Query 030728
Match_columns 172
No_of_seqs 32 out of 34
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 03:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04949 Transcrip_act: Transc 100.0 5.9E-76 1.3E-80 472.2 17.6 154 16-169 5-159 (159)
2 TIGR01837 PHA_granule_1 poly(h 94.8 0.1 2.2E-06 39.6 5.9 62 51-114 55-116 (118)
3 PF05597 Phasin: Poly(hydroxya 94.2 0.21 4.5E-06 39.3 6.6 61 52-114 69-129 (132)
4 TIGR02169 SMC_prok_A chromosom 92.6 5 0.00011 37.6 13.9 72 95-166 952-1023(1164)
5 TIGR03185 DNA_S_dndD DNA sulfu 89.4 16 0.00034 34.1 13.9 36 135-170 478-514 (650)
6 PF10805 DUF2730: Protein of u 86.5 2.1 4.5E-05 31.9 5.3 53 62-116 35-87 (106)
7 PF07200 Mod_r: Modifier of ru 86.0 9 0.0002 28.8 8.6 62 93-155 54-115 (150)
8 PF08317 Spc7: Spc7 kinetochor 85.8 22 0.00048 30.6 12.0 88 59-149 177-264 (325)
9 PF10174 Cast: RIM-binding pro 82.5 50 0.0011 32.9 14.1 116 40-162 321-469 (775)
10 TIGR00606 rad50 rad50. This fa 81.4 49 0.0011 33.6 13.8 53 93-145 894-946 (1311)
11 PF10186 Atg14: UV radiation r 81.1 26 0.00056 27.9 15.0 51 63-117 57-107 (302)
12 cd07623 BAR_SNX1_2 The Bin/Amp 79.1 25 0.00054 28.7 9.2 70 62-131 149-219 (224)
13 TIGR00606 rad50 rad50. This fa 78.7 80 0.0017 32.1 14.7 104 43-150 859-965 (1311)
14 PRK03947 prefoldin subunit alp 76.9 23 0.00051 26.5 7.9 28 62-89 23-50 (140)
15 PF01920 Prefoldin_2: Prefoldi 75.4 24 0.00052 24.4 7.5 69 62-130 15-98 (106)
16 PF07888 CALCOCO1: Calcium bin 74.1 53 0.0011 31.7 11.2 35 122-156 223-257 (546)
17 PF12325 TMF_TATA_bd: TATA ele 74.0 40 0.00086 26.2 9.3 57 90-146 47-106 (120)
18 cd07627 BAR_Vps5p The Bin/Amph 73.0 48 0.001 26.8 9.4 39 61-99 142-180 (216)
19 PF01706 FliG_C: FliG C-termin 71.5 8.6 0.00019 28.0 4.3 46 60-110 56-101 (110)
20 PRK03918 chromosome segregatio 69.2 1E+02 0.0022 28.9 14.2 51 84-134 297-347 (880)
21 PF10241 KxDL: Uncharacterized 68.5 42 0.00091 24.3 7.5 60 40-110 21-80 (88)
22 KOG0996 Structural maintenance 68.4 87 0.0019 33.4 11.9 106 62-168 910-1029(1293)
23 PF09325 Vps5: Vps5 C terminal 68.1 53 0.0012 25.6 8.3 25 101-125 163-187 (236)
24 PRK03918 chromosome segregatio 67.4 1.1E+02 0.0024 28.7 14.1 78 64-145 174-254 (880)
25 PF05278 PEARLI-4: Arabidopsis 67.2 47 0.001 29.5 8.7 85 63-154 153-246 (269)
26 KOG0250 DNA repair protein RAD 67.1 1.5E+02 0.0033 31.2 13.2 55 55-109 295-352 (1074)
27 TIGR00763 lon ATP-dependent pr 66.7 24 0.00053 33.7 7.3 61 46-107 197-260 (775)
28 KOG0239 Kinesin (KAR3 subfamil 65.1 1.3E+02 0.0029 29.3 12.0 87 63-149 200-296 (670)
29 TIGR02168 SMC_prok_B chromosom 65.1 1.2E+02 0.0027 28.4 14.7 6 102-107 867-872 (1179)
30 KOG0979 Structural maintenance 65.1 70 0.0015 33.5 10.4 95 60-169 256-350 (1072)
31 PRK10787 DNA-binding ATP-depen 64.0 16 0.00035 35.5 5.7 62 45-107 198-262 (784)
32 cd07664 BAR_SNX2 The Bin/Amphi 60.3 91 0.002 26.3 8.9 68 43-110 132-208 (234)
33 TIGR02168 SMC_prok_B chromosom 58.5 1.6E+02 0.0035 27.6 13.8 49 122-170 993-1044(1179)
34 PRK02224 chromosome segregatio 56.6 1.8E+02 0.0039 27.6 14.5 34 91-124 650-683 (880)
35 PF11414 Suppressor_APC: Adeno 56.2 17 0.00037 26.9 3.5 55 60-114 29-83 (84)
36 PF10146 zf-C4H2: Zinc finger- 55.8 1.3E+02 0.0028 25.6 9.4 72 42-117 2-76 (230)
37 COG1340 Uncharacterized archae 54.8 1.6E+02 0.0035 26.5 9.9 59 90-148 30-88 (294)
38 cd07653 F-BAR_CIP4-like The F- 53.1 1.2E+02 0.0026 24.4 13.6 48 114-161 174-222 (251)
39 COG1196 Smc Chromosome segrega 52.9 2.6E+02 0.0056 28.3 13.5 60 98-157 946-1008(1163)
40 smart00766 DnaG_DnaB_bind DNA 52.4 42 0.00091 22.2 4.6 42 118-159 79-123 (125)
41 PRK01156 chromosome segregatio 52.2 2.2E+02 0.0048 27.3 13.3 43 67-113 620-662 (895)
42 smart00787 Spc7 Spc7 kinetocho 49.6 1.9E+02 0.004 25.6 12.4 90 64-156 177-266 (312)
43 cd07665 BAR_SNX1 The Bin/Amphi 49.0 1.6E+02 0.0036 25.0 8.7 38 62-99 159-196 (234)
44 PF03332 PMM: Eukaryotic phosp 48.9 21 0.00047 30.6 3.4 38 110-150 103-140 (220)
45 PF15035 Rootletin: Ciliary ro 47.0 1E+02 0.0022 25.2 7.0 64 67-134 65-135 (182)
46 PF10186 Atg14: UV radiation r 45.2 1.6E+02 0.0034 23.5 11.5 20 94-113 77-96 (302)
47 cd07625 BAR_Vps17p The Bin/Amp 44.2 79 0.0017 26.9 6.1 61 40-100 132-195 (230)
48 TIGR01834 PHA_synth_III_E poly 42.7 19 0.0004 32.5 2.2 35 84-118 279-313 (320)
49 PRK02224 chromosome segregatio 42.5 3.1E+02 0.0066 26.1 13.7 38 46-83 319-356 (880)
50 cd01279 HTH_HspR-like Helix-Tu 42.4 27 0.00059 25.1 2.7 32 64-95 67-98 (98)
51 PF09278 MerR-DNA-bind: MerR, 42.2 59 0.0013 20.9 4.0 31 58-88 35-65 (65)
52 PF10498 IFT57: Intra-flagella 42.1 2.6E+02 0.0057 25.2 10.5 72 78-149 236-307 (359)
53 PRK01156 chromosome segregatio 41.5 3.3E+02 0.0071 26.1 14.7 20 95-114 364-383 (895)
54 PF10168 Nup88: Nuclear pore c 41.4 3.6E+02 0.0078 26.6 14.3 95 37-136 539-649 (717)
55 COG1579 Zn-ribbon protein, pos 41.2 2.4E+02 0.0052 24.5 14.0 103 42-149 11-116 (239)
56 PF07956 DUF1690: Protein of U 40.5 1.9E+02 0.004 23.0 7.8 73 58-133 34-125 (142)
57 PF05529 Bap31: B-cell recepto 40.4 97 0.0021 24.4 5.7 40 85-124 152-191 (192)
58 PF04156 IncA: IncA protein; 40.3 1.7E+02 0.0037 22.5 10.1 40 95-134 124-163 (191)
59 TIGR00207 fliG flagellar motor 39.7 68 0.0015 28.1 5.2 47 59-110 274-320 (338)
60 COG0466 Lon ATP-dependent Lon 39.3 1.1E+02 0.0025 31.0 7.1 56 49-105 203-261 (782)
61 cd00584 Prefoldin_alpha Prefol 39.3 1.5E+02 0.0033 21.7 7.6 72 62-134 16-95 (129)
62 KOG3650 Predicted coiled-coil 38.8 35 0.00077 27.3 3.0 37 126-170 46-82 (120)
63 KOG3800 Predicted E3 ubiquitin 38.4 80 0.0017 28.7 5.5 69 86-165 58-128 (300)
64 PRK05686 fliG flagellar motor 38.1 72 0.0016 27.6 5.0 47 59-110 277-323 (339)
65 PF09712 PHA_synth_III_E: Poly 38.0 22 0.00047 30.8 1.9 31 84-114 262-292 (293)
66 PF00769 ERM: Ezrin/radixin/mo 38.0 2.5E+02 0.0053 23.7 9.7 78 47-124 15-105 (246)
67 PF08614 ATG16: Autophagy prot 37.7 2.1E+02 0.0045 22.8 7.8 75 66-151 113-187 (194)
68 PRK11637 AmiB activator; Provi 37.5 2.9E+02 0.0063 24.4 11.4 37 92-128 94-130 (428)
69 KOG2391 Vacuolar sorting prote 37.3 3.5E+02 0.0076 25.4 9.5 48 58-108 227-274 (365)
70 COG3352 FlaC Putative archaeal 36.9 2.5E+02 0.0055 23.5 8.2 83 57-143 49-136 (157)
71 PHA02562 46 endonuclease subun 36.5 3E+02 0.0066 24.3 12.9 91 50-144 308-401 (562)
72 COG1196 Smc Chromosome segrega 36.4 4.7E+02 0.01 26.5 15.2 13 94-106 828-840 (1163)
73 PF14379 Myb_CC_LHEQLE: MYB-CC 36.4 73 0.0016 22.1 3.9 30 55-84 9-45 (51)
74 COG4942 Membrane-bound metallo 34.8 4E+02 0.0086 25.2 9.5 34 94-127 66-99 (420)
75 TIGR00634 recN DNA repair prot 33.7 3E+02 0.0065 25.4 8.5 31 60-90 285-315 (563)
76 KOG3915 Transcription regulato 33.6 2.3E+02 0.0051 28.1 8.1 78 36-140 509-590 (641)
77 TIGR00293 prefoldin, archaeal 33.0 1.6E+02 0.0034 21.5 5.5 28 62-89 16-43 (126)
78 KOG0996 Structural maintenance 32.8 6.8E+02 0.015 27.2 14.6 122 34-169 778-918 (1293)
79 KOG4074 Leucine zipper nuclear 32.5 1.5E+02 0.0033 27.8 6.4 49 105-158 158-213 (383)
80 PF05700 BCAS2: Breast carcino 32.4 2.8E+02 0.0062 22.8 8.0 103 35-156 98-202 (221)
81 PF15346 ARGLU: Arginine and g 32.1 1.6E+02 0.0034 24.2 5.8 44 40-83 61-104 (149)
82 TIGR01795 CM_mono_cladeE monof 32.0 29 0.00064 25.5 1.5 20 94-113 3-22 (94)
83 COG1605 PheA Chorismate mutase 31.3 36 0.00079 24.9 1.9 24 90-113 4-27 (101)
84 PF14662 CCDC155: Coiled-coil 31.2 3.4E+02 0.0074 23.3 9.3 86 62-154 25-113 (193)
85 COG2096 cob(I)alamin adenosylt 30.2 2.1E+02 0.0045 24.3 6.3 57 93-150 87-161 (184)
86 PRK10203 hypothetical protein; 29.8 1.2E+02 0.0025 24.0 4.6 61 67-128 52-115 (122)
87 smart00502 BBC B-Box C-termina 29.8 1.8E+02 0.004 19.8 8.9 38 111-148 64-101 (127)
88 PF06705 SF-assemblin: SF-asse 29.7 3.2E+02 0.0069 22.5 15.0 117 44-170 59-187 (247)
89 PF05667 DUF812: Protein of un 29.3 3.4E+02 0.0074 26.2 8.4 86 71-156 403-504 (594)
90 PRK07194 fliG flagellar motor 29.3 1.2E+02 0.0027 26.4 5.1 47 59-110 271-317 (334)
91 PF03993 DUF349: Domain of Unk 29.1 1.6E+02 0.0035 19.3 4.6 47 107-153 4-51 (77)
92 KOG0018 Structural maintenance 28.9 4E+02 0.0087 28.4 9.2 99 11-120 635-733 (1141)
93 PF00456 Transketolase_N: Tran 28.5 1.5E+02 0.0032 26.2 5.5 55 92-146 263-327 (332)
94 PF14712 Snapin_Pallidin: Snap 28.1 2.1E+02 0.0045 19.8 7.9 71 41-111 7-81 (92)
95 cd00890 Prefoldin Prefoldin is 28.0 2.2E+02 0.0049 20.2 7.0 103 63-170 17-127 (129)
96 PF04645 DUF603: Protein of un 27.1 90 0.002 26.7 3.7 21 92-112 110-130 (181)
97 COG4026 Uncharacterized protei 26.9 4.9E+02 0.011 23.7 8.5 29 124-152 137-165 (290)
98 PF10226 DUF2216: Uncharacteri 26.8 2.6E+02 0.0057 24.1 6.5 20 48-67 17-36 (195)
99 PRK06285 chorismate mutase; Pr 26.4 36 0.00078 24.6 1.1 21 93-113 6-26 (96)
100 PRK07248 hypothetical protein; 26.0 32 0.0007 24.2 0.8 32 96-127 3-37 (87)
101 TIGR01808 CM_M_hiGC-arch monof 25.9 33 0.00072 24.0 0.8 19 95-113 1-19 (74)
102 PRK09343 prefoldin subunit bet 25.9 1.5E+02 0.0032 22.5 4.4 27 64-90 26-52 (121)
103 PF07888 CALCOCO1: Calcium bin 25.6 6.4E+02 0.014 24.7 13.7 51 65-115 177-234 (546)
104 cd07672 F-BAR_PSTPIP2 The F-BA 25.4 4.1E+02 0.0089 22.3 10.7 57 72-136 131-189 (240)
105 COG2739 Uncharacterized protei 25.0 2.9E+02 0.0062 21.9 5.9 36 116-152 56-91 (105)
106 TIGR01807 CM_P2 chorismate mut 24.7 34 0.00075 23.5 0.7 31 97-127 2-35 (76)
107 PF10168 Nup88: Nuclear pore c 24.3 7E+02 0.015 24.6 11.4 47 123-170 601-651 (717)
108 TIGR01803 CM-like chorismate m 24.1 42 0.00091 23.5 1.1 17 97-113 2-18 (82)
109 PHA02109 hypothetical protein 23.8 1.5E+02 0.0032 26.1 4.5 54 74-128 169-227 (233)
110 PF02996 Prefoldin: Prefoldin 23.8 1E+02 0.0022 21.9 3.0 53 63-115 7-67 (120)
111 TIGR02135 phoU_full phosphate 23.4 3.1E+02 0.0068 20.3 10.6 93 45-140 42-145 (212)
112 KOG0612 Rho-associated, coiled 23.1 1E+03 0.022 26.1 11.3 100 70-170 462-579 (1317)
113 PRK10622 pheA bifunctional cho 22.9 50 0.0011 29.7 1.6 20 92-111 3-22 (386)
114 cd07655 F-BAR_PACSIN The F-BAR 22.7 4.5E+02 0.0098 21.9 11.5 62 93-161 167-228 (258)
115 KOG0225 Pyruvate dehydrogenase 22.6 50 0.0011 31.0 1.6 41 87-127 293-338 (394)
116 PF03961 DUF342: Protein of un 22.5 5.6E+02 0.012 22.9 8.6 31 118-148 371-401 (451)
117 KOG0964 Structural maintenance 22.5 1E+03 0.022 25.8 11.3 109 62-170 254-409 (1200)
118 TIGR01805 CM_mono_grmpos monof 22.5 32 0.00068 24.0 0.2 31 97-127 2-35 (81)
119 TIGR01799 CM_T chorismate muta 22.2 32 0.0007 24.1 0.2 44 97-140 2-49 (83)
120 PRK04778 septation ring format 21.9 6.5E+02 0.014 23.4 12.9 116 40-156 382-513 (569)
121 PF11932 DUF3450: Protein of u 21.8 2.7E+02 0.0059 22.8 5.5 88 62-156 52-152 (251)
122 smart00498 FH2 Formin Homology 21.6 5.2E+02 0.011 23.1 7.6 55 83-137 296-353 (432)
123 PRK11032 hypothetical protein; 21.5 1.7E+02 0.0036 24.0 4.2 55 60-117 11-66 (160)
124 cd00176 SPEC Spectrin repeats, 21.5 3.1E+02 0.0068 19.6 6.0 76 37-130 33-108 (213)
125 PRK12595 bifunctional 3-deoxy- 21.5 56 0.0012 29.1 1.6 22 92-113 2-23 (360)
126 PRK09239 chorismate mutase; Pr 21.4 59 0.0013 24.4 1.5 33 95-127 11-46 (104)
127 PF06216 RTBV_P46: Rice tungro 21.4 2E+02 0.0042 26.7 5.0 48 47-94 67-117 (389)
128 cd05511 Bromo_TFIID Bromodomai 21.0 3.5E+02 0.0076 20.0 7.8 70 95-167 42-111 (112)
