Query 030729
Match_columns 172
No_of_seqs 127 out of 1050
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 3.3E-43 1.1E-47 271.8 5.8 110 24-134 2-116 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 2.8E-41 9.6E-46 251.6 5.8 105 24-129 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 8.3E-41 2.8E-45 251.5 6.2 108 26-134 2-113 (116)
4 2cbp_A Cucumber basic protein; 100.0 9.9E-39 3.4E-43 232.8 6.4 96 26-125 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.3E-34 4.5E-39 209.2 7.5 91 26-125 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.4 1.3E-12 4.5E-17 98.7 8.5 97 23-125 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.3 1E-11 3.5E-16 86.4 6.6 85 27-125 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.2 1.8E-11 6.3E-16 94.9 7.4 77 48-125 62-154 (154)
9 1pmy_A Pseudoazurin; electron 99.1 4E-10 1.4E-14 84.4 8.1 82 31-126 11-94 (123)
10 1paz_A Pseudoazurin precursor; 99.1 4.5E-10 1.5E-14 84.2 7.9 81 31-126 11-94 (123)
11 2aan_A Auracyanin A; cupredoxi 99.0 1.2E-09 4E-14 82.3 10.0 96 23-125 16-139 (139)
12 2gim_A Plastocyanin; beta shee 99.0 1.3E-09 4.5E-14 77.8 9.4 85 27-125 5-105 (106)
13 1iuz_A Plastocyanin; electron 99.0 5.4E-10 1.8E-14 79.4 5.9 92 26-125 2-98 (98)
14 3erx_A Pseudoazurin; copper pr 99.0 8.7E-10 3E-14 82.8 7.0 81 31-126 11-94 (123)
15 3ef4_A Pseudoazurin, blue copp 99.0 1.7E-09 5.9E-14 81.4 8.2 83 30-126 10-95 (124)
16 1plc_A Plastocyanin; electron 99.0 2.2E-09 7.7E-14 75.9 8.2 88 27-125 2-99 (99)
17 3tu6_A Pseudoazurin (blue copp 99.0 1.5E-09 5.1E-14 81.9 7.6 83 30-127 11-97 (127)
18 1kdj_A Plastocyanin; electron 98.9 2.3E-09 8E-14 76.1 7.7 90 27-125 2-102 (102)
19 1b3i_A PETE protein, protein ( 98.9 3.6E-09 1.2E-13 74.5 7.5 88 27-125 4-97 (97)
20 2plt_A Plastocyanin; electron 98.9 1.4E-09 4.8E-14 76.6 5.2 92 26-125 2-98 (98)
21 1byp_A Protein (plastocyanin); 98.9 5.4E-09 1.8E-13 73.8 8.0 91 27-125 2-99 (99)
22 1pcs_A Plastocyanin; electron 98.8 1.1E-08 3.7E-13 72.1 6.1 91 27-125 4-98 (98)
23 4hci_A Cupredoxin 1; structura 98.5 6.8E-08 2.3E-12 68.7 2.8 85 22-125 10-100 (100)
24 2ux6_A Pseudoazurin; type-1 co 98.3 1.1E-06 3.9E-11 65.3 7.0 80 31-126 11-92 (122)
25 3c75_A Amicyanin; copper prote 98.3 1.6E-06 5.4E-11 65.1 7.4 73 35-125 54-132 (132)
26 3cvb_A Plastocyanin; cupredoxi 98.3 3.5E-06 1.2E-10 59.4 8.4 88 27-125 4-104 (105)
27 1cuo_A Protein (azurin ISO-2); 98.2 9.1E-06 3.1E-10 61.2 10.4 91 27-125 4-128 (129)
28 3ay2_A Lipid modified azurin p 98.2 3.2E-06 1.1E-10 66.6 8.0 92 26-125 43-166 (167)
29 2ov0_A Amicyanin; beta-sandwic 98.2 4.8E-06 1.6E-10 59.7 6.9 84 23-125 16-105 (105)
30 1id2_A Amicyanin; beta barrel, 98.2 5.8E-06 2E-10 59.5 7.4 83 24-125 18-106 (106)
31 2iaa_C Azurin; quinoprotein, t 98.0 2.3E-05 7.8E-10 58.9 8.4 90 28-125 4-127 (128)
32 2ccw_A Azurin II, AZN-2; elect 98.0 2.3E-05 7.9E-10 58.9 7.9 91 27-125 4-128 (129)
33 1nwp_A Azurin; electron transp 98.0 2.1E-05 7.3E-10 59.1 7.5 91 27-125 4-128 (128)
34 1iko_P Ephrin-B2; greek KEY, g 97.8 8.7E-06 3E-10 64.8 2.6 80 50-130 25-144 (178)
35 2x11_B Ephrin-A5; receptor-sig 97.6 0.00012 4.2E-09 58.1 6.2 99 23-129 29-165 (177)
36 3czu_B Ephrin-A1; ATP-binding, 97.3 0.00027 9.1E-09 56.4 5.5 104 22-133 26-167 (182)
37 3d12_B Ephrin-B3; beta propell 97.3 0.00026 8.8E-09 54.3 4.6 76 49-125 22-140 (141)
38 1iby_A Nitrosocyanin; RED copp 97.2 0.00026 9E-09 50.6 3.7 66 48-125 39-111 (112)
39 1shx_A Ephrin-A5; ephrin signa 97.2 0.00053 1.8E-08 52.4 5.3 76 49-128 23-135 (138)
40 2cua_A Protein (CUA); CUA cent 97.1 0.0014 4.7E-08 49.4 7.1 66 48-125 61-134 (135)
41 2vsm_B Ephrin-B2; developmenta 96.9 0.00087 3E-08 51.3 4.3 76 50-126 24-139 (140)
42 3fsa_A Azurin; copper, cupredo 96.2 0.047 1.6E-06 40.8 9.9 88 28-125 5-125 (125)
43 2wo3_B Ephrin-A2; transferase- 95.9 0.01 3.6E-07 46.1 5.3 76 49-128 32-145 (157)
44 2dv6_A Nitrite reductase; elec 95.9 0.013 4.4E-07 51.0 6.3 78 47-129 55-135 (447)
45 3s8f_B Cytochrome C oxidase su 95.3 0.04 1.4E-06 43.0 6.6 68 47-125 93-167 (168)
46 1fwx_A Nitrous oxide reductase 95.2 0.022 7.6E-07 52.5 5.5 68 48-127 514-593 (595)
47 3sbq_A Nitrous-oxide reductase 95.1 0.026 8.9E-07 52.3 5.6 73 35-126 552-637 (638)
48 3hei_B Ephrin-A1; EPH receptor 94.0 0.059 2E-06 40.7 4.3 75 49-125 22-131 (132)
49 1oe1_A Dissimilatory copper-co 90.2 0.7 2.4E-05 38.5 6.9 77 48-128 66-154 (336)
50 1kbv_A ANIA, major outer membr 89.5 0.61 2.1E-05 39.0 6.0 77 48-128 71-158 (327)
51 1mzy_A Copper-containing nitri 89.3 0.68 2.3E-05 38.6 6.1 77 48-128 65-154 (333)
52 2zoo_A Probable nitrite reduct 86.5 0.79 2.7E-05 39.6 5.0 77 48-128 61-148 (442)
53 3gdc_A Multicopper oxidase; be 85.2 1.6 5.5E-05 35.8 6.0 81 48-129 67-157 (288)
54 2bw4_A Copper-containing nitri 82.3 2.6 9E-05 35.0 6.2 77 48-128 72-160 (340)
55 3kw8_A Laccase, putative coppe 74.9 5.6 0.00019 32.2 5.9 31 100-130 239-269 (276)
56 2gsm_B Cytochrome C oxidase su 70.2 6.6 0.00022 32.3 5.3 66 48-126 172-246 (262)
57 1aoz_A Ascorbate oxidase; oxid 69.8 9.6 0.00033 34.0 6.7 79 48-128 35-125 (552)
58 2dv6_A Nitrite reductase; elec 68.4 10 0.00035 32.5 6.3 75 48-128 196-283 (447)
59 2q9o_A Laccase-1; multicopper 66.4 8.7 0.0003 34.4 5.7 77 48-127 68-158 (559)
60 3cg8_A Laccase; oxidoreductase 63.9 3.3 0.00011 34.9 2.2 103 48-152 210-334 (343)
61 2zwn_A Two-domain type laccase 63.5 10 0.00036 31.5 5.3 79 48-128 36-128 (339)
62 3g5w_A Multicopper oxidase typ 63.0 6.5 0.00022 32.7 3.9 79 48-128 35-127 (318)
63 1zpu_A Iron transport multicop 62.9 14 0.00048 32.9 6.3 78 48-128 35-126 (534)
64 3sqr_A Laccase; multicopper ox 62.1 16 0.00053 33.3 6.5 33 95-127 156-188 (580)
65 1mzy_A Copper-containing nitri 60.1 9 0.00031 31.7 4.3 33 95-127 286-319 (333)
66 3hb3_B Cytochrome C oxidase su 59.9 7.3 0.00025 32.8 3.7 67 48-127 190-265 (298)
67 3l6w_A Hemocyanin 1; cupredoxi 59.4 7.4 0.00025 35.1 3.8 75 48-125 412-491 (491)
68 1cyx_A CYOA; electron transpor 58.2 7.9 0.00027 31.0 3.4 65 48-125 42-115 (205)
69 1oe1_A Dissimilatory copper-co 58.1 11 0.00038 31.1 4.5 33 95-127 286-319 (336)
70 3gdc_A Multicopper oxidase; be 56.6 4.4 0.00015 33.1 1.8 78 47-126 195-288 (288)
71 1v54_B Cytochrome C oxidase po 56.6 7.5 0.00026 31.3 3.1 30 95-126 183-215 (227)
72 3t6v_A Laccase; beta barrel, o 54.7 21 0.00073 31.5 6.0 79 48-128 36-131 (495)
73 1sdd_A Coagulation factor V; c 53.9 1.8 6.1E-05 35.8 -1.1 77 48-127 216-301 (306)
74 3pxl_A Laccase; 4-copper prote 53.4 24 0.00081 31.3 6.1 80 48-128 35-130 (499)
75 2j5w_A Ceruloplasmin, ferroxid 53.3 9.8 0.00033 37.0 3.8 76 48-127 633-718 (1065)
76 2uxt_A Protein SUFI, SUFI; oxi 50.7 9.6 0.00033 33.2 3.0 75 48-128 51-140 (451)
77 3kw8_A Laccase, putative coppe 47.3 26 0.00089 28.2 5.0 80 48-129 37-143 (276)
78 1fft_B Ubiquinol oxidase; elec 44.6 11 0.00037 31.9 2.3 66 47-125 151-225 (315)
79 3tas_A Small laccase, multi-co 44.5 30 0.001 28.4 5.0 30 100-129 114-149 (313)
80 1kbv_A ANIA, major outer membr 42.5 18 0.00062 29.9 3.4 78 48-127 215-308 (327)
81 2r7e_B Coagulation factor VIII 42.1 18 0.00061 34.0 3.6 77 49-129 201-300 (770)
82 3iuw_A Activating signal coint 41.8 10 0.00034 26.2 1.4 16 49-64 36-52 (83)
83 3t9w_A Small laccase, multi-co 41.2 14 0.00047 30.4 2.4 34 99-132 260-293 (299)
84 3t9w_A Small laccase, multi-co 41.0 34 0.0012 28.0 4.8 29 100-128 130-164 (299)
85 1yel_A AT1G16640; CESG, protei 39.7 9.7 0.00033 26.4 1.1 19 46-64 73-91 (104)
86 1sdd_A Coagulation factor V; c 38.9 55 0.0019 26.6 5.7 80 48-128 61-168 (306)
87 1v10_A Laccase; multicopper bl 38.1 44 0.0015 29.5 5.4 34 95-128 117-151 (521)
88 4i1k_A B3 domain-containing tr 35.3 14 0.00048 27.5 1.4 26 46-71 112-137 (146)
89 2nms_A CMRF35-like-molecule 1; 35.3 8.4 0.00029 26.9 0.1 27 100-128 86-113 (124)
90 3zx1_A Oxidoreductase, putativ 34.6 26 0.00089 30.9 3.3 75 48-129 83-174 (481)
91 1hfu_A Laccase 1; oxidoreducta 32.6 48 0.0016 29.1 4.6 34 95-128 96-130 (503)
92 2zoo_A Probable nitrite reduct 32.3 35 0.0012 29.1 3.6 34 95-128 265-299 (442)
93 2j5w_A Ceruloplasmin, ferroxid 32.2 31 0.001 33.5 3.5 77 48-130 272-360 (1065)
94 1sdd_B Coagulation factor V; c 31.8 24 0.00082 31.9 2.6 76 48-126 240-327 (647)
95 2k75_A Uncharacterized protein 31.6 18 0.00062 25.3 1.4 29 27-60 41-69 (106)
96 3m62_B UV excision repair prot 31.4 24 0.00082 24.4 2.0 19 115-133 63-81 (106)
97 2xu9_A Laccase; oxidoreductase 29.9 51 0.0017 28.3 4.3 73 49-126 49-135 (439)
98 3aw5_A Multicopper oxidase; be 29.8 13 0.00045 32.3 0.5 76 48-129 39-129 (448)
99 3rrq_A Protein PD-1, programme 29.3 18 0.00063 25.2 1.1 13 49-61 11-23 (129)
100 2z0t_A Putative uncharacterize 29.0 15 0.00052 26.4 0.6 11 49-59 32-42 (109)
101 1skh_A Major prion protein 2; 28.1 32 0.0011 19.3 1.7 16 1-16 1-16 (30)
102 3cg8_A Laccase; oxidoreductase 27.7 54 0.0018 27.3 3.9 17 48-64 78-94 (343)
103 3tas_A Small laccase, multi-co 27.5 33 0.0011 28.1 2.6 31 100-130 245-275 (313)
104 3abg_A Bilirubin oxidase; clea 27.3 1.1E+02 0.0039 27.0 6.2 76 48-129 70-160 (534)
105 2z0b_A GDE5, KIAA1434, putativ 27.1 35 0.0012 24.7 2.3 39 25-63 23-75 (131)
106 1wia_A Hypothetical ubiquitin- 26.8 77 0.0026 20.9 3.9 16 115-130 67-82 (95)
107 2hzs_I RNA polymerase II media 26.1 0.81 2.8E-05 24.7 -4.9 19 48-66 4-22 (27)
108 2bw4_A Copper-containing nitri 25.3 71 0.0024 26.1 4.2 33 95-127 292-325 (340)
109 2r7e_A Coagulation factor VIII 24.4 87 0.003 29.1 5.0 78 48-127 245-330 (742)
110 2kbn_A Conserved protein; nucl 23.3 42 0.0014 23.4 2.1 31 27-60 38-70 (109)
111 1xne_A Hypothetical protein PF 23.1 23 0.00079 25.5 0.7 12 49-60 33-44 (113)
112 3g5w_A Multicopper oxidase typ 21.9 1E+02 0.0034 25.3 4.5 34 95-128 239-278 (318)
113 2hd9_A UPF0310 protein PH1033; 21.7 19 0.00065 26.8 -0.1 43 34-78 19-72 (145)
114 2qcp_X Cation efflux system pr 21.3 35 0.0012 22.8 1.3 17 48-64 51-67 (80)
115 1sdd_B Coagulation factor V; c 20.7 1.2E+02 0.004 27.4 5.0 79 48-129 70-178 (647)
116 2vb2_X Copper protein, cation 20.2 38 0.0013 23.0 1.3 21 44-64 55-75 (88)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=3.3e-43 Score=271.76 Aligned_cols=110 Identities=26% Similarity=0.634 Sum_probs=99.8
Q ss_pred cceEEEecCCCCCCCC---CCcccccCCCeEEecCEEEEEEccCCCcEEEe-CCcccCCCCCCCCCCCccCCCCcEEEe-
Q 030729 24 SAAQHTVGGSQGWVES---ADLNSWASGQTFKVGDQIVFKYTPGLHSVVEL-PSESAYKSCDLGTAKDSMNSGNDVVKL- 98 (172)
Q Consensus 24 ~a~~~~VG~~~GW~~~---~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V-~~~~~y~~C~~~~~~~~~~~G~~~v~l- 98 (172)
+|++|+|||+.||+++ .||++||++++|++||+|+|+|.+++|+|+|| ++ ++|+.|+.++++..+++|++.|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~-~~y~~C~~s~p~~~~~~G~~~v~L~ 80 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETK-QSFDACNFVNSDNDVERTSPVIERL 80 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCH-HHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCch-hhcCccCCCCccccccCCCeEEEec
Confidence 5789999999999999 78999999999999999999999999999999 55 999999999999999999999999
Q ss_pred ecCceEEEEcCCCCCccCCCeEEEEecCCCCCCCCC
Q 030729 99 VKPGTRYFACGTSGHCEQGMKVKITTFSGTAPSTPA 134 (172)
Q Consensus 99 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~~~~p~ 134 (172)
+++|++||||++++||++||||+|+|....++++|+
T Consensus 81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~ 116 (138)
T 1jer_A 81 DELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMP 116 (138)
T ss_dssp CSSEEEEEECCSTTTGGGTCEEEEEEECCC------
T ss_pred cCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCC
Confidence 999999999999999999999999999876654443
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=2.8e-41 Score=251.55 Aligned_cols=105 Identities=40% Similarity=0.810 Sum_probs=98.1
Q ss_pred cceEEEecCCCCCCCC--CCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCccCCCCcEEEeecC
Q 030729 24 SAAQHTVGGSQGWVES--ADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSMNSGNDVVKLVKP 101 (172)
Q Consensus 24 ~a~~~~VG~~~GW~~~--~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~~v~l~~~ 101 (172)
+|++|+|||+.||+++ .||++||++++|++||+|+|+|.+++|+|+||++ ++|+.|+.++|+..+++|++.|+|+++
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~-~~y~~C~~~~p~~~~~~G~~~v~L~~~ 79 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQ-EQFKSCNSSSPAASYTSGADSIPLKRP 79 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECH-HHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEECh-HHCCcccCCCcccccCCCCEEEEECCC
Confidence 4689999999999998 7999999999999999999999999999999977 999999999999999999999999999
Q ss_pred ceEEEEcCCCCCccCCCeEEEEecCCCC
Q 030729 102 GTRYFACGTSGHCEQGMKVKITTFSGTA 129 (172)
Q Consensus 102 G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 129 (172)
|++||||++++||++||||.|+|.+..+
T Consensus 80 G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 80 GTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred cCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 9999999999999999999999986543
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=8.3e-41 Score=251.52 Aligned_cols=108 Identities=28% Similarity=0.602 Sum_probs=95.3
Q ss_pred eEEEecCCCCCCCC---CCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCccCCCCcEEEeecCc
