Query 030728
Match_columns 172
No_of_seqs 32 out of 34
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 05:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 89.2 6.9 0.00024 33.0 12.1 23 84-106 492-514 (597)
2 3oja_B Anopheles plasmodium-re 84.9 2 6.7E-05 36.3 6.3 35 105-139 506-540 (597)
3 1fio_A SSO1 protein; four heli 84.5 10 0.00035 28.0 10.3 29 80-108 46-74 (196)
4 2dfs_A Myosin-5A; myosin-V, in 73.7 9.4 0.00032 36.9 7.8 72 70-141 936-1010(1080)
5 3uul_A Utrophin; spectrin repe 73.7 16 0.00056 23.9 7.4 80 37-131 36-115 (118)
6 1ecm_A Endo-oxabicyclic transi 66.5 2 6.7E-05 30.3 1.1 38 88-127 1-41 (109)
7 3oja_A Leucine-rich immune mol 62.4 66 0.0023 26.6 11.2 55 52-106 378-447 (487)
8 1ez3_A Syntaxin-1A; three heli 60.8 38 0.0013 23.3 8.1 30 80-109 47-76 (127)
9 3haj_A Human pacsin2 F-BAR; pa 59.8 82 0.0028 26.9 13.0 62 93-161 184-245 (486)
10 2eqb_B RAB guanine nucleotide 59.0 40 0.0014 24.9 7.0 51 91-148 2-52 (97)
11 2zqm_A Prefoldin beta subunit 54.9 47 0.0016 22.6 7.7 65 63-127 24-103 (117)
12 3vkg_A Dynein heavy chain, cyt 53.4 61 0.0021 35.4 9.8 54 90-143 2010-2063(3245)
13 3uun_A Dystrophin; triple heli 51.4 47 0.0016 21.5 8.4 80 37-131 36-115 (119)
14 3pkr_A FLIG, flagellar motor s 51.1 16 0.00056 30.4 4.3 51 59-114 217-267 (279)
15 4fhr_B Flagellar motor switch 50.7 18 0.00061 28.8 4.3 47 59-110 160-206 (216)
16 2eqb_B RAB guanine nucleotide 48.9 70 0.0024 23.6 6.9 32 112-143 2-33 (97)
17 3na7_A HP0958; flagellar bioge 48.0 99 0.0034 24.3 15.6 71 75-145 73-148 (256)
18 2efk_A CDC42-interacting prote 44.7 1E+02 0.0035 23.5 14.1 21 114-134 178-198 (301)
19 3na7_A HP0958; flagellar bioge 44.2 94 0.0032 24.5 7.5 14 73-86 129-142 (256)
20 3hjl_A Flagellar motor switch 42.8 26 0.00088 29.7 4.3 48 59-111 273-320 (329)
21 4dzo_A Mitotic spindle assembl 42.7 19 0.00064 26.9 3.1 35 94-128 4-38 (123)
22 2i0m_A Phosphate transport sys 42.2 98 0.0033 22.5 10.4 99 47-149 46-155 (216)
23 3pe0_A Plectin; cytoskeleton, 41.3 93 0.0032 25.0 7.2 51 78-131 67-117 (283)
24 1t72_A Phosphate transport sys 40.4 1.1E+02 0.0036 22.5 11.9 98 47-147 50-157 (227)
25 3euj_A Chromosome partition pr 40.4 13 0.00043 33.0 2.1 47 71-117 232-286 (483)
26 2ke4_A CDC42-interacting prote 40.2 63 0.0022 23.2 5.5 51 61-111 17-79 (98)
27 1i84_S Smooth muscle myosin he 37.1 1E+02 0.0036 29.4 7.9 15 99-113 876-890 (1184)
28 2w83_C C-JUN-amino-terminal ki 36.3 1E+02 0.0035 22.2 6.0 39 118-156 12-50 (77)
29 2dfs_A Myosin-5A; myosin-V, in 36.1 1.9E+02 0.0065 28.0 9.5 26 93-118 990-1015(1080)
30 2d8d_A Aroag, phospho-2-dehydr 36.0 13 0.00044 25.2 1.1 52 95-147 4-59 (90)
31 3rmi_A Chorismate mutase prote 35.4 17 0.00058 26.3 1.8 39 88-126 5-47 (114)
32 1s94_A S-syntaxin; three helix 34.1 1.4E+02 0.0048 22.0 8.3 34 77-110 75-108 (180)
33 4etp_A Kinesin-like protein KA 33.8 56 0.0019 27.9 5.0 52 97-148 6-57 (403)
34 2efl_A Formin-binding protein 33.8 1.5E+02 0.0053 22.4 14.1 45 115-159 186-231 (305)
35 2ccy_A Cytochrome C; electron 32.1 34 0.0012 24.6 2.9 44 75-118 68-119 (128)
36 1s94_A S-syntaxin; three helix 31.1 1.6E+02 0.0054 21.7 8.5 88 64-155 48-145 (180)
37 2gtv_X CM, chorismate mutase; 30.4 34 0.0012 24.7 2.7 45 95-139 4-60 (104)
38 1fxk_A Prefoldin; archaeal pro 30.1 1.2E+02 0.0042 20.2 7.8 64 63-126 19-97 (107)
39 1jzp_A Skeletal dihydropydrine 29.6 30 0.001 20.5 1.9 15 45-59 3-17 (26)
40 2vkl_A RV0948C/MT0975; helical 28.8 16 0.00056 25.4 0.7 57 91-148 9-69 (90)
41 3iv1_A Tumor susceptibility ge 26.0 96 0.0033 22.0 4.3 58 60-128 12-76 (78)
