 24.4 19 0.00064 17.7 0.3 11 125-135 3-14 (30)
126 2csz_A Synaptotagmin-like prot 24.2 34 0.0012 23.8 1.7 31 109-139 24-58 (76)
127 2d8y_A Eplin protein; LIM doma 23.6 18 0.00062 24.3 0.2 23 112-134 44-66 (91)
128 3u50_C Telomerase-associated p 23.6 16 0.00056 28.7 -0.1 29 111-139 43-75 (172)
129 3l11_A E3 ubiquitin-protein li 23.6 28 0.00095 24.2 1.2 24 111-135 16-39 (115)
130 1twf_L ABC10-alpha, DNA-direct 23.5 22 0.00074 24.2 0.5 23 109-131 27-53 (70)
131 2ect_A Ring finger protein 126 23.5 70 0.0024 20.3 3.1 27 110-136 15-43 (78)
132 2i50_A Ubiquitin carboxyl-term 23.5 30 0.001 25.8 1.3 27 110-136 28-67 (126)
133 2ecy_A TNF receptor-associated 23.4 43 0.0015 20.8 2.0 26 110-136 15-40 (66)
134 1rik_A E6APC1 peptide; E6-bind 23.2 23 0.00079 17.2 0.5 11 125-135 3-14 (29)
135 2g45_A Ubiquitin carboxyl-term 22.9 61 0.0021 24.2 3.0 28 110-139 34-62 (129)
136 2lvt_A Zinc finger and BTB dom 28.6 18 0.00061 17.8 0.0 12 125-136 3-15 (29)
137 1ffk_W Ribosomal protein L37AE 22.7 23 0.00077 24.5 0.5 30 107-136 24-58 (73)
138 3cc2_Z 50S ribosomal protein L 22.6 27 0.00094 26.2 1.0 30 108-137 58-92 (116)
139 2ida_A Hypothetical protein; z 22.5 48 0.0016 24.0 2.3 27 110-136 18-47 (102)
140 2elt_A Zinc finger protein 406 22.5 33 0.0011 17.7 1.1 10 124-133 9-19 (36)
141 2elp_A Zinc finger protein 406 22.2 33 0.0011 17.9 1.1 11 124-134 9-20 (37)
142 2ecn_A Ring finger protein 141 21.8 73 0.0025 19.8 2.9 24 110-135 15-38 (70)
143 2egq_A FHL1 protein; LIM domai 21.2 24 0.00081 22.7 0.4 26 111-136 47-72 (77)
144 2elv_A Zinc finger protein 406 21.1 32 0.0011 17.9 0.8 11 124-134 9-20 (36)
145 2elm_A Zinc finger protein 406 20.8 35 0.0012 18.1 1.0 12 124-135 9-21 (37)
146 4ayb_P DNA-directed RNA polyme 20.7 35 0.0012 21.9 1.0 11 112-122 5-15 (48)
147 1iml_A CRIP, cysteine rich int 20.5 39 0.0013 21.7 1.3 25 111-135 28-52 (76)
148 2ep4_A Ring finger protein 24; 20.5 82 0.0028 19.8 2.9 26 110-135 15-42 (74)
149 1x3h_A Leupaxin; paxillin fami 20.5 27 0.00093 22.6 0.5 27 111-137 42-68 (80)
150 2ct7_A Ring finger protein 31; 20.5 34 0.0011 23.3 1.0 17 124-140 43-60 (86)
151 2ckl_B Ubiquitin ligase protei 20.2 33 0.0011 25.5 1.0 25 110-135 54-79 (165)
No 1
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.96 E-value=1e-30 Score=190.55 Aligned_cols=62 Identities=44% Similarity=0.947 Sum_probs=59.0
Q ss_pred CCCCCCCccccccccccc-ceeeecCCccccCCCCCCCCCCcccchHHHHHHHHHhCCccccc
Q 030726 106 PKEGPSRCSSCKKRVGLT-GFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAE 167 (172)
Q Consensus 106 ~~~~~~rC~~C~kkvgl~-gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l~k~Np~v~~~ 167 (172)
+++.++||+.|+|||||+ +|+||||++||+.|||+|+|+|+||||++||++|+|+||+|+++
T Consensus 21 ~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~ 83 (85)
T 1wff_A 21 KKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS 83 (85)
T ss_dssp CCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred CcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence 456689999999999996 99999999999999999999999999999999999999999986
No 2
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.93 E-value=1.3e-27 Score=166.00 Aligned_cols=54 Identities=50% Similarity=1.179 Sum_probs=50.6
Q ss_pred CCCCCCCCcccccccccccceeeecCCccccCCCCCCCCCCcccchHHHHHHHH
Q 030726 105 KPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAII 158 (172)
Q Consensus 105 ~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l~ 158 (172)
+++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|+
T Consensus 10 ~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~ 63 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred CCCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence 446678999999999999999999999999999999999999999999999875
No 3
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.92 E-value=5.3e-27 Score=162.99 Aligned_cols=53 Identities=45% Similarity=1.122 Sum_probs=49.4
Q ss_pred CCCCCCCCcccccccccccceeeecCCccccCCCCCCCCCCcccchHHHHHHH
Q 030726 105 KPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 157 (172)
Q Consensus 105 ~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l 157 (172)
+++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|
T Consensus 10 ~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS 62 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred CCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence 34456899999999999999999999999999999999999999999999876
No 4
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.92 E-value=5.7e-26 Score=161.70 Aligned_cols=52 Identities=62% Similarity=1.308 Sum_probs=48.1
Q ss_pred CCCCCCCCcccccccccccceeeecCCccccCCCCCCCCCCcccchHHHHHH
Q 030726 105 KPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDA 156 (172)
Q Consensus 105 ~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~ 156 (172)
..+..+|||+.|+|||||++|.||||++||+.|||+|.|+|+||||++||++
T Consensus 20 ~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~ 71 (74)
T 1wfl_A 20 LPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEASGP 71 (74)
T ss_dssp CCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSSCC
T ss_pred cCCCcCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhhhchhh
Confidence 3455689999999999999999999999999999999999999999999864
No 5
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.91 E-value=5.6e-26 Score=161.72 Aligned_cols=54 Identities=48% Similarity=1.136 Sum_probs=50.1
Q ss_pred CCCCCCCCCcccccccccccceeeecCCccccCCCCCCCCCCcccchHHHHHHH
Q 030726 104 AKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 157 (172)
Q Consensus 104 ~~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l 157 (172)
.++++.++||+.|+|||||++|+||||++||+.|||+|+|+|+||||++||++|
T Consensus 19 ~~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPS 72 (74)
T ss_dssp CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCCCCC
T ss_pred ccCcccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHHhHHhh
Confidence 344667899999999999999999999999999999999999999999999876
No 6
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5e-26 Score=159.39 Aligned_cols=54 Identities=28% Similarity=0.741 Sum_probs=49.3
Q ss_pred CCCCCCCCCcccccccccccc---eeeecCCccccCCCCCCCCCCcccchHHHHHHH
Q 030726 104 AKPKEGPSRCSSCKKRVGLTG---FKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 157 (172)
Q Consensus 104 ~~~~~~~~rC~~C~kkvgl~g---f~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l 157 (172)
.++++.++||+.|+|||||++ |+||||++||+.|||+|+|+|+||||++||+.|
T Consensus 9 ~~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~~ 65 (67)
T 1x4w_A 9 RSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS 65 (67)
T ss_dssp CCSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCSSCCCC
T ss_pred ccCCccCCcchhhCCeecccccCceEecCCCEehhccCCccccCCcccccccccccc
Confidence 345667899999999999995 999999999999999999999999999999764
No 7
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=99.77 E-value=3e-19 Score=123.17 Aligned_cols=44 Identities=39% Similarity=0.936 Sum_probs=36.4
Q ss_pred CCCCccCCCCCCCCccccccCCCCCCccccCCcchhhhHHHHHHHhhh
Q 030726 1 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQA 48 (172)
Q Consensus 1 M~~~~~~~q~~~e~p~lC~n~CGFfGs~at~n~CSkCyr~~~~~~~~~ 48 (172)
|+++.. + |++|+||+|||||||||+|+||||||||+++.+++++
T Consensus 3 M~~e~~---~-~~~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~ 46 (62)
T 2kzy_A 3 MAQETN---Q-TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS 46 (62)
T ss_dssp CCCCCC---C-CSCCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHH
T ss_pred hhhccc---C-CCcccchhhCCCCcCChhhcCcCHHHHHHHHHhhhcc
Confidence 665432 3 6789999999999999999999999999998766543
No 8
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=99.71 E-value=2.8e-18 Score=121.71 Aligned_cols=41 Identities=29% Similarity=0.795 Sum_probs=26.8
Q ss_pred CccCCCCCCCCccccccCCCCCCccccCCcchhhhHHHHHHH
Q 030726 4 DETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQ 45 (172)
Q Consensus 4 ~~~~~q~~~e~p~lC~n~CGFfGs~at~n~CSkCyr~~~~~~ 45 (172)
+.++++. |++|+||+|||||||||+|+||||||||+.+.+.