Q 030729 26 AQHTVGGSQGWVES---ADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSMNSGNDVVKLVKPG 102 (172)
Q Consensus 26 ~~~~VG~~~GW~~~---~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G 102 (172)
++|+|||+.||+++ .||++|+++++|++||+|+|+|.+++|+|+||++ ++|+.|+.++++..+++|++.|+|+++|
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~-~~y~~C~~~~~~~~~~~G~~~v~l~~~G 80 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTK-DAFDNCKKENPISHMTTPPVKIMLNTTG 80 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECH-HHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEECh-hhcCccCCCCCccccCCCCeEEEECCCC
Confidence 57999999999985 5799999999999999999999999999999977 9999999999999999999999999999
Q ss_pred eEEEEcCCCCCccCCCeEEE-EecCCCCCCCCC
Q 030729 103 TRYFACGTSGHCEQGMKVKI-TTFSGTAPSTPA 134 (172)
Q Consensus 103 ~~YFiC~~~~HC~~GmKl~I-~V~~~~~~~~p~ 134 (172)
++||||++++||++||||+| +|.+.++.+|||
T Consensus 81 ~~yFic~~~~HC~~Gmkl~In~V~~~~~~~~~~ 113 (116)
T 1x9u_A 81 PQYYICTVGDHCRVGQKLSINVVGAGGAGGGAT 113 (116)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEECC--------
T ss_pred CEEEECCCCCccccCCEEEEEEECCCCCCCCCC
Confidence 99999999999999999999 887765544433
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=9.9e-39 Score=232.81 Aligned_cols=96 Identities=36% Similarity=0.844 Sum_probs=91.8
Q ss_pred eEEEecCCCCCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCccCCCCcEEEeecCceEE
Q 030729 26 AQHTVGGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSMNSGNDVVKLVKPGTRY 105 (172)
Q Consensus 26 ~~~~VG~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~Y 105 (172)
++|+|||+.||++ +|++||++++|++||+|+|+|.+++|+|+||++ ++|++|+.++|+..+++|++.|+| ++|++|
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~-~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~y 76 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQ-GGFSTCNTPAGAKVYTSGRDQIKL-PKGQSY 76 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECH-HHHHHTCCCTTCEEECSSEEEEEC-CSEEEE
T ss_pred CEEEECCcCCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEECH-HHCCccCCCCCcccccCCCeEEEe-cCCCEE
Confidence 4799999999997 699999999999999999999999999999987 999999999999999999999999 899999
Q ss_pred EEcCCCCCccCCCeEEEEec
Q 030729 106 FACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 106 FiC~~~~HC~~GmKl~I~V~ 125 (172)
|||++++||++||||+|+|.
T Consensus 77 Fic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 77 FICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EECCSTTTGGGTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999984
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.3e-34 Score=209.20 Aligned_cols=91 Identities=38% Similarity=0.742 Sum_probs=86.1
Q ss_pred eEEEecCCCCCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCccCCCCcEEEeecCceEE
Q 030729 26 AQHTVGGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSMNSGNDVVKLVKPGTRY 105 (172)
Q Consensus 26 ~~~~VG~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~Y 105 (172)
++|+| ||+++ ++|+++++|++||+|+|+|.+++|+|+||++ ++|++|+.++++..+++|++.|+|+ +|++|
T Consensus 1 ~~y~V----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~-~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~y 71 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNG-RGYASCSAPRGARTYSSGQDRIKLT-RGQNY 71 (91)
T ss_dssp CEEEE----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEECH-HHHHTTCCCTTCEEECSSEEEEECC-SEEEE
T ss_pred CEEEE----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEECH-HHcCCcCCCCCcccccCCCcEEEeC-CCCeE
Confidence 46889 89988 8999999999999999999999999999986 9999999999999999999999995 89999
Q ss_pred EEcCCCCCccCCCeEEEEec
Q 030729 106 FACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 106 FiC~~~~HC~~GmKl~I~V~ 125 (172)
|||++++||++||||+|+|.
T Consensus 72 Fic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 72 FICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EECCSTTTTTTTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.38 E-value=1.3e-12 Score=98.66 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=67.3
Q ss_pred ccceEEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-----CCCcEEEeCCcccCCC--------------C--
Q 030729 23 ASAAQHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-----GLHSVVELPSESAYKS--------------C-- 80 (172)
Q Consensus 23 a~a~~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-----~~H~V~~V~~~~~y~~--------------C-- 80 (172)
+...++.|+-. .+|.+.++ ..+++.||+|.|.|.+ ..|+++......++.. .
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQT------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPP 87 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCS------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCC
T ss_pred CCCEEEEEEEeCCCceEeCC------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCc
Confidence 34567777753 46888874 7899999999999876 4799988743111111 0
Q ss_pred -CCC------CCCCccCCCCcEEEeecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 81 -DLG------TAKDSMNSGNDVVKLVKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 81 -~~~------~~~~~~~~G~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+.. ..+....++...|+++++|.|||+|++++||+.|||..|+|.
T Consensus 88 ~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 88 PDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 000 111122233456778899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.26 E-value=1e-11 Score=86.35 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=62.2
Q ss_pred EEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCcccCCCCCCCCCCCccCCC-CcEEEeecCce
Q 030729 27 QHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLGTAKDSMNSG-NDVVKLVKPGT 103 (172)
Q Consensus 27 ~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~~~y~~C~~~~~~~~~~~G-~~~v~l~~~G~ 103 (172)
+..+|++ .+|.+.++ ..++++||+|.|.+.. ..|+|..... ..+. ........| ...++++++|.
T Consensus 4 ~v~~~~~~~~~~f~P~------~i~v~~Gd~V~~~n~~~~~H~v~~~~~-~~~~-----~~~~~~~~g~~~~~~f~~~G~ 71 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS------TIEIQAGDTVQWVNNKLAPHNVVVEGQ-PELS-----HKDLAFSPGETFEATFSEPGT 71 (91)
T ss_dssp EEEESCTTSCSSEESS------EEEECTTCEEEEEECSSCCEEEEETTC-GGGC-----EEEEECSTTCEEEEECCSCEE
T ss_pred EEEEecCCCccEEeCC------EEEECCCCEEEEEECCCCCcEEEEeCC-CccC-----cccceeCCCCEEEEEeCCCEE
Confidence 4556754 56887764 6799999999999874 5799987543 2221 001122334 35788999999
Q ss_pred EEEEcCCCCCccCCCeEEEEec
Q 030729 104 RYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 104 ~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
|+|+|. .||..||+..|.|.
T Consensus 72 y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 72 YTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEeC--CCccCCCEEEEEEC
Confidence 999999 89999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.23 E-value=1.8e-11 Score=94.90 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCeEEecCEEEEEEccC----CCcEEEeCCcccCCCCCCCCCCCc-------cCCC---Cc--EEEeecCceEEEEcCCC
Q 030729 48 GQTFKVGDQIVFKYTPG----LHSVVELPSESAYKSCDLGTAKDS-------MNSG---ND--VVKLVKPGTRYFACGTS 111 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~----~H~V~~V~~~~~y~~C~~~~~~~~-------~~~G---~~--~v~l~~~G~~YFiC~~~ 111 (172)
..++++||+|+|++.+. .|++..++....|+.|.....+.. ...| .. .|++ ++|.|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 57889999999999753 699999976567888876543321 1223 33 5677 999999999999
Q ss_pred CCccCCCeEEEEec
Q 030729 112 GHCEQGMKVKITTF 125 (172)
Q Consensus 112 ~HC~~GmKl~I~V~ 125 (172)
+||+.||+..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999984
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=99.07 E-value=4e-10 Score=84.43 Aligned_cols=82 Identities=27% Similarity=0.238 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCc-cCCCC-cEEEeecCceEEEEc
Q 030729 31 GGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDS-MNSGN-DVVKLVKPGTRYFAC 108 (172)
Q Consensus 31 G~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~-~~~G~-~~v~l~~~G~~YFiC 108 (172)
|++.++.+.|+ ..++++||+|.|.+....|+|+... .|...+.... ...|. ..++++++|.|+|+|
T Consensus 11 g~~g~~~F~P~------~i~V~~GdtV~f~n~~~~H~v~~~~------~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1pmy_A 11 GPGGMMVFDPA------LVRLKPGDSIKFLPTDKGHNVETIK------GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKC 78 (123)
T ss_dssp ETTEEEEEESS------EEEECTTCEEEEECSSSSCCCEECT------TSSCTTCCCCBCCTTSCEEEECCSCEEEEEEC
T ss_pred cCCCCceEeCC------EEEECCCCEEEEEECCCCcEEEEec------ccCCCCccceecCCCCEEEEEeCCCeEEEEEe
Confidence 55545777664 6899999999999987789998752 1222111111 11233 478999999999999
Q ss_pred CCCCCccCCCeEEEEecC
Q 030729 109 GTSGHCEQGMKVKITTFS 126 (172)
Q Consensus 109 ~~~~HC~~GmKl~I~V~~ 126 (172)
+ .||..||+..|+|.+
T Consensus 79 ~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 79 A--PHYMMGMVALVVVGD 94 (123)
T ss_dssp S--TTTTTTCEEEEEESS
T ss_pred C--CccccCCEEEEEEcC
Confidence 8 599999999999974
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=99.06 E-value=4.5e-10 Score=84.17 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=59.5
Q ss_pred cCCCCCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCccC--CCC-cEEEeecCceEEEE
Q 030729 31 GGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSMN--SGN-DVVKLVKPGTRYFA 107 (172)
Q Consensus 31 G~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~~--~G~-~~v~l~~~G~~YFi 107 (172)
|++.++.+.|+ ..++++||+|.|.+....|+|+... .|...+.. .+. .|. ..++++++|.|+|+
T Consensus 11 g~~g~~~F~P~------~i~V~~GdtV~f~~~~~~H~v~~~~------~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~ 77 (123)
T 1paz_A 11 GAEGAMVFEPA------YIKANPGDTVTFIPVDKGHNVESIK------DMIPEGAE-KFKSKINENYVLTVTQPGAYLVK 77 (123)
T ss_dssp ETTEEEEEESS------EEEECTTCEEEEEESSSSCCCEECT------TCSCTTCC-CCBCCTTCCEEEECCSCEEEEEE
T ss_pred cCCCCceEeCC------EEEECCCCEEEEEECCCCeEEEEec------ccCCCCcc-ceecCCCCEEEEEeCCCEEEEEE
Confidence 55545777664 6899999999999987789998742 12211111 111 233 47899999999999
Q ss_pred cCCCCCccCCCeEEEEecC
Q 030729 108 CGTSGHCEQGMKVKITTFS 126 (172)
Q Consensus 108 C~~~~HC~~GmKl~I~V~~ 126 (172)
|+ .||..||+..|+|.+
T Consensus 78 C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 78 CT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp CT--TTGGGTCEEEEEESS
T ss_pred eC--CcccCCCEEEEEEcC
Confidence 98 599999999999974
No 11
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.05 E-value=1.2e-09 Score=82.31 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=66.3
Q ss_pred ccceEEEecC-CCCCCCCCCcccccCCCeEEecCEEEEEEccC----CCcEEEeCCc-----------------ccCCCC
Q 030729 23 ASAAQHTVGG-SQGWVESADLNSWASGQTFKVGDQIVFKYTPG----LHSVVELPSE-----------------SAYKSC 80 (172)
Q Consensus 23 a~a~~~~VG~-~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~----~H~V~~V~~~-----------------~~y~~C 80 (172)
+...++.||. ..++.+.++ ..+++.||++.|+|.+. .|+++..... .+|..|
T Consensus 16 ~~~~~V~v~~~~~~~~F~p~------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~ 89 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDKT------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPA 89 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSCS------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCS
T ss_pred CcCEEEEEEecCCccEEcCC------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCc
Confidence 3445667752 346777764 67899999999988653 6999887541 156666
Q ss_pred CCCCCC---CccCCCC-cEEEe--ecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 81 DLGTAK---DSMNSGN-DVVKL--VKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 81 ~~~~~~---~~~~~G~-~~v~l--~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
...+.+ .....|. ..+++ +++|.|+|+|.+++||+ ||+..|.|.
T Consensus 90 ~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 90 DKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 533321 1233444 34444 48999999999999999 999999984
No 12
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=99.04 E-value=1.3e-09 Score=77.77 Aligned_cols=85 Identities=25% Similarity=0.247 Sum_probs=61.0
Q ss_pred EEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCcccCCCCCCC----------CCCCccCCCC-
Q 030729 27 QHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLG----------TAKDSMNSGN- 93 (172)
Q Consensus 27 ~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~~~y~~C~~~----------~~~~~~~~G~- 93 (172)
+..+|.+ .++.+.++ ..++++||+|.|.+.. ..|++..... |... ........|.
T Consensus 5 ~V~~~~~~~~~~F~P~------~i~v~~Gd~V~~~n~~~~~H~~~~~~~------~~~~~~g~~~~~~~~~~~~~~pG~~ 72 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA------KLTIKPGDTVEFLNNKVPPHNVVFDAA------LNPAKSADLAKSLSHKQLLMSPGQS 72 (106)
T ss_dssp EEEESCTTCCSSEESS------EEEECTTCEEEEEECSSSCCCBEECSS------SSTTCCHHHHHHHCBCSCCCSTTCE
T ss_pred EEEEEecCCcceEcCC------EEEECCCCEEEEEECCCCCceEEEeCC------CCcccccccchhccccceeeCCCCE
Confidence 4566643 57888764 6799999999999775 5799986432 2211 0011123343
Q ss_pred cEEEe---ecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 94 DVVKL---VKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 94 ~~v~l---~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
..+++ +++|.|+|+|. .||+.||+..|+|.