129 KOG3654 Uncharacterized CH dom 20.6 1.7E+02 0.0036 29.3 4.6 37 50-86 415-451 (708)
130 COG2433 Uncharacterized conser 20.5 8.9E+02 0.019 24.5 11.5 70 84-157 440-512 (652)
131 PRK11199 tyrA bifunctional cho 20.4 58 0.0012 28.5 1.4 36 92-127 1-39 (374)
132 PF05769 DUF837: Protein of un 20.0 5E+02 0.011 21.3 8.2 71 72-157 9-84 (181)
No 1
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=100.00 E-value=5.9e-76 Score=472.19 Aligned_cols=154 Identities=79% Similarity=1.092 Sum_probs=147.4
Q ss_pred hhccCCCccccCCCCCCcc-hHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHH
Q 030728 16 MLQQSSGNLSFSSSNLSKD-DEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRK 94 (172)
Q Consensus 16 ~~~~~sg~~~~~~s~~~~e-~ee~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RK 94 (172)
+..+++|+++++++++.++ +++|||||+|+|+|||++||||||+||+|||+|||||||+|||||+||+|||+|+|||||
T Consensus 5 ~~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~Rk 84 (159)
T PF04949_consen 5 LRVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRK 84 (159)
T ss_pred hhcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHH
Confidence 4456888888877666554 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhhh
Q 030728 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDS 169 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~i~s 169 (172)
||++||||||+|||+|||||++|||||+|||+||+||||||+||++||++||+||+||||+||||||||||+|++
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ies 159 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIES 159 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=94.75 E-value=0.1 Score=39.58 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (172)
Q Consensus 51 EEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg 114 (172)
+++...--+|+++.+.+.+.+|.-..+ .+..=|..|+-|++.||..++.|||.+...|..|.
T Consensus 55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444456666666666777665543 56778999999999999999999999998887664
No 3
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=94.16 E-value=0.21 Score=39.28 Aligned_cols=61 Identities=20% Similarity=0.437 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (172)
Q Consensus 52 EIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg 114 (172)
.+...--.|++++..+++++|.--.. .+..-|..|+=|+|+||..++.|||.++++|.-|.
T Consensus 69 ~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 69 QVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344456667777777777654321 13445888999999999999999999999886553
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.63 E-value=5 Score=37.58 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh
Q 030728 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKS 166 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~ 166 (172)
..+.++++|+.++++|+-+|....+-..+|.++.+-|+.-.+...+|....-.|..-=++++-++.+.+..+
T Consensus 952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~ 1023 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999888899999999999999999999998887777776677766664444333
No 5
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.42 E-value=16 Score=34.06 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhhh-HHHHhhHHHHHHHHhhhhh
Q 030728 135 NKEKVQLITKLMELVGE-SEKLRMKKLEELSKSIDSI 170 (172)
Q Consensus 135 nkEKa~LV~~LmELv~E-SErlRmkKLEELsK~i~sl 170 (172)
.........++.+++.+ -+.++-.+...|++.+...
T Consensus 478 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~ 514 (650)
T TIGR03185 478 LERAITIADKAKKTLKEFREKLLERKLQQLEEEITKS 514 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555554443 4556667777777766543
No 6
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.52 E-value=2.1 Score=31.90 Aligned_cols=53 Identities=28% Similarity=0.488 Sum_probs=39.2
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhh
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~t 116 (172)
+.+.+--.++..-.+||+.+-.+++.| |++.+|..++..|..++.+++-++..
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333334445556678999999999988 88999988888888888777655443
No 7
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=85.96 E-value=9 Score=28.83 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHH
Q 030728 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKL 155 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErl 155 (172)
..++...|-.|-..-.+++.|...|+.|++.|..+...||.-. -++.|-...-+.=.+||.+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEEL 115 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888999999999999999999999999864 3444444444444445444
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.76 E-value=22 Score=30.59 Aligned_cols=88 Identities=20% Similarity=0.323 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHH
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK 138 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEK 138 (172)
++..++.+....++.+..+|...-.| +++-.+.++..+|..|..++-+|.-..+.-...+.+...--+..++.+.+|
T Consensus 177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666665555 555556888888888888888888777777777777777777777777777
Q ss_pred HHHHHHHHHHh
Q 030728 139 VQLITKLMELV 149 (172)
Q Consensus 139 a~LV~~LmELv 149 (172)
..+...+-++=
T Consensus 254 ~~l~~eI~e~~ 264 (325)
T PF08317_consen 254 QELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHH
Confidence 77766665543
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.54 E-value=50 Score=32.89 Aligned_cols=116 Identities=35% Similarity=0.518 Sum_probs=74.1
Q ss_pred HHHHhhh----hhhHHHHHHHHHHH-------------HHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHH
Q 030728 40 RSALTTF----RAKEEEIEKKKLEV-------------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKK 102 (172)
Q Consensus 40 rsals~F----~aKEEEIErkKmEV-------------rekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKk 102 (172)
|.=|.++ .|++.+.+.---+| =+|-++++..+++|--|++-=-.+|-.+-|-.-.+|..+++|
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 56666555544433 345566666677776665543344444555555689999999
Q ss_pred HhhhhhccccchhhHHhhHHHHH----------------HHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHH
Q 030728 103 IDSVNKELKPLGHTCQKKEREYK----------------EALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEE 162 (172)
Q Consensus 103 ID~vNreLKPLg~tcqKKEkEYK----------------eaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEE 162 (172)
||.+...|+ .|++... .|++.+.+-+.+|..++..|-++-..+++-+.--|+-
T Consensus 401 ie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~ 469 (775)
T PF10174_consen 401 IENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELET 469 (775)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887775 3444443 4555566888999999999888877777666554443
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.42 E-value=49 Score=33.57 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 030728 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKL 145 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~L 145 (172)
..++...+..|..+..+|-||-+.-.+...+|.+.....+.+..+...-++.+
T Consensus 894 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1311)
T TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777778888888877777777777776666666655544444443
No 11
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.07 E-value=26 Score=27.89 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=32.9
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhH
Q 030728 63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tc 117 (172)
.++..-..+++...|++.|+..++. .++++..-|++|+.....|......-
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~----~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIER----LRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777777777777765 46677777777777666666554443
No 12
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=79.08 E-value=25 Score=28.71 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=40.8
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHH-HHHHhhhhhccccchhhHHhhHHHHHHHHHHh
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~v-RKkID~vNreLKPLg~tcqKKEkEYKeaLEAf 131 (172)
|||...---|.+...+....+.+.+.+++-+++|+... +.|+...+.-|.-+..+=..-.++.-++.++|
T Consensus 149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~ 219 (224)
T cd07623 149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAF 219 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455556677778888888888888888776 45555555555544444443444444444443
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.70 E-value=80 Score=32.11 Aligned_cols=104 Identities=13% Similarity=0.275 Sum_probs=67.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccc---hhHHHHHHHHHHHhhhhhccccchhhHHh
Q 030728 43 LTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALAD---PMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (172)
Q Consensus 43 ls~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aD---P~RKEV~~vRKkID~vNreLKPLg~tcqK 119 (172)
++..+++..++...+..+...++ +...-..+|..+.++++.+.. -...++.-+...++.+..++.-+-.....
T Consensus 859 I~~Lq~ki~el~~~klkl~~~l~----~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1311)
T TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQ----RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555333 333333445555555554433 25677888888888998888888889999
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 030728 120 KEREYKEALEAFNEKNKEKVQLITKLMELVG 150 (172)
Q Consensus 120 KEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ 150 (172)
++.+....+..|+..-..-..+...+-+.+.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~ 965 (1311)
T TIGR00606 935 SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888877777777666665544
No 14
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.91 E-value=23 Score=26.47 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=19.7
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhcc
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALA 89 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~a 89 (172)
+.++++++.++.....+....+.|+.+.
T Consensus 23 ~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 23 EALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777777777777777777665
No 15
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=75.40 E-value=24 Score=24.36 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=46.6
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchh--------------HH-HHHHHHHHHhhhhhccccchhhHHhhHHHHHH
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPM--------------RK-EVAVVRKKIDSVNKELKPLGHTCQKKEREYKE 126 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~--------------RK-EV~~vRKkID~vNreLKPLg~tcqKKEkEYKe 126 (172)
..|.++++.++.+-+++.....||+.+.|+. +. =+..+.++++.+..+++-|-......++++++
T Consensus 15 ~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 15 QQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999997761 12 23455666666666666555555555555555
Q ss_pred HHHH
Q 030728 127 ALEA 130 (172)
Q Consensus 127 aLEA 130 (172)
.=..