42 1ez3_A Syntaxin-1A; three heli 25.9 1.6E+02 0.0055 20.1 9.1 62 64-129 17-78 (127)
43 1sum_B Phosphate transport sys 25.0 2.2E+02 0.0074 21.2 11.8 99 47-149 46-155 (235)
44 3lbx_A Spectrin alpha chain, e 24.4 1E+02 0.0035 22.3 4.4 34 95-128 128-161 (161)
45 1ybz_A Chorismate mutase; cons 23.8 29 0.00098 24.4 1.2 47 95-141 18-68 (91)
46 1go4_E MAD1 (mitotic arrest de 23.2 43 0.0015 24.7 2.1 20 92-111 10-29 (100)
47 3ljc_A ATP-dependent protease 22.6 2.2E+02 0.0074 22.0 6.2 41 46-86 206-249 (252)
48 3m3w_A Pacsin3, protein kinase 22.4 2E+02 0.0067 23.1 6.1 49 112-160 194-242 (320)
49 1q08_A Zn(II)-responsive regul 22.0 1.2E+02 0.0041 19.8 4.0 30 59-88 39-68 (99)
50 3abh_A Pacsin2, protein kinase 21.7 2.8E+02 0.0097 21.5 13.9 55 103-160 194-251 (312)
51 1cpq_A Cytochrome C'; electron 21.6 40 0.0014 24.2 1.7 50 75-131 68-125 (129)
52 3r6n_A Desmoplakin; spectrin r 20.1 2.2E+02 0.0074 24.9 6.3 45 84-131 158-202 (450)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.24 E-value=6.9 Score=32.97 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=9.6
Q ss_pred HHHhccchhHHHHHHHHHHHhhh
Q 030728 84 ELEALADPMRKEVAVVRKKIDSV 106 (172)
Q Consensus 84 ELE~~aDP~RKEV~~vRKkID~v 106 (172)
.+....|.+.+....+.+-+..+
T Consensus 492 ~~~~~~~~~~~~~~~l~~~~~~~ 514 (597)
T 3oja_B 492 RYRLPKDGLARSSDNLNKVFTHL 514 (597)
T ss_dssp HTTCCCCSSSCHHHHHHHHHHHH
T ss_pred hcCccccccCCHHHHHHHHHHHH
Confidence 33344444444444444444333
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.89 E-value=2 Score=36.28 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=14.6
Q ss_pred hhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHH
Q 030728 105 SVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV 139 (172)
Q Consensus 105 ~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa 139 (172)
.+.++++-+.+-=++.++++.....++++++++..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 33333333444444444444444444444444433
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=84.51 E-value=10 Score=28.00 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=16.0
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHhhhhh
Q 030728 80 TIREELEALADPMRKEVAVVRKKIDSVNK 108 (172)
Q Consensus 80 ~IreELE~~aDP~RKEV~~vRKkID~vNr 108 (172)
.++++|+.+.+-+.+=+..++++|..+..
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~ 74 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQR 74 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555555555555443
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.73 E-value=9.4 Score=36.88 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=25.8
Q ss_pred hhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhh---ccccchhhHHhhHHHHHHHHHHhhhhhHHHHHH
Q 030728 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK---ELKPLGHTCQKKEREYKEALEAFNEKNKEKVQL 141 (172)
Q Consensus 70 RvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNr---eLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~L 141 (172)
|++++.++...+.+.+..+.+++-+|++.+++.++.+.. +++-+-......+.+..+.-+.|..-++||-.|
T Consensus 936 rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555666666666665544333 222222333333344444444444444444443
No 5
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=73.66 E-value=16 Score=23.93 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=56.3
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhh
Q 030728 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (172)
Q Consensus 37 e~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~t 116 (172)
+.-+.-+..+++-+.+|...+-.|..=. +... .|=.-+.|.-.+...|+.+++.+|..-.-|...