T Consensus 73 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 73 TSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 47888 89999999999 89999999999996
No 13
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.99 E-value=5.4e-10 Score=79.37 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=61.8
Q ss_pred eEEEecC-CCCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCc--ccCCCCCCCCCCCccCCCC-cEEEeec
Q 030729 26 AQHTVGG-SQGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSE--SAYKSCDLGTAKDSMNSGN-DVVKLVK 100 (172)
Q Consensus 26 ~~~~VG~-~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~--~~y~~C~~~~~~~~~~~G~-~~v~l~~ 100 (172)
.+..+|+ +.++.+.|+ ..++++||+|.|.+.. ..|+|+..+.. ++++.+...........|. ..+++++
T Consensus 2 ~~V~m~~~~~~~~F~P~------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~ 75 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVPS------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLST 75 (98)
T ss_dssp EEEEESCTTSCCSEESS------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCS
T ss_pred EEEEEecCCCCcEEeCC------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCC
Confidence 3455554 456887764 7899999999999876 47999875320 0122111000001223444 4788999
Q ss_pred CceEEEEcCCCCCccCCCeEEEEec
Q 030729 101 PGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 101 ~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+|.|+|+|.. ||+.||+..|.|.
T Consensus 76 ~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 76 PGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp CEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CEEEEEEchh--hccCCCEEEEEEC
Confidence 9999999995 9999999999984
No 14
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.99 E-value=8.7e-10 Score=82.77 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=59.6
Q ss_pred cCCCCCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCcc--C-CCCcEEEeecCceEEEE
Q 030729 31 GGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSM--N-SGNDVVKLVKPGTRYFA 107 (172)
Q Consensus 31 G~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~--~-~G~~~v~l~~~G~~YFi 107 (172)
|++..+.+.|+ ..++++||+|.|.+....|+|+..+. |...+. ..+ . +....++++++|.|+|+
T Consensus 11 g~~G~~~F~P~------~i~V~~GdtV~f~~~~~~H~v~~~~~------~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~ 77 (123)
T 3erx_A 11 GESGAMVFEPA------FVRAEPGDVINFVPTDKSHNVEAIKE------ILPEGV-ESFKSKINESYTLTVTEPGLYGVK 77 (123)
T ss_dssp ETTEEEEEESS------EEEECTTEEEEEEESSTTCCCEECTT------SSCTTC-CCCBCCTTCCEEEEECSCEEEEEE
T ss_pred CCCCcEeEeCC------EEEECCCCEEEEEECCCCceEEEcCC------cCCCCc-cceecCCCCEEEEEeCCCeEEEEE
Confidence 33434777764 78999999999999877799987422 222211 111 1 22358899999999999
Q ss_pred cCCCCCccCCCeEEEEecC
Q 030729 108 CGTSGHCEQGMKVKITTFS 126 (172)
Q Consensus 108 C~~~~HC~~GmKl~I~V~~ 126 (172)
|. .||..||+..|+|..
T Consensus 78 C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 78 CT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp CG--GGTTTTCEEEEEESS
T ss_pred eC--CCCcCCcEEEEEECC
Confidence 99 899999999999974
No 15
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.97 E-value=1.7e-09 Score=81.44 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=61.7
Q ss_pred ecCCC-CCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCC-ccCCCC-cEEEeecCceEEE
Q 030729 30 VGGSQ-GWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKD-SMNSGN-DVVKLVKPGTRYF 106 (172)
Q Consensus 30 VG~~~-GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~-~~~~G~-~~v~l~~~G~~YF 106 (172)
+|++. ++.+.|+ ..++++||+|.|.+....|||+..+. +...+... ....|. ..++++++|.|.|
T Consensus 10 ~g~~G~~~~F~P~------~i~V~~GDTV~f~n~~~~Hnv~~~~~------~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y 77 (124)
T 3ef4_A 10 KDDAGNTMVFQPG------FVKVEAGDTVKFVPTDKSHNAESVRE------VWPEGVAPVKGGFSKEVVFNAEKEGLYVL 77 (124)
T ss_dssp ECTTSCEEEEESS------EEEECTTCEEEEECSSSSCCCEECTT------TSCTTSCCCBCCTTCCEEEECCSSEEEEE
T ss_pred cCCCCceeEEeCC------EEEECCCCEEEEEECCCCccEEEeCC------cCCCCccccccCCCCEEEEEeCCCeEEEE
Confidence 45544 4888875 78999999999999888899987422 22222111 112233 5899999999999
Q ss_pred EcCCCCCccCCCeEEEEecC
Q 030729 107 ACGTSGHCEQGMKVKITTFS 126 (172)
Q Consensus 107 iC~~~~HC~~GmKl~I~V~~ 126 (172)
+|. .||..||+..|+|..
T Consensus 78 ~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 78 KCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp ECT--TTGGGTCEEEEEESS
T ss_pred EcC--CCCcCCCEEEEEECC
Confidence 998 799999999999975
No 16
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.97 E-value=2.2e-09 Score=75.91 Aligned_cols=88 Identities=24% Similarity=0.274 Sum_probs=61.1
Q ss_pred EEEecC-CCCCCCCCCcccccCCCeEEecCEEEEEEccC-CCcEEEeCCcccCCCCCCC-------CCCCccCCCC-cEE
Q 030729 27 QHTVGG-SQGWVESADLNSWASGQTFKVGDQIVFKYTPG-LHSVVELPSESAYKSCDLG-------TAKDSMNSGN-DVV 96 (172)
Q Consensus 27 ~~~VG~-~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~-~H~V~~V~~~~~y~~C~~~-------~~~~~~~~G~-~~v 96 (172)
+..+|+ +.++.+.++ ..++++||+|.|++... .|+|+.... . . ++... ........|. ..+
T Consensus 2 ~v~m~~~~~~~~F~P~------~i~v~~G~tV~~~n~~~~~H~v~~~~~-~-~-p~~~~~~~~~~~~~~~~~~~G~~~~~ 72 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS------EFSISPGEKIVFKNNAGFPHNIVFDED-S-I-PSGVDASKISMSEEDLLNAKGETFEV 72 (99)
T ss_dssp EEEESCTTCCSCEESS------EEEECTTCEEEEEECSSCCBCCEECTT-S-S-CTTCCHHHHCCCTTCCBCSTTCEEEE
T ss_pred EEEEecCCCcceEeCC------EEEECCCCEEEEEECCCCceEEEEeCC-C-C-cccccccccccccCccccCCCCEEEE
Confidence 355664 445777664 68999999999988764 799987542 1 1 12111 0001123343 478
Q ss_pred EeecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 97 KLVKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 97 ~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+++++|.|+|+|. .||+.||+..|+|.
T Consensus 73 tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 73 ALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp ECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 9999999999999 89999999999984
No 17
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.96 E-value=1.5e-09 Score=81.95 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=61.1
Q ss_pred ecCCC-CCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCcc--CCC-CcEEEeecCceEE
Q 030729 30 VGGSQ-GWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDSM--NSG-NDVVKLVKPGTRY 105 (172)
Q Consensus 30 VG~~~-GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~~--~~G-~~~v~l~~~G~~Y 105 (172)
+|++. +..+.|+ ..++++||+|.|.+....|+|+..+. +...... .+ ..| ...++++++|.|+
T Consensus 11 ~g~~g~~~~F~P~------~i~V~~GDtVtf~n~~~~H~v~~~~~------~~P~g~~-~f~s~pGet~s~TF~~pG~y~ 77 (127)
T 3tu6_A 11 KAADGRVMAFEPA------VIRAQPGDTVTFVAKDKGHNSALMKG------GAPEGAE-TWKGKINEEITVTLSKPGVYM 77 (127)
T ss_dssp ECTTSCEEEEESS------EEEECTTCEEEEECSSSSCCCEECTT------CSCTTCC-CCBCCTTCCCEEECCSCEEEE
T ss_pred cCCCCcccEEeCC------EEEECCCCEEEEEECCCCceEEEccC------cCCCCcc-ceecCCCCEEEEEeCCCeEEE
Confidence 36554 4777764 78999999999999877899987432 1111111 11 123 3589999999999
Q ss_pred EEcCCCCCccCCCeEEEEecCC
Q 030729 106 FACGTSGHCEQGMKVKITTFSG 127 (172)
Q Consensus 106 FiC~~~~HC~~GmKl~I~V~~~ 127 (172)
|+|. .||..||+..|.|..+
T Consensus 78 y~C~--~H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 78 YQCA--PHVGMGMIGAIVVGEP 97 (127)
T ss_dssp EECT--TTGGGTCEEEEEESSC
T ss_pred EEeC--CCCcCCcEEEEEECcC
Confidence 9999 6999999999999853
No 18
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.94 E-value=2.3e-09 Score=76.08 Aligned_cols=90 Identities=21% Similarity=0.167 Sum_probs=61.4
Q ss_pred EEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCcccCC----CCCCCCCC----CccCCCC-cE
Q 030729 27 QHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYK----SCDLGTAK----DSMNSGN-DV 95 (172)
Q Consensus 27 ~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~~~y~----~C~~~~~~----~~~~~G~-~~ 95 (172)
+..+|++ .++.+.++ ..++++||+|.|.+.. ..|+++.... ..++ .|.....+ .....|. ..
T Consensus 2 ~V~~g~~~~~~~F~P~------~i~v~~G~tV~~~n~~~~~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~ 74 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD------SITVSAGEAVEFTLVGETGHNIVFDIP-AGAPGTVASELKAASMDENDLLSEDEPSFK 74 (102)
T ss_dssp EEEESCTTCCCCEESS------EEEECTTCCEEEEECSSSCBCCEECCC-TTCCHHHHHHHHHTSCCTTCCBBTTBCEEE
T ss_pred EEEEecCCCccEEeCC------EEEECCCCEEEEEECCCCCeEEEEeCc-ccccccccchhhcccccccceecCCCCEEE
Confidence 4567763 45777664 6799999999998765 4799987532 2221 11100001 1123343 47
Q ss_pred EEeecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 96 VKLVKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 96 v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 75 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 75 AKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp ECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 88899999999999 99999999999984
No 19
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.91 E-value=3.6e-09 Score=74.46 Aligned_cols=88 Identities=26% Similarity=0.279 Sum_probs=60.4
Q ss_pred EEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCcccCCCCCCC---CCCCccCCC-CcEEEeec
Q 030729 27 QHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLG---TAKDSMNSG-NDVVKLVK 100 (172)
Q Consensus 27 ~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~~~y~~C~~~---~~~~~~~~G-~~~v~l~~ 100 (172)
+..+|++ .++.+.++ ..++++||+|.|.+.. ..|++..... .. ..... ........| ...+++++
T Consensus 4 ~V~~~~~~~~~~F~P~------~i~v~~G~~V~~~n~~~~~H~~~~~~~-~~--~~~~~~~~~~~~~~~~g~~~~~tf~~ 74 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK------ALSISAGDTVEFVMNKVGPHNVIFDKV-PA--GESAPALSNTKLAIAPGSFYSVTLGT 74 (97)
T ss_dssp EEEEEETTTEEEEESS------EEEECTTCEEEEEECSSCCCCBEEEEC-CT--TSCHHHHCBCCCCCSCSCCEEEECCS
T ss_pred EEEEeccCCccEEeCC------EEEECCCCEEEEEECCCCCeEEEEeCC-CC--ccccccccccceecCCCCEEEEEeCC
Confidence 4556643 56777664 6799999999999875 4799987543 11 11100 001112233 35788999
Q ss_pred CceEEEEcCCCCCccCCCeEEEEec
Q 030729 101 PGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 101 ~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+|.|+|+|. .||+.||+..|.|.
T Consensus 75 ~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 75 PGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CSEEEEECS--STTTTTCEEEEEEC
T ss_pred CeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999 89999999999984
No 20
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.90 E-value=1.4e-09 Score=76.59 Aligned_cols=92 Identities=24% Similarity=0.247 Sum_probs=61.3
Q ss_pred eEEEecC-CCCCCCCCCcccccCCCeEEecCEEEEEEccC-CCcEEEeCCc--ccCCCCCCCCCCCccCCCC-cEEEeec
Q 030729 26 AQHTVGG-SQGWVESADLNSWASGQTFKVGDQIVFKYTPG-LHSVVELPSE--SAYKSCDLGTAKDSMNSGN-DVVKLVK 100 (172)
Q Consensus 26 ~~~~VG~-~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~-~H~V~~V~~~--~~y~~C~~~~~~~~~~~G~-~~v~l~~ 100 (172)
.+..+|+ +.++.+.++ ..++++||+|.|.+... .|++...... .+++.+...........|. ..+++++
T Consensus 2 ~~V~m~~~~~~~~F~P~------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~ 75 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTA 75 (98)
T ss_dssp EEEEESCTTCCSSEESS------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCS
T ss_pred EEEEEecCCCCceEeCC------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCC
Confidence 3556664 456777764 67899999999988764 7999874320 0111110000001223344 4788899
Q ss_pred CceEEEEcCCCCCccCCCeEEEEec
Q 030729 101 PGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 101 ~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+|+|.|+|. .||+.||+..|.|.
T Consensus 76 ~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 76 AGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp CEEEEEECG--GGGGGTCEEEEEEC
T ss_pred CeEEEEEcC--CccccCCeEEEEEC
Confidence 999999999 79999999999984
No 21
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.90 E-value=5.4e-09 Score=73.79 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=61.2
Q ss_pred EEEecC-CCCCCCCCCcccccCCCeEEecCEEEEEEccC-CCcEEEeCCc--ccCCCCCCC--CCCCccCCCC-cEEEee
Q 030729 27 QHTVGG-SQGWVESADLNSWASGQTFKVGDQIVFKYTPG-LHSVVELPSE--SAYKSCDLG--TAKDSMNSGN-DVVKLV 99 (172)
Q Consensus 27 ~~~VG~-~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~-~H~V~~V~~~--~~y~~C~~~--~~~~~~~~G~-~~v~l~ 99 (172)
+..+|+ +.++.+.++ ..++++||+|.|++... .|++...... .+++.+... ........|. ..++++
T Consensus 2 ~V~~~~~~~~~~F~P~------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~ 75 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLT 75 (99)
T ss_dssp EEEESCTTSCCSEESS------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEEC
T ss_pred EEEEecCCCcceEeCC------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeC
Confidence 455664 456777764 67899999999988764 7999875320 111211100 0001123343 478899
Q ss_pred cCceEEEEcCCCCCccCCCeEEEEec
Q 030729 100 KPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 100 ~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
++|.|.|+|. .||+.||+..|.|.
T Consensus 76 ~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 76 EKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCcEEEEEcC--CccccCCEEEEEEC
Confidence 9999999999 89999999999984
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.77 E-value=1.1e-08 Score=72.10 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=59.9
Q ss_pred EEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCccc-CCCCCCCCCCCccCCCC-cEEEeecCc
Q 030729 27 QHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSESA-YKSCDLGTAKDSMNSGN-DVVKLVKPG 102 (172)
Q Consensus 27 ~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~~~-y~~C~~~~~~~~~~~G~-~~v~l~~~G 102 (172)
+..+|.+ .++.+.++ ..++++||+|.|.+.. ..|++........ -+..+..........|. ..++++++|
T Consensus 4 ~V~~~~~~~~~~F~P~------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G 77 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPG 77 (98)
T ss_dssp EEEESCTTSCSSEESS------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEecCCCccEEeCC------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCe
Confidence 4556643 56777764 6799999999999775 4799987432000 00000000001123343 478889999
Q ss_pred eEEEEcCCCCCccCCCeEEEEec
Q 030729 103 TRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 103 ~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
.|+|+|. .||..||+..|.|.