T Consensus 95 ~~~~ 98 (106)
T PF01920_consen 95 LKKK 98 (106)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.15 E-value=53 Score=31.75 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHh
Q 030728 122 REYKEALEAFNEKNKEKVQLITKLMELVGESEKLR 156 (172)
Q Consensus 122 kEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlR 156 (172)
+++.+-+..++.+.+|+-.+..+|.++..+-|.+.
T Consensus 223 ~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 223 RELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777777777766655555
No 17
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.03 E-value=40 Score=26.23 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=34.8
Q ss_pred chhHHHHHHHHHHHhhhh---hccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 030728 90 DPMRKEVAVVRKKIDSVN---KELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLM 146 (172)
Q Consensus 90 DP~RKEV~~vRKkID~vN---reLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~Lm 146 (172)
|-++.|+-..-+..|.+. .++.-|-.-+.-.+..|.-+|+.|-||+-+=-.|=..+.
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 444555555555554442 334445556667788899999999998766444444333
No 18
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=73.05 E-value=48 Score=26.77 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHH
Q 030728 61 REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV 99 (172)
Q Consensus 61 rekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~v 99 (172)
.+||...-..+.+-..+......+.+.+++-+++||...
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777777777777777777777765
No 19
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=71.54 E-value=8.6 Score=28.00 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 60 VrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
++++|.+-++ .++=..|++|++.++.+...+|...|+.|=..=|+|
T Consensus 56 ~~~~il~nms-----~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l 101 (110)
T PF01706_consen 56 LREKILSNMS-----KRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRL 101 (110)
T ss_dssp HHHHHHTTS------HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899988885 244557999999999999999999999986554444
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=69.16 E-value=1e+02 Score=28.93 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhh
Q 030728 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (172)
Q Consensus 84 ELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEK 134 (172)
.+..+-+|..+.+..+++.++.+..++.-|-..-..-+..++++-+.+...
T Consensus 297 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~ 347 (880)
T PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL 347 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444577777777777777777666555544444444444444444333
No 21
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=68.50 E-value=42 Score=24.25 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=35.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 40 rsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
...+..|.++-+++..---....++...-.+.+.-|+-| --|++++..|.|||..++..|
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l-----------~~mK~DLd~i~krir~lk~kl 80 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLL-----------KEMKKDLDYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777776665444333333333333333333333 337889999999999998765
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.38 E-value=87 Score=33.40 Aligned_cols=106 Identities=28% Similarity=0.428 Sum_probs=71.9
Q ss_pred HHHHHHhhhhHHHHhhHHHHHH-------HHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhh
Q 030728 62 EKVQAHLGRVEEETKRLATIRE-------ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~Ire-------ELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEK 134 (172)
++|..||+.++.+.+++..+-+ -+.+--.-..+++...++.+|.++-+++-+-.--..-+.+|++|.++--|-
T Consensus 910 ~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 910 EKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666544322 112222345688888999999999999999988888999999999999998
Q ss_pred hHHHHHHHHHHHHHhhhHHHHhhH-------HHHHHHHhhh
Q 030728 135 NKEKVQLITKLMELVGESEKLRMK-------KLEELSKSID 168 (172)
Q Consensus 135 nkEKa~LV~~LmELv~ESErlRmk-------KLEELsK~i~ 168 (172)
+++=.+++..+ +-+..++=-.+. |+++.+..+.
T Consensus 990 k~~~~~~k~~~-e~i~k~~~~lk~~rId~~~K~e~~~~~l~ 1029 (1293)
T KOG0996|consen 990 KKELRDLKSEL-ENIKKSENELKAERIDIENKLEAINGELN 1029 (1293)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 88887777654 444444433333 5555554443
No 23
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=68.14 E-value=53 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=10.9
Q ss_pred HHHhhhhhccccchhhHHhhHHHHH
Q 030728 101 KKIDSVNKELKPLGHTCQKKEREYK 125 (172)
Q Consensus 101 KkID~vNreLKPLg~tcqKKEkEYK 125 (172)
.|++.++.++.-+.+.+...+++|.
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=67.44 E-value=1.1e+02 Score=28.70 Aligned_cols=78 Identities=28% Similarity=0.352 Sum_probs=44.1
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHH---HHHHHHHHhhhhhHHHHH
Q 030728 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKER---EYKEALEAFNEKNKEKVQ 140 (172)
Q Consensus 64 V~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEk---EYKeaLEAfNEKnkEKa~ 140 (172)
+.+++..++.....+..|.+.|. -.+++++.+.+.|..+..++..+....+..+. .+.++.+.|+..+.+...
T Consensus 174 ~~~~~~~l~~~l~~l~~i~~~l~----~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~ 249 (880)
T PRK03918 174 IKRRIERLEKFIKRTENIEELIK----EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444544443 34666777777777777777777766655543 455666666655555555
Q ss_pred HHHHH
Q 030728 141 LITKL 145 (172)
Q Consensus 141 LV~~L 145 (172)
+-..+
T Consensus 250 l~~~~ 254 (880)
T PRK03918 250 LEGSK 254 (880)
T ss_pred HHHHH
Confidence 44443
No 25
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.17 E-value=47 Score=29.48 Aligned_cols=85 Identities=27% Similarity=0.366 Sum_probs=57.1
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccch--------hHH-HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhh
Q 030728 63 KVQAHLGRVEEETKRLATIREELEALADP--------MRK-EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNE 133 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~IreELE~~aDP--------~RK-EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNE 133 (172)
.+-+.|+.+|..-=.+.-+|+=|+.+.+- ++. |.+..+++|.....+|.-+-..|-++|++++++-+.+-
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~- 231 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERIT- 231 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455666665554555555444444433 232 66778889999999999999999999999999988872
Q ss_pred hhHHHHHHHHHHHHHhhhHHH
Q 030728 134 KNKEKVQLITKLMELVGESEK 154 (172)
Q Consensus 134 KnkEKa~LV~~LmELv~ESEr 154 (172)
..-.+|.+|=-+|-|
T Consensus 232 ------e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 232 ------EMKGRLGELEMESTR 246 (269)
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 334456666555444
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=67.10 E-value=1.5e+02 Score=31.15 Aligned_cols=55 Identities=27% Similarity=0.527 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhc---cchhHHHHHHHHHHHhhhhhc
Q 030728 55 KKKLEVREKVQAHLGRVEEETKRLATIREELEAL---ADPMRKEVAVVRKKIDSVNKE 109 (172)
Q Consensus 55 rkKmEVrekV~aqLGRvEeetkrLa~IreELE~~---aDP~RKEV~~vRKkID~vNre 109 (172)
-+.-++.+++...+|.+++...+|..|-..+..+ +|-+--|+...|+..|.+=|+
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999998887765554 455667788888888777664
No 27
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=66.71 E-value=24 Score=33.75 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHH---hhHHHHHHHHHhccchhHHHHHHHHHHHhhhh
Q 030728 46 FRAKEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (172)
Q Consensus 46 F~aKEEEIErkKmEVrekV~aqLGRvEeet---krLa~IreELE~~aDP~RKEV~~vRKkID~vN 107 (172)
+=.+|-++-+-+.+++.+|+.++.+-..|- ..|..|++||-.. |.--.|++.+|+||+..+
T Consensus 197 lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~-~~~~~~~~~~~~k~~~~~ 260 (775)
T TIGR00763 197 LLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIE-KDDKDELEKLKEKLEELK 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchhHHHHHHHHHHhcC
Confidence 344566777788889999999998766553 3677888998544 344579999999998765
No 28
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=65.14 E-value=1.3e+02 Score=29.33 Aligned_cols=87 Identities=25% Similarity=0.365 Sum_probs=62.5
Q ss_pred HHHHHhhhhHHHHhhHHHH----------HHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhh
Q 030728 63 KVQAHLGRVEEETKRLATI----------REELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~I----------reELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfN 132 (172)
....+|....+++..|+.. -.+|+.+.+-.++++..++..+-..++.++-|-..|.+.-++|.+++..++
T Consensus 200 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (670)
T KOG0239|consen 200 ELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESN 279 (670)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554 246677777778888888888888999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHh
Q 030728 133 EKNKEKVQLITKLMELV 149 (172)
Q Consensus 133 EKnkEKa~LV~~LmELv 149 (172)
..-.+-+.+-..|.+-.
T Consensus 280 ~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 280 TLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87544444444444444
No 29
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=65.12 E-value=1.2e+02 Score=28.37 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.1
Q ss_pred HHhhhh
Q 030728 102 KIDSVN 107 (172)
Q Consensus 102 kID~vN 107 (172)
.|+.++
T Consensus 867 ~~~~l~ 872 (1179)
T TIGR02168 867 LIEELE 872 (1179)
T ss_pred hHHHHH
Confidence 333333
No 30
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.07 E-value=70 Score=33.48 Aligned_cols=95 Identities=26% Similarity=0.346 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHH
Q 030728 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV 139 (172)
Q Consensus 60 VrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa 139 (172)
+++++..++--++++.+-++--++| ++.+++..+.+|+.+-++|.--+..|+.+ +|-+++.-++=.
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~ee-------Le~~~~et~~~~s~~~~~~~e~~~k~~~~-------~ek~~~~~~~v~ 321 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEE-------LESEKKETRSKISQKQRELNEALAKVQEK-------FEKLKEIEDEVE 321 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh-------HHhHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3444445555555555544444444 44588888999999999988888887765 344444445545
Q ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHhhhh
Q 030728 140 QLITKLMELVGESEKLRMKKLEELSKSIDS 169 (172)
Q Consensus 140 ~LV~~LmELv~ESErlRmkKLEELsK~i~s 169 (172)
.+.+.|-.|-... -.|++-++..-|.|..
T Consensus 322 ~~~~~le~lk~~~-~~rq~~i~~~~k~i~~ 350 (1072)
T KOG0979|consen 322 EKKNKLESLKKAA-EKRQKRIEKAKKMILD 350 (1072)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5555555554443 3566666666665554
No 31
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=63.98 E-value=16 Score=35.54 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=47.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhHHHH---hhHHHHHHHHHhccchhHHHHHHHHHHHhhhh
Q 030728 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (172)
Q Consensus 45 ~F~aKEEEIErkKmEVrekV~aqLGRvEeet---krLa~IreELE~~aDP~RKEV~~vRKkID~vN 107 (172)
.+=.+|-++-+-+.++..+|+.++.+-..|- ..|..|++|| |..|+--.|+..+|+||+..+
T Consensus 198 ~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~el-g~~~~~~~~~~~~~~~~~~~~ 262 (784)
T PRK10787 198 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL-GEMDDAPDENEALKRKIDAAK 262 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccc-cCCCcchhHHHHHHHHHHhcC
Confidence 3446677777788899999999998766553 4677888899 555666779999999998765
No 32
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=60.33 E-value=91 Score=26.35 Aligned_cols=68 Identities=15% Similarity=0.316 Sum_probs=40.7
Q ss_pred HhhhhhhHHHHHHHHHHH--------HHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHH-HHHHhhhhhcc
Q 030728 43 LTTFRAKEEEIEKKKLEV--------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSVNKEL 110 (172)
Q Consensus 43 ls~F~aKEEEIErkKmEV--------rekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~v-RKkID~vNreL 110 (172)
+..++.-+.++.+++-.+ -||++.----|.+--.+..+.+.+.+.+++-+|+||... +.|++....-|
T Consensus 132 ~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 132 WQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666676665431 123332222344455677778888999999999999877 44554433333
No 33
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=58.49 E-value=1.6e+02 Score=27.60 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHh---hHHHHHHHHhhhhh
Q 030728 122 REYKEALEAFNEKNKEKVQLITKLMELVGESEKLR---MKKLEELSKSIDSI 170 (172)
Q Consensus 122 kEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlR---mkKLEELsK~i~sl 170 (172)
..|.....-|++-...+.+|-..+-++-.+..++- +.-+..++.++..+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~ 1044 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNEN 1044 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666777666666666666666 77777777776543
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=56.64 E-value=1.8e+02 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHhhhhhccccchhhHHhhHHHH
Q 030728 91 PMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREY 124 (172)
Q Consensus 91 P~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEY 124 (172)
+.+.+...+++.++.++..|..+...+....+.|
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i 683 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556555555555555544444
No 35
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=56.19 E-value=17 Score=26.88 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (172)
Q Consensus 60 VrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg 114 (172)
.|+--+.||..|-+-.+.|-....--.-.+|..+.-..-.+-+|-.||++|.-|.