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~--------~~g~-------~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVL--------QAGN-------QLMTQGTLSDEEEFEIQEQMTLLNARWEALRVE 100 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-------HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-------HHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777776654443221 1122 222235566668889999999999999999999
Q ss_pred HHhhHHHHHHHHHHh
Q 030728 117 CQKKEREYKEALEAF 131 (172)
Q Consensus 117 cqKKEkEYKeaLEAf 131 (172)
|..+.....+||..+
T Consensus 101 ~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 101 SMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 6
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=66.51 E-value=2 Score=30.28 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHHHHHhhhhhccccchh---hHHhhHHHHHHH
Q 030728 88 LADPMRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (172)
Q Consensus 88 ~aDP~RKEV~~vRKkID~vNreLKPLg~---tcqKKEkEYKea 127 (172)
|+|| ..+..+|+.||.++++|--|=. .|.++=-+||..
T Consensus 1 M~~~--~~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 1 MTSE--NPLLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 3588999999999999876532 355555556643
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.45 E-value=66 Score=26.64 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH---------------HHhhHHHHHHHHHhccchhHHHHHHHHHHHhhh
Q 030728 52 EIEKKKLEVREKVQAHLGRVEE---------------ETKRLATIREELEALADPMRKEVAVVRKKIDSV 106 (172)
Q Consensus 52 EIErkKmEVrekV~aqLGRvEe---------------etkrLa~IreELE~~aDP~RKEV~~vRKkID~v 106 (172)
.+.+..-+.+..++.+.+++|. -.++...+..+++..=+-+++++...+..|+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 3445555667777777787773 344455566666666666777777777666544
No 8
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=60.84 E-value=38 Score=23.34 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=18.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHhhhhhc
Q 030728 80 TIREELEALADPMRKEVAVVRKKIDSVNKE 109 (172)
Q Consensus 80 ~IreELE~~aDP~RKEV~~vRKkID~vNre 109 (172)
.++++|+.+.+-..+=...|+.+|..+.+.
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666655443
No 9
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=59.80 E-value=82 Score=26.88 Aligned_cols=62 Identities=13% Similarity=0.336 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHH
Q 030728 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLE 161 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLE 161 (172)
.|++.-++.|.+... +.|++-+.+|+.++.+||.-+..=...+..+++-+-+=|..|+..|-
T Consensus 184 ~k~~eK~~~k~~k~~-------~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK 245 (486)
T 3haj_A 184 PEQLKKLQDKIEKCK-------QDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFR 245 (486)
T ss_dssp SHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567776666665554 45788899999999999988655444444444545555666666653
No 10
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.05 E-value=40 Score=24.91 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030728 91 PMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEL 148 (172)
Q Consensus 91 P~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmEL 148 (172)
|.+++.+.+|-+|+.+-.+++- .+.+|+.....+.+...-+...-...-.+
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~-------~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 52 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSD-------RDDEVKRLREDIAKENELRTKAEEEADKL 52 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776655544 45555555555555554444433333333
No 11
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.86 E-value=47 Score=22.59 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=40.7
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccchh---------------HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHH
Q 030728 63 KVQAHLGRVEEETKRLATIREELEALADPM---------------RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEA 127 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~IreELE~~aDP~---------------RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKea 127 (172)
.+.+++..++.+-+.+.-.-+||+.+.|.. -.=+..|-++++.+...++-|-......++++.+.
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888899999886521 12234455556666555555555555555554443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.37 E-value=61 Score=35.42 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHH
Q 030728 90 DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLIT 143 (172)
Q Consensus 90 DP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~ 143 (172)
.|.|.+++..-+..+.++.+|.-.-...+.-|.....--+.|++...||..|-.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999888888888888776666666666655555666666666665543
No 13
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.40 E-value=47 Score=21.52 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=53.9
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhh
Q 030728 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (172)
Q Consensus 37 e~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~t 116 (172)
+.-..-+..+++-+.+|...+-.|.. |-.....| =.-+.|.--+...|+.+++.+|....-|...