T Consensus 78 ~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 78 TYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEEcC--CccccCCeEEEEEC
Confidence 9999999 79999999999984
No 23
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.46 E-value=6.8e-08 Score=68.69 Aligned_cols=85 Identities=20% Similarity=0.107 Sum_probs=53.6
Q ss_pred cccceEEEecCCCCCCCCCCcccccCCCeEEecCEEEEEEcc---CCCcEEEeCCcccCCCCCCCCCCCccCCCC---cE
Q 030729 22 EASAAQHTVGGSQGWVESADLNSWASGQTFKVGDQIVFKYTP---GLHSVVELPSESAYKSCDLGTAKDSMNSGN---DV 95 (172)
Q Consensus 22 ~a~a~~~~VG~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~---~~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~ 95 (172)
.+.++++.|--. .+.+.|+ ..++++||++.|.+.+ ..|++..- ++.. ......|. ..
T Consensus 10 ~a~~~~v~V~~~-~~~F~P~------~i~v~~G~tV~~~~~n~d~~~H~~~~~----~~~~------~~~~~pg~~~~~~ 72 (100)
T 4hci_A 10 IASAKVIEVELN-DDYFNPN------VITIPINESTTLLLKNKGKSEHTFTIK----KLGI------DVVVESGKEKNIT 72 (100)
T ss_dssp ----CCEEEEEE-TTEEESS------EEEECTTSCEEEEEEECSSSCEEEEEG----GGTE------EEEECTTCEEEEE
T ss_pred CCCCcEEEEEEE-CCEEeCC------EEEECCCCEEEEEEEcCCCceEEEEEe----cCCc------ceeecCCcceeEE
Confidence 344555555422 2455553 6899999999998753 24777652 2110 01112233 35
Q ss_pred EEeecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 96 VKLVKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 96 v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
++++++|.|.|+|. .||..||+..|.|+
T Consensus 73 ~t~~~~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 73 VKPKSAGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp ECCCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EecccCceEEEECc--cccCCCCEEEEEEC
Confidence 66689999999997 69999999999985
No 24
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.33 E-value=1.1e-06 Score=65.31 Aligned_cols=80 Identities=20% Similarity=0.139 Sum_probs=56.1
Q ss_pred cCCCCCCCCCCcccccCCCeEEecCEEEEEEccCCCcEEEeCCcccCCCCCCCCCCCc-cCCC-CcEEEeecCceEEEEc
Q 030729 31 GGSQGWVESADLNSWASGQTFKVGDQIVFKYTPGLHSVVELPSESAYKSCDLGTAKDS-MNSG-NDVVKLVKPGTRYFAC 108 (172)
Q Consensus 31 G~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~~H~V~~V~~~~~y~~C~~~~~~~~-~~~G-~~~v~l~~~G~~YFiC 108 (172)
|++.+..+.++ ..++++||+|.|.+....|+|+.... +-..+.... ...| ...++++++|.|+|+|
T Consensus 11 g~~g~~~F~P~------~i~V~~GdtV~f~n~d~~H~v~~~~~------~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C 78 (122)
T 2ux6_A 11 GKDGAMVFEPA------SLKVAPGDTVTFIPTDKGHNVETIKG------MIPDGAEAFKSKINENYKVTFTAPGVYGVKC 78 (122)
T ss_dssp ETTEEEEEESS------EEEECTTEEEEEEESSSSCCCEECTT------CSCTTCCCCBCCTTCCEEEEECSCEEEEEEE
T ss_pred CCCCCceEeCC------EEEECCCCEEEEEECCCCcEEEEccc------ccCCCcceeecCCCCEEEEEeCCCEEEEEEe
Confidence 55544666653 67999999999999876899987431 111111111 0123 3578999999999999
Q ss_pred CCCCCccCCCeEEEEecC
Q 030729 109 GTSGHCEQGMKVKITTFS 126 (172)
Q Consensus 109 ~~~~HC~~GmKl~I~V~~ 126 (172)
.. |+. |+..|.|.+
T Consensus 79 ~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 79 TP--HPF--MVGVVQVGD 92 (122)
T ss_dssp TT--EEE--EEEEEEESS
T ss_pred CC--Ccc--CEEEEEEeC
Confidence 96 887 999999974
No 25
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.31 E-value=1.6e-06 Score=65.12 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCCCCCCcccccCCCeEEecCEEEEEEccC-CCcEEEeCCccc----CCCCCCCCCCCccCCCC-cEEEeecCceEEEEc
Q 030729 35 GWVESADLNSWASGQTFKVGDQIVFKYTPG-LHSVVELPSESA----YKSCDLGTAKDSMNSGN-DVVKLVKPGTRYFAC 108 (172)
Q Consensus 35 GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~-~H~V~~V~~~~~----y~~C~~~~~~~~~~~G~-~~v~l~~~G~~YFiC 108 (172)
++.+.|+ ..++++||+|.|..... .|+|...+. .. |+ ......|. ..++++++|.|.|+|
T Consensus 54 ~~~F~P~------~i~V~~GdtV~~~N~d~~~H~v~~~~~-~~g~~~~~-------s~~l~pG~t~~~tF~~~G~y~y~C 119 (132)
T 3c75_A 54 KMKYLTP------EVTIKAGETVYWVNGEVMPHNVAFKKG-IVGEDAFR-------GEMMTKDQAYAITFNEAGSYDYFC 119 (132)
T ss_dssp TTEESSS------EEEECTTCEEEEEECSSSCBCCEECTT-TSSSSCEE-------CCCBCTTEEEEEEECSCEEEEEEC
T ss_pred eeEEeCC------EEEECCCCEEEEEECCCCceEEEEeCC-CCCccccc-------ccccCCCCEEEEEcCCCEEEEEEe
Confidence 4666653 68999999999986654 699987433 10 11 01122333 478889999999999
Q ss_pred CCCCCccCCCeEEEEec
Q 030729 109 GTSGHCEQGMKVKITTF 125 (172)
Q Consensus 109 ~~~~HC~~GmKl~I~V~ 125 (172)
+. |. ||+..|.|.
T Consensus 120 ~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 120 TP--HP--FMRGKVIVE 132 (132)
T ss_dssp SS--CT--TCEEEEEEC
T ss_pred CC--Cc--CCEEEEEEC
Confidence 96 65 999999984
No 26
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.29 E-value=3.5e-06 Score=59.42 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=58.8
Q ss_pred EEEecCC-CCCCCCCCcccccCCCeEEecCEEEEEEcc-CCCcEEEeCCcccCCCCCCC-------CCCCccCCCC-cEE
Q 030729 27 QHTVGGS-QGWVESADLNSWASGQTFKVGDQIVFKYTP-GLHSVVELPSESAYKSCDLG-------TAKDSMNSGN-DVV 96 (172)
Q Consensus 27 ~~~VG~~-~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~-~~H~V~~V~~~~~y~~C~~~-------~~~~~~~~G~-~~v 96 (172)
+..+|.+ .+..+.+. ..+++.||+|.|.... ..|++..-.. ...+... ........|. ..+
T Consensus 4 ~V~~~~~~~~~~f~p~------~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~g~~~~~~~~~~~~i~pG~~~~~ 74 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA------NVTVHPGDTVKWVNNKLPPHNILFDDK---QVPGASKELADKLSHSQLMFSPGESYEI 74 (105)
T ss_dssp EEEESCTTCCSCEESS------EEEECTTEEEEEEECSSCCEEEEECTT---SSGGGCHHHHHHHCEEEEECSTTCEEEE
T ss_pred EEEEeecCCccEEeCC------EEEEcCCCEEEEEECCCCCCeEEEeCC---CCCcccccccccccccccccCCCCeEEE
Confidence 4556643 56777653 6789999999998664 4799987422 1122100 0001123343 467
Q ss_pred Ee---ecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 97 KL---VKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 97 ~l---~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
++ +++|+|+|.|. .|+..||+..|.|.
T Consensus 75 ~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 75 TFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 77 78999999999 79999999999985
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.25 E-value=9.1e-06 Score=61.16 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=59.2
Q ss_pred EEEecCCCCCCCCCCcccccCCCeEEec-CEEEEEEcc-C-------CCcEEEeCCcc----------------cCCCCC
Q 030729 27 QHTVGGSQGWVESADLNSWASGQTFKVG-DQIVFKYTP-G-------LHSVVELPSES----------------AYKSCD 81 (172)
Q Consensus 27 ~~~VG~~~GW~~~~nY~~Wa~~~~f~vG-DtLvF~y~~-~-------~H~V~~V~~~~----------------~y~~C~ 81 (172)
+..|+.+..+.+.++ ..+++.| |++.|.+.+ + .|+++..+. . +|..=+
T Consensus 4 ~v~i~~~d~m~F~p~------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~-~~~~~~~~~~m~~~~~~~~v~~~ 76 (129)
T 1cuo_A 4 ETTVTSGDTMTYSTR------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKS-ADVGDVAKEGAHAGADNNFVTPG 76 (129)
T ss_dssp EEEEEECSSSCCSCS------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEG-GGHHHHHHHHHTTCGGGTTSCTT
T ss_pred EEEEEeCCCceEccC------eEEEcCCCeEEEEEEEECCCCcccccccceEEecC-cchhhhHHHhhhccccccccccc
Confidence 445555556787764 6799999 977777753 2 399987654 2 221111
Q ss_pred CCCCC---CccCCCC-cEEEee-----cCceEEEEcCCCCCccCCCeEEEEec
Q 030729 82 LGTAK---DSMNSGN-DVVKLV-----KPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 82 ~~~~~---~~~~~G~-~~v~l~-----~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
..+.+ .....|. ..++++ ++|.|+|+|++++|=+ |||..|.|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 77 DKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 11111 1223443 345554 7999999999999999 999999985
No 28
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.24 E-value=3.2e-06 Score=66.56 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=60.3
Q ss_pred eEEEecCCCCCCCCCCcccccCCCeE-EecCEEEEEEcc--C------CCcEEEeCCccc---------------CCCCC
Q 030729 26 AQHTVGGSQGWVESADLNSWASGQTF-KVGDQIVFKYTP--G------LHSVVELPSESA---------------YKSCD 81 (172)
Q Consensus 26 ~~~~VG~~~GW~~~~nY~~Wa~~~~f-~vGDtLvF~y~~--~------~H~V~~V~~~~~---------------y~~C~ 81 (172)
.++.|+.+.++.+.++ ..++ +.||++.|.+.+ . .|+++..+. .+ |..=+
T Consensus 43 ~~V~I~~~d~m~F~P~------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~-~~~~~v~~~~m~~~~~~~v~~~ 115 (167)
T 3ay2_A 43 CAATVESNDNMQFNTK------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKA-EDMDGVFKDGVGAADTDYVKPD 115 (167)
T ss_dssp CEEEEEECTTSCBSCS------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEG-GGHHHHHHHHGGGGGGTTSCTT
T ss_pred eEEEEEeCCCceEecc------eEEEecCCCEEEEEEEECCCCccccccceEEeccC-cchhhhHHHhhhcccccccccc
Confidence 4666776667888764 5677 789987777653 2 299987654 22 21101
Q ss_pred CCCCC---CccCCCC-cEEEee----cCceEEEEcCCCCCccCCCeEEEEec
Q 030729 82 LGTAK---DSMNSGN-DVVKLV----KPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 82 ~~~~~---~~~~~G~-~~v~l~----~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
..+.+ .....|. ..++++ ++|.|+|+|++++|=+ |||..|+|.
T Consensus 116 d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 116 DARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp CTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 11111 1223344 356665 7999999999999999 999999986
No 29
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=98.17 E-value=4.8e-06 Score=59.66 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=57.2
Q ss_pred ccceEEEecCCCCCCCCCCcccccCCCeEEecCEEEEEEccC-CCcEEEeCCccc----CCCCCCCCCCCccCCCC-cEE
Q 030729 23 ASAAQHTVGGSQGWVESADLNSWASGQTFKVGDQIVFKYTPG-LHSVVELPSESA----YKSCDLGTAKDSMNSGN-DVV 96 (172)
Q Consensus 23 a~a~~~~VG~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~-~H~V~~V~~~~~----y~~C~~~~~~~~~~~G~-~~v 96 (172)
+.+.++.|.- .+|.+.+. ..++++||+|.|..... .|+|..... .+ |+.. ....|. ..+
T Consensus 16 ~~a~~~~V~~-~~~~F~P~------~i~v~~Gd~V~~~N~d~~~H~v~~~~~-~~g~~~~~~~-------~~~pG~~~~~ 80 (105)
T 2ov0_A 16 VADGAIVVDI-AKMKYETP------ELHVKVGDTVTWINREAMPHNVHFVAG-VLGEAALKGP-------MMKKEQAYSL 80 (105)
T ss_dssp CCTTCEEEEE-ETTEESSS------EEEECTTCEEEEEECSSSCBCCEECTT-TSSSSCEECC-------CBCTTEEEEE
T ss_pred CCCcCEEEEE-eecEEcCC------EEEECCCCEEEEEECCCCCEEEEEcCC-CCCccccccc-------ccCCCCEEEE
Confidence 3455666653 35777654 68999999999987654 799976432 11 1111 122333 478
Q ss_pred EeecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 97 KLVKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 97 ~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+++++|.|+|+|.. |- ||+..|.|.
T Consensus 81 tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 81 TFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 88999999999997 43 999999884
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.17 E-value=5.8e-06 Score=59.46 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=56.2
Q ss_pred cceEEEecCCCCCCCCCCcccccCCCeEEecCEEEEEEccC-CCcEEEeCCccc----CCCCCCCCCCCccCCCC-cEEE
Q 030729 24 SAAQHTVGGSQGWVESADLNSWASGQTFKVGDQIVFKYTPG-LHSVVELPSESA----YKSCDLGTAKDSMNSGN-DVVK 97 (172)
Q Consensus 24 ~a~~~~VG~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~-~H~V~~V~~~~~----y~~C~~~~~~~~~~~G~-~~v~ 97 (172)
.+.++.|.-. ++.+.++ ..++++||+|.|..... .|+|..... .. |+ ......|. ..++
T Consensus 18 ~~~~~~V~~~-~~~F~P~------~i~V~~G~tV~~~N~d~~~H~v~~~~~-~~~~~~~~-------s~~l~~g~~~~~t 82 (106)
T 1id2_A 18 PADAVVVGIE-KMKYLTP------EVTIKAGETVYWVNGEVMPHNVAFKKG-IVGEDAFR-------GEMMTKDQAYAIT 82 (106)
T ss_dssp CTTCEEEEEE-TTEESSS------EEEECTTCEEEEEECSSSCBCCEECTT-TSSSSCEE-------CCCBCTTEEEEEE
T ss_pred CCccEEEEEE-ecEEeCC------EEEECCCCEEEEEECCCCcEEEEEeCC-CCCccccc-------ccccCCCCEEEEE
Confidence 4445555433 4666653 68999999999986654 699976432 10 11 01122333 4788
Q ss_pred eecCceEEEEcCCCCCccCCCeEEEEec
Q 030729 98 LVKPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 98 l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
++++|.|.|+|.. |. ||+..|.|.
T Consensus 83 f~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 83 FNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp ECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred eCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 8999999999996 76 999999984
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.02 E-value=2.3e-05 Score=58.90 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=56.5
Q ss_pred EEecCCCCCCCCCCcccccCCCeE-EecCEEEEEEcc--C------CCcEEEeCCcc----------------cCCCCCC
Q 030729 28 HTVGGSQGWVESADLNSWASGQTF-KVGDQIVFKYTP--G------LHSVVELPSES----------------AYKSCDL 82 (172)
Q Consensus 28 ~~VG~~~GW~~~~nY~~Wa~~~~f-~vGDtLvF~y~~--~------~H~V~~V~~~~----------------~y~~C~~ 82 (172)
..|+.+.++.+.++ ..++ +.||++.|.|.+ . .|+++..+. . +|..=+.
T Consensus 4 v~v~~~d~m~F~p~------~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~-~~~~~~~~~~m~~~~~~~~~~~~~ 76 (128)
T 2iaa_C 4 VSIEGNDSMQFNTK------SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKK-SDESAVATDGMKAGLNNDYVKAGD 76 (128)
T ss_dssp EEEEECTTSCBSCS------EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEET-THHHHHHHHHHHHCGGGTTSCTTC
T ss_pred EEEEeCCCceEecC------EEEEecCCcEEEEEEEECCCCcccCCCceEEEccc-cchhhHHHhhhhcccccccccccc
Confidence 44555557888764 4556 669987777753 2 299987643 2 2221111
Q ss_pred CCCC---CccCCCC-cEEEee----cCc-eEEEEcCCCCCccCCCeEEEEec
Q 030729 83 GTAK---DSMNSGN-DVVKLV----KPG-TRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 83 ~~~~---~~~~~G~-~~v~l~----~~G-~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
.+.+ .....|. ..++++ ++| +|.|+|++++|=+ |||..|+|.