T Consensus 6 ~~~~~q~-pe~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~ 46 (74)
T 2c7n_A 6 ERRGIHV-DQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 46 (74)
T ss_dssp -------------CCTTCSSSCCCGGGTTCCHHHHHHHHHHH
T ss_pred hhccCCC-CCcchhHHhCCCCCCChhhcCccHHHHHHHHHHH
Confidence 3455677 8899999999999999999999999999986543
No 9
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=99.57 E-value=7.4e-16 Score=101.36 Aligned_cols=29 Identities=21% Similarity=0.644 Sum_probs=27.0
Q ss_pred ccccc-cCCCCCCccccCCcchhhhHHHHH
Q 030726 15 PILCI-NNCGFFGSVATMNMCSKCYKDIML 43 (172)
Q Consensus 15 p~lC~-n~CGFfGs~at~n~CSkCyr~~~~ 43 (172)
..||+ |||||||||+|+|||||||||++.
T Consensus 18 q~lC~~ngCGFfG~p~t~n~CSkCyre~~e 47 (49)
T 3oj3_I 18 TSKCRKAGCVYFGTPENKGFCTLCFIEYRE 47 (49)
T ss_dssp CCBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred ccccccCCCCCccCcccCCcchHHHHHHHH
Confidence 37999 999999999999999999999864
No 10
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.35 E-value=1.1e-13 Score=100.82 Aligned_cols=59 Identities=20% Similarity=0.446 Sum_probs=50.0
Q ss_pred CCCCCCCccc--ccccccccceeee-cCCccccCCCCCCCCCCcccchHHHHHHHHHhCCcccccccccC
Q 030726 106 PKEGPSRCSS--CKKRVGLTGFKCR-CGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDKI 172 (172)
Q Consensus 106 ~~~~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~~r~~l~k~Np~v~~~Kl~kI 172 (172)
.+..++||.. |+++ +|++|.|+ ||.+||..|||++.|+|+.. .+.+.++...+.++.+|
T Consensus 21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~-------~~~k~~~~~~~~l~~~~ 82 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKL-------EVAKPRMAATQKLVRSG 82 (86)
T ss_dssp SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSS-------SCCCSSCCCCCCCSSCS
T ss_pred cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCC-------cccccchHHHHHHHHHH
Confidence 3456799999 9998 88999999 99999999999999999984 34677888877777765
No 11
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.3e-13 Score=92.70 Aligned_cols=41 Identities=27% Similarity=0.761 Sum_probs=37.4
Q ss_pred CCCCCCCccc--ccccccccceeee-cCCccccCCCCCCCCCCcc
Q 030726 106 PKEGPSRCSS--CKKRVGLTGFKCR-CGNLYCVSHRYSDKHNCPF 147 (172)
Q Consensus 106 ~~~~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~f 147 (172)
.+...+||.. |+++ +|++|.|+ |+.+||..|||+|.|+|+-
T Consensus 8 ~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR~~e~H~C~~ 51 (63)
T 1x4v_A 8 RKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHRHPLDHDCSG 51 (63)
T ss_dssp CCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHHSTTSSCCCS
T ss_pred CcccCCCCCccCCCCC-CccceECCCCCcccCcccCCccCCcCCC
Confidence 4556899999 9998 99999999 9999999999999999973
No 12
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.24 E-value=1.9e-12 Score=92.21 Aligned_cols=41 Identities=29% Similarity=0.788 Sum_probs=38.4
Q ss_pred CCCCccc--ccccccccceeee-cCCccccCCCCCCCCCCcccch
Q 030726 109 GPSRCSS--CKKRVGLTGFKCR-CGNLYCVSHRYSDKHNCPFDYR 150 (172)
Q Consensus 109 ~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 150 (172)
..+||.. |+++ +|++|+|+ |+.+||..|||++.|+|+++++
T Consensus 13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~ 56 (75)
T 1wys_A 13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHRSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTCSSGGGTCCCCSS
T ss_pred cCCCcCcccCCCc-cceeeECcccCcCcCcccCCccccCCCCCcc
Confidence 4689998 9987 89999999 9999999999999999999986
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=97.90 E-value=7e-06 Score=53.35 Aligned_cols=30 Identities=23% Similarity=0.681 Sum_probs=26.8
Q ss_pred Cccccc-cCCCCCCccccCCcchhhhHHHHH
Q 030726 14 GPILCI-NNCGFFGSVATMNMCSKCYKDIML 43 (172)
Q Consensus 14 ~p~lC~-n~CGFfGs~at~n~CSkCyr~~~~ 43 (172)
+...|. .||-|||+|.+.++|..||.++..
T Consensus 14 gt~kCRk~GC~fFGTpen~GFCTlCf~eyre 44 (48)
T 2eqe_A 14 GTSKCRKAGCVYFGTPENKGFCTLCFIEYSG 44 (48)
T ss_dssp CSSBCSSTTCCSBCCTTTTTCCHHHHHHHHS
T ss_pred ccchhhhcCCCcccCcccCceeeeehhhhhc
Confidence 446897 999999999999999999999853
No 14
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=94.17 E-value=0.023 Score=38.85 Aligned_cols=27 Identities=37% Similarity=1.062 Sum_probs=24.0
Q ss_pred CCccccccccccc--ceeee-cCCccccCC
Q 030726 111 SRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
..|..|+++.+++ -..|| ||.+||+.+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~C 41 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEH 41 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccc
Confidence 4799999999997 49999 999999875
No 15
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=94.04 E-value=0.034 Score=39.60 Aligned_cols=28 Identities=32% Similarity=0.917 Sum_probs=24.5
Q ss_pred CCCcccccccccccc--eeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLTG--FKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+++. ..|| ||.+||+.+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 458999999999974 8999 999999874
No 16
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=93.83 E-value=0.03 Score=39.13 Aligned_cols=28 Identities=29% Similarity=1.038 Sum_probs=24.1
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHH
Confidence 45799999999987 48999 999999864
No 17
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.61 E-value=0.044 Score=38.35 Aligned_cols=28 Identities=25% Similarity=0.755 Sum_probs=24.4
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|.++.+|+ --.|| ||.+||+..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 46899999999987 48999 999999865
No 18
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=93.38 E-value=0.041 Score=38.60 Aligned_cols=29 Identities=28% Similarity=0.694 Sum_probs=24.7
Q ss_pred CCCCccccccccccc--ceeee-cCCccccCC
Q 030726 109 GPSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
....|..|+++.+++ -..|| ||.+||+.+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 51 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDC 51 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHH
Confidence 346899999999997 48999 999999863
No 19
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=93.17 E-value=0.031 Score=42.18 Aligned_cols=28 Identities=36% Similarity=0.991 Sum_probs=24.1
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHH
Confidence 45899999999986 48999 999999864
No 20
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=92.35 E-value=0.052 Score=43.85 Aligned_cols=28 Identities=29% Similarity=0.858 Sum_probs=24.4
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHH
Confidence 36899999999987 49999 999999864
No 21
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=91.10 E-value=0.12 Score=42.18 Aligned_cols=28 Identities=29% Similarity=0.990 Sum_probs=24.4
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTT
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhh
Confidence 45899999999987 59999 999999864
No 22
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.05 E-value=0.084 Score=37.52 Aligned_cols=28 Identities=29% Similarity=0.915 Sum_probs=24.1
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+|+ -..|| ||.+||+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~C 50 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVC 50 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcc
Confidence 45799999999987 59999 999999763
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=89.51 E-value=0.13 Score=38.89 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=28.7
Q ss_pred CCCccccccccccc--ceeee-cCCccccC---CCCCCCCCCcccch
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVS---HRYSDKHNCPFDYR 150 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~---HRy~e~H~C~fDyk 150 (172)
...|..|+++.+++ --.|| ||.+||+. |+.+..--|..=|.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 36899999999886 48999 99999875 46665566665554
No 24
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=84.17 E-value=0.52 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.568 Sum_probs=22.0
Q ss_pred ccccCCCCCCccccCCcchhhhHHH
Q 030726 17 LCINNCGFFGSVATMNMCSKCYKDI 41 (172)
Q Consensus 17 lC~n~CGFfGs~at~n~CSkCyr~~ 41 (172)
-++.+|..|||...+++|.-||.-.
