BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030728
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
 pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
           P85alpha And The Inhibitor Pik-108
          Length = 279

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 94  KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF-NEKNKEKVQLI 142
           +E+ + R  I++ N+ +K     CQ +ER  KE +E F  E N++++Q I
Sbjct: 154 QEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRI 203


>pdb|3O0Z|A Chain A, Crystal Structure Of A Coiled-Coil Domain From Human Rock
           I
 pdb|3O0Z|B Chain B, Crystal Structure Of A Coiled-Coil Domain From Human Rock
           I
 pdb|3O0Z|C Chain C, Crystal Structure Of A Coiled-Coil Domain From Human Rock
           I
 pdb|3O0Z|D Chain D, Crystal Structure Of A Coiled-Coil Domain From Human Rock
           I
          Length = 168

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 96  VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQL 141
           +  ++ +I S+ +E+K L H  +K E E KEA +  N   KEK  L
Sbjct: 92  IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDXLNHSEKEKNNL 137


>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
           With Nish2 Of P85alpha And The Drug Wortmannin
 pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
           With Nish2 Of P85alpha
          Length = 373

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 94  KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF-NEKNKEKVQLI 142
           +E+ + R  I++ N+ +K     CQ +ER  KE +E F  E N++++Q I
Sbjct: 154 QEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRI 203


>pdb|2V1Y|B Chain B, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
           Binding Domain (Abd) In A Complex With The Ish2 Domain
           From P85 Alpha
          Length = 170

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 94  KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF-NEKNKEKVQLI 142
           +E+   R  I++ N+ +K     CQ +ER  KE +E F  E N++++Q I
Sbjct: 45  QEIQXKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRI 94


>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
           Complex With Galactose
 pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
           Complex With Galactose
 pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
 pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
          Length = 595

 Score = 26.6 bits (57), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 124 YKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKS 166
           YKE++E       EKV L   L  L    E L  +K+EEL +S
Sbjct: 340 YKESMELDAIPLVEKVSLFETLDSLSSPVESLYPQKMEELGQS 382


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.125    0.314 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,979,357
Number of Sequences: 62578
Number of extensions: 98123
Number of successful extensions: 542
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 68
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)