T Consensus 77 ~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 77 ERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred chhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 1111 1223444 356655 678 5999999999999 999999986
No 32
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.98 E-value=2.3e-05 Score=58.91 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=56.0
Q ss_pred EEEecCCCCCCCCCCcccccCCCeE-EecCEEEEEEcc--C------CCcEEEeCCcc----------------cCCCCC
Q 030729 27 QHTVGGSQGWVESADLNSWASGQTF-KVGDQIVFKYTP--G------LHSVVELPSES----------------AYKSCD 81 (172)
Q Consensus 27 ~~~VG~~~GW~~~~nY~~Wa~~~~f-~vGDtLvF~y~~--~------~H~V~~V~~~~----------------~y~~C~ 81 (172)
++.|+.+.+..+.++ ..++ +.||++.|.+.+ . .|+++..+. . +|..=+
T Consensus 4 ~v~v~~~d~m~F~p~------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T 2ccw_A 4 EATVESNDAMQYNVK------EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKD-ADKQAVATDGMGAGLAQDYVKAG 76 (129)
T ss_dssp EEEEEECTTSCBSCS------EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEG-GGHHHHHHHHHHHCGGGTTSCTT
T ss_pred EEEEEeCCCccEecc------eEEEecCCCEEEEEEEECCCcccccCcceEEEcCc-cchhhhHHHhhhhcccccccccc
Confidence 455665556777764 4555 669977777753 2 299987643 2 222111
Q ss_pred CCCCC---CccCCCC-cEEEee----cCce-EEEEcCCCCCccCCCeEEEEec
Q 030729 82 LGTAK---DSMNSGN-DVVKLV----KPGT-RYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 82 ~~~~~---~~~~~G~-~~v~l~----~~G~-~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
..+.+ .....|. ..++++ ++|. |+|+|++++|=+ |||..|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 77 DTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 11111 1123444 355554 5665 999999999999 999999986
No 33
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.97 E-value=2.1e-05 Score=59.08 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=57.5
Q ss_pred EEEecCCCCCCCCCCcccccCCCeE-EecCEEEEEEcc--CC------CcEEEeCCccc----------------CCCCC
Q 030729 27 QHTVGGSQGWVESADLNSWASGQTF-KVGDQIVFKYTP--GL------HSVVELPSESA----------------YKSCD 81 (172)
Q Consensus 27 ~~~VG~~~GW~~~~nY~~Wa~~~~f-~vGDtLvF~y~~--~~------H~V~~V~~~~~----------------y~~C~ 81 (172)
+..|+.+.++.+.++ ..++ +.||++.|.|.+ .. |+++..+. .+ |..=+
T Consensus 4 ~v~v~~~d~m~F~p~------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~-~~~~~~~~~~m~~~~~~~~~~~~ 76 (128)
T 1nwp_A 4 KVTVDSTDQMSFNTK------DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKE-ADMQPIATDGLSAGIDKQYLKDG 76 (128)
T ss_dssp EEEEEECTTSCBSCS------EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEG-GGHHHHHHHHTTTCGGGTTSCTT
T ss_pred EEEEEeCCCccEecC------EEEEecCCCEEEEEEEECCCCcccCCCceEEEccc-cchhhHHHHHhhccccccccccc
Confidence 455665557888874 5677 789988777753 22 99987543 21 11101
Q ss_pred CCCCC---CccCCCC-cEEEee----cCce-EEEEcCCCCCccCCCeEEEEec
Q 030729 82 LGTAK---DSMNSGN-DVVKLV----KPGT-RYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 82 ~~~~~---~~~~~G~-~~v~l~----~~G~-~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
..+.+ .....|. ..++++ ++|. |.|+|++++|=+ |||..|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 77 DARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 11101 1223444 356654 4676 999999999999 999999984
No 34
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.79 E-value=8.7e-06 Score=64.82 Aligned_cols=80 Identities=11% Similarity=0.229 Sum_probs=53.6
Q ss_pred eEEecCEEEEE---Ecc------CCCcEEEeCCcccCCCCCCCCCC-Ccc--C--CCCcEEEee-------------cCc
Q 030729 50 TFKVGDQIVFK---YTP------GLHSVVELPSESAYKSCDLGTAK-DSM--N--SGNDVVKLV-------------KPG 102 (172)
Q Consensus 50 ~f~vGDtLvF~---y~~------~~H~V~~V~~~~~y~~C~~~~~~-~~~--~--~G~~~v~l~-------------~~G 102 (172)
.+++||.|-+- |+. +.+.|++|++ ++|+.|+..... ..+ . .+...+++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~-~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg 103 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDK-DQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKN 103 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECH-HHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTT
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECH-HHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence 44569999884 432 3488999999 999999986322 222 2 233344432 467
Q ss_pred -eEEEEcCCC-----------CCccC-CCeEEEEecCCCCC
Q 030729 103 -TRYFACGTS-----------GHCEQ-GMKVKITTFSGTAP 130 (172)
Q Consensus 103 -~~YFiC~~~-----------~HC~~-GmKl~I~V~~~~~~ 130 (172)
.|||||+-. ++|.. +|||.|.|......
T Consensus 104 ~~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred CceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 699999853 79995 99999999876444
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.57 E-value=0.00012 Score=58.08 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=60.5
Q ss_pred ccceEEEecCCCCCCCCCC-cccccCCCeEEecCEEEEE---Ecc-------CCCcEEEeCCcccCCCCCCCCCC-Ccc-
Q 030729 23 ASAAQHTVGGSQGWVESAD-LNSWASGQTFKVGDQIVFK---YTP-------GLHSVVELPSESAYKSCDLGTAK-DSM- 89 (172)
Q Consensus 23 a~a~~~~VG~~~GW~~~~n-Y~~Wa~~~~f~vGDtLvF~---y~~-------~~H~V~~V~~~~~y~~C~~~~~~-~~~- 89 (172)
+.+..|.| -|+..-. +..=.-...+++||.|-+- |+. +...+++|++ ++|+.|+..... ..+
T Consensus 29 ~~~~r~~V----yWNSsNp~F~~~~~~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~-e~y~~C~~~~~~~~~~~ 103 (177)
T 2x11_B 29 AVADRYAV----YWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNF-DGYSACDHTSKGFKRWE 103 (177)
T ss_dssp -CCSEEEE----ECSTTCHHHHTSCCEEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECH-HHHHHTCCTTTEEEEEE
T ss_pred ccCccCce----EcCCCCcCccCCCceEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECH-HHhccccCCCCCcEEEE
Confidence 45666665 5886510 1100013678899999884 542 3678899999 999999875532 111
Q ss_pred -C-----CCCcEEEee-------------cCc-eEEEEcCC-----CCCccCCCeEEEEecCCCC
Q 030729 90 -N-----SGNDVVKLV-------------KPG-TRYFACGT-----SGHCEQGMKVKITTFSGTA 129 (172)
Q Consensus 90 -~-----~G~~~v~l~-------------~~G-~~YFiC~~-----~~HC~~GmKl~I~V~~~~~ 129 (172)
+ .|+.++++. ++| .||||++- ++-| |||.|.|.+...
T Consensus 104 C~~P~~p~~~~kftikFQ~FSP~p~G~EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 104 CNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp ECCTTCSSSSCEEEEECCSSCSSTTCCCCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred eCCCCCCCCCeEEEEEEEEcCCCCCCccccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 1 134444331 477 58889762 2346 999999987643
No 36
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.34 E-value=0.00027 Score=56.37 Aligned_cols=104 Identities=17% Similarity=0.283 Sum_probs=58.4
Q ss_pred cccceEEEecCCCCCCCC-CCcccccCCCeEEecCEEEEE---Ecc--------CCCcEEEeCCcccCCCCCCCC-CCCc
Q 030729 22 EASAAQHTVGGSQGWVES-ADLNSWASGQTFKVGDQIVFK---YTP--------GLHSVVELPSESAYKSCDLGT-AKDS 88 (172)
Q Consensus 22 ~a~a~~~~VG~~~GW~~~-~nY~~Wa~~~~f~vGDtLvF~---y~~--------~~H~V~~V~~~~~y~~C~~~~-~~~~ 88 (172)
.+++..|.| -|+.. +-+..=--...+++||.|-+- |+. +...+++|++ ++|+.|+... +...
T Consensus 26 ~~sa~rh~V----yWNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~-e~y~sC~~~~~~~~~ 100 (182)
T 3czu_B 26 MDAADRHTV----FWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEH-EEYQLCQPQSKDQVR 100 (182)
T ss_dssp ---CCEEEE----ECSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECH-HHHHHTCCCCGGGEE
T ss_pred hhhccccce----EEcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECH-HHhhhccCCCCCcEE
Confidence 345566665 48764 111100113678899999884 432 2467899998 9999999764 2211
Q ss_pred c------C-CCCcEEEee-------------cCc-eEEEEcC----CCCCccCCCeEEEEecCCCCCCCC
Q 030729 89 M------N-SGNDVVKLV-------------KPG-TRYFACG----TSGHCEQGMKVKITTFSGTAPSTP 133 (172)
Q Consensus 89 ~------~-~G~~~v~l~-------------~~G-~~YFiC~----~~~HC~~GmKl~I~V~~~~~~~~p 133 (172)
+ . .|..+|++. ++| .||||++ .++.| ||+.|.|......+|+
T Consensus 101 ~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~~~P~ 167 (182)
T 3czu_B 101 WQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKITHSPQ 167 (182)
T ss_dssp EEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC-------
T ss_pred EEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCCCCCC
Confidence 1 1 233333321 477 5889986 35666 9999999877654443
No 37
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=97.27 E-value=0.00026 Score=54.34 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=51.3
Q ss_pred CeEEecCEEEEE---Ecc---------CCCcEEEeCCcccCCCCCCCC-CCCcc----CCCCcEEEee------------
Q 030729 49 QTFKVGDQIVFK---YTP---------GLHSVVELPSESAYKSCDLGT-AKDSM----NSGNDVVKLV------------ 99 (172)
Q Consensus 49 ~~f~vGDtLvF~---y~~---------~~H~V~~V~~~~~y~~C~~~~-~~~~~----~~G~~~v~l~------------ 99 (172)
..+++||.|-+- |+. +...+++|++ ++|+.|+... +...+ ..++.++++.
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~-~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~E 100 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEG-AQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHE 100 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECS-HHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECH-HHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCcee
Confidence 467789999884 443 3567999999 9999999863 22222 1233333221
Q ss_pred -cCc-eEEEEcCC-----------CCCccC-CCeEEEEec
Q 030729 100 -KPG-TRYFACGT-----------SGHCEQ-GMKVKITTF 125 (172)
Q Consensus 100 -~~G-~~YFiC~~-----------~~HC~~-GmKl~I~V~ 125 (172)
++| .||||++- +|-|.. .|||.|.|.
T Consensus 101 F~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 101 FRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CCTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eeCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 466 58899973 467985 899999986
No 38
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.20 E-value=0.00026 Score=50.64 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCeEEecCEEEEEEccC---CCcEEEeCCcccCCCCCCCCCCCccCCCCc-EE--EeecCceEEEEcCCCCCccC-CCeE
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVELPSESAYKSCDLGTAKDSMNSGND-VV--KLVKPGTRYFACGTSGHCEQ-GMKV 120 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~-~v--~l~~~G~~YFiC~~~~HC~~-GmKl 120 (172)
..+++.||++.|.+.+. .|++.. .+ +.. ......|.. .+ +.+++|.|+|.|.. ||.. +|+.
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i-~~---~~~------~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g 106 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSI-DA---FGV------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG 106 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEE-GG---GTE------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEE-cC---CCc------eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence 67899999999987642 588764 22 210 111233432 44 44899999999995 6753 4999
Q ss_pred EEEec
Q 030729 121 KITTF 125 (172)
Q Consensus 121 ~I~V~ 125 (172)
.|.|.
T Consensus 107 ~i~V~ 111 (112)
T 1iby_A 107 TLNVV 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99985
No 39
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=97.16 E-value=0.00053 Score=52.45 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=50.9
Q ss_pred CeEEecCEEEEE---Ecc-------CCCcEEEeCCcccCCCCCCCCCC-Ccc--C-----CCCcEEEee-----------
Q 030729 49 QTFKVGDQIVFK---YTP-------GLHSVVELPSESAYKSCDLGTAK-DSM--N-----SGNDVVKLV----------- 99 (172)
Q Consensus 49 ~~f~vGDtLvF~---y~~-------~~H~V~~V~~~~~y~~C~~~~~~-~~~--~-----~G~~~v~l~----------- 99 (172)
..+++||.|-+- |+. +...+++|++ ++|+.|+..... ..+ + .++.++++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~-~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~ 101 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNF-DGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 101 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECH-HHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECH-HHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence 568899999884 442 3577899999 999999875532 112 1 134344331
Q ss_pred --cCc-eEEEEcCC-----CCCccCCCeEEEEecCCC
Q 030729 100 --KPG-TRYFACGT-----SGHCEQGMKVKITTFSGT 128 (172)
Q Consensus 100 --~~G-~~YFiC~~-----~~HC~~GmKl~I~V~~~~ 128 (172)
++| .||||++- ++-| |||.|.|.+..
T Consensus 102 EF~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 102 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred eecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 477 58889762 3446 99999998654
No 40
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.11 E-value=0.0014 Score=49.39 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=46.1
Q ss_pred CCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCccCCC---CcEEEeecCceEEEEcCCCCCcc---CCCe
Q 030729 48 GQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDSMNSG---NDVVKLVKPGTRYFACGTSGHCE---QGMK 119 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~YFiC~~~~HC~---~GmK 119 (172)
..++.+||.+.|...+. .|++.. .+ +.. ......| ...++++++|.|+|+|+. +|. .+|+
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~i-p~---~~~------k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~ 128 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHV-EG---TNI------NVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF 128 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEE-TT---SSC------EEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEe-cC---CCc------eeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCE
Confidence 78999999999998653 577754 22 110 0011223 247888999999999985 454 6899
Q ss_pred EEEEec
Q 030729 120 VKITTF 125 (172)
Q Consensus 120 l~I~V~ 125 (172)
..|.|.
T Consensus 129 g~v~V~ 134 (135)
T 2cua_A 129 GTIVVK 134 (135)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 41
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.89 E-value=0.00087 Score=51.30 Aligned_cols=76 Identities=12% Similarity=0.219 Sum_probs=50.6
Q ss_pred eEEecCEEEEEEc---c------CCCcEEEeCCcccCCCCCCCC-CCCcc----CCCCcEEEee-------------cCc
Q 030729 50 TFKVGDQIVFKYT---P------GLHSVVELPSESAYKSCDLGT-AKDSM----NSGNDVVKLV-------------KPG 102 (172)
Q Consensus 50 ~f~vGDtLvF~y~---~------~~H~V~~V~~~~~y~~C~~~~-~~~~~----~~G~~~v~l~-------------~~G 102 (172)
.+++||.|-+--. . +...+++|++ ++|+.|+... +...+ ..+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~-~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g 102 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDK-DQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKN 102 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECH-HHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTT
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECH-HHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence 4457999988543 2 2578999999 9999999863 22222 1233333332 567
Q ss_pred -eEEEEcCC-----------CCCccC-CCeEEEEecC
Q 030729 103 -TRYFACGT-----------SGHCEQ-GMKVKITTFS 126 (172)
Q Consensus 103 -~~YFiC~~-----------~~HC~~-GmKl~I~V~~ 126 (172)
.||||++- +|-|.. .|||.|.|..
