BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030728
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1H222|GORAB_RAT RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
Length = 368
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 107 NKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKS 166
+ E + E EY A K + K QL L ++ ++E + +KLEEL +
Sbjct: 214 SLEYSYARKRFDRAEAEYVTAKLDLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQ 273
Query: 167 ID 168
+D
Sbjct: 274 LD 275
>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
Length = 394
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 179 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 238
Query: 107 NKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKS 166
+ + + E EY A K + K QL L ++ ++E + KKLEEL +
Sbjct: 239 SLDYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQ 298
Query: 167 ID 168
+D
Sbjct: 299 LD 300
>sp|A5PKK7|GORAB_BOVIN RAB6-interacting golgin OS=Bos taurus GN=GORAB PE=2 SV=2
Length = 370
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129
R + ET +L I++EL+AL D + ++ ++R +ID + + + E EY A
Sbjct: 174 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYVTAKL 233
Query: 130 AFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSID 168
K + K QL L ++ ++E + KKLEEL + +D
Sbjct: 234 ELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 272
>sp|Q8BRM2|GORAB_MOUSE RAB6-interacting golgin OS=Mus musculus GN=Gorab PE=1 SV=1
Length = 368
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + + + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSKKTQAETIKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 107 NKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKS 166
+ E + E EY A K + K QL L ++ ++E + KKLEEL +
Sbjct: 214 SLEYSYARKRFDRAEAEYITAKLDLQRKTETKEQLTEHLCTIIQQNELRKAKKLEELMQQ 273
Query: 167 ID 168
+D
Sbjct: 274 LD 275
>sp|Q2UUV3|COG6_ASPOR Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cog6 PE=3 SV=1
Length = 812
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G+V E+ KR+ T+ L D MRK +++ R+ V +E
Sbjct: 144 DVQKEVVDCNAEIVRDFGKVAEQLKRIGTVITSLNQTCDEMRKHISLARQDTAPVLEEAS 203
Query: 112 PLGHTCQKKEREYK-EALEAFN 132
L + QKKE E K + L+AF
Sbjct: 204 TLMN--QKKEAETKQQLLDAFT 223
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 2 SIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEE--EIEKKKLE 59
++E+ + +Q + ++Q+ ++ + + L+ + E + S T F A + E+E+ E
Sbjct: 1598 ALEEAEKAQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEE 1657
Query: 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDS-VNKELKPLGHTCQ 118
++ K + G E K + T+++ E + + E+ KK+++ + K+ + +
Sbjct: 1658 LKRKAAQNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDEKYKKVENLIAKKTEESADARR 1717
Query: 119 KKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSK 165
K E EA + N K+QL+ L ++++ K +EL++
Sbjct: 1718 KAEMLQNEAKTLLAQAN-SKLQLLKDLERKYEDNQRYLEDKAQELAR 1763
>sp|Q0UYL3|COG6_PHANO Conserved oligomeric Golgi complex subunit 6 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=COG6 PE=3 SV=1
Length = 694
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ +E ++ G+V E+ KR+ T L + MR +A K+ V +E
Sbjct: 77 DVQKEVIECNGEIVKDFGQVAEQLKRIGTAISSLNSYCADMRSHIAAANKETGPVLEEAT 136
Query: 112 PLGHTCQKKEREYK-EALEAFNEK---NKEKVQLITKLMELVGE 151
G Q+K+ E K + L+AFN + E+ ++T E V E
Sbjct: 137 --GLINQRKQVESKQQILQAFNSHFLISDEEATVLTSTAEPVNE 178
>sp|A2QLL1|COG6_ASPNC Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=cog6 PE=3 SV=1
Length = 716
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ T+ L D MRK + R++ V +E
Sbjct: 80 DVQKEVVDSNAEIVRDFGLVAEQLKRIGTVITNLNQTCDEMRKHIVSARQETTPVLEEAS 139
Query: 112 PLGHTCQKKEREYK-EALEAFNE 133
L Q+KE E K E LEAF +
Sbjct: 140 ALMK--QRKEAETKQELLEAFTQ 160
>sp|Q1E6R9|COG6_COCIM Conserved oligomeric Golgi complex subunit 6 OS=Coccidioides
immitis (strain RS) GN=COG6 PE=3 SV=2
Length = 732
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 36/195 (18%)