T Consensus 29 ~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~~L~~~~~~Iqevn~~l~~l~ 83 (84)
T PF11414_consen 29 ERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHREQLEFLLAQIQEVNRCLFGLI 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCcccccccchhhHHHHHHHHHHHHHHHhc
Confidence 5777888999999999999888877777889999999999999999999987653
No 36
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=55.81 E-value=1.3e+02 Score=25.65 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=53.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHH---HHHhhhhhccccchhhH
Q 030728 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR---KKIDSVNKELKPLGHTC 117 (172)
Q Consensus 42 als~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vR---KkID~vNreLKPLg~tc 117 (172)
+|.-.+.|-.+.++.|-+|. ..++.++.|.+.|.+.+.|.+.|-+--+.=|+.+| -=|+.++..+|-+-..|
T Consensus 2 ~i~~ir~K~~~lek~k~~i~----~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEIL----QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888876655 55678999999999999999999887776666664 44556665555444433
No 37
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.76 E-value=1.6e+02 Score=26.52 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030728 90 DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEL 148 (172)
Q Consensus 90 DP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmEL 148 (172)
|-.++++..+|=+.|..|...+-+-.-.+-.=.++++.++-+++--.+.-.+..+|.+|
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666655555544444444444555554444444444444444443
No 38
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=53.15 E-value=1.2e+02 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.392 Sum_probs=32.1
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhhhHHHHhhHHHH
Q 030728 114 GHTCQKKEREYKEALEAFNEKNKEK-VQLITKLMELVGESEKLRMKKLE 161 (172)
Q Consensus 114 g~tcqKKEkEYKeaLEAfNEKnkEK-a~LV~~LmELv~ESErlRmkKLE 161 (172)
.+.|.+-..+|..++.+||.-...- -..+..+++-+..-|..|...|-
T Consensus 174 ~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k 222 (251)
T cd07653 174 TQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTV 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Confidence 5678889999999999998874433 23445555555555555655544
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=52.87 E-value=2.6e+02 Score=28.26 Aligned_cols=60 Identities=23% Similarity=0.433 Sum_probs=45.9
Q ss_pred HHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHH---HHHHhhhHHHHhh
Q 030728 98 VVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITK---LMELVGESEKLRM 157 (172)
Q Consensus 98 ~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~---LmELv~ESErlRm 157 (172)
.++++|+.+.+++.-||..=-.---+|.++.+-|++-+.+...|... |.+.+.+=.+.+-
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~ 1008 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999977777777788889999999999999998888654 4444444444443
No 40
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=52.43 E-value=42 Score=22.20 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHHHhhh--hhHHHHHHHHHHHH-HhhhHHHHhhHH
Q 030728 118 QKKEREYKEALEAFNE--KNKEKVQLITKLME-LVGESEKLRMKK 159 (172)
Q Consensus 118 qKKEkEYKeaLEAfNE--KnkEKa~LV~~LmE-Lv~ESErlRmkK 159 (172)
..-+.+|.+++..++. -.++..+|..++.+ ..+..|+.+++.
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~~e~~~l~~ 123 (125)
T smart00766 79 ENLEEEFLDTLARLRKQLLERRIEELIAKLRRSGLTVEEKKELQA 123 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3446788888888866 45677778887776 777888876654
No 41
>PRK01156 chromosome segregation protein; Provisional
Probab=52.25 E-value=2.2e+02 Score=27.25 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=22.9
Q ss_pred HhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccc
Q 030728 67 HLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 67 qLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPL 113 (172)
.++.++.+-.+|...+.+++.. +.++..++..|+.++.++.-+
T Consensus 620 ~~~~le~~~~~le~~~~~l~~~----~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 620 SIREIENEANNLNNKYNEIQEN----KILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544 555555555555555544443
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.57 E-value=1.9e+02 Score=25.59 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=62.6
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHH
Q 030728 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLIT 143 (172)
Q Consensus 64 V~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~ 143 (172)
+......+..|...|..+-.|++.. | .-|...+|.+|..++.++.+.-+.-.-++.+..+--..-++.+..|+.+.+
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~-d--~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDC-D--PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433 2 348888899999999999988888888888888888888888888888888
Q ss_pred HHHHHhhhHHHHh
Q 030728 144 KLMELVGESEKLR 156 (172)
Q Consensus 144 ~LmELv~ESErlR 156 (172)
.+.++=...+.-|
T Consensus 254 ~I~~ae~~~~~~r 266 (312)
T smart00787 254 EIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHhcC
Confidence 8887655444333
No 43
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=49.02 E-value=1.6e+02 Score=25.04 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=25.0
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHH
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV 99 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~v 99 (172)
||++.-..-|.+-.+|..+.+.+.+.+++-||+||...
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rF 196 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRF 196 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555566677777777777777777777654
No 44
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=48.95 E-value=21 Score=30.63 Aligned_cols=38 Identities=21% Similarity=0.537 Sum_probs=28.4
Q ss_pred cccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 030728 110 LKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVG 150 (172)
Q Consensus 110 LKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ 150 (172)
+-|+|++|-..||. +.+.|+.+.+.+..||..|.+-..
T Consensus 103 ~SpiGr~a~~eer~---~f~~~D~~~~iR~~~v~~L~~~f~ 140 (220)
T PF03332_consen 103 FSPIGRNASQEERD---EFDEYDKKHKIREKLVEALKKEFP 140 (220)
T ss_dssp E-SS-TTS-HHHHH---HHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred ECcccCcCCHHHHH---hhhhcChhhhHHHHHHHHHHHHCC
Confidence 46999999987764 566789999999999999886543
No 45
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=47.02 E-value=1e+02 Score=25.24 Aligned_cols=64 Identities=31% Similarity=0.500 Sum_probs=38.7
Q ss_pred HhhhhHHHHhhHHH-------HHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhh
Q 030728 67 HLGRVEEETKRLAT-------IREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (172)
Q Consensus 67 qLGRvEeetkrLa~-------IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEK 134 (172)
-|+|+|||..|-+. +|+.||.+ ++.-..++-=|..+..++.-+-.--..||.+|+.--++||.-
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~----~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y 135 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQA----RKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY 135 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999887 66666543 222233333333333333333334456888888888888754
No 46
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.20 E-value=1.6e+02 Score=23.50 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhhccccc
Q 030728 94 KEVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 94 KEV~~vRKkID~vNreLKPL 113 (172)
..+..++++|+..+..+.-+
T Consensus 77 ~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 77 ERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 47
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.24 E-value=79 Score=26.91 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHhhhhhhHHHHHHHHHH--H-HHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHH
Q 030728 40 RSALTTFRAKEEEIEKKKLE--V-REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100 (172)
Q Consensus 40 rsals~F~aKEEEIErkKmE--V-rekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vR 100 (172)
..|-+.-+.|.+..+|-|+- + .+||..-+.-+++.+++-......++.+++-|+.|+...=
T Consensus 132 ~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~ 195 (230)
T cd07625 132 IQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWT 195 (230)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888887763 3 5689888899999999999999999999999999886553
No 48
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=42.71 E-value=19 Score=32.51 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHhccchhHHHHHHHHHHHhhhhhccccchhhHH
Q 030728 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (172)
Q Consensus 84 ELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcq 118 (172)
=|..|.=|+|.||..|-|+|..+-|+++-|...-.
T Consensus 279 ~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 279 LLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988865433
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=42.48 E-value=3.1e+02 Score=26.07 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHH
Q 030728 46 FRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIRE 83 (172)
Q Consensus 46 F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~Ire 83 (172)
+..+-++++....++++.+....|.++.-.+.+..+..
T Consensus 319 l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~ 356 (880)
T PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE 356 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555445444444333333333333
No 50
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=42.39 E-value=27 Score=25.14 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHhccchhHHH
Q 030728 64 VQAHLGRVEEETKRLATIREELEALADPMRKE 95 (172)
Q Consensus 64 V~aqLGRvEeetkrLa~IreELE~~aDP~RKE 95 (172)
+.+.+..++.--.++..+.+|+-++|.|-|||
T Consensus 67 ~l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (98)
T cd01279 67 IIELYPQVLLLQCRSCEHATELIGCAKPCRKE 98 (98)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhcccccccC
Confidence 34556667777778889999999999999986
No 51
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=42.15 E-value=59 Score=20.89 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhHHHHhhHHHHHHHHHhc
Q 030728 58 LEVREKVQAHLGRVEEETKRLATIREELEAL 88 (172)
Q Consensus 58 mEVrekV~aqLGRvEeetkrLa~IreELE~~ 88 (172)
-.+.+-+..++..+++....|+.++..|..+
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L~~l 65 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQLEHL 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455778888888888888899988888754
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.15 E-value=2.6e+02 Score=25.23 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 030728 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELV 149 (172)
Q Consensus 78 La~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv 149 (172)
+...+..|+.|++-.-+-++.|.+|=..+|.+|.||.+--...-.++.++-+.||+-+.--..+-..|-++-
T Consensus 236 ~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455777777777788888888889999999999998888888888888888888776666655555543
No 53
>PRK01156 chromosome segregation protein; Provisional
Probab=41.53 E-value=3.3e+02 Score=26.14 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhhhccccch
Q 030728 95 EVAVVRKKIDSVNKELKPLG 114 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg 114 (172)
+...+.++|...+..+.-++
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~ 383 (895)
T PRK01156 364 DYNSYLKSIESLKKKIEEYS 383 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444333
No 54
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.40 E-value=3.6e+02 Score=26.57 Aligned_cols=95 Identities=27% Similarity=0.451 Sum_probs=52.7
Q ss_pred HhhHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHH----HHHHHHHh
Q 030728 37 EMSRSALTTFRAK--------EEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEV----AVVRKKID 104 (172)
Q Consensus 37 e~srsals~F~aK--------EEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV----~~vRKkID 104 (172)
++--.|...|+.. -++|+++---.......||.++.+-..+...|++--+.|+|- -+++ +.+.+|+|
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR-~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER-YEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5555677788732 223333333333344445555555455555555555666662 1222 34667777
Q ss_pred hh----hhccccchhhHHhhHHHHHHHHHHhhhhhH
Q 030728 105 SV----NKELKPLGHTCQKKEREYKEALEAFNEKNK 136 (172)
Q Consensus 105 ~v----NreLKPLg~tcqKKEkEYKeaLEAfNEKnk 136 (172)
.| |..+.+|. .-|+++++=|+.++++-+
T Consensus 618 ~vl~~l~~~~P~LS----~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 618 RVLQLLNSQLPVLS----EAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHhccCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 55 33333333 359999999999998753
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.25 E-value=2.4e+02 Score=24.52 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=64.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhH---HHHHHHHHHHhhhhhccccchhhHH
Q 030728 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR---KEVAVVRKKIDSVNKELKPLGHTCQ 118 (172)
Q Consensus 42 als~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~R---KEV~~vRKkID~vNreLKPLg~tcq 118 (172)
+|+.....-..++.+.-+.++-+.+...-.+.--+++..+..+++.|-+--+ .|+..+|.||+..-..| +-.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-----~~v 85 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----SAV 85 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc
Confidence 4556666666677777777777777777777778888888888888765443 35666677776654444 456
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 030728 119 KKEREYKEALEAFNEKNKEKVQLITKLMELV 149 (172)
Q Consensus 119 KKEkEYKeaLEAfNEKnkEKa~LV~~LmELv 149 (172)
+.+++|..-.-.+-.-+...+.|=..|.+|.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776544344334444444444444433
No 56
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=40.54 E-value=1.9e+02 Score=23.00 Aligned_cols=73 Identities=29% Similarity=0.469 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhHHHHhhHHHHHHHHHh--cc----c--------hhHHHHHHHHHHHhhhhhccccc-----hhhHH
Q 030728 58 LEVREKVQAHLGRVEEETKRLATIREELEA--LA----D--------PMRKEVAVVRKKIDSVNKELKPL-----GHTCQ 118 (172)
Q Consensus 58 mEVrekV~aqLGRvEeetkrLa~IreELE~--~a----D--------P~RKEV~~vRKkID~vNreLKPL-----g~tcq 118 (172)
.-|.+||.+.|-++++++. ..+.+-|+. .+ | ..-++|+.+|+|++.. +.|+++ ...|.
T Consensus 34 ~~iq~Rva~eL~~L~~~~~--~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~-~kl~~~~~~~~~~~v~ 110 (142)
T PF07956_consen 34 LHIQERVAEELKRLEEEEL--KKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEER-KKLRELKEEKNSEEVE 110 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHH-HHHHhccccccchhhH
Confidence 3577899999999998873 233333322 22 2 2456778888888743 222222 23566
Q ss_pred hhHHHHHHHHHHhhh
Q 030728 119 KKEREYKEALEAFNE 133 (172)
Q Consensus 119 KKEkEYKeaLEAfNE 133 (172)
.-..+.-.||-..+.
T Consensus 111 ~aR~~vv~CL~~N~~ 125 (142)
T PF07956_consen 111 KARSAVVRCLRENDG 125 (142)
T ss_pred HHHHHHHHHHHHCCC
Confidence 666666666654443
No 57
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.39 E-value=97 Score=24.36 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=31.1
Q ss_pred HHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHH
Q 030728 85 LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREY 124 (172)
Q Consensus 85 LE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEY 124 (172)
...-.++.-.|++...+.|+..+.++.-|-.-|..-.+||
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567778888888888888888888888887777777
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.28 E-value=1.7e+02 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhh
Q 030728 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEK 134 (172)
+...+..+++.++...+++-+.+..=.++-++..+...+.
