Query 030727
Match_columns 172
No_of_seqs 119 out of 907
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 3.9E-58 1.3E-62 353.6 11.8 158 1-160 4-167 (171)
2 3ulx_A Stress-induced transcri 100.0 7.3E-58 2.5E-62 352.5 13.3 150 9-160 10-170 (174)
3 1cmb_A Met APO-repressor; DNA- 56.2 17 0.00056 24.3 4.1 37 22-62 51-87 (104)
4 1ldd_A APC2WHB, anaphase promo 33.8 21 0.00072 22.8 1.9 27 14-41 36-63 (74)
5 4dox_A Coat protein; all helix 24.5 32 0.0011 26.7 1.8 25 12-36 153-177 (226)
6 3dct_B Nuclear receptor coacti 22.1 42 0.0014 15.9 1.2 13 22-35 3-15 (21)
7 3nr5_A MAF1, repressor of RNA 20.5 26 0.00089 25.9 0.5 13 46-58 119-131 (164)
8 2ehh_A DHDPS, dihydrodipicolin 17.0 51 0.0017 26.1 1.5 20 12-32 100-119 (294)
9 3dz1_A Dihydrodipicolinate syn 17.0 52 0.0018 26.3 1.6 20 11-32 106-125 (313)
10 1f6k_A N-acetylneuraminate lya 16.9 51 0.0018 26.0 1.5 20 12-32 104-123 (293)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.9e-58 Score=353.59 Aligned_cols=158 Identities=51% Similarity=0.869 Sum_probs=132.7
Q ss_pred CCcccccCCCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeccCCCCCCCCCCCcCC---CcceEEeecccccC
Q 030727 1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY 77 (172)
Q Consensus 1 m~~~~~~~~~~~~lp~G~rF~PTDeELi~~yL~~k~~g~~lp~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~~~ 77 (172)
|+..+.....++.|||||||+|||||||.+||++|+.|.++|..+|+++|||.+|||+||+.. +.+||||+++.+++
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 777776667789999999999999999999999999999999999999999999999999764 57999999999999
Q ss_pred CCCCCCcccCCcceeeeeCCCceEEeCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCC---CCCCCeeEEE
Q 030727 78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA---PQKKNLPSCG 154 (172)
Q Consensus 78 ~~g~r~~R~~~~G~Wk~~g~~k~i~~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~l~~~~~~---~~~~~~VLCk 154 (172)
++|.|.+|++++|+||++|++++|.+ ++.+||+|++|+||.++.+++.+|+|+||||+|.+.... ...++|||||
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCr 161 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCR 161 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEE
T ss_pred CCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEE
Confidence 99999999999999999999999985 568999999999999999999999999999999987532 3468999999
Q ss_pred EEEcCC
Q 030727 155 NGQLGS 160 (172)
Q Consensus 155 v~~~~~ 160 (172)
||+|..
T Consensus 162 v~~k~~ 167 (171)
T 1ut7_A 162 IYKKQS 167 (171)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 999876
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.3e-58 Score=352.46 Aligned_cols=150 Identities=55% Similarity=0.975 Sum_probs=132.0
Q ss_pred CCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeccCCCCCCCCCCCcCC---CcceEEeecccccCCCCCCCcc
Q 030727 9 NGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNR 85 (172)
Q Consensus 9 ~~~~~lp~G~rF~PTDeELi~~yL~~k~~g~~lp~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~~~~~g~r~~R 85 (172)
.+++.|||||||+|||||||.+||++|+.|.++|..+|+++|||++|||+||+.. +.+||||+++.+++++|.|.+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 4568999999999999999999999999999999999999999999999999864 4789999999999999999999
Q ss_pred cCCcceeeeeCCCceEEeCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCC--------CCCCCeeEEEEEE
Q 030727 86 ATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA--------PQKKNLPSCGNGQ 157 (172)
Q Consensus 86 ~~~~G~Wk~~g~~k~i~~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~l~~~~~~--------~~~~~~VLCkv~~ 157 (172)
++++|+||++|++++|.+ +|.+||+|++|+||.++.+++.+|+|+||||+|.+.... ...++|||||||+
T Consensus 90 ~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp EETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred ecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999975 478999999999999999999999999999999986432 1357999999999
Q ss_pred cCC
Q 030727 158 LGS 160 (172)
Q Consensus 158 ~~~ 160 (172)
|.+
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=56.20 E-value=17 Score=24.29 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHhHhCCCCCCcceeccCCCCCCCCCCCcC
Q 030727 22 PTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGD 62 (172)
Q Consensus 22 PTDeELi~~yL~~k~~g~~lp~~~I~~~Dvy~~~P~~Lp~~ 62 (172)
-|..||+..-...-..|+|||. +.|+-...|.++|..