T Consensus 12 C~apgCdhygN~kc~GyCNeC~~fK 36 (46)
T 2eqf_A 12 CRAPACDHFGNAKCNGYCNECFQFK 36 (46)
T ss_dssp CSSTTCCSCCBGGGTBSCHHHHHHH
T ss_pred ccCcccccccchhhhhhhHHHHhhH
Confidence 4588999999999999999999643
No 25
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=83.69 E-value=0.47 Score=40.71 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCCCcccccccc-ccc--ceeee-cCCccccCCCCCCCCCCcccch
Q 030726 108 EGPSRCSSCKKRV-GLT--GFKCR-CGNLYCVSHRYSDKHNCPFDYR 150 (172)
Q Consensus 108 ~~~~rC~~C~kkv-gl~--gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 150 (172)
..+..|..|++.+ |+. |++|| ||.++|..-.-.=. .|.-+.-
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~~~~~ 400 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCGRHGQ 400 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC-----
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCCCCch
Confidence 4578999999988 674 89999 99999976422111 3876644
No 26
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=81.56 E-value=0.29 Score=42.15 Aligned_cols=28 Identities=29% Similarity=0.735 Sum_probs=0.0
Q ss_pred CCCccccccccccc--ceeee-cCCccccCC
Q 030726 110 PSRCSSCKKRVGLT--GFKCR-CGNLYCVSH 137 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 137 (172)
...|..|+++.+++ ...|| ||.+||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp -------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhh
Confidence 46899999999986 59999 999998653
No 27
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=80.43 E-value=0.56 Score=31.17 Aligned_cols=24 Identities=38% Similarity=0.976 Sum_probs=19.4
Q ss_pred CCCCcccccccccc--cceeee-cCCc
Q 030726 109 GPSRCSSCKKRVGL--TGFKCR-CGNL 132 (172)
Q Consensus 109 ~~~rC~~C~kkvgl--~gf~Cr-Cg~~ 132 (172)
.+..|..|++++++ .+++|| |+.+
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~~ 44 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRVV 44 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSCE
T ss_pred CCcccccccCEEEEeeEeeECCCCCCe
Confidence 45789999999987 589999 8643
No 28
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=75.87 E-value=1.2 Score=32.78 Aligned_cols=30 Identities=30% Similarity=0.773 Sum_probs=23.4
Q ss_pred CCCcccccccccccceeee-cCCccccCCCCCCCC
Q 030726 110 PSRCSSCKKRVGLTGFKCR-CGNLYCVSHRYSDKH 143 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H 143 (172)
..+|..|...-++ +.|- ||+++|+ ||+..|
T Consensus 24 ~~~C~~C~~~~~~--W~CL~CG~vgCg--r~~~~H 54 (109)
T 3c5k_A 24 TQPCGDCGTIQEN--WVCLSCYQVYCG--RYINGH 54 (109)
T ss_dssp TCCCTTTCCCSSE--EEETTTCCEEEC--TTTTCH
T ss_pred CCcCccccCCCCe--eeeeecCccccC--CCcChH
Confidence 4689999987665 6786 9999998 565555
No 29
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=70.71 E-value=2.8 Score=26.94 Aligned_cols=26 Identities=38% Similarity=0.774 Sum_probs=22.0
Q ss_pred cc-ccCCCCCCccccCCcchhhhHHHH
Q 030726 17 LC-INNCGFFGSVATMNMCSKCYKDIM 42 (172)
Q Consensus 17 lC-~n~CGFfGs~at~n~CSkCyr~~~ 42 (172)
.| ..+|-||=|-.|+-+|-.||...+
T Consensus 13 kCeTPnCpF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 13 KCETPNCPFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCSSTTCCSBCCTTTTTSCHHHHHHHH
T ss_pred eecCCCCCeEEEecCccchHHHHHHHh
Confidence 45 358999999999999999998554
No 30
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=66.15 E-value=2.6 Score=31.25 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=17.9
Q ss_pred cccccceeee-cCCccccCCCCCCCCCCc
Q 030726 119 RVGLTGFKCR-CGNLYCVSHRYSDKHNCP 146 (172)
Q Consensus 119 kvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~ 146 (172)
+|-+..++|+ ||++| .-+......|+
T Consensus 62 ~L~v~p~~C~~CG~~F--~~~~~kPsrCP 88 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVF--KAEINIPSRCP 88 (105)
T ss_dssp EEEECCCBBTTTCCBC--CCCSSCCSSCS
T ss_pred EEEEECcChhhCcCee--cccCCCCCCCc
Confidence 5666789998 99999 33444555554
No 31
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=64.14 E-value=3.8 Score=25.02 Aligned_cols=24 Identities=42% Similarity=1.046 Sum_probs=18.5
Q ss_pred CCCCcccccccc-cc--cceeee-cCCc
Q 030726 109 GPSRCSSCKKRV-GL--TGFKCR-CGNL 132 (172)
Q Consensus 109 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 132 (172)
.+..|..|++.| || .|++|+ |+.+
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 467899999988 34 489998 7654
No 32
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=63.86 E-value=8.2 Score=25.09 Aligned_cols=25 Identities=40% Similarity=0.976 Sum_probs=19.4
Q ss_pred CCCCcccccccc-cc--cceeee-cCCcc
Q 030726 109 GPSRCSSCKKRV-GL--TGFKCR-CGNLY 133 (172)
Q Consensus 109 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 133 (172)
.+..|..|++.| || .|++|+ |+.+.
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred CCcCchhcChhheecCCcccccCCCCCcc
Confidence 467899999987 44 489998 87664
No 33
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.21 E-value=3.6 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.699 Sum_probs=24.6
Q ss_pred CCCCcccccccccccc----eeee---cCCccccCCC
Q 030726 109 GPSRCSSCKKRVGLTG----FKCR---CGNLYCVSHR 138 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~g----f~Cr---Cg~~FC~~HR 138 (172)
...+|..|+..|.+.+ ..|+ |+..||..=.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~ 41 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCL 41 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSC
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcC
Confidence 4568999999988863 8998 9999998654
No 34
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=61.37 E-value=2.8 Score=26.71 Aligned_cols=22 Identities=32% Similarity=0.860 Sum_probs=17.7
Q ss_pred CCcccccccccccceeee-cCCcc
Q 030726 111 SRCSSCKKRVGLTGFKCR-CGNLY 133 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~Cr-Cg~~F 133 (172)
..|..|+|.| ..|++|+ |++.+
T Consensus 15 t~C~~C~k~i-~~G~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSM-IFGVKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSS-CCEEEETTTTEEE
T ss_pred cCccccCcee-ECcCCCCCCCCcc
Confidence 5699999988 4789998 77654
No 35
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.95 E-value=5 Score=27.49 Aligned_cols=26 Identities=50% Similarity=1.071 Sum_probs=20.2
Q ss_pred CCCCCcccccccc-cc--cceeee-cCCcc
Q 030726 108 EGPSRCSSCKKRV-GL--TGFKCR-CGNLY 133 (172)
Q Consensus 108 ~~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 133 (172)
..+..|..|++.| || .|++|+ |+.++
T Consensus 26 ~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SSCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCCcChhhcChhhccccccccccCCcCCee
Confidence 3567899999988 44 489998 87664
No 36
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=58.21 E-value=5.5 Score=28.06 Aligned_cols=23 Identities=26% Similarity=0.910 Sum_probs=18.1
Q ss_pred CCCcccccccc----cccceeee-cCCc
Q 030726 110 PSRCSSCKKRV----GLTGFKCR-CGNL 132 (172)
Q Consensus 110 ~~rC~~C~kkv----gl~gf~Cr-Cg~~ 132 (172)
..+|..|+|.+ +|.||+|. |+.+
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~ 65 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAM 65 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCE
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChh
Confidence 36899999985 56899997 7655
No 37
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=56.96 E-value=4.9 Score=36.36 Aligned_cols=40 Identities=20% Similarity=0.462 Sum_probs=28.6
Q ss_pred CCCCCcccccccc-ccc--ceeee-cCCccccCCCCCCCCCCccc
Q 030726 108 EGPSRCSSCKKRV-GLT--GFKCR-CGNLYCVSHRYSDKHNCPFD 148 (172)
Q Consensus 108 ~~~~rC~~C~kkv-gl~--gf~Cr-Cg~~FC~~HRy~e~H~C~fD 148 (172)
..+..|..|++.+ ||. |++|+ ||...|....-.= ..|...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~ 570 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCGRH 570 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC---
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCCCC
Confidence 3568899999987 775 89998 9999887754432 367544
No 38
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=55.18 E-value=5.8 Score=26.77 Aligned_cols=26 Identities=27% Similarity=0.733 Sum_probs=20.9
Q ss_pred CCCCCCcccccccccccceeee-cCCc
Q 030726 107 KEGPSRCSSCKKRVGLTGFKCR-CGNL 132 (172)
Q Consensus 107 ~~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 132 (172)
-..+..|..|++.|.-.|++|+ ||.+
T Consensus 32 ~~~pt~C~~C~~~l~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 32 RGGPGWCDLCGREVLRQALRCANCKFT 58 (72)
T ss_dssp CSSCCBCTTTSSBCSSCCEECTTSSCE
T ss_pred CCCCcchhhhhHHHHhCcCccCCCCCe
Confidence 3457889999999955699998 8765
No 39
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=54.36 E-value=6.7 Score=25.47 Aligned_cols=24 Identities=42% Similarity=1.046 Sum_probs=18.5
Q ss_pred CCCCcccccccc-cc--cceeee-cCCc
Q 030726 109 GPSRCSSCKKRV-GL--TGFKCR-CGNL 132 (172)
Q Consensus 109 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 132 (172)
.+..|..|++.| || .|++|+ |+.+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 46 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 46 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCcccccChhhhccCceeeECCCCCCe
Confidence 467899999987 55 489998 7654
No 40
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=54.25 E-value=3.9 Score=27.12 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=11.0
Q ss_pred CCCcccccccccc
Q 030726 110 PSRCSSCKKRVGL 122 (172)
Q Consensus 110 ~~rC~~C~kkvgl 122 (172)
|.||++|+|-+|-
T Consensus 3 PVRCFTCGkvi~~ 15 (55)
T 1ef4_A 3 PVRCLSCGKPVSA 15 (55)
T ss_dssp SSSCSCTTSCCHH
T ss_pred CeecCCCCCChhH
Confidence 6799999998764
No 41
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.89 E-value=4 Score=27.17 Aligned_cols=35 Identities=29% Similarity=0.818 Sum_probs=24.3
Q ss_pred Ccccccccccccc-eeee-cCCccccC---CCCCCCCCCc
Q 030726 112 RCSSCKKRVGLTG-FKCR-CGNLYCVS---HRYSDKHNCP 146 (172)
Q Consensus 112 rC~~C~kkvgl~g-f~Cr-Cg~~FC~~---HRy~e~H~C~ 146 (172)
.|+.|.+.+.-.+ |.|. |+..||.. -=+-.-|+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CP 56 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCP 56 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSS
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCc
Confidence 4999999985544 9995 99999952 1222356654
No 42
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=51.44 E-value=5 Score=27.78 Aligned_cols=14 Identities=57% Similarity=0.869 Sum_probs=11.8
Q ss_pred CCCCcccccccccc
Q 030726 109 GPSRCSSCKKRVGL 122 (172)
Q Consensus 109 ~~~rC~~C~kkvgl 122 (172)
.|.||++|+|-+|-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 36799999998875
No 43
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=51.40 E-value=5 Score=24.72 Aligned_cols=24 Identities=33% Similarity=0.897 Sum_probs=19.2
Q ss_pred CCCCcccccccccccceeee-cCCcc
Q 030726 109 GPSRCSSCKKRVGLTGFKCR-CGNLY 133 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~gf~Cr-Cg~~F 133 (172)
.+..|..|++.|- .|++|+ |+...