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~--------~~~~g~~L-------~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGN--------ILQLGSKL-------IGTGKLSEDEETEVQEQMNLLNSRWECLRVA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHH-------HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777766544432 22222222 1123344456778999999999999999999
Q ss_pred HHhhHHHHHHHHHHh
Q 030728 117 CQKKEREYKEALEAF 131 (172)
Q Consensus 117 cqKKEkEYKeaLEAf 131 (172)
|..+.+...+||..+
T Consensus 101 ~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 101 SMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 14
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=51.09 E-value=16 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg 114 (172)
++|++++.-+.. |.=..|++|++.||-.-.++|+..|++|=.+=|.|---|
T Consensus 217 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~G 267 (279)
T 3pkr_A 217 DLTDKFLNNMSS-----RAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKG 267 (279)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 678999888752 444568999999999889999999999988777665444
No 15
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=50.66 E-value=18 Score=28.82 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
+||++++.-+. .|.=+.|++|++.+|---.++|+..||.|=.+=|.|
T Consensus 160 e~~e~il~nmS-----~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L 206 (216)
T 4fhr_B 160 ELKEKIFKNMS-----KRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRL 206 (216)
T ss_dssp HHHHHHHTTSC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 57888887775 244457899999999777799999999996665555
No 16
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.93 E-value=70 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=12.4
Q ss_pred cchhhHHhhHHHHHHHHHHhhhhhHHHHHHHH
Q 030728 112 PLGHTCQKKEREYKEALEAFNEKNKEKVQLIT 143 (172)
Q Consensus 112 PLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~ 143 (172)
|||+.|-+---+|..+-..+.....+...|..
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~ 33 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLRE 33 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444444444444444444444444444333
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.02 E-value=99 Score=24.31 Aligned_cols=71 Identities=14% Similarity=0.322 Sum_probs=45.1
Q ss_pred HhhHHHHHHHHHhccch-----hHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 030728 75 TKRLATIREELEALADP-----MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKL 145 (172)
Q Consensus 75 tkrLa~IreELE~~aDP-----~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~L 145 (172)
..|++..+.-|..-.+| +-+|+....++|...+.++..+......++.++.++-+.+.+...+=..+...+
T Consensus 73 ~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 73 NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444443 557888888888888888888888887777777766666655544433333333
No 18
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=44.69 E-value=1e+02 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.4
Q ss_pred hhhHHhhHHHHHHHHHHhhhh
Q 030728 114 GHTCQKKEREYKEALEAFNEK 134 (172)
Q Consensus 114 g~tcqKKEkEYKeaLEAfNEK 134 (172)
.+.|.+-..+|+.++.++|.-
T Consensus 178 ~~~~~~a~~~Y~~~v~~~n~~ 198 (301)
T 2efk_A 178 SHMAEESKNEYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667789999999999987
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=44.20 E-value=94 Score=24.45 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=5.2
Q ss_pred HHHhhHHHHHHHHH
Q 030728 73 EETKRLATIREELE 86 (172)
Q Consensus 73 eetkrLa~IreELE 86 (172)
+...+++.+..+|+
T Consensus 129 ~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 129 DLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 20
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=42.79 E-value=26 Score=29.72 Aligned_cols=48 Identities=13% Similarity=0.372 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccc
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLK 111 (172)
++|++++.-+.. |.=..|++|++.||-.-.++|+..+++|=.+=|.|-
T Consensus 273 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 273 DIKQKFLSNMSK-----RAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 579999888752 344568999999999889999999999987766654
No 21
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=42.69 E-value=19 Score=26.87 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHH
Q 030728 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (172)
Q Consensus 94 KEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaL 128 (172)
+||+.+++.|..+|+-..-|.+--.+|=.||.+|.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998888766666666666666666664
No 22
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=42.16 E-value=98 Score=22.55 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh---hHHHHhhHHH---HHHHHHhccchhHHHHHHHHHHHhh-----hhhccccchh
Q 030728 47 RAKEEEIEKKKLEVREKVQAHLGR---VEEETKRLAT---IREELEALADPMRKEVAVVRKKIDS-----VNKELKPLGH 115 (172)
Q Consensus 47 ~aKEEEIErkKmEVrekV~aqLGR---vEeetkrLa~---IreELE~~aDP~RKEV~~vRKkID~-----vNreLKPLg~ 115 (172)
...+++|-+...++.+.+..-|.+ +....+.+.. |--.||.+||=... ++.+=.++.. ...+|.+++.