T Consensus 51 ATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 51 ATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred cccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 4778888755555578999998 578888899999864
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=33.75 E-value=21 Score=22.82 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCCeEECC-ChHHHHHHHHHHhHhCCCC
Q 030727 14 LPPGFRFHP-TDEELVVQYLKRKIFACPL 41 (172)
Q Consensus 14 lp~G~rF~P-TDeELi~~yL~~k~~g~~l 41 (172)
.|.|+.|.. |++||- .||-.++...-|
T Consensus 36 ~~~~~~~~~it~~eL~-~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLE-GYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHH-HHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHH-HHHHHHHhCCeE
Confidence 367899999 999998 589999986644
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=24.53 E-value=32 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=17.3
Q ss_pred cCCCCCeEECCChHHHHHHHHHHhH
Q 030727 12 LRLPPGFRFHPTDEELVVQYLKRKI 36 (172)
Q Consensus 12 ~~lp~G~rF~PTDeELi~~yL~~k~ 36 (172)
+.-+-|..+.||++|+|.+=..+++
T Consensus 153 l~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 153 MQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4444489999999999987555544
No 6
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=22.13 E-value=42 Score=15.93 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=9.1
Q ss_pred CChHHHHHHHHHHh
Q 030727 22 PTDEELVVQYLKRK 35 (172)
Q Consensus 22 PTDeELi~~yL~~k 35 (172)
+.|.+|+. ||.-|
T Consensus 3 ~kdhqllr-ylldk 15 (21)
T 3dct_B 3 SKDHQLLR-YLLDK 15 (26)
T ss_pred hhHHHHHH-HHHcc
Confidence 67889985 66543
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=20.52 E-value=26 Score=25.90 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.5
Q ss_pred eeccCCCCCCCCC
Q 030727 46 IPEVDVCKSDPWD 58 (172)
Q Consensus 46 I~~~Dvy~~~P~~ 58 (172)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 4578999999983
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=16.96 E-value=51 Score=26.06 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=15.0
Q ss_pred cCCCCCeEECCChHHHHHHHH
Q 030727 12 LRLPPGFRFHPTDEELVVQYL 32 (172)
Q Consensus 12 ~~lp~G~rF~PTDeELi~~yL 32 (172)
+-+||- .|.||+++|+.||-
T Consensus 100 lv~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 100 LVVVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp EEECCC-SSCCCHHHHHHHHH
T ss_pred EECCCC-CCCCCHHHHHHHHH
Confidence 445664 48899999998764
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=16.96 E-value=52 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=14.5
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 030727 11 VLRLPPGFRFHPTDEELVVQYL 32 (172)
Q Consensus 11 ~~~lp~G~rF~PTDeELi~~yL 32 (172)
.+-+||- |.||+++|+.||-
T Consensus 106 vlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 106 VMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEECCCT--TCCSHHHHHHHHH
T ss_pred EEECCCC--CCCCHHHHHHHHH
Confidence 3456774 5699999997654
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=16.93 E-value=51 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=15.0
Q ss_pred cCCCCCeEECCChHHHHHHHH
Q 030727 12 LRLPPGFRFHPTDEELVVQYL 32 (172)
Q Consensus 12 ~~lp~G~rF~PTDeELi~~yL 32 (172)
+-+||-| |.||+++|+.||-
T Consensus 104 lv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 104 SAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EEECCCS-SCCCHHHHHHHHH
T ss_pred EECCCCC-CCCCHHHHHHHHH
Confidence 4456654 8899999998764
Done!