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCB
T ss_pred CCcCCCCcccccc-cCCEeCCCCCeE
Confidence 4678999999875 799998 87654
No 44
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.98 E-value=10 Score=25.29 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=17.8
Q ss_pred CCcccccccccccceee--ecCCccccCCCC
Q 030726 111 SRCSSCKKRVGLTGFKC--RCGNLYCVSHRY 139 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~C--rCg~~FC~~HRy 139 (172)
-+|..|++.|....|.. +=|.+||..|-.
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 45666777666655553 456777766654
No 45
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=50.06 E-value=5.3 Score=25.83 Aligned_cols=25 Identities=28% Similarity=0.727 Sum_probs=20.0
Q ss_pred CCCCCcccccccccccceeee-cCCc
Q 030726 108 EGPSRCSSCKKRVGLTGFKCR-CGNL 132 (172)
Q Consensus 108 ~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 132 (172)
..+..|..|++.|.-.|++|+ |+.+
T Consensus 20 ~~pt~C~~C~~~i~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 20 GGPGWCDLCGREVLRQALRCANCKFT 45 (59)
T ss_dssp SCCEECTTTCSEECSCCEECTTTSCE
T ss_pred CCCeEchhcchhhhhCccEeCCCCCe
Confidence 456789999999954699998 7654
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.91 E-value=16 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.591 Sum_probs=18.1
Q ss_pred CCCcccccccccccceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
...|..|...+.- ...-.||++||.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 44 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCL 44 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchH
Confidence 4679999865543 344489999996
No 47
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.70 E-value=10 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.768 Sum_probs=19.8
Q ss_pred CCCcccccccccccceee-ecCCccccC
Q 030726 110 PSRCSSCKKRVGLTGFKC-RCGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~C-rCg~~FC~~ 136 (172)
...|..|+. ..-|+| ||+..||++
T Consensus 12 ~~~C~vC~~---~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 12 TVVCVICLE---KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCCTTTCS---CCSEECTTTCCEESSH
T ss_pred CCccCcCcC---CCeeeCCCCCCCeeCH
Confidence 457999997 556999 699999986
No 48
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.26 E-value=11 Score=23.53 Aligned_cols=27 Identities=22% Similarity=0.817 Sum_probs=18.4
Q ss_pred CCCCcccccccccc--------------cceeee-cCCcccc
Q 030726 109 GPSRCSSCKKRVGL--------------TGFKCR-CGNLYCV 135 (172)
Q Consensus 109 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC~ 135 (172)
.+-.|..|+|.... ..|.|. ||..|-.
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 46789999887542 148886 7776643
No 49
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.87 E-value=15 Score=25.23 Aligned_cols=42 Identities=26% Similarity=0.540 Sum_probs=29.1
Q ss_pred CCCCcccccccc-cc--cceeee-cCCccccCCCCCCCCCCcccch
Q 030726 109 GPSRCSSCKKRV-GL--TGFKCR-CGNLYCVSHRYSDKHNCPFDYR 150 (172)
Q Consensus 109 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 150 (172)
.+..|..|++.| || .|++|+ |+..+=......=...|..++.
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHT 72 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCCC
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcchh
Confidence 567899999987 44 489998 8877533333334457877766
No 50
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=46.83 E-value=11 Score=24.68 Aligned_cols=24 Identities=33% Similarity=1.007 Sum_probs=18.7
Q ss_pred CCCCcccccccc-cc--cceeee-cCCc
Q 030726 109 GPSRCSSCKKRV-GL--TGFKCR-CGNL 132 (172)
Q Consensus 109 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 132 (172)
.+..|..|++.| || .|++|+ |+.+
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVK 50 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCE
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCe
Confidence 467899999988 44 489998 7665
No 51
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.03 E-value=18 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.591 Sum_probs=18.1
Q ss_pred CCCcccccccccccceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
...|..|...+.- ...-.||++||.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~ 44 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCL 44 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEH
T ss_pred CCEeccCCcccCC-eEEcCCCChhhH
Confidence 4689999876543 334489999996
No 52
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=45.15 E-value=6.2 Score=27.01 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.8
Q ss_pred CCCcccccccccc
Q 030726 110 PSRCSSCKKRVGL 122 (172)
Q Consensus 110 ~~rC~~C~kkvgl 122 (172)
|-||++|+|-+|-
T Consensus 4 PVRCFTCGkvi~~ 16 (66)
T 4ayb_N 4 PIRCFTCGSLIAD 16 (66)
T ss_dssp CSBCTTTCCBCHH
T ss_pred CcccCCCcHhHHH
Confidence 6799999997764
No 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.16 E-value=15 Score=23.44 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCCCcccccccccccceeeecCCccccCC---CCCCCCCCcccchHHHHHHH
Q 030726 109 GPSRCSSCKKRVGLTGFKCRCGNLYCVSH---RYSDKHNCPFDYRTAARDAI 157 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~gf~CrCg~~FC~~H---Ry~e~H~C~fDyk~~~r~~l 157 (172)
....|.+|...+.. ...-.||++||..= .+.....|.+--+...++.|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 34679999876533 34457999998531 12334567765554444433
No 54
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=42.69 E-value=6.6 Score=24.80 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=16.2
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|....|.=+=|..||..|
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 66 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHD 66 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHH
Confidence 356677777665555555566666544
No 55
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=41.95 E-value=8.7 Score=25.97 Aligned_cols=26 Identities=42% Similarity=1.028 Sum_probs=19.8
Q ss_pred CCCCCcccccccc-cc--cceeee-cCCcc
Q 030726 108 EGPSRCSSCKKRV-GL--TGFKCR-CGNLY 133 (172)
Q Consensus 108 ~~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 133 (172)
..+..|..|++-| || .|++|+ |+...
T Consensus 32 ~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 61 (77)
T 2enn_A 32 PQPTFCSVCHEFVWGLNKQGYQCRQCNAAI 61 (77)
T ss_dssp SSCEECSSSCCEECCTTCCEEECSSSCCEE
T ss_pred CCCcCccccChhhccccccccCcCCCCCcC
Confidence 3567899999987 44 489998 87654
No 56
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.35 E-value=13 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCcccccccccccceeeecCCccccCCCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSHRY 139 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~HRy 139 (172)
-+|..|++.|....|.=+=|.+||..|-.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCGS 64 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHhh
Confidence 57788888887666777888889987643
No 57
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.92 E-value=8 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.1
Q ss_pred CCCCcccccccccccceeee-cCCc
Q 030726 109 GPSRCSSCKKRVGLTGFKCR-CGNL 132 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~gf~Cr-Cg~~ 132 (172)
.+..|..|+.+++.---.|| ||++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 45679999999888778998 9987
No 58
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.57 E-value=31 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.616 Sum_probs=18.3
Q ss_pred CCCcccccccccccceeeecCCccccC
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
...|..|...+.- ...-.||++||..
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 44 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQA 44 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTT
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHH
Confidence 4679999876543 3344799999963
No 59
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.13 E-value=18 Score=24.31 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=19.8
Q ss_pred CCCCccccccccccc---ceeee-cCCcc
Q 030726 109 GPSRCSSCKKRVGLT---GFKCR-CGNLY 133 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~F 133 (172)
-.-+|..|+..+.|. +.+|+ ||+-.
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 468999999999985 58997 76543
No 60
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.36 E-value=33 Score=21.29 Aligned_cols=26 Identities=27% Similarity=0.805 Sum_probs=17.0
Q ss_pred CCCCcccccccccc--------------cceeee-cCCccc
Q 030726 109 GPSRCSSCKKRVGL--------------TGFKCR-CGNLYC 134 (172)
Q Consensus 109 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC 134 (172)
.+-.|..|++.... ..|.|. ||..|-
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 46788888876542 147776 766664
No 61
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.01 E-value=14 Score=27.05 Aligned_cols=26 Identities=23% Similarity=0.724 Sum_probs=20.7
Q ss_pred Ccccccccccccceeee-cCCccccCCCCC
Q 030726 112 RCSSCKKRVGLTGFKCR-CGNLYCVSHRYS 140 (172)
Q Consensus 112 rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy~ 140 (172)
+|..|+|... |.|. |...||..|...