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 163 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQEL 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444444443333333333333
No 59
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=39.69 E-value=68 Score=28.13 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
++|++++.-+. .|.-..|++|++.||-.-.++|+..|+.|=.+=|+|
T Consensus 274 e~~~~il~nmS-----~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L 320 (338)
T TIGR00207 274 PLREKFLNNMS-----QRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKL 320 (338)
T ss_pred HHHHHHHHHhh-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 47777777664 233446899999999999999999999998777766
No 60
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=39.33 E-value=1.1e+02 Score=30.99 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHH---hhHHHHHHHHHhccchhHHHHHHHHHHHhh
Q 030728 49 KEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDS 105 (172)
Q Consensus 49 KEEEIErkKmEVrekV~aqLGRvEeet---krLa~IreELE~~aDP~RKEV~~vRKkID~ 105 (172)
+|-++-+-...++.||..|+.+-..|- ..|..|++||-...|.- .||+.+|+||+.
T Consensus 203 ~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~ 261 (782)
T COG0466 203 KEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEK 261 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhh
Confidence 344444566778999999998766653 45788899997776655 999999999984
No 61
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.32 E-value=1.5e+02 Score=21.66 Aligned_cols=72 Identities=31% Similarity=0.458 Sum_probs=42.8
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccch-hHHHH-------HHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhh
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADP-MRKEV-------AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNE 133 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP-~RKEV-------~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNE 133 (172)
+.+++++..+.....++....+.|+.+... .-.++ ..++-+|...|+-+=|+|-.+- =|+...+|.+.|+.
T Consensus 16 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~-vE~~~~eA~~~l~~ 94 (129)
T cd00584 16 EELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY-VEKDLEEAIEFLDK 94 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE-EEecHHHHHHHHHH
Confidence 356778888888888888888888887541 11111 1123344455666666665443 25566677766655
Q ss_pred h
Q 030728 134 K 134 (172)
Q Consensus 134 K 134 (172)
+
T Consensus 95 r 95 (129)
T cd00584 95 K 95 (129)
T ss_pred H
Confidence 4
No 62
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=38.82 E-value=35 Score=27.34 Aligned_cols=37 Identities=43% Similarity=0.702 Sum_probs=29.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhhhh
Q 030728 126 EALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSI 170 (172)
Q Consensus 126 eaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~i~sl 170 (172)
+|.|+-|.-.-|||.|||...||- .-|+.||.-+|+.
T Consensus 46 ~a~e~~~d~~EEKaRlItQVLELQ--------nTLdDLSqRVdsV 82 (120)
T KOG3650|consen 46 DAVEAENDVEEEKARLITQVLELQ--------NTLDDLSQRVDSV 82 (120)
T ss_pred cccccccChHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 577888888899999999999985 4577777777764
No 63
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.43 E-value=80 Score=28.74 Aligned_cols=69 Identities=30% Similarity=0.470 Sum_probs=51.5
Q ss_pred Hhccchh-HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHH-HHhhHHHHHH
Q 030728 86 EALADPM-RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESE-KLRMKKLEEL 163 (172)
Q Consensus 86 E~~aDP~-RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESE-rlRmkKLEEL 163 (172)
+.+-||+ +|||. |||||-. .--||+-++--+|-+||.+--+=+.+|..|...+..++ .-+++..++.
T Consensus 58 q~fED~~vekEv~-iRrri~~----------~~nk~~eeF~~~LaeyndylEe~Ediv~nl~~~~dv~~t~~k~~~ye~~ 126 (300)
T KOG3800|consen 58 QTFEDPTVEKEVD-IRRRILR----------IFNKKEEEFTGSLAEYNDYLEEVEDIVFNLGNNIDVTETKEKVKTYEEP 126 (300)
T ss_pred hhcchhHHHHHHH-HHHHHHH----------HhccchhhhhhhHHHHhcccHHHHHHHHHhhcccchhHHHHHHHHhhcc
Confidence 3578887 67886 5666632 34578999999999999999999999999988776655 3455666655
Q ss_pred HH
Q 030728 164 SK 165 (172)
Q Consensus 164 sK 165 (172)
++
T Consensus 127 nk 128 (300)
T KOG3800|consen 127 NK 128 (300)
T ss_pred Cc
Confidence 54
No 64
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=38.14 E-value=72 Score=27.64 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
++|++++..+. .|.=..|++||+.||-.-..+|+..|+.|=.+=|+|
T Consensus 277 ~~~~~il~nmS-----~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~~r~l 323 (339)
T PRK05686 277 ELREKFLSNMS-----KRAAEMLREDLEALGPVRLSDVEEAQKKIVQIARRL 323 (339)
T ss_pred HHHHHHHHhcC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 47888887774 244457899999999999999999999997776665
No 65
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=38.05 E-value=22 Score=30.82 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=27.5
Q ss_pred HHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (172)
Q Consensus 84 ELE~~aDP~RKEV~~vRKkID~vNreLKPLg 114 (172)
=|+.|.=|||.||..|-|+|..+=|+++-|.
T Consensus 262 ~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 262 YLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999887663
No 66
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=38.04 E-value=2.5e+02 Score=23.72 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHH------HHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHH-------HHHhhhhhccccc
Q 030728 47 RAKEEEIEKKKLEVRE------KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR-------KKIDSVNKELKPL 113 (172)
Q Consensus 47 ~aKEEEIErkKmEVre------kV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vR-------KkID~vNreLKPL 113 (172)
+.-+++..+...++++ ....++.+++++..+|..-+.+++.+..-++.+..+-- .+|+.+..++.-|
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l 94 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARL 94 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544 34678889999999999999988887776666554433 3677777777666
Q ss_pred hhhHHhhHHHH
Q 030728 114 GHTCQKKEREY 124 (172)
Q Consensus 114 g~tcqKKEkEY 124 (172)
-..-++|+.|-
T Consensus 95 ~ee~~~ke~Ea 105 (246)
T PF00769_consen 95 EEESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.69 E-value=2.1e+02 Score=22.80 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=44.7
Q ss_pred HHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 030728 66 AHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKL 145 (172)
Q Consensus 66 aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~L 145 (172)
..-+++..-+..++..+.++..+. -++..-.|-|+.+|-|+-.|-- +|..+-+.+..-..|=..||.++
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~----~~l~ek~k~~e~l~DE~~~L~l-------~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLE----EELKEKNKANEILQDELQALQL-------QLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333 3566667777777777766553 44555555666667778999999
Q ss_pred HHHhhh
Q 030728 146 MELVGE 151 (172)
Q Consensus 146 mELv~E 151 (172)
|..++.
T Consensus 182 m~~k~~ 187 (194)
T PF08614_consen 182 MQRKAQ 187 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987753
No 68
>PRK11637 AmiB activator; Provisional
Probab=37.51 E-value=2.9e+02 Score=24.40 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHH
Q 030728 92 MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (172)
Q Consensus 92 ~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaL 128 (172)
...++..+.++|+.++.+|.-+-..-......|+.-+
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444433
No 69
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.35 E-value=3.5e+02 Score=25.39 Aligned_cols=48 Identities=27% Similarity=0.420 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhh
Q 030728 58 LEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK 108 (172)
Q Consensus 58 mEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNr 108 (172)
|+=--..|+-|.|-+|| |+..-++|+.+---.-.++..+-+-||.+|+
T Consensus 227 me~~~aeq~slkRt~Ee---L~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEE---LNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHhhHHH---HHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33334556677777776 3445555555555566788888888888875
No 70
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=36.91 E-value=2.5e+02 Score=23.54 Aligned_cols=83 Identities=27% Similarity=0.344 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhh----HHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchh-hHHhhHHHHHHHHHHh
Q 030728 57 KLEVREKVQAHLGRV----EEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH-TCQKKEREYKEALEAF 131 (172)
Q Consensus 57 KmEVrekV~aqLGRv----EeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~-tcqKKEkEYKeaLEAf 131 (172)
-|+.-+.|..+||++ +--.|-++.|+++||.|- +.+.+|-+-...|-+++-|++. +-|--+-+..+.-+--
T Consensus 49 imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe----~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV 124 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLE----ENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQV 124 (157)
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHH
Confidence 366678889999965 556799999999999874 6788888888999999999874 3333333444444444
Q ss_pred hhhhHHHHHHHH
Q 030728 132 NEKNKEKVQLIT 143 (172)
Q Consensus 132 NEKnkEKa~LV~ 143 (172)
|+---.+++...
T Consensus 125 ~el~~i~emv~~ 136 (157)
T COG3352 125 NELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHhc
Confidence 444444444333
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.51 E-value=3e+02 Score=24.32 Aligned_cols=91 Identities=12% Similarity=0.256 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHH---HHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHH
Q 030728 50 EEEIEKKKLEVREKVQ---AHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKE 126 (172)
Q Consensus 50 EEEIErkKmEVrekV~---aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKe 126 (172)
-.+|+...-++.+.+. ....+..+-.+++..++..+...- ..+..+.+++..+..++.-|...-...+.++++
T Consensus 308 i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~----~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 308 LKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 3334444444433333 344444455555555555554432 224444444444444454454445556666777
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 030728 127 ALEAFNEKNKEKVQLITK 144 (172)
Q Consensus 127 aLEAfNEKnkEKa~LV~~ 144 (172)
..+-+++-+.+++.+...
T Consensus 384 l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 384 LQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766666665544
No 72
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.41 E-value=4.7e+02 Score=26.51 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhhh
Q 030728 94 KEVAVVRKKIDSV 106 (172)
Q Consensus 94 KEV~~vRKkID~v 106 (172)
++++.++.+++.+
T Consensus 828 ~ei~~l~~~~~~~ 840 (1163)
T COG1196 828 QEIEELEEEIEEL 840 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 73
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=36.37 E-value=73 Score=22.14 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHHhhHHHHHHH
Q 030728 55 KKKLEVREKVQAHLG-------RVEEETKRLATIREE 84 (172)
Q Consensus 55 rkKmEVrekV~aqLG-------RvEeetkrLa~IreE 84 (172)
+..|||-.+++.||. |+|+..|.|..|.+.
T Consensus 9 r~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek 45 (51)
T PF14379_consen 9 RMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEK 45 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999999988 888888888888763
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.83 E-value=4e+02 Score=25.22 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhccccchhhHHhhHHHHHHH
Q 030728 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEA 127 (172)
Q Consensus 94 KEV~~vRKkID~vNreLKPLg~tcqKKEkEYKea 127 (172)
+++..+.+.|+.+-.+|+-...+-.+.++...++
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3444444455555555544444444444444433
No 75
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.72 E-value=3e+02 Score=25.37 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHhccc
Q 030728 60 VREKVQAHLGRVEEETKRLATIREELEALAD 90 (172)
Q Consensus 60 VrekV~aqLGRvEeetkrLa~IreELE~~aD 90 (172)
+..-+...+..++-.-.+|..|.+.|..+-+
T Consensus 285 ~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 285 ATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555554444433
No 76
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.63 E-value=2.3e+02 Score=28.06 Aligned_cols=78 Identities=35% Similarity=0.522 Sum_probs=51.2
Q ss_pred HHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchh
Q 030728 36 EEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (172)
Q Consensus 36 ee~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~ 115 (172)
..+-..|++.-++.|.+|.--|-|++--+ -|-.+||+-|| |-+++=|| |+-+-|
T Consensus 509 q~llkva~dnar~qekQiq~Ek~ELkmd~-----------lrerelresle-------kql~~Erk--------lR~~~q 562 (641)
T KOG3915|consen 509 QGLLKVAIDNARAQEKQIQLEKTELKMDF-----------LRERELRESLE-------KQLAMERK--------LRAIVQ 562 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-------HHHHHHHH--------HHHHHH
Confidence 56778899999999999988887776432 24456676666 33443333 333444
Q ss_pred hHHhhHHHH----HHHHHHhhhhhHHHHH
Q 030728 116 TCQKKEREY----KEALEAFNEKNKEKVQ 140 (172)
Q Consensus 116 tcqKKEkEY----KeaLEAfNEKnkEKa~ 140 (172)
.-.||||.| ++||+ |+-|-+|+|.
T Consensus 563 kr~kkEkk~k~k~qe~L~-~~sk~reqae 590 (641)
T KOG3915|consen 563 KRLKKEKKAKRKLQEALE-FESKRREQAE 590 (641)
T ss_pred HHHHHHHHHHHHHHHHhh-hccccchhhh
Confidence 455667654 57776 6778888874
No 77
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=33.04 E-value=1.6e+02 Score=21.51 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=18.2
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhcc
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALA 89 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~a 89 (172)
+.++++++.+......+....+.|+.+.