T Consensus 46 ~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m~~ 124 (216)
T 2i0m_A 46 INKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAG-IAKAVLQLKENQLAPDEEQLHQMGK 124 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCSSCCC--CHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCchHHHHHHHHHH
Confidence 456778888888888888765443 3444555443 44699999998875 5443333221 1133445555
Q ss_pred hHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 030728 116 TCQKKEREYKEALEAFNEKNKEKVQLITKLMELV 149 (172)
Q Consensus 116 tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv 149 (172)
.|. .-++.|++||...+.+.|.-|-.+-+-+
T Consensus 125 ~v~---~~l~~a~~a~~~~d~~~a~~v~~~d~~i 155 (216)
T 2i0m_A 125 LSL---SMLADLLVAFPLHQASKAISIAQKDEQI 155 (216)
T ss_dssp HHH---HHHHHHHHHGGGTCHHHHHHHHHTHHHH
T ss_pred HHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 554 5789999999999988876555544333
No 23
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=41.26 E-value=93 Score=24.99 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHh
Q 030728 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (172)
Q Consensus 78 La~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAf 131 (172)
+..+=++|-..+.|. ...|+.|++.++..-.-|.+.|...+.-+++|++++
T Consensus 67 v~~~g~~L~~~~hp~---~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 117 (283)
T 3pe0_A 67 LQNAGDRLLREDHPA---RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYF 117 (283)
T ss_dssp HHHHHHHHHHSCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666667776 456889999999999999999999999999988764
No 24
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=40.44 E-value=1.1e+02 Score=22.46 Aligned_cols=98 Identities=6% Similarity=0.117 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh---hhHHHHhhH---HHHHHHHHhccchhHHHHHHHHHHHhh----hhhccccchhh
Q 030728 47 RAKEEEIEKKKLEVREKVQAHLG---RVEEETKRL---ATIREELEALADPMRKEVAVVRKKIDS----VNKELKPLGHT 116 (172)
Q Consensus 47 ~aKEEEIErkKmEVrekV~aqLG---RvEeetkrL---a~IreELE~~aDP~RKEV~~vRKkID~----vNreLKPLg~t 116 (172)
...+++|.+...++++.+...+. -+....+.+ -.|-..||.+||=...=...+....+. +..+|..++..
T Consensus 50 ~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~~~el~~m~~~ 129 (227)
T 1t72_A 50 IKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAEEPPLKPYVNINFMSEI 129 (227)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHH
Confidence 35677888888888888776554 233344443 346679999999988644444444432 23345555555
Q ss_pred HHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 030728 117 CQKKEREYKEALEAFNEKNKEKVQLITKLME 147 (172)
Q Consensus 117 cqKKEkEYKeaLEAfNEKnkEKa~LV~~LmE 147 (172)
| ..-++.|++||...+.+.|.-|..+-+
T Consensus 130 v---~~ml~~a~~a~~~~d~~~a~~v~~~d~ 157 (227)
T 1t72_A 130 V---KEMVNDSVISFIQQDTLLAKKVIEKDD 157 (227)
T ss_dssp H---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5 467899999999999887765555443
No 25
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=40.37 E-value=13 Score=32.95 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=27.5
Q ss_pred hHHHHhhHHHHHHHHH------hccchhHHHHHHHHHHHhhhhhccc--cchhhH
Q 030728 71 VEEETKRLATIREELE------ALADPMRKEVAVVRKKIDSVNKELK--PLGHTC 117 (172)
Q Consensus 71 vEeetkrLa~IreELE------~~aDP~RKEV~~vRKkID~vNreLK--PLg~tc 117 (172)
+++-...+.+.|.||- .+.--+|+.+..++++|+.+|+.|+ |.|+..
T Consensus 232 ~q~~~~~~~~~r~~~~~~~~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~Fg~~~ 286 (483)
T 3euj_A 232 FQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVK 286 (483)
T ss_dssp HHC-----------------CHHHHHHHHHHHHHHHHHHHHHGGGGSSCCBTTEE
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3344467777788875 5667899999999999999999998 666644
No 26
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.24 E-value=63 Score=23.25 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHHHHH----------hccchhH--HHHHHHHHHHhhhhhccc
Q 030728 61 REKVQAHLGRVEEETKRLATIREELE----------ALADPMR--KEVAVVRKKIDSVNKELK 111 (172)
Q Consensus 61 rekV~aqLGRvEeetkrLa~IreELE----------~~aDP~R--KEV~~vRKkID~vNreLK 111 (172)
|.++++.|.+++.+-.+-..=|+-|+ .||||.- .+++.+.++||.+.-+|.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777776 4688875 556677788887776653
No 27
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=37.08 E-value=1e+02 Score=29.43 Aligned_cols=15 Identities=7% Similarity=0.273 Sum_probs=5.5
Q ss_pred HHHHHhhhhhccccc
Q 030728 99 VRKKIDSVNKELKPL 113 (172)
Q Consensus 99 vRKkID~vNreLKPL 113 (172)
+.+.+..+..++.+|
T Consensus 876 le~~l~ele~~l~~L 890 (1184)
T 1i84_S 876 AEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 28
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.30 E-value=1e+02 Score=22.15 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHh
Q 030728 118 QKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLR 156 (172)
Q Consensus 118 qKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlR 156 (172)
..=-+||.+-|+.-|.-|--|-.||.++=||.+|-+-++
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~ 50 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQ 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334578999999999999999999999999999987665
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.07 E-value=1.9e+02 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHH
Q 030728 93 RKEVAVVRKKIDSVNKELKPLGHTCQ 118 (172)
Q Consensus 93 RKEV~~vRKkID~vNreLKPLg~tcq 118 (172)
.+|++..++.++..+++.+-|-+.|+
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444443
No 30
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=35.98 E-value=13 Score=25.21 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhhccccchh---hHHhhHHHHHHHHH-HhhhhhHHHHHHHHHHHH
Q 030728 95 EVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQLITKLME 147 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~---tcqKKEkEYKeaLE-AfNEKnkEKa~LV~~LmE 147 (172)
.++.+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+. ++.++.+
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~-vl~~~~~ 59 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEE-MLAYLTA 59 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHH-HHHHHHH
Confidence 477899999999999876543 46666667775432 2223445543 3334443
No 31
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=35.38 E-value=17 Score=26.30 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=25.7
Q ss_pred ccch-hHHHHHHHHHHHhhhhhccccchh---hHHhhHHHHHH
Q 030728 88 LADP-MRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKE 126 (172)
Q Consensus 88 ~aDP-~RKEV~~vRKkID~vNreLKPLg~---tcqKKEkEYKe 126 (172)
|.|| +-.++..+|..||.++++|--|=. .|.++=-+||.