T Consensus 60 ~C~~C~k~~~---~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 60 QCDECSSAAV---SFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp BCTTTCSBCC---EECSSSSCEECTTTCTT
T ss_pred CCCcCCCCCC---cCcCCCCcchhhhccCC
Confidence 5778887643 8997 999999998753
No 62
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=37.73 E-value=12 Score=26.92 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=17.5
Q ss_pred ceeeecCCccccCCCCCCCC
Q 030726 124 GFKCRCGNLYCVSHRYSDKH 143 (172)
Q Consensus 124 gf~CrCg~~FC~~HRy~e~H 143 (172)
=|+|.|++..=+.+|||..|
T Consensus 48 FFkC~C~~Rt~sl~r~P~~~ 67 (92)
T 2kwq_A 48 FFKCPCGNRTISLDRLPKKH 67 (92)
T ss_dssp EEECTTSCEEEESSSSCCSC
T ss_pred EEECCCCCceeEeeeCCCCC
Confidence 49999999999999999864
No 63
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.74 E-value=9.2 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=17.4
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c 58 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPC 58 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHH
Confidence 467777777766556556666666543
No 64
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=36.38 E-value=10 Score=24.14 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=18.0
Q ss_pred CCCccccccccccc--------------ceeee-cCCcccc
Q 030726 110 PSRCSSCKKRVGLT--------------GFKCR-CGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--------------gf~Cr-Cg~~FC~ 135 (172)
+-.|..|+|..... .|.|. ||..|-.
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 56788888765431 58897 8888854
No 65
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.74 E-value=33 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=18.6
Q ss_pred CCCccccccccccc---ceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLT---GFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~---gf~CrCg~~FC~ 135 (172)
...|..|...+... ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~ 43 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICR 43 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEH
T ss_pred CCCCccCCccccccCCCeEECCCCChhhH
Confidence 45799998776542 344579999986
No 66
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=34.72 E-value=9.8 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=19.8
Q ss_pred CCCCcccccccccccceeee-cCCc
Q 030726 109 GPSRCSSCKKRVGLTGFKCR-CGNL 132 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~gf~Cr-Cg~~ 132 (172)
...-|..|+.++....-.|| ||+.
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 45679999999999999998 8743
No 67
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.64 E-value=32 Score=20.48 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=17.9
Q ss_pred CCCcccccccccccceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
...|..|...+.. ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 39 (58)
T 2ecj_A 15 EASCSVCLEYLKE-PVIIECGHNFCK 39 (58)
T ss_dssp CCBCSSSCCBCSS-CCCCSSCCCCCH
T ss_pred CCCCccCCcccCc-cEeCCCCCccCH
Confidence 4579999876543 344579999985
No 68
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=33.99 E-value=11 Score=25.11 Aligned_cols=26 Identities=31% Similarity=0.829 Sum_probs=19.9
Q ss_pred CCccccccc-ccccceee-ecCCccccC
Q 030726 111 SRCSSCKKR-VGLTGFKC-RCGNLYCVS 136 (172)
Q Consensus 111 ~rC~~C~kk-vgl~gf~C-rCg~~FC~~ 136 (172)
..|.+|+.- ....-|+| ||+..||++
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl 39 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSL 39 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccCh
Confidence 479999852 23456999 699999996
No 69
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.24 E-value=11 Score=25.31 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=5.1
Q ss_pred CCcccccccc
Q 030726 111 SRCSSCKKRV 120 (172)
Q Consensus 111 ~rC~~C~kkv 120 (172)
.+|..|++.|
T Consensus 26 ~~C~~C~~~I 35 (89)
T 1x64_A 26 PLCDKCGSGI 35 (89)
T ss_dssp CBCTTTCCBC
T ss_pred CCcccCCCEe
Confidence 3455555544
No 70
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.98 E-value=16 Score=19.12 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=6.2
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elq_A 9 PFKCSLCEYATR 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 46665 665553
No 71
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=32.86 E-value=26 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.604 Sum_probs=21.2
Q ss_pred CCCcccccccccccceeee---cCCccccCCCCCCCC
Q 030726 110 PSRCSSCKKRVGLTGFKCR---CGNLYCVSHRYSDKH 143 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~Cr---Cg~~FC~~HRy~e~H 143 (172)
..+|..|.+. +-.-+.|- ||+++|+. |...|
T Consensus 25 ~~~C~~C~~~-~~~lw~CL~~~Cg~vgCgr--~~~~H 58 (97)
T 2uzg_A 25 LGTCQDCKVQ-GPNLWACLENRCSYVGCGE--SQVDH 58 (97)
T ss_dssp TTCCSSSCCC-CSSCEEECCTTCCCEECCT--TTTCH
T ss_pred CCcCcCcCCC-CCCceeeecccCCCcccCC--CcChH
Confidence 4689999843 22227886 99999996 54433
No 72
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.70 E-value=12 Score=23.46 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=17.0
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 58 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETH 58 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHH
Confidence 466777777765556656666666543
No 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.59 E-value=13 Score=23.71 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=13.1
Q ss_pred CCcccccccccccceeeecCCccccC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
-+|..|++.|....|.=+=|..||..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~ 59 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEG 59 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHH
Confidence 34556666654444444444455443
No 74
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.45 E-value=13 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDC 62 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhH
Confidence 467777877765556666677776544
No 75
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=31.42 E-value=21 Score=20.64 Aligned_cols=11 Identities=18% Similarity=0.739 Sum_probs=6.6
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 29 ~~~C~~C~~~f~ 40 (57)
T 1bbo_A 29 PYHCTYCNFSFK 40 (57)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhc
Confidence 47775 666553
No 76
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=31.26 E-value=36 Score=21.84 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=18.5
Q ss_pred CCCcccccccccccceeee-cCCccccC
Q 030726 110 PSRCSSCKKRVGLTGFKCR-CGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~Cr-Cg~~FC~~ 136 (172)
...|..|...+. ....-. ||++||..
T Consensus 15 ~~~C~IC~~~~~-~p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 15 ELLCLICKDIMT-DAVVIPCCGNSYCDE 41 (74)
T ss_dssp GGSCSSSCCCCT-TCEECSSSCCEECTT
T ss_pred CCCCcCCChHHh-CCeEcCCCCCHHHHH
Confidence 468999976543 245667 99999963
No 77
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.16 E-value=48 Score=21.06 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=17.8
Q ss_pred CCCcccccccccccceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
...|..|...+.- .....||++||.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 43 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCR 43 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCH
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHH
Confidence 4689999765432 345679999985
No 78
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=30.89 E-value=21 Score=20.69 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=6.6
Q ss_pred CCCcccccccc
Q 030726 110 PSRCSSCKKRV 120 (172)
Q Consensus 110 ~~rC~~C~kkv 120 (172)
+-.|..|++..
T Consensus 4 ~~~C~~C~~~f 14 (57)
T 3uk3_C 4 SRECSYCGKFF 14 (57)
T ss_dssp -CBCTTTCCBC
T ss_pred CccCCCCcchh
Confidence 45677777654
No 79
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.79 E-value=13 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=11.8
Q ss_pred CcccccccccccceeeecCCcccc
Q 030726 112 RCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 112 rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
+|..|++.|....|.=+=|..||.
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~ 64 (77)
T 1g47_A 41 VCAQCFQQFPEGLFYEFEGRKYCE 64 (77)
T ss_dssp CCTTTCCCCGGGCSEEETTEEECH
T ss_pred eECCCCCCCCCCCeEeECCeEeCH
Confidence 445555555544444444444543
No 80
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=30.73 E-value=43 Score=21.84 Aligned_cols=27 Identities=15% Similarity=0.468 Sum_probs=19.2
Q ss_pred CCCCcccccccccc--------------cceeee-cCCcccc
Q 030726 109 GPSRCSSCKKRVGL--------------TGFKCR-CGNLYCV 135 (172)
Q Consensus 109 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC~ 135 (172)
.+-.|..|++.... ..|.|. |+..|-.