Query: 6 PQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALT----TFRAKEEEIEKKKLEVR 61
P+P+ N+L S+ S++ ++ E + + L T R +I+K+ ++
Sbjct: 24 PKPTALFNRLNAVLST---SYTDPDIRDSLETLDKRGLQNTAETRRTLRLDIQKEVIDSN 80
Query: 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKE 121
+ G+V E+ R+ L + + MR+ + R++ + V +E L QK+E
Sbjct: 81 GSIIQDFGKVAEQLSRIGAAISHLNTICEDMRQHITSARQETEPVLEEAAAL--LSQKQE 138
Query: 122 REYKE-ALEAFNEK---NKEKVQLITKLMELV-----------------------GESEK 154
E K+ L+AFN+ + + + ++T E V GE+++
Sbjct: 139 VETKQHLLDAFNKHFVLSSDDISILTSTAEPVDDRFFQILSRQKRIHKDCEVLLGGENQR 198
Query: 155 LRMKKLEELSKSIDS 169
L ++ +E+ SK+++S
Sbjct: 199 LGLEIMEQSSKNLNS 213
>sp|C8V7C6|COG6_EMENI Conserved oligomeric Golgi complex subunit 6 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cog6 PE=3 SV=1
Length = 739
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ ++ L+ D MRK + + ++ V +E
Sbjct: 81 DVQKEVVDCNAEIVRDFGNVAEQLKRIGSVISSLKETCDEMRKHIVLAKQDTTPVLEEAS 140
Query: 112 PLGHTCQKKEREYKE-ALEAFN 132
L QK+E E K+ L+AF
Sbjct: 141 AL--MIQKQEAETKQRLLDAFT 160
>sp|Q1PE49|4ON1_ARATH Protein At-4/1 OS=Arabidopsis thaliana GN=At4g26020 PE=1 SV=1
Length = 247
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 23 NLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIR 82
NL SS + +D ++ + + +R+K +E + EV E +L E K+L T
Sbjct: 10 NLLLSSFDQIYEDFKIGLNEINVYRSKSN-VESSRREVLEISNKNLKEENERLKKLYT-- 66
Query: 83 EELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQ 140
E L AD + R K S+ +ELK + + KE E++ ALE+ +K+ KV+
Sbjct: 67 ESLNNFADQLEH-----RTKCHSLKEELKRVNDENKSKEHEHRNALESLRQKHVTKVE 119
>sp|O64584|WAP_ARATH WPP domain-associated protein OS=Arabidopsis thaliana GN=WAP PE=1
SV=2
Length = 825
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129
R++EE RL + +E E L +A RKKI+ V++++ L +++E E ++ +E
Sbjct: 575 RLKEEIHRLGCLVKEKENLVQTAENNLATERKKIEVVSQQINDLQSQVERQETEIQDKIE 634
Query: 130 AFN 132
A +
Sbjct: 635 ALS 637
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 16 MLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEET 75
+L++ +LS S LSKD +S + E+ EK K ++++ + +EE
Sbjct: 727 LLKKDFESLSEKSEKLSKDIRSISFNI--------EDAEKYKTSYQDRINSSFSTIEETE 778
Query: 76 KRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110
K +A++++++EA + +++ ++ +IDS+NK+
Sbjct: 779 KHIASLKKDIEADENLLKQTIS----EIDSLNKQF 809
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2
Length = 1972
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%)
Query: 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100
S LTT A+EEE K +++ K ++ + +E K+ R+ELE L M E + +
Sbjct: 1009 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKMDGEASDLH 1068
Query: 101 KKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVG 150
++I + ++ L KKE E + AL ++ +K + K+ EL G
Sbjct: 1069 EQIADLQAQIAELKMQLAKKEEELQAALARLEDETSQKNNALKKIRELEG 1118
>sp|Q6CMB5|SP110_KLULA Spindle pole body component 110 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SPC110 PE=3 SV=1
Length = 858
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 16/120 (13%)
Query: 51 EEIEKKKLEVREKVQAHLGR--VEEETK---RLATIREELEALADPMRKEVAVVRKKIDS 105
EEI+K +R++V L +EE++K R++ ++ EL ++ D KE+A+ R+K ++
Sbjct: 532 EEIQK----LRKQVNPDLPTDVLEEKSKLQNRISLLQMELNSIKDTKEKELAMWRRKYET 587
Query: 106 VNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSK 165
+ + + L Q+ + + + NEK+KE +QL ++ L+ E L L ELSK
Sbjct: 588 IRRSNEEL---LQEGKDQSGQLSNILNEKDKEILQLQSRFNSLLTEKNSL----LNELSK 640
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.122 0.305
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,522,129
Number of Sequences: 539616
Number of extensions: 2216065
Number of successful extensions: 21369
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 1944
Number of HSP's that attempted gapping in prelim test: 16036
Number of HSP's gapped (non-prelim): 5979
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 57 (26.6 bits)