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~ 47 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKA 47 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 445688999999999998866532 34555555554
No 32
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=34.10 E-value=1.4e+02 Score=21.99 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHhhhhhcc
Q 030728 77 RLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (172)
Q Consensus 77 rLa~IreELE~~aDP~RKEV~~vRKkID~vNreL 110 (172)
....++++|+.+.+-..+=...|+++|..+.+..
T Consensus 75 ~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 75 TDDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777776665543
No 33
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.83 E-value=56 Score=27.94 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030728 97 AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEL 148 (172)
Q Consensus 97 ~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmEL 148 (172)
+.+.=+|..+.+++..|.+....-+.++++.-+-|.+.......|-+.+.||
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444556666666677777777777788888888888888888888888776
No 34
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=33.77 E-value=1.5e+02 Score=22.38 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=26.6
Q ss_pred hhHHhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhHHHHhhHH
Q 030728 115 HTCQKKEREYKEALEAFNEK-NKEKVQLITKLMELVGESEKLRMKK 159 (172)
Q Consensus 115 ~tcqKKEkEYKeaLEAfNEK-nkEKa~LV~~LmELv~ESErlRmkK 159 (172)
+.|.+-..+|+.++.++|.- +..=...+..+++-+-.=|.-|...
T Consensus 186 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~ 231 (305)
T 2efl_A 186 QMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVR 231 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788999999999986 4433333444444333444444433
No 35
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=32.08 E-value=34 Score=24.56 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred HhhHHHHH----HHHHhccchhHHHHHHHHHHH----hhhhhccccchhhHH
Q 030728 75 TKRLATIR----EELEALADPMRKEVAVVRKKI----DSVNKELKPLGHTCQ 118 (172)
Q Consensus 75 tkrLa~Ir----eELE~~aDP~RKEV~~vRKkI----D~vNreLKPLg~tcq 118 (172)
|+-+..|| ++...+++-++..+..+-.-. +.+-..+.++|++|.
T Consensus 68 s~A~p~IW~~~~~~F~~~~~~~~~aa~~l~~aA~~gd~~~~~a~~~v~~~Ck 119 (128)
T 2ccy_A 68 GETKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCK 119 (128)
T ss_dssp CCBCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhHHH
Confidence 56778888 677778888888877666533 555677889999994
No 36
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=31.15 E-value=1.6e+02 Score=21.70 Aligned_cols=88 Identities=9% Similarity=0.278 Sum_probs=48.7
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhh----------
Q 030728 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNE---------- 133 (172)
Q Consensus 64 V~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNE---------- 133 (172)
|...|..+..-..+|......+ |+.|- ....++.+|+.+..+++-++..|..+=+..+...+..-.
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~--L~~~~--~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri 123 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDI--LSAPQ--TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRI 123 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Confidence 4445555555556666665553 33332 244688888888888888888888877766654433210
Q ss_pred hhHHHHHHHHHHHHHhhhHHHH
Q 030728 134 KNKEKVQLITKLMELVGESEKL 155 (172)
Q Consensus 134 KnkEKa~LV~~LmELv~ESErl 155 (172)
+..-..-|..+|.++..+--..
T Consensus 124 r~~q~~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 124 RKTQYSTISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 1112344566666666554433
No 37
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=30.38 E-value=34 Score=24.70 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhhccc--------cch---hhHHhhHHHHHHHHH-HhhhhhHHHH
Q 030728 95 EVAVVRKKIDSVNKELK--------PLG---HTCQKKEREYKEALE-AFNEKNKEKV 139 (172)
Q Consensus 95 EV~~vRKkID~vNreLK--------PLg---~tcqKKEkEYKeaLE-AfNEKnkEKa 139 (172)
.++.+|++||.++++|- -|= ..|.+.=-+||.... ..+...+|+.