T Consensus 16 ~~l~~~i~~l~~~i~e~~~~~~~L~~l~ 43 (126)
T TIGR00293 16 ESLQAQIAALRALIAELETAIETLEDLK 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566667777766666666666666664
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.75 E-value=6.8e+02 Score=27.21 Aligned_cols=122 Identities=26% Similarity=0.370 Sum_probs=62.7
Q ss_pred chHHhhHHHHhhhhhhHHH-------HHHHHHHHHHHHHH---HhhhhHHHHhhHHHHHH-------HHHhccchhHHHH
Q 030728 34 DDEEMSRSALTTFRAKEEE-------IEKKKLEVREKVQA---HLGRVEEETKRLATIRE-------ELEALADPMRKEV 96 (172)
Q Consensus 34 e~ee~srsals~F~aKEEE-------IErkKmEVrekV~a---qLGRvEeetkrLa~Ire-------ELE~~aDP~RKEV 96 (172)
++.+-...||+.-.-.-++ .+-.--+.|+++.. +|-+++-+++|++..-+ ++|...++..-++
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~ 857 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK 857 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH
Confidence 3445566677654333222 33344455555543 45667777888887444 3344433332222
Q ss_pred HHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhhh
Q 030728 97 AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK--EKVQLITKLMELVGESEKLRMKKLEELSKSIDS 169 (172)
Q Consensus 97 ~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnk--EKa~LV~~LmELv~ESErlRmkKLEELsK~i~s 169 (172)
+.|+-+-.....-++||.++- ++..| ...+|-++++++-++.=+.---|++.++.-|+-
T Consensus 858 -----------~~l~~~~~~ie~l~kE~e~~q---e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~ 918 (1293)
T KOG0996|consen 858 -----------KRLKELEEQIEELKKEVEELQ---EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDK 918 (1293)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHH
Confidence 223333333334445554443 23333 334566777777777666555566666665553
No 79
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=32.51 E-value=1.5e+02 Score=27.76 Aligned_cols=49 Identities=31% Similarity=0.331 Sum_probs=33.6
Q ss_pred hhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HhhhHHHHhhH
Q 030728 105 SVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME-------LVGESEKLRMK 158 (172)
Q Consensus 105 ~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmE-------Lv~ESErlRmk 158 (172)
.||+|||.|----.--+-.| .||--..+|.||+-++-+ +-.++||||..
T Consensus 158 ~vNsELK~LlVASvgddLQ~-----~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~erl~iq 213 (383)
T KOG4074|consen 158 KVNSELKRLLVASVGDDLQG-----QVEALTEDKVQLAHRVDEYMGNLMVEDEQSERLRIQ 213 (383)
T ss_pred HHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhH
Confidence 58999998754444434334 366677899999876655 44578888864
No 80
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.42 E-value=2.8e+02 Score=22.75 Aligned_cols=103 Identities=27% Similarity=0.336 Sum_probs=58.4
Q ss_pred hHHhhHHHHhhhhhhHHHHHHH--HHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcccc
Q 030728 35 DEEMSRSALTTFRAKEEEIEKK--KLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKP 112 (172)
Q Consensus 35 ~ee~srsals~F~aKEEEIErk--KmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKP 112 (172)
|.+-|+.||..-.|--+-..-+ ..++=.+ -|- .. ...=-.-|+.+-.-+.+++..+|+.||.||+.=|-
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~----~g~--na---W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSK----YGE--NA---WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888777665442221 1222111 111 11 11112578888889999999999999999986543
Q ss_pred chhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHh
Q 030728 113 LGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLR 156 (172)
Q Consensus 113 Lg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlR 156 (172)
-=..+..+ ++.=...=..+|++-.++-..-..|+
T Consensus 169 ~Q~~~~~~----------L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 169 RQEEAGEE----------LRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 22222333456666666666655555
No 81
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=32.11 E-value=1.6e+02 Score=24.16 Aligned_cols=44 Identities=36% Similarity=0.434 Sum_probs=36.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHH
Q 030728 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIRE 83 (172)
Q Consensus 40 rsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~Ire 83 (172)
..+++-++.++++.-+++-+.-.-+...--.||++-+++|.=|.
T Consensus 61 ~~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr~ 104 (149)
T PF15346_consen 61 EEALEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEERL 104 (149)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999888888888888888888888876543
No 82
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=32.03 E-value=29 Score=25.47 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhccccc
Q 030728 94 KEVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 94 KEV~~vRKkID~vNreLKPL 113 (172)
.++..+|+.||.++++|=-|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46778999999999998544
No 83
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=31.25 E-value=36 Score=24.88 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHhhhhhccccc
Q 030728 90 DPMRKEVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 90 DP~RKEV~~vRKkID~vNreLKPL 113 (172)
.++.-++..+|..||.++++|=.|
T Consensus 4 ~~~~~~L~~lR~~Id~iD~~ll~L 27 (101)
T COG1605 4 TIMMEELEELREEIDEIDRELLDL 27 (101)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999988655
No 84
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.20 E-value=3.4e+02 Score=23.28 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=63.5
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHH---HHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHH
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRK---KIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK 138 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRK---kID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEK 138 (172)
-|+++.+--+|+.+.+|+. |++.+ |+..-+..+ +-++|+.+|.-|-.+|-.=|-+|.-.+..--.-++|.
T Consensus 25 ~kL~~~ve~~ee~na~L~~---e~~~L----~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAE---EITDL----RKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888999988874 44433 333334433 3467799999999999999999999888777788999
Q ss_pred HHHHHHHHHHhhhHHH
Q 030728 139 VQLITKLMELVGESEK 154 (172)
Q Consensus 139 a~LV~~LmELv~ESEr 154 (172)
-+||..+-.|=-|..+
T Consensus 98 q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 98 QSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999887665544443
No 85
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=30.18 E-value=2.1e+02 Score=24.25 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhhhccccchh------------------hHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 030728 93 RKEVAVVRKKIDSVNKELKPLGH------------------TCQKKEREYKEALEAFNEKNKEKVQLITKLMELVG 150 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPLg~------------------tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ 150 (172)
...|..+.+.||..|.++.||-. -|-+-||..=.+.+.++...-- ...+|+|-.|+=
T Consensus 87 ~e~v~~LE~~id~y~~~l~~l~~FiLPGgs~~aA~lh~ARtv~RRAER~~V~l~~~~~~~~~~-l~YlNRLSdlLF 161 (184)
T COG2096 87 EEDVKRLEKRIDAYNAELPPLKSFVLPGGSPAAAALHVARTVARRAERRLVALSREEEANLVV-LKYLNRLSDLLF 161 (184)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHHH
Confidence 57899999999999999998742 3678899988888888877665 788899888753
No 86
>PRK10203 hypothetical protein; Provisional
Probab=29.83 E-value=1.2e+02 Score=24.03 Aligned_cols=61 Identities=13% Similarity=0.267 Sum_probs=34.7
Q ss_pred HhhhhHHH---HhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHH
Q 030728 67 HLGRVEEE---TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (172)
Q Consensus 67 qLGRvEee---tkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaL 128 (172)
.-|-+=++ -|-+..+++.|..++|+.- +...++|++-..|--+..++-.+.-.-.+|.+-+
T Consensus 52 nag~lP~el~LrKE~~~l~~~l~~~~d~~~-~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki 115 (122)
T PRK10203 52 NAGCLPPELEQRREAIQLLDLLKGIREDDP-QYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKL 115 (122)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 33444433 3456777888888887732 2234566666666555555555544445666543
No 87
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.80 E-value=1.8e+02 Score=19.79 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=16.7
Q ss_pred ccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030728 111 KPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEL 148 (172)
Q Consensus 111 KPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmEL 148 (172)
..|..-|..+.....+-+..++..-..=..++...-.+
T Consensus 64 ~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 64 EDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444433333333333333
No 88
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=29.72 E-value=3.2e+02 Score=22.47 Aligned_cols=117 Identities=24% Similarity=0.452 Sum_probs=75.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHh-hhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHH
Q 030728 44 TTFRAKEEEIEKKKLEVREKVQAHL-GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKER 122 (172)
Q Consensus 44 s~F~aKEEEIErkKmEVrekV~aqL-GRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEk 122 (172)
..+++--..++..-..+.++|++++ ++++.-..+|..+-..+..+.+-++.|....+..|+..+..|. +
T Consensus 59 E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~----------~ 128 (247)
T PF06705_consen 59 ESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELV----------R 128 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------H
Confidence 3444444455555566667776654 4667777888888889999999999999999999988777664 3
Q ss_pred HHHHHHHHhhhhhHHHHH----HHHH-------HHHHhhhHHHHhhHHHHHHHHhhhhh
Q 030728 123 EYKEALEAFNEKNKEKVQ----LITK-------LMELVGESEKLRMKKLEELSKSIDSI 170 (172)
Q Consensus 123 EYKeaLEAfNEKnkEKa~----LV~~-------LmELv~ESErlRmkKLEELsK~i~sl 170 (172)
+.-++-++|+.-.....+ ++.+ |-+-+...-..|..++.+|...|+.+
T Consensus 129 ~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~ 187 (247)
T PF06705_consen 129 ELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEV 187 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555544444432 2222 33334444556777887777777654
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.29 E-value=3.4e+02 Score=26.23 Aligned_cols=86 Identities=20% Similarity=0.392 Sum_probs=64.2
Q ss_pred hHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHh--------------hhhhccccchhhHHhhHHHHHHHHHHhhhh--
Q 030728 71 VEEETKRLATIREELEALADPMRKEVAVVRKKID--------------SVNKELKPLGHTCQKKEREYKEALEAFNEK-- 134 (172)
Q Consensus 71 vEeetkrLa~IreELE~~aDP~RKEV~~vRKkID--------------~vNreLKPLg~tcqKKEkEYKeaLEAfNEK-- 134 (172)
++.-..||..+-.+.|..-.|+=.|+...|...+ .+-.+++-+..-|+.||..|+.-...|-.-
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556677888888888888899999998885443 555677778888999999888755544322
Q ss_pred hHHHHHHHHHHHHHhhhHHHHh
Q 030728 135 NKEKVQLITKLMELVGESEKLR 156 (172)
Q Consensus 135 nkEKa~LV~~LmELv~ESErlR 156 (172)
..-....+.+++|+|+-..+++
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~KQk 504 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRKQK 504 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHHHH
Confidence 2345678899999999888776
No 90
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=29.27 E-value=1.2e+02 Score=26.44 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
++|++|..-+. .|.=..||+|++.||-.-..+|+..|+.|=.+=|+|
T Consensus 271 e~r~~il~nmS-----~Raa~~l~eele~~gpV~~sdvE~Aq~~Iv~~~r~L 317 (334)
T PRK07194 271 ALRQAILRVMP-----KRQAQALEAQIERLGPVPLSRVEQARKEIMALVREL 317 (334)
T ss_pred HHHHHHHHHcc-----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 46666666553 233346899999999999999999999997766655
No 91
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=29.09 E-value=1.6e+02 Score=19.28 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=27.7
Q ss_pred hhccccchhhHHhhHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhHH
Q 030728 107 NKELKPLGHTCQKKEREYKEALEAFNEKNK-EKVQLITKLMELVGESE 153 (172)
Q Consensus 107 NreLKPLg~tcqKKEkEYKeaLEAfNEKnk-EKa~LV~~LmELv~ESE 153 (172)
....+.+...--.+-++|.+.+++--+.|- .|-.||..+-.|+....
T Consensus 4 w~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 4 WKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 333444444444455555555555555553 46788999888877654
No 92
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.85 E-value=4e+02 Score=28.44 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred chhhhhhccCCCccccCCCCCCcchHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccc
Q 030728 11 NLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALAD 90 (172)
Q Consensus 11 ~~~~~~~~~~sg~~~~~~s~~~~e~ee~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aD 90 (172)
|.++||+++++| +.|++.+=..-+.-=-.|...=.+|..++++|+. |..++...| .||+-.+-+|+.+-+
T Consensus 635 ~ksGlmsGG~s~------~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~-v~~~i~~le---~~~~~~~~~~~~~k~ 704 (1141)
T KOG0018|consen 635 HKSGLMSGGSSG------AKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSS-VESKIHGLE---MRLKYSKLDLEQLKR 704 (1141)
T ss_pred eccceecCCccC------CCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHhhhhhccccchhhHHhh
Q 030728 91 PMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120 (172)
Q Consensus 91 P~RKEV~~vRKkID~vNreLKPLg~tcqKK 120 (172)
-.-..--.++.-.+-.+ ++.|=-..|+++
T Consensus 705 ~l~~~~~El~~~~~~i~-~~~p~i~~i~r~ 733 (1141)
T KOG0018|consen 705 SLEQNELELQRTESEID-EFGPEISEIKRK 733 (1141)
T ss_pred HHHHHHHHHHHHHHHHH-hhCchHHHHHHH
No 93
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=28.52 E-value=1.5e+02 Score=26.21 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHh----------hhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 030728 92 MRKEVAVVRKKID----------SVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLM 146 (172)
Q Consensus 92 ~RKEV~~vRKkID----------~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~Lm 146 (172)
...|++..++.+. .|-...++....+.+++.++++-+.+|-.++-++++...++|
T Consensus 263 ~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a~el~~~l 327 (332)
T PF00456_consen 263 TEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEAQELERRL 327 (332)
T ss_dssp HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 4456777777654 333344556666889999999999999999999999988775
No 94
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.13 E-value=2.1e+02 Score=19.85 Aligned_cols=71 Identities=15% Similarity=0.388 Sum_probs=43.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHH---hc-cchhHHHHHHHHHHHhhhhhccc
Q 030728 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELE---AL-ADPMRKEVAVVRKKIDSVNKELK 111 (172)
Q Consensus 41 sals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE---~~-aDP~RKEV~~vRKkID~vNreLK 111 (172)
.-+++|...=+.+...=-+++..=..-+..++.+...|..+.+-.. .| -+|-..=+..+||++..+|.-+.