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 45789999886642 148897 8888854
No 81
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.71 E-value=20 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=25.4
Q ss_pred CCCCccccccccccc---ceeee-cCCccccCCC
Q 030726 109 GPSRCSSCKKRVGLT---GFKCR-CGNLYCVSHR 138 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HR 138 (172)
....|..|.+.+|++ |..|. |...+|..=+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467999999999996 78898 9999998655
No 82
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=30.68 E-value=12 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.916 Sum_probs=10.7
Q ss_pred ccceeeecCCcccc
Q 030726 122 LTGFKCRCGNLYCV 135 (172)
Q Consensus 122 l~gf~CrCg~~FC~ 135 (172)
..-+.||||..|--
T Consensus 21 ~y~ypCrCGd~F~i 34 (83)
T 1yop_A 21 MFTYPCPCGDRFQI 34 (83)
T ss_dssp EEEEEETTTEEEEE
T ss_pred EEEEeCCCCCeEEE
Confidence 34689999998843
No 83
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.14 E-value=16 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.557 Sum_probs=16.7
Q ss_pred CCCCccccccccc-----------ccceeee-cCCccc
Q 030726 109 GPSRCSSCKKRVG-----------LTGFKCR-CGNLYC 134 (172)
Q Consensus 109 ~~~rC~~C~kkvg-----------l~gf~Cr-Cg~~FC 134 (172)
.+-.|..|+|... -..|.|. ||..|-
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 3467888887421 2258886 887774
No 84
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=30.06 E-value=23 Score=20.79 Aligned_cols=11 Identities=18% Similarity=0.878 Sum_probs=6.4
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 46675 666553
No 85
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=30.05 E-value=13 Score=28.91 Aligned_cols=30 Identities=27% Similarity=0.716 Sum_probs=20.6
Q ss_pred CCCccc--cccccccc--c-eeee-cCCcc-ccCCCC
Q 030726 110 PSRCSS--CKKRVGLT--G-FKCR-CGNLY-CVSHRY 139 (172)
Q Consensus 110 ~~rC~~--C~kkvgl~--g-f~Cr-Cg~~F-C~~HRy 139 (172)
-..|.. |+|||-.. | |.|- |+..+ =-.|||
T Consensus 43 Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry 79 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRM 79 (181)
T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEE
T ss_pred ECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEE
Confidence 457888 99999753 2 7894 87765 235665
No 86
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.05 E-value=29 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.674 Sum_probs=18.1
Q ss_pred CCCCcccccccccccc------eeeecCCcccc
Q 030726 109 GPSRCSSCKKRVGLTG------FKCRCGNLYCV 135 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~g------f~CrCg~~FC~ 135 (172)
....|.+|...+.... ..-.||++||.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~ 46 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 46 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcH
Confidence 3467999987654321 45579999984
No 87
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.03 E-value=26 Score=22.84 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=21.7
Q ss_pred CCcccccccccccceeeecCCccccCCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSHR 138 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~HR 138 (172)
-+|..|++.|.-..|.=+=|..||..|-
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CeecCCCCccCCCccEeeCCEEECHHHH
Confidence 5678888888766777777888887764
No 88
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=29.62 E-value=13 Score=26.57 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.9
Q ss_pred ccceeeecCCcc
Q 030726 122 LTGFKCRCGNLY 133 (172)
Q Consensus 122 l~gf~CrCg~~F 133 (172)
..-+.||||..|
T Consensus 21 ~y~ypCrCGd~F 32 (89)
T 2jr7_A 21 TYFYPCPCGDNF 32 (89)
T ss_dssp EEEEECTTSSEE
T ss_pred EEEEcCCCCCEE
Confidence 346899999988
No 89
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.43 E-value=15 Score=23.35 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=15.6
Q ss_pred CCcccccccccccceeeecCCccccC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
-+|..|++.|....|.=+=|..||..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~ 59 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVP 59 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHH
T ss_pred CcccccCCccCCCccCccCCeEECHH
Confidence 45667777666555555555666644
No 90
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.38 E-value=39 Score=21.88 Aligned_cols=25 Identities=24% Similarity=0.707 Sum_probs=17.8
Q ss_pred CCCcccccccccccceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
...|..|...+.- ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 39 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCE 39 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEH
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHH
Confidence 4679999776533 345579999985
No 91
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.33 E-value=29 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=18.4
Q ss_pred CCCCccccccccccc--------------ceeee-cCCcccc
Q 030726 109 GPSRCSSCKKRVGLT--------------GFKCR-CGNLYCV 135 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~--------------gf~Cr-Cg~~FC~ 135 (172)
..-.|..|+|..... .|.|. ||..|-.
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 345799998864431 58896 8887753
No 92
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=28.91 E-value=13 Score=26.16 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=25.7
Q ss_pred CCCCCccccccccccc-----ceeee-cCCccccCCCC---CCCCCCcccc
Q 030726 108 EGPSRCSSCKKRVGLT-----GFKCR-CGNLYCVSHRY---SDKHNCPFDY 149 (172)
Q Consensus 108 ~~~~rC~~C~kkvgl~-----gf~Cr-Cg~~FC~~HRy---~e~H~C~fDy 149 (172)
..+..|..|++.|=-+ ||+|+ |+.+.=..+.. .--..|..+|
T Consensus 33 ~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~~ 83 (84)
T 2row_A 33 HFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYY 83 (84)
T ss_dssp SSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTTT
T ss_pred CCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcCC
Confidence 3567899999877532 89998 76655333333 2334455444
No 93
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.91 E-value=15 Score=17.63 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=5.8
Q ss_pred eeee-cCCcccc
Q 030726 125 FKCR-CGNLYCV 135 (172)
Q Consensus 125 f~Cr-Cg~~FC~ 135 (172)
|.|. ||..|-.
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 4554 6655543
No 94
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=28.86 E-value=28 Score=22.56 Aligned_cols=30 Identities=27% Similarity=0.730 Sum_probs=22.1
Q ss_pred cccceeeecCCccccCCCCCCCCCCcccch
Q 030726 121 GLTGFKCRCGNLYCVSHRYSDKHNCPFDYR 150 (172)
Q Consensus 121 gl~gf~CrCg~~FC~~HRy~e~H~C~fDyk 150 (172)
|-.||.|.||...|-.-.--....|+-|-|
T Consensus 13 gevgytcdcgekiclygqscndgqcsgdpk 42 (57)
T 1e0f_I 13 GEVGYTCDCGEKICLYGQSCNDGQCSGDPK 42 (57)
T ss_dssp SSCSSCEECSSSEECTTCCBSSSCBCSCCC
T ss_pred CceeeeccCCceeeEecccccCCcccCCCC
Confidence 445889999998887766666677776654
No 95
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.38 E-value=27 Score=26.35 Aligned_cols=30 Identities=27% Similarity=0.757 Sum_probs=24.4
Q ss_pred CCCCccccccccccc---ceeee-cCCccccCCC
Q 030726 109 GPSRCSSCKKRVGLT---GFKCR-CGNLYCVSHR 138 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HR 138 (172)
....|..|.+.+|++ |..|. |...+|..=+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 457899999999975 67897 9999997543
No 96
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.35 E-value=10 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=10.1
Q ss_pred CcccccccccccceeeecCCccc
Q 030726 112 RCSSCKKRVGLTGFKCRCGNLYC 134 (172)
Q Consensus 112 rC~~C~kkvgl~gf~CrCg~~FC 134 (172)
+|..|++.|....|.=+=|..||
T Consensus 43 ~C~~C~~~L~~~~~~~~~g~~yC 65 (79)
T 1x62_A 43 VCTDCGTNLKQKGHFFVEDQIYC 65 (79)
T ss_dssp SCSSSCCCHHHHCCEESSSCEEC
T ss_pred eeCCCCCCCCCCCeEeECCEEEC
Confidence 34455555443334444444444
No 97
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.23 E-value=16 Score=17.72 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=6.1
Q ss_pred eeee-cCCccc
Q 030726 125 FKCR-CGNLYC 134 (172)
Q Consensus 125 f~Cr-Cg~~FC 134 (172)
|.|. ||..|-
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 5665 666664
No 98
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=27.86 E-value=19 Score=24.24 Aligned_cols=25 Identities=28% Similarity=0.797 Sum_probs=18.2
Q ss_pred CCccccccccccc---ceeeecCCcccc
Q 030726 111 SRCSSCKKRVGLT---GFKCRCGNLYCV 135 (172)
Q Consensus 111 ~rC~~C~kkvgl~---gf~CrCg~~FC~ 135 (172)
..|..|--.+.+. -+-|.||+.||.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~ 39 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICR 39 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCH
T ss_pred CcCCccCccCccccccccccCCCCCcCH
Confidence 4688888876543 355889999994
No 99
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.84 E-value=17 Score=17.66 Aligned_cols=12 Identities=25% Similarity=1.071 Sum_probs=7.1
Q ss_pred ceeee-cCCcccc
Q 030726 124 GFKCR-CGNLYCV 135 (172)
Q Consensus 124 gf~Cr-Cg~~FC~ 135 (172)
.|.|. ||..|-.
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 36665 6666643
No 100
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.62 E-value=17 Score=17.66 Aligned_cols=10 Identities=30% Similarity=0.756 Sum_probs=5.8
Q ss_pred eeee-cCCccc
Q 030726 125 FKCR-CGNLYC 134 (172)
Q Consensus 125 f~Cr-Cg~~FC 134 (172)
|.|. ||..|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 5665 666553
No 101
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.45 E-value=19 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=10.1
Q ss_pred CCCCccccccccc
Q 030726 109 GPSRCSSCKKRVG 121 (172)
Q Consensus 109 ~~~rC~~C~kkvg 121 (172)
.+-.|..|+|...
T Consensus 23 ~~~~C~~C~k~f~ 35 (98)
T 2gqj_A 23 GEAVCPTCNVVTR 35 (98)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CCcCCCCCCCChh
Confidence 4578999988776
No 102
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.44 E-value=13 Score=17.97 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=7.5
Q ss_pred eeee-cCCccccC
Q 030726 125 FKCR-CGNLYCVS 136 (172)
Q Consensus 125 f~Cr-Cg~~FC~~ 136 (172)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5665 77777543
No 103
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.30 E-value=19 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.717 Sum_probs=19.0
Q ss_pred CCCCccccccccc-c--cceeee-cCCcc
Q 030726 109 GPSRCSSCKKRVG-L--TGFKCR-CGNLY 133 (172)
Q Consensus 109 ~~~rC~~C~kkvg-l--~gf~Cr-Cg~~F 133 (172)
.+..|..|++.|- | .|++|+ |+..+
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 55 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNI 55 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEE
T ss_pred CCcCchhcChhhccccCCccccCCCCCcc
Confidence 4678999999873 3 489998 87653
No 104
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.25 E-value=16 Score=17.77 Aligned_cols=10 Identities=30% Similarity=1.075 Sum_probs=5.5
Q ss_pred eeee-cCCccc
Q 030726 125 FKCR-CGNLYC 134 (172)
Q Consensus 125 f~Cr-Cg~~FC 134 (172)
|.|. ||..|-
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 5564 665553
No 105
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.23 E-value=27 Score=24.58 Aligned_cols=36 Identities=22% Similarity=0.572 Sum_probs=21.3
Q ss_pred CCCcccccccccccceee-ecCCccccCC--CCCCCCCCcc
Q 030726 110 PSRCSSCKKRVGLTGFKC-RCGNLYCVSH--RYSDKHNCPF 147 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~C-rCg~~FC~~H--Ry~e~H~C~f 147 (172)
.-.|..|..-+.- ...- .||++||..- ++-. ..|+.