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~ 60 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKY 60 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHH
Confidence 47889999999999987 443 256677677776543 3445556654
No 38
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.14 E-value=1.2e+02 Score=20.18 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHhccchh---------------HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHH
Q 030728 63 KVQAHLGRVEEETKRLATIREELEALADPM---------------RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKE 126 (172)
Q Consensus 63 kV~aqLGRvEeetkrLa~IreELE~~aDP~---------------RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKe 126 (172)
.+.+++..++.+-+.+.-.-+||+.+.|.. -.=+..|-++++.+..+++-|-..+...++++.+
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888888888998886521 1123345555555555555555444444444433
No 39
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=29.56 E-value=30 Score=20.46 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHHHH
Q 030728 45 TFRAKEEEIEKKKLE 59 (172)
Q Consensus 45 ~F~aKEEEIErkKmE 59 (172)
+=++++|++.|+||-
T Consensus 3 aqKekeEe~kr~k~~ 17 (26)
T 1jzp_A 3 AQKAKAEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999864
No 40
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=28.75 E-value=16 Score=25.38 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHhhhhhccccchh---hHHhhHHHHHHHHH-HhhhhhHHHHHHHHHHHHH
Q 030728 91 PMRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQLITKLMEL 148 (172)
Q Consensus 91 P~RKEV~~vRKkID~vNreLKPLg~---tcqKKEkEYKeaLE-AfNEKnkEKa~LV~~LmEL 148 (172)
|.-..+..+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+. ++.++.++
T Consensus 9 ~~~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~-vl~~~~~~ 69 (90)
T 2vkl_A 9 QPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMK-VIERYSEL 69 (90)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHH-HHHHHHTT
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHH-HHHHHHHH
Confidence 4444689999999999999876643 35556666775431 1223445543 33444443
No 41
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.04 E-value=96 Score=22.05 Aligned_cols=58 Identities=31% Similarity=0.479 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHH-------HhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHH
Q 030728 60 VREKVQAHLGRVEEETKRLATIREEL-------EALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (172)
Q Consensus 60 VrekV~aqLGRvEeetkrLa~IreEL-------E~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaL 128 (172)
+|.+++..+|..--|-.-|..+.+|| +.|-.-+-.|.+.+.|-|+ +|+.|+.|...||
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~-----------~lk~K~~EL~~~l 76 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE-----------LLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHh
Confidence 45555666666666666777777765 4566666777777777775 4566666665554
No 42
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.89 E-value=1.6e+02 Score=20.08 Aligned_cols=62 Identities=11% Similarity=0.340 Sum_probs=40.5
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHH
Q 030728 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129 (172)
Q Consensus 64 V~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLE 129 (172)
|+..|..+..-..+|...-+.+ |+.|.. ...++..+|.+..+++-++..|..+=+..+...+
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~--L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAI--LASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555565555544 555543 3468888888888888888888887776655444
No 43
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=24.98 E-value=2.2e+02 Score=21.25 Aligned_cols=99 Identities=22% Similarity=0.310 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh---hHHHHhhHH---HHHHHHHhccchhHHHHHH-HHHHHhh----hhhccccchh
Q 030728 47 RAKEEEIEKKKLEVREKVQAHLGR---VEEETKRLA---TIREELEALADPMRKEVAV-VRKKIDS----VNKELKPLGH 115 (172)
Q Consensus 47 ~aKEEEIErkKmEVrekV~aqLGR---vEeetkrLa---~IreELE~~aDP~RKEV~~-vRKkID~----vNreLKPLg~ 115 (172)
...+++|-+...++.+.+..-|.+ +....+++. .|--.||.+||=... ++. +++..+. .-.+|..++.