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~ 81 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQ 81 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544444444445554444446788888888888877322 22 34566667788888888776554
No 95
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.98 E-value=2.2e+02 Score=20.18 Aligned_cols=103 Identities=19% Similarity=0.327 Sum_probs=53.0
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccchhHH--------HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhh
Q 030728 63 KVQAHLGRVEEETKRLATIREELEALADPMRK--------EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~IreELE~~aDP~RK--------EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEK 134 (172)
.+++++..+......+....++|+.+.|-.-. .=..+.-+|..-++=+.++|-.|-= |+-+.+|.+-++.+
T Consensus 17 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v-e~~~~eA~~~l~~r 95 (129)
T cd00890 17 ALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV-EKSLEEAIEFLKKR 95 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE-EecHHHHHHHHHHH
Confidence 45566667777777777777777777532110 0011222233456667788844432 35556666655432
Q ss_pred hHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhhhh
Q 030728 135 NKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSI 170 (172)
Q Consensus 135 nkEKa~LV~~LmELv~ESErlRmkKLEELsK~i~sl 170 (172)
...+.+-++-+..+-.---+.+.++...+..+
T Consensus 96 ----~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 96 ----LETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344444444443333344555555555544
No 96
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=27.07 E-value=90 Score=26.69 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhhhhhcccc
Q 030728 92 MRKEVAVVRKKIDSVNKELKP 112 (172)
Q Consensus 92 ~RKEV~~vRKkID~vNreLKP 112 (172)
+.+|+..+|-+|+++|.++-.
T Consensus 110 ~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 110 IKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666666665543
No 97
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.85 E-value=4.9e+02 Score=23.69 Aligned_cols=29 Identities=41% Similarity=0.523 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhH
Q 030728 124 YKEALEAFNEKNKEKVQLITKLMELVGES 152 (172)
Q Consensus 124 YKeaLEAfNEKnkEKa~LV~~LmELv~ES 152 (172)
|-++-+.|.|--+||..|+..|-+|-++-
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554443
No 98
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.85 E-value=2.6e+02 Score=24.12 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 030728 48 AKEEEIEKKKLEVREKVQAH 67 (172)
Q Consensus 48 aKEEEIErkKmEVrekV~aq 67 (172)
.||+=|.|-++.=-+|+.+.
T Consensus 17 skeel~~rLR~~E~ek~~~m 36 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLM 36 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45666666555555544443
No 99
>PRK06285 chorismate mutase; Provisional
Probab=26.37 E-value=36 Score=24.63 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhccccc
Q 030728 93 RKEVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPL 113 (172)
.+.++.+|+.||.++++|-.|
T Consensus 6 ~~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777899999999988655
No 100
>PRK07248 hypothetical protein; Provisional
Probab=25.99 E-value=32 Score=24.16 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhccccchh---hHHhhHHHHHHH
Q 030728 96 VAVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (172)
Q Consensus 96 V~~vRKkID~vNreLKPLg~---tcqKKEkEYKea 127 (172)
++.+|+.||.++++|-.|=. .|..+=-.||.+
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKA 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999876532 344444555554
No 101
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=25.92 E-value=33 Score=24.05 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhhccccc
Q 030728 95 EVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPL 113 (172)
|+..+|..||.++++|--|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998654
No 102
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.89 E-value=1.5e+02 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHhccc
Q 030728 64 VQAHLGRVEEETKRLATIREELEALAD 90 (172)
Q Consensus 64 V~aqLGRvEeetkrLa~IreELE~~aD 90 (172)
+..+.-.++.+-+.+.-..+||+.|.|
T Consensus 26 ~~~q~~~le~q~~e~~~~~~EL~~L~~ 52 (121)
T PRK09343 26 LLQQKSQIDLELREINKALEELEKLPD 52 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344445555555566666777777765
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.64 E-value=6.4e+02 Score=24.65 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=21.8
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHhccchhHHHH-------HHHHHHHhhhhhccccchh
Q 030728 65 QAHLGRVEEETKRLATIREELEALADPMRKEV-------AVVRKKIDSVNKELKPLGH 115 (172)
Q Consensus 65 ~aqLGRvEeetkrLa~IreELE~~aDP~RKEV-------~~vRKkID~vNreLKPLg~ 115 (172)
++.|...+++...|....+++..-..-+.+|. +..+.||..+.-+++-|.+
T Consensus 177 ~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 177 EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333 3344455444444444433
No 104
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=25.42 E-value=4.1e+02 Score=22.34 Aligned_cols=57 Identities=9% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHHhhHHHHHHHHHhccchh--HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhH
Q 030728 72 EEETKRLATIREELEALADPM--RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136 (172)
Q Consensus 72 EeetkrLa~IreELE~~aDP~--RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnk 136 (172)
|.+.+.....++.+.. +||+ -||+.-++-|++... ++-++-+.+|..+++.+|+-+.
T Consensus 131 e~~Cke~~~a~~~~~~-~~~~~~~ke~~K~~~Kl~K~~-------~~~~k~~~~Y~~~v~~l~~~~~ 189 (240)
T cd07672 131 EQKCRDKDEAEQAVNR-NANLVNVKQQEKLFAKLAQSK-------QNAEDADRLYMQNISVLDKIRE 189 (240)
T ss_pred HHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444443 4554 678777777766554 4567788999999999887643
No 105
>COG2739 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.98 E-value=2.9e+02 Score=21.89 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=29.7
Q ss_pred hHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhH
Q 030728 116 TCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGES 152 (172)
Q Consensus 116 tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ES 152 (172)
.|.+.=-.|.+.|.-| +|.+.+-+|+.+|++.++-+
T Consensus 56 r~~~~L~~YE~KL~l~-~k~~~R~el~d~lk~~~~~~ 91 (105)
T COG2739 56 RTEKILEDYEEKLKLY-EKYKIRKELYDKLKELITDP 91 (105)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCH
Confidence 3555556799999888 57778999999999999988
No 106
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=24.70 E-value=34 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhccccch-hh--HHhhHHHHHHH
Q 030728 97 AVVRKKIDSVNKELKPLG-HT--CQKKEREYKEA 127 (172)
Q Consensus 97 ~~vRKkID~vNreLKPLg-~t--cqKKEkEYKea 127 (172)
..+|..||.++++|=.|= +- ..++=-+||.+
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999986653 22 23344555554
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.35 E-value=7e+02 Score=24.65 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhHHHHH-HHHHHHH---HhhhHHHHhhHHHHHHHHhhhhh
Q 030728 123 EYKEALEAFNEKNKEKVQ-LITKLME---LVGESEKLRMKKLEELSKSIDSI 170 (172)
Q Consensus 123 EYKeaLEAfNEKnkEKa~-LV~~LmE---Lv~ESErlRmkKLEELsK~i~sl 170 (172)
.|++|.+....=.+ +++ +...+.. .++++||.=++.|+.++..+..|
T Consensus 601 R~e~a~d~Qe~L~~-R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 601 RYEEAKDKQEKLMK-RVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777666543322 233 3333333 47788888778888777766554
No 108
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=24.09 E-value=42 Score=23.47 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhccccc
Q 030728 97 AVVRKKIDSVNKELKPL 113 (172)
Q Consensus 97 ~~vRKkID~vNreLKPL 113 (172)
+.+|++||.++++|=-|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 2 ADIREAIDRIDLALVQA 18 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999998544
No 109
>PHA02109 hypothetical protein
Probab=23.82 E-value=1.5e+02 Score=26.05 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=38.9
Q ss_pred HHhhHHHHH-----HHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHH
Q 030728 74 ETKRLATIR-----EELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (172)
Q Consensus 74 etkrLa~Ir-----eELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaL 128 (172)
-|.|+++.+ +-||||+|.. +++..+--|||.+-+|+--+..--|.+-.+.+.-|
T Consensus 169 sTE~ID~~~~~~t~~~L~~~~~~L-~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~L 227 (233)
T PHA02109 169 STERIDQVERSHTGENLEGLTDKL-KQISELTIKLEALSDEACQVKHKILNLRAEVKRRL 227 (233)
T ss_pred cHHHHHHHHhccchhhhhhhhHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677666 4799999976 78999999999999998555555555554544433
No 110
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.81 E-value=1e+02 Score=21.91 Aligned_cols=53 Identities=28% Similarity=0.434 Sum_probs=26.1
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccc-hhHHHH-------HHHHHHHhhhhhccccchh
Q 030728 63 KVQAHLGRVEEETKRLATIREELEALAD-PMRKEV-------AVVRKKIDSVNKELKPLGH 115 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~IreELE~~aD-P~RKEV-------~~vRKkID~vNreLKPLg~ 115 (172)
.+++++..++..-..+...++-|+.|.+ +.-.++ ..|+=+|...|+=+=+||-
T Consensus 7 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~ 67 (120)
T PF02996_consen 7 NLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGA 67 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeC
Confidence 3455555555555566666666666655 222211 2344445555555555553
No 111
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=23.40 E-value=3.1e+02 Score=20.27 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=59.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhh---hHHHHhhH---HHHHHHHHhccchhHHHHHHHHHHH-----hhhhhccccc
Q 030728 45 TFRAKEEEIEKKKLEVREKVQAHLGR---VEEETKRL---ATIREELEALADPMRKEVAVVRKKI-----DSVNKELKPL 113 (172)
Q Consensus 45 ~F~aKEEEIErkKmEVrekV~aqLGR---vEeetkrL---a~IreELE~~aDP~RKEV~~vRKkI-----D~vNreLKPL 113 (172)
.....|++|.+...++...+-..+.+ .....+++ -.|--.||.+||=...=+..+.+.. +.+-++|..+
T Consensus 42 ~i~~~e~~id~l~~~i~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~lErigD~~~~ia~~~~~~~~~~~~~~~~~el~~m 121 (212)
T TIGR02135 42 KVIEDDDQINALEVKIEEKCLRLIALQQPVAKDLRLIISIIKISSDLERIGDYAVNIAKRALRLKEEDAKPKHLEELEKM 121 (212)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHH
Confidence 45567788888888887765555443 22333333 3555799999998666333333322 4555777777
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHH
Q 030728 114 GHTCQKKEREYKEALEAFNEKNKEKVQ 140 (172)
Q Consensus 114 g~tcqKKEkEYKeaLEAfNEKnkEKa~ 140 (172)
+..|.+ -+..|.+||...+...+.
T Consensus 122 ~~~v~~---~l~~a~~al~~~d~~~~~ 145 (212)
T TIGR02135 122 GKLALK---MLKDALDAFLNKDAELAR 145 (212)
T ss_pred HHHHHH---HHHHHHHHHHhCCHHHHH
Confidence 777765 677788888776665554
No 112
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=23.09 E-value=1e+03 Score=26.05 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=54.9
Q ss_pred hhHHHHhhHHHHHHHHHhccchhH--------HHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhh-------
Q 030728 70 RVEEETKRLATIREELEALADPMR--------KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK------- 134 (172)
Q Consensus 70 RvEeetkrLa~IreELE~~aDP~R--------KEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEK------- 134 (172)
..|+..|-|.++.+.|..-.+-.. .+...+--+....+.+++-|.--.+.++++.+.| ..+|..
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEK 540 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 455555555555555543333333 2223333344444445555555556667777766 555544
Q ss_pred -hHHHHHHHHHHHHHhhhHHH--HhhHHHHHHHHhhhhh
Q 030728 135 -NKEKVQLITKLMELVGESEK--LRMKKLEELSKSIDSI 170 (172)
Q Consensus 135 -nkEKa~LV~~LmELv~ESEr--lRmkKLEELsK~i~sl 170 (172)
+...++|....-++++|++. -+-+...++++.|.++
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~ 579 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQE 579 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHH
Confidence 35667777777778877762 2334456777776653
No 113
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=22.95 E-value=50 Score=29.67 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhhhhccc
Q 030728 92 MRKEVAVVRKKIDSVNKELK 111 (172)
Q Consensus 92 ~RKEV~~vRKkID~vNreLK 111 (172)
+.++++.+|+.||.++++|=
T Consensus 3 ~~~~L~~lR~~ID~ID~~ii 22 (386)
T PRK10622 3 SENPLLALREKISALDEKLL 22 (386)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 45677778888888887764
No 114
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=22.75 E-value=4.5e+02 Score=21.90 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHH
Q 030728 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLE 161 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLE 161 (172)
.+++.-++.|+. -..+.+.+-+.+|..+|..+|.-+..=-+-+....+.+-+=|.-|+.-|-
T Consensus 167 ~~eleK~~~k~~-------k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk 228 (258)
T cd07655 167 PDQVKKLQDKVE-------KCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFK 228 (258)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555544 45677888999999999999988853333344444444444445544443
No 115
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=22.62 E-value=50 Score=31.02 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=29.6
Q ss_pred hccch-----hHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHH
Q 030728 87 ALADP-----MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEA 127 (172)
Q Consensus 87 ~~aDP-----~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKea 127 (172)
.|+|| +|-||..||.+=|-+-.-=+-|-..|.-.|.|.|..