T Consensus 103 ~~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 103 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred CceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 58889873 357984 8999999864
No 42
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=96.22 E-value=0.047 Score=40.81 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=51.7
Q ss_pred EEecCCCCCCCCCCcccccCCCeEEe-cCEEEEEEcc-C-------CCcEEEeCCc---------------ccCCCCCCC
Q 030729 28 HTVGGSQGWVESADLNSWASGQTFKV-GDQIVFKYTP-G-------LHSVVELPSE---------------SAYKSCDLG 83 (172)
Q Consensus 28 ~~VG~~~GW~~~~nY~~Wa~~~~f~v-GDtLvF~y~~-~-------~H~V~~V~~~---------------~~y~~C~~~ 83 (172)
..|-.+.+..+.++ ..++.. |+++.|.+.+ + .||++..... .+|-.=+..
T Consensus 5 v~i~~~d~M~F~p~------~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~ 78 (125)
T 3fsa_A 5 VDIQGNDQMQFNTN------AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDS 78 (125)
T ss_dssp EEEEBCTTSCBSCS------EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCT
T ss_pred EEEEccCCcEEecC------EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCc
Confidence 34444446777764 556654 9999887763 3 3999987430 122211111
Q ss_pred CCC---CccCCCC-cEEEee-----cCceEEEEcCCCCCccCCCeEEEEec
Q 030729 84 TAK---DSMNSGN-DVVKLV-----KPGTRYFACGTSGHCEQGMKVKITTF 125 (172)
Q Consensus 84 ~~~---~~~~~G~-~~v~l~-----~~G~~YFiC~~~~HC~~GmKl~I~V~ 125 (172)
+-+ .....|. ..++++ ++|.|-|+|+ +|= |||..|.|.
T Consensus 79 ~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 79 RVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp TCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred cceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 111 1223454 356555 5699999999 786 999999884
No 43
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.95 E-value=0.01 Score=46.14 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=48.6
Q ss_pred CeEEecCEEEEE---Ec--------cCCCcEEEeCCcccCCCCCCCCCCC-cc------C-CCCcEEEee----------
Q 030729 49 QTFKVGDQIVFK---YT--------PGLHSVVELPSESAYKSCDLGTAKD-SM------N-SGNDVVKLV---------- 99 (172)
Q Consensus 49 ~~f~vGDtLvF~---y~--------~~~H~V~~V~~~~~y~~C~~~~~~~-~~------~-~G~~~v~l~---------- 99 (172)
..+++||.|-+- |+ .+...+++|++ ++|+.|+...... .+ . .|..++++.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~-~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G 110 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNG-EGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLG 110 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECH-HHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTS
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECH-HHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCC
Confidence 568899999885 43 22345889999 9999999865321 11 1 133333321
Q ss_pred ---cCc-eEEEEcCC-----CCCccCCCeEEEEecCCC
Q 030729 100 ---KPG-TRYFACGT-----SGHCEQGMKVKITTFSGT 128 (172)
Q Consensus 100 ---~~G-~~YFiC~~-----~~HC~~GmKl~I~V~~~~ 128 (172)
++| .||||++- ++-| |||.|.|.+..
T Consensus 111 ~EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 111 FEFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 467 58899963 3456 58888887654
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=95.90 E-value=0.013 Score=51.00 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=52.8
Q ss_pred CCCeEEecCEEEEEEccC---CCcEEEeCCcccCCCCCCCCCCCccCCCCcEEEeecCceEEEEcCCCCCccCCCeEEEE
Q 030729 47 SGQTFKVGDQIVFKYTPG---LHSVVELPSESAYKSCDLGTAKDSMNSGNDVVKLVKPGTRYFACGTSGHCEQGMKVKIT 123 (172)
Q Consensus 47 ~~~~f~vGDtLvF~y~~~---~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~ 123 (172)
...+++.||+|+|++.+. .|++.. ........|. +..-.+-...|+++++|+++|.|.+++|=..||+..|.
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~-~g~~~~~~~~----i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~ 129 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVV-DQYAARSAIV----NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQ 129 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEE-TTTTEECCCB----CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEE-ccCCccccee----cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEE
Confidence 468999999999988643 377754 2212112232 21111112356668899999999999998889999999
Q ss_pred ecCCCC
Q 030729 124 TFSGTA 129 (172)
Q Consensus 124 V~~~~~ 129 (172)
|....+
T Consensus 130 V~~~~~ 135 (447)
T 2dv6_A 130 VLPGNR 135 (447)
T ss_dssp EESSCC
T ss_pred EeCCcc
Confidence 987544
No 45
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=95.33 E-value=0.04 Score=43.01 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=45.2
Q ss_pred CCCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCc-cCCCC---cEEEeecCceEEEEcCC-CCCccCCCe
Q 030729 47 SGQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDS-MNSGN---DVVKLVKPGTRYFACGT-SGHCEQGMK 119 (172)
Q Consensus 47 ~~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~-~~~G~---~~v~l~~~G~~YFiC~~-~~HC~~GmK 119 (172)
+...+.+|+.+.|...+. .|+... ++ +. ++. ...|. ..++.+++|.||++|+. -|+--.+|+
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~I-P~---lg-------ik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~ 161 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHV-EG---TN-------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMF 161 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEE-TT---SS-------CEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEE-CC---CC-------eEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCE
Confidence 467899999999988764 466654 22 21 111 11233 46788999999999993 233334699
Q ss_pred EEEEec
Q 030729 120 VKITTF 125 (172)
Q Consensus 120 l~I~V~ 125 (172)
..|.|.
T Consensus 162 g~V~V~ 167 (168)
T 3s8f_B 162 GTIVVK 167 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999986
No 46
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.20 E-value=0.022 Score=52.54 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=46.6
Q ss_pred CCeEEecCEEEEEEccC------CCcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCC---CCCcc
Q 030729 48 GQTFKVGDQIVFKYTPG------LHSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGT---SGHCE 115 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~------~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~---~~HC~ 115 (172)
..++++||++.|...+. .|++..- . +. .......|. ..|+++++|.|||.|.. ..|
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip-~---~g------v~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMG-N---YG------VAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEET-T---TT------EEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEec-C---CC------cceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 57899999999997652 5777652 2 11 001112333 36788999999999983 345
Q ss_pred CCCeEEEEecCC
Q 030729 116 QGMKVKITTFSG 127 (172)
Q Consensus 116 ~GmKl~I~V~~~ 127 (172)
.||+..|.|.+.
T Consensus 582 ~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 MEMRGRMLVEPK 593 (595)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 499999999854
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.09 E-value=0.026 Score=52.33 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCCCCCCcccccCCCeEEecCEEEEEEccC------CCcEEEeCCcccCCCCCCCCCCC-ccCCCC---cEEEeecCceE
Q 030729 35 GWVESADLNSWASGQTFKVGDQIVFKYTPG------LHSVVELPSESAYKSCDLGTAKD-SMNSGN---DVVKLVKPGTR 104 (172)
Q Consensus 35 GW~~~~nY~~Wa~~~~f~vGDtLvF~y~~~------~H~V~~V~~~~~y~~C~~~~~~~-~~~~G~---~~v~l~~~G~~ 104 (172)
.|.+.++ ..++.+||+|.|...+. .|+...- . +. +. ....|. ..++.++||.|
T Consensus 552 ~~~FsP~------eI~VP~GdtVrfiLTN~D~veDViHSF~IP-s---lG-------IK~DaiPGrtnsvtFtadkPGvY 614 (638)
T 3sbq_A 552 APAFGVQ------EFTVKQGDEVTVTITNIDQIEDVSHGFVVV-N---HG-------VSMEISPQQTSSITFVADKPGLH 614 (638)
T ss_dssp TTEESCC------EEEEETTCEEEEEEEECCCSTTCCEEEEET-T---TT-------EEEEECTTCEEEEEEECCSCEEE
T ss_pred cccccCC------EEEEecCceeEEEEecCCcCCCceeeeEec-C---CC-------ceeeeCCCCeEEEEEEcCCCEEE
Confidence 3555553 68899999999987762 5887652 1 21 11 112333 36778999999
Q ss_pred EEEcCCCCCccC---CCeEEEEecC
Q 030729 105 YFACGTSGHCEQ---GMKVKITTFS 126 (172)
Q Consensus 105 YFiC~~~~HC~~---GmKl~I~V~~ 126 (172)
||+|+. .|-. +|+..|.|.+
T Consensus 615 ~y~CSE--~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 615 WYYCSW--FCHALHMEMVGRMMVEP 637 (638)
T ss_dssp EEECCS--CCSTTCTTCEEEEEEEC
T ss_pred EEECCC--cCCCCcccceEEEEEec
Confidence 999995 6665 4999999975
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=93.96 E-value=0.059 Score=40.71 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=46.9
Q ss_pred CeEEecCEEEE---EEcc--------CCCcEEEeCCcccCCCCCCCC-CCCcc------C-CCCcEEEee----------
Q 030729 49 QTFKVGDQIVF---KYTP--------GLHSVVELPSESAYKSCDLGT-AKDSM------N-SGNDVVKLV---------- 99 (172)
Q Consensus 49 ~~f~vGDtLvF---~y~~--------~~H~V~~V~~~~~y~~C~~~~-~~~~~------~-~G~~~v~l~---------- 99 (172)
..+++||.|-+ +|+. +...++.|++ ++|+.|+... +...+ . .|+.++++.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~-~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G 100 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEH-EEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 100 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECH-HHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCH-HHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCC
Confidence 56789999977 4432 3467889999 9999999765 22222 1 244444331
Q ss_pred ---cCc-eEEEEcCCCCCccCC--CeEEEEec
Q 030729 100 ---KPG-TRYFACGTSGHCEQG--MKVKITTF 125 (172)
Q Consensus 100 ---~~G-~~YFiC~~~~HC~~G--mKl~I~V~ 125 (172)
++| .||||++ +.|=..+ .||.|.|.
T Consensus 101 ~EF~pG~~YY~ISt-~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 101 KEFKEGHSYYYISK-PIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCCTTCEEEEEEE-ESSCCCCSCCEEEEEEC
T ss_pred eeecCCCcEEEEEc-cCCCCCCcceEEEEEEE
Confidence 467 5888887 3331111 78888774
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=90.16 E-value=0.7 Score=38.54 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCCCC----Ccc
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTSG----HCE 115 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~----HC~ 115 (172)
..+++.||+|++++.+. .|++..=.. ...+ ...++.....|. ..++++++|++||-|...+ |=.
T Consensus 66 ~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~-~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~ 141 (336)
T 1oe1_A 66 TLVVHEGDYVQLTLVNPATNAMPHNVDFHGA-TGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVV 141 (336)
T ss_dssp CEEEETTCEEEEEEEECTTCCSCBCCEETTS-CSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHH
T ss_pred eEEEcCCCEEEEEEEcCCCCCccccceECCC-CCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHh
Confidence 46889999999988763 477655211 1000 011111223343 2567788999999999754 556
Q ss_pred CCCeEEEEecCCC
Q 030729 116 QGMKVKITTFSGT 128 (172)
Q Consensus 116 ~GmKl~I~V~~~~ 128 (172)
.||...+.|.+..
T Consensus 142 ~Gl~G~liV~~~~ 154 (336)
T 1oe1_A 142 SGMSGTLMVLPRD 154 (336)
T ss_dssp TTCEEEEEEECTT
T ss_pred CCCeEEEEEecCc
Confidence 8999999998654
No 50
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=89.49 E-value=0.61 Score=39.04 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCCC---CCccC
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTS---GHCEQ 116 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~---~HC~~ 116 (172)
..+++.||++++++.+. .|++.-=-- ...|. ... ......|. ..++.+++|++||-|... .|=..
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~-~~~dG--~~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~ 146 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAA-TGQGG--GAA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN 146 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTC-CSGGG--GTT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCcc-ccCCC--CCc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhc
Confidence 47889999999988654 355543100 00110 000 11123343 256668899999999752 45568
Q ss_pred CCeEEEEecCCC
Q 030729 117 GMKVKITTFSGT 128 (172)
Q Consensus 117 GmKl~I~V~~~~ 128 (172)
||...|.|.+..
T Consensus 147 Gl~G~~iV~~~~ 158 (327)
T 1kbv_A 147 GMYGLILVEPKE 158 (327)
T ss_dssp TCEEEEEEECTT
T ss_pred ceEEEEEEecCC
Confidence 999999998653
No 51
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=89.29 E-value=0.68 Score=38.60 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=49.7
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCCCC-----Cc
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTSG-----HC 114 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~-----HC 114 (172)
..+++.||+|++++.+. .|.+..-.. .+.+.- .+......|. ..|+++++|++||-|...+ |=
T Consensus 65 ~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~-~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~ 140 (333)
T 1mzy_A 65 LMIVHEGDYVELTLINPPENTMPHNIDFHAA-TGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV 140 (333)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTS-CSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHH
T ss_pred cEEecCCCEEEEEEEECCCCcccccceecCC-CCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhh
Confidence 36789999999988763 366654211 111100 1111223343 3677788999999999764 77
Q ss_pred cCCCeEEEEecCCC
Q 030729 115 EQGMKVKITTFSGT 128 (172)
Q Consensus 115 ~~GmKl~I~V~~~~ 128 (172)
..||...+.|.+..
T Consensus 141 ~~Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 141 VSGMAGCIMVLPRD 154 (333)
T ss_dssp HTTCEEEEEEECTT
T ss_pred hCCCEEEEEEccCc
Confidence 78999999998654
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=86.54 E-value=0.79 Score=39.62 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcC---CCCCccC
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACG---TSGHCEQ 116 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~---~~~HC~~ 116 (172)
..+++.||+|++++.+. .|++.- -+...=+..........|. ..|+++++|++||-|- ...|=..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~----HG~~~~dG~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDL----HAVTGPGGGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEE----TTCCSGGGGGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEe----cCCcCCCCCCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 46888999999988654 455553 1111000000001123343 2566778999999994 3456678
Q ss_pred CCeEEEEecCCC
Q 030729 117 GMKVKITTFSGT 128 (172)
Q Consensus 117 GmKl~I~V~~~~ 128 (172)
||...+.|.+..
T Consensus 137 Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 137 GMYGLILVEPKE 148 (442)
T ss_dssp TCEEEEEEECTT
T ss_pred ccEEEEEEeCCC
Confidence 999999998654
No 53
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=85.18 E-value=1.6 Score=35.75 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCeEEecCEEEEEEccC---CCcEEEeCC-cccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCCC---CCccCC
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVELPS-ESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTS---GHCEQG 117 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~V~~-~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~---~HC~~G 117 (172)
..+++.||+|.+++.+. .|++.-=-- ....|.=. .........|. ..++.+++|++||-|-.. .|=..|
T Consensus 67 ~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p-~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 67 TLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTP-GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCT-TSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCC-CccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 47889999999988653 344433100 01111000 00001112333 267778899999999876 366789
Q ss_pred CeEEEEecCCCC
Q 030729 118 MKVKITTFSGTA 129 (172)
Q Consensus 118 mKl~I~V~~~~~ 129 (172)
|...|.|.+...
T Consensus 146 l~G~liV~~~~~ 157 (288)
T 3gdc_A 146 LYGGFIVEPKEG 157 (288)
T ss_dssp CEEEEEEECSSC
T ss_pred CeEEEEEeCCcc
Confidence 999999987644
No 54
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=82.30 E-value=2.6 Score=35.01 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=48.8
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCCCC----Ccc
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTSG----HCE 115 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~----HC~ 115 (172)
..+++.||+|++++.+. .|.+..-.. ...+ ...+......|. ..++++++|++||-|...+ |=.
T Consensus 72 ~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~-~~~~---~~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~ 147 (340)
T 2bw4_A 72 LMVVHENDYVELRLINPDTNTLLHNIDFHAA-TGAL---GGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVT 147 (340)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTS-CSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHH
T ss_pred cEEEcCCCEEEEEEEeCCCCCccCcceeCCc-CCCC---CCccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHh
Confidence 36788999999988764 366654211 1000 001111223343 2577778999999999764 566
Q ss_pred CCCeEEEEecCCC
Q 030729 116 QGMKVKITTFSGT 128 (172)
Q Consensus 116 ~GmKl~I~V~~~~ 128 (172)
.||...+.|....