T Consensus 46 ~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m~~ 124 (235)
T 1sum_B 46 IADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHD-IAKNVLELMEEPPLKPLEDIPAMAN 124 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCCCSCCSHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHH
Confidence 356777888888888887654433 445555543 445699999999886 444 4443332 2223445555
Q ss_pred hHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 030728 116 TCQKKEREYKEALEAFNEKNKEKVQLITKLMELV 149 (172)
Q Consensus 116 tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv 149 (172)
.| ..-++.|++||...+.++|.-|-..-+-+
T Consensus 125 ~v---~~~l~~a~~a~~~~d~~~A~~v~~~d~~i 155 (235)
T 1sum_B 125 QT---SEMLKFALRMFADVNVEKSFEVCRMDSKV 155 (235)
T ss_dssp HH---HHHHHHHHHHHHSCCHHHHTHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55 45789999999999988886665544433
No 44
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=24.42 E-value=1e+02 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHH
Q 030728 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaL 128 (172)
....|+.|++.+|..-.-|...|..+-....+||
T Consensus 128 ~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eAl 161 (161)
T 3lbx_A 128 AHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161 (161)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567888888888888888888877776666654
No 45
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=23.78 E-value=29 Score=24.37 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhccccchh---hHHhhHHHHHHHHH-HhhhhhHHHHHH
Q 030728 95 EVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQL 141 (172)
Q Consensus 95 EV~~vRKkID~vNreLKPLg~---tcqKKEkEYKeaLE-AfNEKnkEKa~L 141 (172)
.+..+|..||.++++|--|=. .|.++=-+||.+.. ..-...+|+..|
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl 68 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHH
Confidence 588999999999999876643 46666667776432 222455665543
No 46
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.21 E-value=43 Score=24.73 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhhhhhccc
Q 030728 92 MRKEVAVVRKKIDSVNKELK 111 (172)
Q Consensus 92 ~RKEV~~vRKkID~vNreLK 111 (172)
++-+|..+|++||.+++|-.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~ 29 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERS 29 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776643
No 47
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=22.64 E-value=2.2e+02 Score=21.97 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHH---HhhHHHHHHHHH
Q 030728 46 FRAKEEEIEKKKLEVREKVQAHLGRVEEE---TKRLATIREELE 86 (172)
Q Consensus 46 F~aKEEEIErkKmEVrekV~aqLGRvEee---tkrLa~IreELE 86 (172)
+=.+|-++-+-+.+++.+|..++..---| -..|..|++||-
T Consensus 206 lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 206 MMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567777777888899999888877666 345777777774
No 48
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=22.39 E-value=2e+02 Score=23.09 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=30.7
Q ss_pred cchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHH
Q 030728 112 PLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKL 160 (172)
Q Consensus 112 PLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKL 160 (172)
-..+.+.+-..+|..++..||.-...=-+-+..+.+-+-+=|.-|+..|
T Consensus 194 k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~l 242 (320)
T 3m3w_A 194 RCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFF 242 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667778999999999998654322333444444444555566555
No 49
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.00 E-value=1.2e+02 Score=19.83 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHhc
Q 030728 59 EVREKVQAHLGRVEEETKRLATIREELEAL 88 (172)
Q Consensus 59 EVrekV~aqLGRvEeetkrLa~IreELE~~ 88 (172)
++++-+..|+..++++-.+|..++..|+.+
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887777776653
No 50
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.71 E-value=2.8e+02 Score=21.45 Aligned_cols=55 Identities=11% Similarity=0.335 Sum_probs=33.2
Q ss_pred HhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---hhHHHHhhHHH
Q 030728 103 IDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELV---GESEKLRMKKL 160 (172)
Q Consensus 103 ID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv---~ESErlRmkKL 160 (172)
++.+...+.=+.+.|++-..+|..++.++|.-.. +..+.+..+. -.=|..|+..|
T Consensus 194 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~---~~~~~~~~~~~~~Q~lee~Rl~~l 251 (312)
T 3abh_A 194 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP---QYMENMEQVFEQCQQFEEKRLRFF 251 (312)
T ss_dssp HHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566778889999999999998643 3444444433 33444444443
No 51
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=21.55 E-value=40 Score=24.16 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=31.3
Q ss_pred HhhHHHHHHH---HHhccchhHHHHHHHHHH-----HhhhhhccccchhhHHhhHHHHHHHHHHh
Q 030728 75 TKRLATIREE---LEALADPMRKEVAVVRKK-----IDSVNKELKPLGHTCQKKEREYKEALEAF 131 (172)
Q Consensus 75 tkrLa~IreE---LE~~aDP~RKEV~~vRKk-----ID~vNreLKPLg~tcqKKEkEYKeaLEAf 131 (172)
|+-+..||+. ...+++-++..+..+-.- .+.+-..+.++|++|- -|++.|
T Consensus 68 s~A~p~IW~~~~~F~~~~~~~~~aa~~L~~aA~~gD~~~~~~a~~~v~~~Ck-------aCH~~y 125 (129)
T 1cpq_A 68 TEAKAAIWANMDDFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCK-------ACHDDY 125 (129)
T ss_dssp CCBCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred cccCHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhHHH-------HHHHHH
Confidence 5566667764 444556666665544432 4555667889999994 566655
No 52
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=20.13 E-value=2.2e+02 Score=24.86 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHh
Q 030728 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (172)
Q Consensus 84 ELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAf 131 (172)
.|-.-+.|... .|+.+++.++..-.-|-+-|...+.-+++|++++
T Consensus 158 ~Li~~~Hpas~---~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 202 (450)
T 3r6n_A 158 QLVLNQHPASD---KIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF 202 (450)
T ss_dssp HHHHTTCTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667654 4778999999999999999999999999998875
Done!