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~-~~CP~ 60 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG-TGCPV 60 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT-TBCSS
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc-CCCcC
Confidence 4578999754432 3444 7999998632 2322 45654
No 106
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.15 E-value=28 Score=21.21 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=7.9
Q ss_pred CCCCcccccccc
Q 030726 109 GPSRCSSCKKRV 120 (172)
Q Consensus 109 ~~~rC~~C~kkv 120 (172)
.+-.|..|++..
T Consensus 8 ~~~~C~~C~k~f 19 (70)
T 1x5w_A 8 HPEKCSECSYSC 19 (70)
T ss_dssp CSEECSSSSCEE
T ss_pred CCeECCCCCccc
Confidence 356788887754
No 107
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=17 Score=23.05 Aligned_cols=27 Identities=33% Similarity=0.669 Sum_probs=16.6
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPC 60 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHH
Confidence 456677777666556555566666443
No 108
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.66 E-value=18 Score=17.51 Aligned_cols=10 Identities=50% Similarity=1.441 Sum_probs=5.9
Q ss_pred eeee-cCCccc
Q 030726 125 FKCR-CGNLYC 134 (172)
Q Consensus 125 f~Cr-Cg~~FC 134 (172)
|.|. ||..|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 5665 666654
No 109
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.61 E-value=25 Score=22.67 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=15.9
Q ss_pred CCcccccccccccceeeecCCcccc
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
-+|..|++.|....|.=+=|..||.
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~ 61 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCH 61 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECT
T ss_pred CCCCCCCCccCCCceEeECCEEecc
Confidence 4566777777655565565666665
No 110
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=26.43 E-value=16 Score=25.70 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.8
Q ss_pred ccceeeecCCcc
Q 030726 122 LTGFKCRCGNLY 133 (172)
Q Consensus 122 l~gf~CrCg~~F 133 (172)
..-+.||||..|
T Consensus 28 ~y~y~CrCGd~F 39 (83)
T 1wge_A 28 TYFYPCPCGDNF 39 (83)
T ss_dssp EEEECCSSSSCE
T ss_pred EEEEeCCCCCEE
Confidence 346899999988
No 111
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.33 E-value=18 Score=24.24 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=7.1
Q ss_pred CCCcccccccc
Q 030726 110 PSRCSSCKKRV 120 (172)
Q Consensus 110 ~~rC~~C~kkv 120 (172)
..+|..|++.|
T Consensus 25 ~~~C~~C~~~I 35 (90)
T 2dar_A 25 TPMCAHCNQVI 35 (90)
T ss_dssp CCBBSSSCCBC
T ss_pred CCCCccCCCEe
Confidence 45677777655
No 112
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.24 E-value=24 Score=21.72 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=8.3
Q ss_pred CCCCcccccccc
Q 030726 109 GPSRCSSCKKRV 120 (172)
Q Consensus 109 ~~~rC~~C~kkv 120 (172)
.+-.|..|.+..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 356788887764
No 113
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.95 E-value=17 Score=23.83 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=12.2
Q ss_pred CcccccccccccceeeecCCccccC
Q 030726 112 RCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 112 rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
+|..|++.|....|.=+=|..||..
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~ 60 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKS 60 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSH
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHH
Confidence 4555555554444444444445433
No 114
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.74 E-value=17 Score=17.84 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=6.3
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 36665 666663
No 115
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.70 E-value=23 Score=18.57 Aligned_cols=10 Identities=20% Similarity=1.022 Sum_probs=5.5
Q ss_pred ceeee-cCCcc
Q 030726 124 GFKCR-CGNLY 133 (172)
Q Consensus 124 gf~Cr-Cg~~F 133 (172)
.|.|. ||..|
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elo_A 9 SYSCPVCEKSF 19 (37)
T ss_dssp CCEETTTTEEC
T ss_pred CcCCCCCCCcc
Confidence 45664 55555
No 116
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.63 E-value=19 Score=22.76 Aligned_cols=26 Identities=27% Similarity=0.666 Sum_probs=14.1
Q ss_pred CCcccccccccccceeeecCCccccC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
-+|..|++.|....|.=+=|..||..
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~ 57 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLN 57 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHH
Confidence 45667777665444544444555543
No 117
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.58 E-value=23 Score=18.12 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=5.9
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 45664 555553
No 118
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.51 E-value=19 Score=23.50 Aligned_cols=27 Identities=33% Similarity=0.754 Sum_probs=18.1
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|....|.=+=|..||..|
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~c 70 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTC 70 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHH
Confidence 467788887776666666666776543
No 119
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.22 E-value=18 Score=17.59 Aligned_cols=10 Identities=20% Similarity=0.786 Sum_probs=5.2
Q ss_pred eeee-cCCccc
Q 030726 125 FKCR-CGNLYC 134 (172)
Q Consensus 125 f~Cr-Cg~~FC 134 (172)
|.|. ||..|-
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 4554 555553
No 120
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.08 E-value=47 Score=21.04 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=17.6
Q ss_pred CCCcccccccccccceee-ecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKC-RCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~C-rCg~~FC~ 135 (172)
...|..|...+.- ...- .||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~ 40 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCK 40 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECH
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHH
Confidence 4679999765433 3444 79999986
No 121
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.98 E-value=25 Score=18.40 Aligned_cols=9 Identities=33% Similarity=1.257 Sum_probs=4.0
Q ss_pred eeee-cCCcc
Q 030726 125 FKCR-CGNLY 133 (172)
Q Consensus 125 f~Cr-Cg~~F 133 (172)
|.|. ||..|
T Consensus 12 ~~C~~C~k~f 21 (37)
T 1p7a_A 12 FQCPDCDRSF 21 (37)
T ss_dssp BCCTTTCCCB
T ss_pred ccCCCCCccc
Confidence 4443 44444
No 122
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.79 E-value=19 Score=17.32 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=6.6
Q ss_pred eeee-cCCcccc
Q 030726 125 FKCR-CGNLYCV 135 (172)
Q Consensus 125 f~Cr-Cg~~FC~ 135 (172)
|.|. ||..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 5565 6666653
No 123
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.45 E-value=25 Score=23.80 Aligned_cols=11 Identities=18% Similarity=0.604 Sum_probs=7.6
Q ss_pred CCCcccccccc
Q 030726 110 PSRCSSCKKRV 120 (172)
Q Consensus 110 ~~rC~~C~kkv 120 (172)
+-.|..|+|..
T Consensus 34 ~~~C~~C~k~F 44 (96)
T 2ctd_A 34 SVSCPTCQAVG 44 (96)
T ss_dssp CEECTTTCSCE
T ss_pred CcCCCCCCCCc
Confidence 45677777766
No 124
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.45 E-value=25 Score=18.13 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=5.9
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 45664 555553
No 125
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.42 E-value=19 Score=17.71 Aligned_cols=11 Identities=18% Similarity=0.872 Sum_probs=6.4
Q ss_pred eeee-cCCcccc
Q 030726 125 FKCR-CGNLYCV 135 (172)
Q Consensus 125 f~Cr-Cg~~FC~ 135 (172)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 5564 6666643
No 126
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.20 E-value=34 Score=23.81 Aligned_cols=31 Identities=29% Similarity=0.768 Sum_probs=25.2
Q ss_pred CCCCccccccccccc---ceeee-cCCccccCCCC
Q 030726 109 GPSRCSSCKKRVGLT---GFKCR-CGNLYCVSHRY 139 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HRy 139 (172)
..++|..|...+|++ |..|+ |-+.-|..-|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 468999999999996 78998 97777776553
No 127
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.64 E-value=18 Score=24.31 Aligned_cols=23 Identities=35% Similarity=0.964 Sum_probs=9.9
Q ss_pred CcccccccccccceeeecCCccc
Q 030726 112 RCSSCKKRVGLTGFKCRCGNLYC 134 (172)
Q Consensus 112 rC~~C~kkvgl~gf~CrCg~~FC 134 (172)
+|..|++.|....|.=+=|..||
T Consensus 44 ~C~~C~~~L~~~~~~~~~g~~yC 66 (91)
T 2d8y_A 44 RCSYCNNKLSLGTYASLHGRIYC 66 (91)
T ss_dssp BCTTTCCBCCTTTCCCSSSCCCC
T ss_pred eeCCCCCCCCCCCcEeECCEEEC
Confidence 34455554444333333334444
No 128
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.63 E-value=16 Score=28.72 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=18.7
Q ss_pred CCcccccccccc--c-ceeee-cCCccccCCCC
Q 030726 111 SRCSSCKKRVGL--T-GFKCR-CGNLYCVSHRY 139 (172)
Q Consensus 111 ~rC~~C~kkvgl--~-gf~Cr-Cg~~FC~~HRy 139 (172)
.-|..|+|||-. . .|.|- |+..==..|||
T Consensus 43 ~ACp~CnKKV~~~~~g~~~CekC~~~~~~~~RY 75 (172)
T 3u50_C 43 YRCTCQGKSVLKYHGDSFFCESCQQFINPQVHL 75 (172)
T ss_dssp EECTTSCCCEEEETTTEEEETTTTEECCCEEEE
T ss_pred hhchhhCCEeeeCCCCeEECCCCCCCCCceEEE
Confidence 357789999962 2 38884 77662234666
No 129
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=23.60 E-value=28 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=16.8
Q ss_pred CCcccccccccccceeeecCCcccc
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
-.|..|...+.- ...-.||++||.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~ 39 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCK 39 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhH
Confidence 579999865432 333479999995
No 130
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.55 E-value=22 Score=24.20 Aligned_cols=23 Identities=26% Similarity=0.904 Sum_probs=17.9
Q ss_pred CCCCccccccccccc---ceeee-cCC
Q 030726 109 GPSRCSSCKKRVGLT---GFKCR-CGN 131 (172)
Q Consensus 109 ~~~rC~~C~kkvgl~---gf~Cr-Cg~ 131 (172)
-.-.|..|+..+.+. ...|+ ||+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCc
Confidence 457899999997774 47887 876
No 131
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.50 E-value=70 Score=20.33 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=17.8
Q ss_pred CCCccccccccccc--ceeeecCCccccC
Q 030726 110 PSRCSSCKKRVGLT--GFKCRCGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~CrCg~~FC~~ 136 (172)
...|.+|...+... ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~ 43 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDS 43 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETT
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHH
Confidence 46799997765432 1333599999864
No 132
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=23.47 E-value=30 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=18.3
Q ss_pred CCCcccccccc------------cccceeee-cCCccccC
Q 030726 110 PSRCSSCKKRV------------GLTGFKCR-CGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkv------------gl~gf~Cr-Cg~~FC~~ 136 (172)
..+|..|.+-- ...-..|- ||++.|+.