T Consensus 148 ~Gl~G~~iV~~~~ 160 (340)
T 2bw4_A 148 SGMNGAIMVLPRD 160 (340)
T ss_dssp TTCEEEEEEECTB
T ss_pred CcCEEEEEEccCc
Confidence 8999999997653
No 55
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=74.88 E-value=5.6 Score=32.23 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=27.6
Q ss_pred cCceEEEEcCCCCCccCCCeEEEEecCCCCC
Q 030729 100 KPGTRYFACGTSGHCEQGMKVKITTFSGTAP 130 (172)
Q Consensus 100 ~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~~ 130 (172)
++|.++|-|-+..|=..||...+.|.+...+
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~~ 269 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 269 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCCC
Confidence 5899999999999999999999999877543
No 56
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=70.24 E-value=6.6 Score=32.30 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=44.6
Q ss_pred CCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCcc-CCCC---cEEEeecCceEEEEcCCCCCccCC---C
Q 030729 48 GQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDSM-NSGN---DVVKLVKPGTRYFACGTSGHCEQG---M 118 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~~-~~G~---~~v~l~~~G~~YFiC~~~~HC~~G---m 118 (172)
...+.+|+.+.|.-.+. .|+... + ++. ++.. -.|. ..++.+++|.||..|+ .-|..| |
T Consensus 172 ~l~lP~g~~v~~~~tS~DViHsf~i-p---~l~-------~k~da~PG~~n~~~~~~~~~G~y~g~Cs--e~CG~~H~~M 238 (262)
T 2gsm_B 172 AMVVPVNKTVVVQVTGADVIHSWTV-P---AFG-------VKQDAVPGRLAQLWFRAEREGIFFGQCS--ELCGISHAYM 238 (262)
T ss_dssp CEEEETTSEEEEEEEESSSCEEEEE-G---GGT-------EEEEECBTCCEEEEEECCSCEEEEECCC--SCCSTTGGGC
T ss_pred eEEEecCCEEEEEEEECcccceeee-c---ccC-------ceEEecCCceeEEEEecCCcEEEEEECh--HhcccCcccC
Confidence 46788999999998864 455543 1 111 1110 1222 3678899999999999 678865 9
Q ss_pred eEEEEecC
Q 030729 119 KVKITTFS 126 (172)
Q Consensus 119 Kl~I~V~~ 126 (172)
++.|.|.+
T Consensus 239 ~~~v~vv~ 246 (262)
T 2gsm_B 239 PITVKVVS 246 (262)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEc
Confidence 99988865
No 57
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=69.82 E-value=9.6 Score=33.98 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCeEEecCEEEEEEccCC----CcEEE----eCCcccCCC-CCCCCCCCccCCCC---cEEEeecCceEEEEcCCCCCcc
Q 030729 48 GQTFKVGDQIVFKYTPGL----HSVVE----LPSESAYKS-CDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTSGHCE 115 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~----H~V~~----V~~~~~y~~-C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~ 115 (172)
..+++.||+|+.++.+.. +++.- +......|. -..+ ......|. ..|+++++|++||-|-...+=.
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vt--q~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASIS--QCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccc--cCCcCCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 578999999999887542 23321 111000110 0000 00122343 3677788999999999988888
Q ss_pred CCCeEEEEecCCC
Q 030729 116 QGMKVKITTFSGT 128 (172)
Q Consensus 116 ~GmKl~I~V~~~~ 128 (172)
.||...+.|....
T Consensus 113 ~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 113 AGLYGSLIVDPPQ 125 (552)
T ss_dssp GTCEEEEEEECCT
T ss_pred ccCeeeEEEeCCc
Confidence 9999999998764
No 58
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=68.44 E-value=10 Score=32.47 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=44.0
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEe--CCcccCCCCCCCCCCCccCCCC---cEEEeecCceEEEEcCCC---CCc
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVEL--PSESAYKSCDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTS---GHC 114 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V--~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~---~HC 114 (172)
..+++.||++++++.+. .|++..= .. .+... . ......|. ..++.+++|.+||-|... .|=
T Consensus 196 ~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~~-~DG~~----~-~~~i~pG~~~~~~~~~~~~G~~~yh~h~~~~~~~~ 269 (447)
T 2dv6_A 196 FLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-PGGAA----A-FTQTDPGEETVVTFKALIPGIYVYHCATPSVPTHI 269 (447)
T ss_dssp CEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-GGGGG----G-GCCBCTTCEEEEEEECCSCEEEEEECCSSSHHHHH
T ss_pred eEEecCCCEEEEEEEeCCCCceeEEEeeccccC-CCCCC----c-cEEeCCCCEEEEEEECCCCeEEEEEeCCCChHHHH
Confidence 46788899999988653 2444320 00 11000 0 01123344 256667899999999853 233
Q ss_pred cCCCeEEEEecCCC
Q 030729 115 EQGMKVKITTFSGT 128 (172)
Q Consensus 115 ~~GmKl~I~V~~~~ 128 (172)
..||...|.|.+..
T Consensus 270 ~~Gl~g~l~v~~~~ 283 (447)
T 2dv6_A 270 TNGMYGLLLVEPEG 283 (447)
T ss_dssp HTTCEEEEEEECTT
T ss_pred hCCCEEEEEEeCCC
Confidence 57999999987653
No 59
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=66.40 E-value=8.7 Score=34.44 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCeEEecCEEEEEEccCC----CcEEE----eCCcccCCC-CCC-CCCCCccCC-CC---cEEEeecCceEEEEcCCCCC
Q 030729 48 GQTFKVGDQIVFKYTPGL----HSVVE----LPSESAYKS-CDL-GTAKDSMNS-GN---DVVKLVKPGTRYFACGTSGH 113 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~----H~V~~----V~~~~~y~~-C~~-~~~~~~~~~-G~---~~v~l~~~G~~YFiC~~~~H 113 (172)
..+++.||+|+.++.+.. +++.- +......|. -.. ..++ .. |. ..|+++++|++||-|-...|
T Consensus 68 ~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I---~P~G~~~~Y~f~~~q~GT~wYH~H~~~q 144 (559)
T 2q9o_A 68 NIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPI---PPKGGQRTYRWRARQYGTSWYHSHFSAQ 144 (559)
T ss_dssp CEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB---CTTTEEEEEEEECCSCEEEEEEECSTTG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCcc---CCCCCeEEEEEECCCCEEEEEEEcccch
Confidence 468889999999987543 33322 100011110 000 0012 23 44 36788899999999999888
Q ss_pred ccCCCeEEEEecCC
Q 030729 114 CEQGMKVKITTFSG 127 (172)
Q Consensus 114 C~~GmKl~I~V~~~ 127 (172)
=..||...+.|...
T Consensus 145 ~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 145 YGNGVVGTIQINGP 158 (559)
T ss_dssp GGGTCEEEEEEECC
T ss_pred hcCCceEEEEecCC
Confidence 88999999999864
No 60
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=63.86 E-value=3.3 Score=34.92 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCeEEecCEEEEEEcc---CCCcEEEeCCcccCCCC-C--CCCCC------C--ccCCCC-cEEEe-----ecCceEEEE
Q 030729 48 GQTFKVGDQIVFKYTP---GLHSVVELPSESAYKSC-D--LGTAK------D--SMNSGN-DVVKL-----VKPGTRYFA 107 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~---~~H~V~~V~~~~~y~~C-~--~~~~~------~--~~~~G~-~~v~l-----~~~G~~YFi 107 (172)
..+++.||+++|.+.+ ..|.+..-.. .|+-- + ..++. . ....|. ..+.+ ++||.++|-
T Consensus 210 ~l~v~~Ge~vri~l~N~g~~~HpfHlHGh--~f~v~~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~~H 287 (343)
T 3cg8_A 210 DFEATVGDRVEIVMITHGEYYHTFHMHGH--RWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYH 287 (343)
T ss_dssp CEEEETTCEEEEEEEEESSCCEEEEETTC--CEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEE
T ss_pred cEEeCCCCEEEEEEEcCCccccccEecCc--EEEEeccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEEEe
Confidence 4689999999997753 3566643111 11110 0 01110 0 011233 23333 479999999
Q ss_pred cCCCCCccCCCeEEEEecCCCCCCCCCCCCCC--CCCCCCCCccccc
Q 030729 108 CGTSGHCEQGMKVKITTFSGTAPSTPASSSSP--ASTSGASSSAFTS 152 (172)
Q Consensus 108 C~~~~HC~~GmKl~I~V~~~~~~~~p~~~~~~--~~~s~~~s~~~~~ 152 (172)
|-+..|=..||...+.|.+....+|.-.+.-+ ...++-.|.+++.
T Consensus 288 CHi~~H~~~GM~g~~~V~~~~~~~P~y~~~~~~~~~~~~~~~~~~~~ 334 (343)
T 3cg8_A 288 CHVQSHSDMGMVGLFLVKKPDGTIPGYEPHEHGGATAKSGESGEPTG 334 (343)
T ss_dssp ECSHHHHHTTCEEEEEEECTTSCCSCC--------------------
T ss_pred CCCHHHHhccCcEEEEEecCCCCCCCCCCCCcCCCcccCCccCCCCC
Confidence 99999999999999999877665554333322 2233344555443
No 61
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=63.53 E-value=10 Score=31.53 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCeEEecCEEEEEEccC---CCcEEE----eCCcccCCCC-CCCCCCCccCCCC---cEEEeecCceEEEEcCCCC--Cc
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVE----LPSESAYKSC-DLGTAKDSMNSGN---DVVKLVKPGTRYFACGTSG--HC 114 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~----V~~~~~y~~C-~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~--HC 114 (172)
..+++.||++++++.+. .+++.- +......|.= ..+ ......|. ..|+++++|++||-|.... |=
T Consensus 36 ~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vt--q~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~ 113 (339)
T 2zwn_A 36 LIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVT--QQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHV 113 (339)
T ss_dssp EEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHT
T ss_pred eEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccc--cCccCCCCeEEEEEECCCCEEEEEEecCCchhhh
Confidence 47889999999988753 222221 1110001100 000 00112343 3677788999999998654 44
Q ss_pred c-CCCeEEEEecCCC
Q 030729 115 E-QGMKVKITTFSGT 128 (172)
Q Consensus 115 ~-~GmKl~I~V~~~~ 128 (172)
. .||...+.|.+..
T Consensus 114 ~~~Gl~G~liV~p~~ 128 (339)
T 2zwn_A 114 GVRGMWGPLIVDPKQ 128 (339)
T ss_dssp TTSCCEEEEEEECSS
T ss_pred hcCCceEeEEecCCC
Confidence 4 8999888887653
No 62
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=63.05 E-value=6.5 Score=32.68 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=45.2
Q ss_pred CCeEEecCEEEEEEccC---CCcEEEe----CCcccCCC-CCCCCCCCccCCCC---cEEEeecCceEEEEcCCCCC-c-
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVEL----PSESAYKS-CDLGTAKDSMNSGN---DVVKLVKPGTRYFACGTSGH-C- 114 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~V----~~~~~y~~-C~~~~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~H-C- 114 (172)
..+++.||+|++++.+. .|++.-= ......|. -..+ ......|. ..++++++|++||-|..... .
T Consensus 35 ~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t--~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~ 112 (318)
T 3g5w_A 35 LIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHAT--QHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHV 112 (318)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHH
T ss_pred eEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccc--cccCCCCCEEEEEEEcCCCEEEEEEccCChhhhh
Confidence 46889999999998753 2344321 00001110 0000 01112343 36777889999999987422 1
Q ss_pred -cCCCeEEEEecCCC
Q 030729 115 -EQGMKVKITTFSGT 128 (172)
Q Consensus 115 -~~GmKl~I~V~~~~ 128 (172)
..||...|.|.+..
T Consensus 113 ~~~Gl~G~lIV~~~~ 127 (318)
T 3g5w_A 113 TMRGMWGPLIVEPKN 127 (318)
T ss_dssp HHSCCEEEEEEECSS
T ss_pred ccCCCEEEEEEcCCC
Confidence 26999999987654
No 63
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=62.93 E-value=14 Score=32.91 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=49.2
Q ss_pred CCeEEecCEEEEEEccCC---------CcEEEeCCcccCCC-CCCCCCCCccCCCC---cEEEee-cCceEEEEcCCCCC
Q 030729 48 GQTFKVGDQIVFKYTPGL---------HSVVELPSESAYKS-CDLGTAKDSMNSGN---DVVKLV-KPGTRYFACGTSGH 113 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~---------H~V~~V~~~~~y~~-C~~~~~~~~~~~G~---~~v~l~-~~G~~YFiC~~~~H 113 (172)
..+++.||+|+.++.+.. |-+.+-.. ...|. -..+. .....|. ..|+++ ++|++||-|-...|
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~-~~~DG~~~vtq--~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 111 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGT-ASMDGVPFLTQ--CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQ 111 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTC-GGGSCCBTTTB--CCBCTTCEEEEEEECSSCCEEEEEECCSSSG
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCC-CcccCCCcccc--CCcCCCCeEEEEEEeCccceeEEEEEcCccc
Confidence 578999999999998653 22222100 01110 00000 0122343 267777 88999999999888
Q ss_pred ccCCCeEEEEecCCC
Q 030729 114 CEQGMKVKITTFSGT 128 (172)
Q Consensus 114 C~~GmKl~I~V~~~~ 128 (172)
=..|+...+.|....
T Consensus 112 ~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 112 YEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGTCEEEEEEECTT
T ss_pred ccCcceeeEEeCCCC
Confidence 889999999998764
No 64
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=62.13 E-value=16 Score=33.30 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.2
Q ss_pred EEEeecCceEEEEcCCCCCccCCCeEEEEecCC
Q 030729 95 VVKLVKPGTRYFACGTSGHCEQGMKVKITTFSG 127 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~~ 127 (172)
.|+++++|++||-|-...+=..|+...|.|..+
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 678889999999999988888899999999854
No 65
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=60.10 E-value=9 Score=31.65 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=29.2
Q ss_pred EEEeecCceEEEEcCCCCCc-cCCCeEEEEecCC
Q 030729 95 VVKLVKPGTRYFACGTSGHC-EQGMKVKITTFSG 127 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~ 127 (172)
.++.+++|.++|.|-...|+ ..||...+.|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 56778899999999998999 9999999999764
No 66
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=59.86 E-value=7.3 Score=32.76 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=43.3
Q ss_pred CCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCcc-CCCC---cEEEeecCceEEEEcCCCCCccCC---C
Q 030729 48 GQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDSM-NSGN---DVVKLVKPGTRYFACGTSGHCEQG---M 118 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~~-~~G~---~~v~l~~~G~~YFiC~~~~HC~~G---m 118 (172)
...+.+|+.+.|.-.+. .|+... ++ +. ++.. -.|. ..++.++||.||..|+ .-|..| |
T Consensus 190 ~lvlP~g~~V~~~ltS~DViHsf~i-P~---lg-------~k~daiPG~~n~~~~~~~~~G~y~g~Cs--E~CG~~Hs~M 256 (298)
T 3hb3_B 190 PVVVPVGKKVLVQVTATDVIHAWTI-PA---FA-------VKQDAVPGRIAQLWFSVDQEGVYFGQCS--ELCGINHAYM 256 (298)
T ss_dssp CEEEESSSEEEEEEEESSSCEEEEE-GG---GT-------EEEEECTTCCEEEEEECSSSEEEEECCC--SCCSTTTTSC
T ss_pred eEEEEcCCEEEEEEEeCCccceeeE-cc---cC-------ceEEecCCceEEEEEEeCCCEEEEEEcc--cccCcCccCC
Confidence 45677888888888763 455543 11 11 1111 1232 3678899999999999 567754 9
Q ss_pred eEEEEecCC
Q 030729 119 KVKITTFSG 127 (172)
Q Consensus 119 Kl~I~V~~~ 127 (172)
++.|.|.+.
