BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030729
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 25 AAQHTVGGSQGWVE--SADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDL 82
A H VG S GW D WAS F VGD ++F Y H+V+++ E +KSC+
Sbjct: 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQ-FKSCNS 60
Query: 83 GTAKDSMNSGNDVVKLVKPGTRYFACGTSGHCEQGMKVKI 122
+ S SG D + L +PGT YF CG GHC+ G KV+I
Sbjct: 61 SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEI 100
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 26 AQHTVGGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTA 85
A + VGGS GW + + SW G+ F+ GD ++F Y P +H+VV + ++ + +C+
Sbjct: 1 AVYVVGGSGGWTFNTE--SWPKGKRFRAGDILLFNYNPSMHNVVVV-NQGGFSTCNTPAG 57
Query: 86 KDSMNSGNDVVKLVKPGTRYFACGTSGHCEQGMKVKI 122
SG D +KL K G YF C GHC+ GMK+ +
Sbjct: 58 AKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAV 93
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 28 HTVGGSQGWVESADLN---SWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGT 84
H VG + GW + N WA+G+TF+VGD + F + H+V E+ ++ ++ +C+
Sbjct: 6 HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVN 65
Query: 85 AKDSMNSGNDVV-KLVKPGTRYFACGTSGHCEQGMKVKI 122
+ + + + V+ +L + G YF C HC G K+ I
Sbjct: 66 SDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSI 104
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 35 GWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSMNSGND 94
GW S ++N A G++F+ GD +VFKY G H+VV + Y SC + +SG D
Sbjct: 6 GW--SFNVNG-ARGKSFRAGDVLVFKYIKGQHNVVAVNGR-GYASCSAPRGARTYSSGQD 61
Query: 95 VVKLVKPGTRYFACGTSGHCEQGMKVKI 122
+KL + G YF C GHC GMK+ I
Sbjct: 62 RIKLTR-GQNYFICSFPGHCGGGMKIAI 88
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 27 QHTVGGSQGWVESADLN---SWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLG 83
+ VGG W +D +WA+G+TF+VGD++ F + G+H V + ++ A+ +C
Sbjct: 3 DYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVV-TKDAFDNCKKE 61
Query: 84 TAKDSMNSGNDVVKLVKPGTRYFACGTSGHCEQGMKVKI 122
M + + L G +Y+ C HC G K+ I
Sbjct: 62 NPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSI 100
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 30 VGGSQGWVESADLN----SWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLGT 84
VGG+ +V D N +W +TF V D F++TP H+ + LP+ ++Y+ D+ T
Sbjct: 473 VGGNP-FVHHQDRNRMVKAWEKLETFVVHD---FQWTPTARHADIVLPATTSYERNDIET 528
Query: 85 AKDSMNSGNDVV-KLVKP 101
D N+G + K+V+P
Sbjct: 529 IGDYSNTGILAMKKIVEP 546
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 30 VGGSQGWVESADLN----SWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLGT 84
VGG+ +V D N +W +TF V D F++TP H+ + LP+ ++Y+ D+ T
Sbjct: 473 VGGNP-FVHHQDRNRMVKAWEKLETFVVHD---FQWTPTARHADIVLPATTSYERNDIET 528
Query: 85 AKDSMNSGNDVV-KLVKP 101
D N+G + K+V+P
Sbjct: 529 IGDYSNTGILAMKKIVEP 546
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 30 VGGSQGWVESADLN----SWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLGT 84
VGG+ +V D N +W +TF V D F++TP H+ + LP+ ++Y+ D+ T
Sbjct: 431 VGGNP-FVHHQDRNRMVKAWEKLETFIVHD---FQWTPTARHADIVLPATTSYERNDIET 486
Query: 85 AKDSMNSGNDVV-KLVKP 101
D N+G + K+V+P
Sbjct: 487 IGDYSNTGILAMKKIVEP 504
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 30 VGGSQGWVESADLN----SWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLGT 84
VGG+ +V D N +W +TF V D F++TP H+ + LP+ ++Y+ D+ T
Sbjct: 473 VGGNP-FVHHQDRNRMVKAWEKLETFVVHD---FQWTPTARHADIVLPATTSYERNDIET 528
Query: 85 AKDSMNSGNDVV-KLVKP 101
D N+G + K+V+P
Sbjct: 529 IGDYSNTGILAMKKIVEP 546
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 30 VGGSQGWVESADLN----SWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLGT 84
VGG+ +V D N +W +TF V D F++TP H+ + LP+ ++Y+ D+ T
Sbjct: 473 VGGNP-FVHHQDRNRMVKAWEKLETFVVHD---FQWTPTARHADIVLPATTSYERNDIET 528
Query: 85 AKDSMNSGNDVV-KLVKP 101
D N+G + K+V+P
Sbjct: 529 IGDYSNTGILAMKKIVEP 546
>pdb|3AHM|A Chain A, Pz Peptidase A
pdb|3AHM|B Chain B, Pz Peptidase A
pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
Length = 564
Score = 26.6 bits (57), Expect = 7.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 11 LVLIISALTAKEASAAQHTVGGSQGWVESADLNS 44
LV + + ++ E Q VGG +GW+ S D S
Sbjct: 530 LVRVANLISPFEDGCVQSVVGGIEGWLNSVDDQS 563
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,530,634
Number of Sequences: 62578
Number of extensions: 126190
Number of successful extensions: 317
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 13
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)