T Consensus 28 ~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr 67 (126)
T 2i50_A 28 WNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGR 67 (126)
T ss_dssp SSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECT
T ss_pred CCcCccccccccccccccccccccccceeeeeCCccccCC
Confidence 35788888631 11237785 99999985
No 133
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.40 E-value=43 Score=20.79 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=17.9
Q ss_pred CCCcccccccccccceeeecCCccccC
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
...|..|...+.. ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 40 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-PKQTECGHRFCES 40 (66)
T ss_dssp CEECTTTCCEESS-CCCCSSSCCCCHH
T ss_pred CCCCCCCChHhcC-eeECCCCCHHHHH
Confidence 4679999765432 3445899999963
No 134
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.20 E-value=23 Score=17.16 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=6.4
Q ss_pred eeee-cCCcccc
Q 030726 125 FKCR-CGNLYCV 135 (172)
Q Consensus 125 f~Cr-Cg~~FC~ 135 (172)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 5665 6666643
No 135
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=22.92 E-value=61 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCCcccccccccccceeee-cCCccccCCCC
Q 030726 110 PSRCSSCKKRVGLTGFKCR-CGNLYCVSHRY 139 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy 139 (172)
..+|..|.....| +.|- ||++.|++-.|
T Consensus 34 ~~~C~~C~~~~~L--wlCL~CG~vgCgr~~~ 62 (129)
T 2g45_A 34 GWKCSKCDMRENL--WLNLTDGSILCGRRYF 62 (129)
T ss_dssp BCCCSSSSCCSSE--EEETTTCCEEECCBCT
T ss_pred CCcCccccCcCce--EEeccCCccccCcccc
Confidence 4589999877544 7885 99999996655
No 136
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.57 E-value=18 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=7.6
Q ss_pred eeee-cCCccccC
Q 030726 125 FKCR-CGNLYCVS 136 (172)
Q Consensus 125 f~Cr-Cg~~FC~~ 136 (172)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6675 77777543
No 137
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.70 E-value=23 Score=24.47 Aligned_cols=30 Identities=17% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCCCCCcccccc-ccccc--c-eeee-cCCccccC
Q 030726 107 KEGPSRCSSCKK-RVGLT--G-FKCR-CGNLYCVS 136 (172)
Q Consensus 107 ~~~~~rC~~C~k-kvgl~--g-f~Cr-Cg~~FC~~ 136 (172)
+..+-.|..|+| +|.-. | -.|+ |+.+|=+-
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 455788999997 33222 3 8898 99998764
No 138
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=22.62 E-value=27 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=21.7
Q ss_pred CCCCCcccccc----cccccceeee-cCCccccCC
Q 030726 108 EGPSRCSSCKK----RVGLTGFKCR-CGNLYCVSH 137 (172)
Q Consensus 108 ~~~~rC~~C~k----kvgl~gf~Cr-Cg~~FC~~H 137 (172)
..+..|..|++ ++..--.+|+ ||.+|-+-=
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 45678999998 2222238998 999998763
No 139
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=22.46 E-value=48 Score=24.04 Aligned_cols=27 Identities=30% Similarity=0.610 Sum_probs=19.5
Q ss_pred CCCcccccccccc--cceeee-cCCccccC
Q 030726 110 PSRCSSCKKRVGL--TGFKCR-CGNLYCVS 136 (172)
Q Consensus 110 ~~rC~~C~kkvgl--~gf~Cr-Cg~~FC~~ 136 (172)
..+|..|...-+. -=+.|- ||++-|+.
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r 47 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCD 47 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccC
Confidence 5789999887422 125785 99999973
No 140
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.46 E-value=33 Score=17.66 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=5.0
Q ss_pred ceeee-cCCcc
Q 030726 124 GFKCR-CGNLY 133 (172)
Q Consensus 124 gf~Cr-Cg~~F 133 (172)
.|.|. ||..|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elt_A 9 PYKCPQCSYAS 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CCCCCCCCccc
Confidence 35554 55544
No 141
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.25 E-value=33 Score=17.91 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=6.5
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 46665 666664
No 142
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.84 E-value=73 Score=19.78 Aligned_cols=24 Identities=17% Similarity=0.524 Sum_probs=17.9
Q ss_pred CCCcccccccccccceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
...|..|...+.. ..-.||++||.
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~ 38 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQ 38 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECH
T ss_pred CCCCeeCCcCccC--cccCCCCcccH
Confidence 4679999876554 55569999985
No 143
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.18 E-value=24 Score=22.71 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=15.8
Q ss_pred CCcccccccccccceeeecCCccccC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVS 136 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 136 (172)
-+|..|++.|.-..|.=+=|..||..
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~ 72 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPD 72 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChH
Confidence 45667777766545555556666654
No 144
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.08 E-value=32 Score=17.87 Aligned_cols=11 Identities=18% Similarity=0.742 Sum_probs=6.0
Q ss_pred ceeee-cCCccc
Q 030726 124 GFKCR-CGNLYC 134 (172)
Q Consensus 124 gf~Cr-Cg~~FC 134 (172)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 45665 655553
No 145
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=35 Score=18.08 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=7.3
Q ss_pred ceeee-cCCcccc
Q 030726 124 GFKCR-CGNLYCV 135 (172)
Q Consensus 124 gf~Cr-Cg~~FC~ 135 (172)
.|+|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 46775 6666643
No 146
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.72 E-value=35 Score=21.95 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=5.7
Q ss_pred Ccccccccccc
Q 030726 112 RCSSCKKRVGL 122 (172)
Q Consensus 112 rC~~C~kkvgl 122 (172)
+|..|++.+..
T Consensus 5 ~C~rCg~~fs~ 15 (48)
T 4ayb_P 5 RCGKCWKTFTD 15 (48)
T ss_dssp CCCCTTTTCCC
T ss_pred EeeccCCCccH
Confidence 45555555443
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.52 E-value=39 Score=21.70 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=18.5
Q ss_pred CCcccccccccccceeeecCCcccc
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCV 135 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~ 135 (172)
-+|..|++.|....|.=+=|..||.
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~ 52 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCN 52 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEET
T ss_pred CCccccCccCCCCceECcCCeEeeC
Confidence 4677888887776666677777776
No 148
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.50 E-value=82 Score=19.77 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=17.5
Q ss_pred CCCccccccccccc--ceeeecCCcccc
Q 030726 110 PSRCSSCKKRVGLT--GFKCRCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~--gf~CrCg~~FC~ 135 (172)
...|..|...+... -....||++||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~ 42 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHR 42 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEH
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecH
Confidence 45799998775432 234469999984
No 149
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.46 E-value=27 Score=22.57 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=16.7
Q ss_pred CCcccccccccccceeeecCCccccCC
Q 030726 111 SRCSSCKKRVGLTGFKCRCGNLYCVSH 137 (172)
Q Consensus 111 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 137 (172)
-+|..|++.|....|.=+=|..||..|
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~ 68 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELH 68 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHH
Confidence 467778877765555555556666544
No 150
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.45 E-value=34 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=14.3
Q ss_pred ceeee-cCCccccCCCCC
Q 030726 124 GFKCR-CGNLYCVSHRYS 140 (172)
Q Consensus 124 gf~Cr-Cg~~FC~~HRy~ 140 (172)
...|. ||..||..++.+
T Consensus 43 ~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CEECTTTCCEECSSSCSB
T ss_pred ceEeCCCCCccccccCCc
Confidence 47895 999999999874
No 151
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=20.20 E-value=33 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCCcccccccccccceee-ecCCcccc
Q 030726 110 PSRCSSCKKRVGLTGFKC-RCGNLYCV 135 (172)
Q Consensus 110 ~~rC~~C~kkvgl~gf~C-rCg~~FC~ 135 (172)
...|..|...+.- .... .||++||.
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~CgH~fC~ 79 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKECLHRFCA 79 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETTTCCEEEH
T ss_pred CCCCcccChHhhC-cCEeCCCCChhHH
Confidence 3589999765443 4555 89999996
Done!