T Consensus 293 SmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai 338 (394)
T KOG0225|consen 293 SMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAI 338 (394)
T ss_pred ccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHH
Confidence 58999 799999999776655544444555667778887753
No 116
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.53 E-value=5.6e+02 Score=22.92 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030728 118 QKKEREYKEALEAFNEKNKEKVQLITKLMEL 148 (172)
Q Consensus 118 qKKEkEYKeaLEAfNEKnkEKa~LV~~LmEL 148 (172)
.++...|+.....|+....+-.+|-..+.+|
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555555555554444
No 117
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.48 E-value=1e+03 Score=25.78 Aligned_cols=109 Identities=25% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHH--------HHHHHHHH------Hhhhhhc--------------cccc
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPMRK--------EVAVVRKK------IDSVNKE--------------LKPL 113 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RK--------EV~~vRKk------ID~vNre--------------LKPL 113 (172)
+.+-.+|..|++++.+|..=--||+...--+|. +-.++.|| |+.++.+ |.-+
T Consensus 254 ~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~ 333 (1200)
T KOG0964|consen 254 EQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKV 333 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHH
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-------------------hHHHHhhHHHHHHHHhhhhh
Q 030728 114 GHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVG-------------------ESEKLRMKKLEELSKSIDSI 170 (172)
Q Consensus 114 g~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~-------------------ESErlRmkKLEELsK~i~sl 170 (172)
+.--+.++.|..+++--||.--.+-..+..+|+.|-. |-+.-=.+-++.|+..|.+.
T Consensus 334 ~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ 409 (1200)
T KOG0964|consen 334 KDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDT 409 (1200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhh
No 118
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=22.47 E-value=32 Score=23.99 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhhccccchh---hHHhhHHHHHHH
Q 030728 97 AVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (172)
Q Consensus 97 ~~vRKkID~vNreLKPLg~---tcqKKEkEYKea 127 (172)
+.+|+.||.++++|-.|=. .|..+=-.||.+
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999876632 344555556654
No 119
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=22.23 E-value=32 Score=24.11 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhhccccch-h--hHHhhHHHHHHHHH-HhhhhhHHHHH
Q 030728 97 AVVRKKIDSVNKELKPLG-H--TCQKKEREYKEALE-AFNEKNKEKVQ 140 (172)
Q Consensus 97 ~~vRKkID~vNreLKPLg-~--tcqKKEkEYKeaLE-AfNEKnkEKa~ 140 (172)
..+|+.||.++++|-.|= + .|..+=-+||.+.- +.....+|+..
T Consensus 2 ~~lR~~ID~ID~~il~Ll~~R~~~~~~ia~~K~~~~~~v~d~~RE~~v 49 (83)
T TIGR01799 2 EDLRGEIDGVDQELLHLLAKRLELVAQVGKVKHAAGLPIYAPEREAAM 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 468999999999987653 2 35555567776532 33334455443
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.91 E-value=6.5e+02 Score=23.43 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhcc------------chhHHHHHHHHHHHhhhh
Q 030728 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALA------------DPMRKEVAVVRKKIDSVN 107 (172)
Q Consensus 40 rsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~a------------DP~RKEV~~vRKkID~vN 107 (172)
...+.-...+-++|+...+++.+.+..-=.--.+.-..|..++..|..+- +...--...+..+|..+.
T Consensus 382 ~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~ 461 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALA 461 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHH
Q ss_pred hccccchhhHHhhHH-HHHHHHHHhhhhhHHHHHHH---HHHHHHhhhHHHHh
Q 030728 108 KELKPLGHTCQKKER-EYKEALEAFNEKNKEKVQLI---TKLMELVGESEKLR 156 (172)
Q Consensus 108 reLKPLg~tcqKKEk-EYKeaLEAfNEKnkEKa~LV---~~LmELv~ESErlR 156 (172)
.+|.- |.-=..--. +|.+|-+.|+.=......|+ +.+..++..+.|.|
T Consensus 462 ~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr 513 (569)
T PRK04778 462 EELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYR 513 (569)
T ss_pred HHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.82 E-value=2.7e+02 Score=22.84 Aligned_cols=88 Identities=27% Similarity=0.434 Sum_probs=60.6
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhh---hccccchhhHHhhHHHHHHHHHHhhh-----
Q 030728 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVN---KELKPLGHTCQKKEREYKEALEAFNE----- 133 (172)
Q Consensus 62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vN---reLKPLg~tcqKKEkEYKeaLEAfNE----- 133 (172)
....+.+..+..+...|....+.|+..-+-.+++++.+...|+.+. ++|.|+-.. +-+.|+.|=+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~-------m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ-------MIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCCC
Confidence 4456667778888888988899999999999999999998887764 577776543 3345555544
Q ss_pred hhHHHHHHHHHHHHH-----hhhHHHHh
Q 030728 134 KNKEKVQLITKLMEL-----VGESEKLR 156 (172)
Q Consensus 134 KnkEKa~LV~~LmEL-----v~ESErlR 156 (172)
.--|...-|..|-.+ |+-+||.|
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~ek~r 152 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLAEKFR 152 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence 233444455656554 45556666
No 122
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=21.61 E-value=5.2e+02 Score=23.08 Aligned_cols=55 Identities=16% Similarity=0.385 Sum_probs=38.3
Q ss_pred HHHHhccchhHHH---HHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHH
Q 030728 83 EELEALADPMRKE---VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKE 137 (172)
Q Consensus 83 eELE~~aDP~RKE---V~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkE 137 (172)
.++.++.+|.--. ...+.-=++.+..++.-|...|.+=+..|+.+++.|-|..+.
T Consensus 296 ~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~ 353 (432)
T smart00498 296 TDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD 353 (432)
T ss_pred HHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4556666554111 122333377788888888899999999999999999886663
No 123
>PRK11032 hypothetical protein; Provisional
Probab=21.55 E-value=1.7e+02 Score=24.04 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhHHHHhhH-HHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhH
Q 030728 60 VREKVQAHLGRVEEETKRL-ATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (172)
Q Consensus 60 VrekV~aqLGRvEeetkrL-a~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tc 117 (172)
+=++|...|...+++.+++ ...++=+...+|=+|.|++-|. +-|.|+|+-++++-
T Consensus 11 ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~---~ylkRDL~ef~~~~ 66 (160)
T PRK11032 11 LVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLIT---RAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3467778888888776665 6667777788888999999886 56778888777743
No 124
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=21.55 E-value=3.1e+02 Score=19.57 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=45.2
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhh
Q 030728 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (172)
Q Consensus 37 e~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~t 116 (172)
......+..|++-..+|+.++-.| ..+.....+|.. .+. -+...|..++|.+|..-.-|.+.
T Consensus 33 ~~~~~~l~~~~~~~~e~~~~~~~~--------~~l~~~~~~L~~-------~~~---~~~~~i~~~~~~l~~~w~~l~~~ 94 (213)
T cd00176 33 ESVEALLKKHEALEAELAAHEERV--------EALNELGEQLIE-------EGH---PDAEEIQERLEELNQRWEELREL 94 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHH--------HHHHHHHHHHHh-------cCC---CChHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666443332 222222233222 111 35677788888888888888888
Q ss_pred HHhhHHHHHHHHHH
Q 030728 117 CQKKEREYKEALEA 130 (172)
Q Consensus 117 cqKKEkEYKeaLEA 130 (172)
|..+......+++.
T Consensus 95 ~~~r~~~L~~~~~~ 108 (213)
T cd00176 95 AEERRQRLEEALDL 108 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777653
No 125
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.50 E-value=56 Score=29.12 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhhhhhccccc
Q 030728 92 MRKEVAVVRKKIDSVNKELKPL 113 (172)
Q Consensus 92 ~RKEV~~vRKkID~vNreLKPL 113 (172)
|..+++.+|+.||.++++|=-|
T Consensus 2 ~~~~L~~lR~~ID~ID~eIl~L 23 (360)
T PRK12595 2 MNEELEQLRKEIDEINLQLLEL 23 (360)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888877543
No 126
>PRK09239 chorismate mutase; Provisional
Probab=21.42 E-value=59 Score=24.37 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhhccccc-hh--hHHhhHHHHHHH
Q 030728 95 EVAVVRKKIDSVNKELKPL-GH--TCQKKEREYKEA 127 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPL-g~--tcqKKEkEYKea 127 (172)
.+..+|+.||.++++|=-| ++ .|.++=-+||-+
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~ 46 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAE 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999988654 22 233444455543
No 127
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=21.36 E-value=2e+02 Score=26.74 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHH
Q 030728 47 RAKEEEIEKKKLE---VREKVQAHLGRVEEETKRLATIREELEALADPMRK 94 (172)
Q Consensus 47 ~aKEEEIErkKmE---VrekV~aqLGRvEeetkrLa~IreELE~~aDP~RK 94 (172)
--+|-||+--+.| +||.|-----.+++--.||+..|+-||||-.|..|
T Consensus 67 y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kk 117 (389)
T PF06216_consen 67 YNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKK 117 (389)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 3578888887776 57777666667888889999999999999999764
No 128
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.04 E-value=3.5e+02 Score=20.00 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhh
Q 030728 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSI 167 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~i 167 (172)
.+..|++|++ |.+-+.+.+-+.--..=+.-| ..||..+..=...-..|.......=..-..+|.+|.++|
T Consensus 42 dL~tI~~kl~--~~~Y~s~~ef~~Dv~li~~Na-~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (112)
T cd05511 42 DLQTIRKKIS--KHKYQSREEFLEDIELIVDNS-VLYNGPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNI 111 (112)
T ss_pred CHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3567777776 355555555444444455555 468887766555545554444333233344555555554
No 129
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=20.60 E-value=1.7e+02 Score=29.33 Aligned_cols=37 Identities=41% Similarity=0.465 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHH
Q 030728 50 EEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELE 86 (172)
Q Consensus 50 EEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE 86 (172)
|-|.|.|+-|.|.+.+..--+.|+|.-|-.|||+|.+
T Consensus 415 eae~e~kreearrkaeeer~~keee~arrefirqey~ 451 (708)
T KOG3654|consen 415 EAEKEQKREEARRKAEEERAPKEEEVARREFIRQEYE 451 (708)
T ss_pred HHHHHHHHHHHHHhhHhhhcchhhhhhHHHHHHHHHH
Confidence 3456667778888888887788888888899999875
No 130
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.52 E-value=8.9e+02 Score=24.46 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=39.1
Q ss_pred HHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHH---HHHHhhhhhHHHHHHHHHHHHHhhhHHHHhh
Q 030728 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKE---ALEAFNEKNKEKVQLITKLMELVGESEKLRM 157 (172)
Q Consensus 84 ELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKe---aLEAfNEKnkEKa~LV~~LmELv~ESErlRm 157 (172)
+|+..-+-+++|+.+++.+.+..-+++. .-..+.+||.. -.+..+-+=.||..-|..|-.=+.+-.++|+
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444556889999988888888877 33455666642 2223333334444444444444444444444
No 131
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.42 E-value=58 Score=28.48 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhhhhhccccchh---hHHhhHHHHHHH
Q 030728 92 MRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (172)
Q Consensus 92 ~RKEV~~vRKkID~vNreLKPLg~---tcqKKEkEYKea 127 (172)
|...+..+|+.||.++++|-.|=. .|.++=-+||..
T Consensus 1 ~~~~L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~ 39 (374)
T PRK11199 1 MVAELTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSR 39 (374)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999876532 244444556654
No 132
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=20.00 E-value=5e+02 Score=21.30 Aligned_cols=71 Identities=25% Similarity=0.426 Sum_probs=48.3
Q ss_pred HHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHH--HH---HHHHH
Q 030728 72 EEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV--QL---ITKLM 146 (172)
Q Consensus 72 EeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa--~L---V~~Lm 146 (172)
=..+++|..--.+.+..||-+..+...+.++|.... .|.+.+...|+-.+.+. .+ -..+.
T Consensus 9 l~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~---------------~y~eei~~l~~~~~~~~~~~l~~En~qi~ 73 (181)
T PF05769_consen 9 LADAKRLVERLKDHDNAADSLLSQAEALNKQIESMR---------------QYQEEIQELNELSKNRPRAGLQQENRQIR 73 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhcccchhHHHhhHHHH
Confidence 345778888788899999999999999999998655 67777666666444221 11 12345
Q ss_pred HHhhhHHHHhh
Q 030728 147 ELVGESEKLRM 157 (172)
Q Consensus 147 ELv~ESErlRm 157 (172)
+|..|.--||.
T Consensus 74 ~Lq~EN~eL~~ 84 (181)
T PF05769_consen 74 QLQQENRELRQ 84 (181)
T ss_pred HHHHHHHHHHH
Confidence 66666665553
Done!