T Consensus 257 ~~~v~vvs~ 265 (298)
T 3hb3_B 257 PIVVKAVSQ 265 (298)
T ss_dssp CEEEEEECH
T ss_pred eeEEEEEcH
Confidence 999998753
No 67
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=59.39 E-value=7.4 Score=35.09 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=45.4
Q ss_pred CCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCccCCC--CcEEEeecCceEEEEcCCCCCccCCC-eEEE
Q 030729 48 GQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDSMNSG--NDVVKLVKPGTRYFACGTSGHCEQGM-KVKI 122 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~~~~G--~~~v~l~~~G~~YFiC~~~~HC~~Gm-Kl~I 122 (172)
+..++.|..|.|.=-.+ ...++.+-+-.+...|...-- .|.+= +....| ++|.|||..+...-|++|- |+.|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 488 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPF--SFHAFELGKMYSV-ESGDYFMTASTTELCNDNNLRIHV 488 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCC--ccCcccccceEec-CCCceEecCChHHHHhCCceeEEE
Confidence 56777888888843221 223333322244446763221 11111 113344 6999999999999999997 9999
Q ss_pred Eec
Q 030729 123 TTF 125 (172)
Q Consensus 123 ~V~ 125 (172)
.|.
T Consensus 489 ~~~ 491 (491)
T 3l6w_A 489 HVD 491 (491)
T ss_pred EeC
Confidence 884
No 68
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=58.20 E-value=7.9 Score=30.96 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=43.3
Q ss_pred CCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCcc-CCCC---cEEEeecCceEEEEcCCCCCccCC---C
Q 030729 48 GQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDSM-NSGN---DVVKLVKPGTRYFACGTSGHCEQG---M 118 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~~-~~G~---~~v~l~~~G~~YFiC~~~~HC~~G---m 118 (172)
...+.+|+.|.|.-.+. .|+... .++. ++.. -.|. ..++.+++|.||..|+ .-|..| |
T Consensus 42 ~l~lP~g~~V~~~lTS~DViHSF~I----P~lg-------vK~daiPGr~n~l~~~~~~pG~y~g~Cs--E~CG~~Hs~M 108 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNSVMHSFFI----PRLG-------SQIYAMAGMQTRLHLIANEPGTYDGICA--EICGPGHSGM 108 (205)
T ss_dssp EEEEETTSCEEEEEEESSSCEEEEE----GGGT-------EEEEECTTCCEEEEECCSSSEEEEEEEC--SCCSTTSTTC
T ss_pred eEEEeCCCEEEEEEecCCceeeEEe----cccC-------cEEEecCCceEEEEEEeCCCeEEEEEcc--cccccchhhc
Confidence 46778999999988764 455544 1111 1111 1232 3577789999999998 567754 9
Q ss_pred eEEEEec
Q 030729 119 KVKITTF 125 (172)
Q Consensus 119 Kl~I~V~ 125 (172)
++.|.|.
T Consensus 109 ~~~v~vv 115 (205)
T 1cyx_A 109 KFKAIAT 115 (205)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999887
No 69
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=58.15 E-value=11 Score=31.06 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=29.0
Q ss_pred EEEeecCceEEEEcCCCCCc-cCCCeEEEEecCC
Q 030729 95 VVKLVKPGTRYFACGTSGHC-EQGMKVKITTFSG 127 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~ 127 (172)
.++.+++|.|+|.|....|+ ..||...+.|...
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~ 319 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGK 319 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCC
Confidence 56778899999999988898 8999999999864
No 70
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=56.65 E-value=4.4 Score=33.06 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCeEEecCEEEEEEcc-C----CCcEEEeCCcccCCCCCCC----CCC--Cc--cCCCC---cEEEeecCceEEEEcCC
Q 030729 47 SGQTFKVGDQIVFKYTP-G----LHSVVELPSESAYKSCDLG----TAK--DS--MNSGN---DVVKLVKPGTRYFACGT 110 (172)
Q Consensus 47 ~~~~f~vGDtLvF~y~~-~----~H~V~~V~~~~~y~~C~~~----~~~--~~--~~~G~---~~v~l~~~G~~YFiC~~ 110 (172)
...+++.||++.|..-+ + .|.+..-. ..|+--... .+. .. ...|. ..++.++||.+.|.|-+
T Consensus 195 ~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG--~~f~v~~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~ 272 (288)
T 3gdc_A 195 FPVKVKQHELVRIHLINVLEYDPINSFHIHG--NFFHYYPTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHK 272 (288)
T ss_dssp SCEEEETTCCEEEEEEECCCSSSEEEEEETT--CCEEEEETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSS
T ss_pred cccccCCCCEEEEEEEeCCCCCcceeEEEcC--CEEEEEcCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecC
Confidence 35789999999988854 2 25554321 111100000 010 00 11232 24566789999999999
Q ss_pred CCCccCCCeEEEEecC
Q 030729 111 SGHCEQGMKVKITTFS 126 (172)
Q Consensus 111 ~~HC~~GmKl~I~V~~ 126 (172)
..|=+.||...+.|.+
T Consensus 273 ~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 273 TEFAELGWMGFFEVSA 288 (288)
T ss_dssp HHHHTTTCEEEEEEEC
T ss_pred hHHHhcCCCEEEEEeC
Confidence 9999999999999864
No 71
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=56.57 E-value=7.5 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=25.1
Q ss_pred EEEeecCceEEEEcCCCCCccCC---CeEEEEecC
Q 030729 95 VVKLVKPGTRYFACGTSGHCEQG---MKVKITTFS 126 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 126 (172)
.++.+++|.||..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cs--e~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCS--EICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCC--SCCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEeh--hhcccccccCeEEEEEEc
Confidence 577789999999998 578876 999888864
No 72
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=54.67 E-value=21 Score=31.53 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=47.7
Q ss_pred CCeEEecCEEEEEEccCC--------CcEEEeCCcccCC-CCCCCCC--C--CccCCCC---cEEEe-ecCceEEEEcCC
Q 030729 48 GQTFKVGDQIVFKYTPGL--------HSVVELPSESAYK-SCDLGTA--K--DSMNSGN---DVVKL-VKPGTRYFACGT 110 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~--------H~V~~V~~~~~y~-~C~~~~~--~--~~~~~G~---~~v~l-~~~G~~YFiC~~ 110 (172)
..+++.||+|+.++.+.. ++|.-= . -... .....+. + .....|. ..|++ +++|++||-|-.
T Consensus 36 ~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwH-G-l~~~~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH~ 113 (495)
T 3t6v_A 36 VIAGNVGDNFQIVTFNQLIECSMLVDTSIHWH-G-EFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHL 113 (495)
T ss_dssp EEEEETTCEEEEEEEECCCCGGGCSCBCEEEE-T-CCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEECS
T ss_pred eEEEECCcEEEEEEEECCCCccCCCceEEEeC-C-cccCCCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeeccc
Confidence 468899999999987643 222210 0 0000 0111111 0 0122343 26677 579999999998
Q ss_pred CCCccCCCeEEEEecCCC
Q 030729 111 SGHCEQGMKVKITTFSGT 128 (172)
Q Consensus 111 ~~HC~~GmKl~I~V~~~~ 128 (172)
..|=..|+...+.|....
T Consensus 114 ~~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 114 TTQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp TTGGGGTCEEEEEEECTT
T ss_pred hhHHhcCceEEEEEcCcc
Confidence 888889999999997653
No 73
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=53.94 E-value=1.8 Score=35.79 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=32.3
Q ss_pred CCeEEecCEEEEEEccC-----CCcEEEeCCcccCCCCCC--CCCCCcc--CCCCcEEEeecCceEEEEcCCCCCccCCC
Q 030729 48 GQTFKVGDQIVFKYTPG-----LHSVVELPSESAYKSCDL--GTAKDSM--NSGNDVVKLVKPGTRYFACGTSGHCEQGM 118 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~-----~H~V~~V~~~~~y~~C~~--~~~~~~~--~~G~~~v~l~~~G~~YFiC~~~~HC~~Gm 118 (172)
..+++.||++.|+.-+. .|.+. +.. ..++. +. .+.+... ..-...++.+++|.++|.|-+..|-..||
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~h-lhG-~~~~~-dG~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM 292 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIH-FNG-QVLEQ-NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGM 292 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCB-CSS-TTCEE-TTEECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTC
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEE-ECC-cEeee-CCEEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCC
Confidence 46778899999987642 13222 112 11221 00 0111111 11223677788999999999999999999
Q ss_pred eEEEEecCC
Q 030729 119 KVKITTFSG 127 (172)
Q Consensus 119 Kl~I~V~~~ 127 (172)
...+.|.+.
T Consensus 293 ~~~~~V~~~ 301 (306)
T 1sdd_A 293 QAYIDIKNC 301 (306)
T ss_dssp BCCC-----
T ss_pred eEEEEEecC
Confidence 999988753
No 74
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=53.43 E-value=24 Score=31.30 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCeEEecCEEEEEEccCC--------CcEEEeCCcccCCCCCCCCCC----CccCCCC---cEEEe-ecCceEEEEcCCC
Q 030729 48 GQTFKVGDQIVFKYTPGL--------HSVVELPSESAYKSCDLGTAK----DSMNSGN---DVVKL-VKPGTRYFACGTS 111 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~--------H~V~~V~~~~~y~~C~~~~~~----~~~~~G~---~~v~l-~~~G~~YFiC~~~ 111 (172)
..+++.||+|+.++.+.. ++|.-=-- .--.+....+.. .....|. ..|++ +++|++||-|-..
T Consensus 35 ~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl-~~~~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH~~ 113 (499)
T 3pxl_A 35 LVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGF-FQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLS 113 (499)
T ss_dssp CEEEETTCEEEEEEEECCCCGGGCSCBCEEEETC-CCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEECST
T ss_pred eEEEeCCCEEEEEEEECCCCccCCCceEEEeCCc-ccCCCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeeccch
Confidence 478999999999987642 22322000 000001111110 0123343 25676 5699999999988
Q ss_pred CCccCCCeEEEEecCCC
Q 030729 112 GHCEQGMKVKITTFSGT 128 (172)
Q Consensus 112 ~HC~~GmKl~I~V~~~~ 128 (172)
.|=..|+...+.|....
T Consensus 114 ~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 114 TQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp TGGGGTCEEEEEEECTT
T ss_pred hHHhccceeEEEEcCCc
Confidence 88889999999997653
No 75
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=53.27 E-value=9.8 Score=36.97 Aligned_cols=76 Identities=22% Similarity=0.171 Sum_probs=51.4
Q ss_pred CCeEEecCEEEEEEcc-----CCCcEEEeCC-----cccCCCCCCCCCCCccCCCCcEEEeecCceEEEEcCCCCCccCC
Q 030729 48 GQTFKVGDQIVFKYTP-----GLHSVVELPS-----ESAYKSCDLGTAKDSMNSGNDVVKLVKPGTRYFACGTSGHCEQG 117 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~-----~~H~V~~V~~-----~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~YFiC~~~~HC~~G 117 (172)
...+..||.|+.+..+ ..|++.+-.. ...++.|. +...++-...++.+.+|++|+-|-+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~----i~pg~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTAN----LFPQTSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEE----ECTTCEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEe----ecCCceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 5789999999987753 2467766321 01122332 21112222356677899999999999999999
Q ss_pred CeEEEEecCC
Q 030729 118 MKVKITTFSG 127 (172)
Q Consensus 118 mKl~I~V~~~ 127 (172)
|+..+.|...
T Consensus 709 m~g~~~V~~~ 718 (1065)
T 2j5w_A 709 MKQKYTVNQC 718 (1065)
T ss_dssp CEEEEEEECC
T ss_pred cEEEEEEcCC
Confidence 9999999765
No 76
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=50.72 E-value=9.6 Score=33.16 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=47.5
Q ss_pred CCeEEecCEEEEEEccCC---CcEEE----eCCcccCCCCCCCCCCCccCCCC---cEEEeec-CceEEEEcCC----CC
Q 030729 48 GQTFKVGDQIVFKYTPGL---HSVVE----LPSESAYKSCDLGTAKDSMNSGN---DVVKLVK-PGTRYFACGT----SG 112 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~---H~V~~----V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~-~G~~YFiC~~----~~ 112 (172)
...++.||+|+.++.+.. +++.- +.. +.|. .+......|. ..+++++ +|++||-|-. ..
T Consensus 51 ~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~--~~DG----~~~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~ 124 (451)
T 2uxt_A 51 TIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPG--PLMG----GPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQ 124 (451)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCEEEETCCCCG--GGSC----SGGGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHH
T ss_pred eEEEeCCCEEEEEEEECCCCCccEEECCccCCC--CCCC----CCcCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhh
Confidence 367889999999997642 33322 111 1110 0111123333 3788886 9999999987 44
Q ss_pred CccCCCeEEEEecCCC
Q 030729 113 HCEQGMKVKITTFSGT 128 (172)
Q Consensus 113 HC~~GmKl~I~V~~~~ 128 (172)
|=..||-..+.|....
T Consensus 125 q~~~Gl~G~liV~~~~ 140 (451)
T 2uxt_A 125 QVYNGLAGMWLVEDEV 140 (451)
T ss_dssp HHHTTCEEEEEEECHH
T ss_pred hHhhcceEEEEEecCc
Confidence 6668999999998753
No 77
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=47.25 E-value=26 Score=28.16 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCeEEecCEEEEEEccC---CCcEEEeCCcccCCCCCCCCCC--CccCCCC---cEEEeec-------------CceEEE
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVELPSESAYKSCDLGTAK--DSMNSGN---DVVKLVK-------------PGTRYF 106 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~V~~~~~y~~C~~~~~~--~~~~~G~---~~v~l~~-------------~G~~YF 106 (172)
..+++.||+|+.++.+. .++|.-= . -.+.......++ .....|. ..+++++ .|.+||
T Consensus 37 ~i~~~~Gd~v~v~~~N~~~~~~siH~H-G-~~~~~~~DG~~~t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~Y 114 (276)
T 3kw8_A 37 LIEVNEGDTLHIEFTNTMDVRASLHVH-G-LDYEISSDGTAMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHY 114 (276)
T ss_dssp CEEEETTCEEEEEEEECSSSCBCCEES-S-SBCCGGGSCCTTTTCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEE
T ss_pred eEEEECCCEEEEEEEECCCCCccEeec-C-cccCCccCCCcCCcCCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEE
Confidence 36889999999998764 2233220 0 001111001111 1122333 2566653 478889
Q ss_pred EcCCCC------CccCCCeEEEEecCCCC
Q 030729 107 ACGTSG------HCEQGMKVKITTFSGTA 129 (172)
Q Consensus 107 iC~~~~------HC~~GmKl~I~V~~~~~ 129 (172)
-|-..+ |=..||...+.|.....
T Consensus 115 H~h~~~~~~~~~~~~~Gl~G~liV~~~~~ 143 (276)
T 3kw8_A 115 HDHVVGTEHGTGGIRNGLYGPVIVRRKGD 143 (276)
T ss_dssp ECSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred ecCccccccchhhhhCccEEEEEEecCCC
Confidence 998753 45679999999987643
No 78
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=44.60 E-value=11 Score=31.92 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=44.7
Q ss_pred CCCeEEecCEEEEEEccC--CCcEEEeCCcccCCCCCCCCCCCcc-CCCC---cEEEeecCceEEEEcCCCCCccCC---
Q 030729 47 SGQTFKVGDQIVFKYTPG--LHSVVELPSESAYKSCDLGTAKDSM-NSGN---DVVKLVKPGTRYFACGTSGHCEQG--- 117 (172)
Q Consensus 47 ~~~~f~vGDtLvF~y~~~--~H~V~~V~~~~~y~~C~~~~~~~~~-~~G~---~~v~l~~~G~~YFiC~~~~HC~~G--- 117 (172)
+...+.+|..+.|.-.+. .|+-.. + ++. ++.. -.|. ..++.+++|.||..|+ .-|..|
T Consensus 151 n~l~lP~g~~V~~~lTS~DViHsf~I-P---~lg-------~k~DaiPGr~n~~~~~~~~~G~y~g~Cs--E~CG~~Hs~ 217 (315)
T 1fft_B 151 NEIAFPANTPVYFKVTSNSVMNSFFI-P---RLG-------SQIYAMAGMQTRLHLIANEPGTYDGISA--SYSGPGFSG 217 (315)
T ss_dssp SBCCCCSSSEEEEEECBSSSCEEEEE-G---GGT-------EEEEECBTSCEEEEEECCSCBCCEEBCC--SCCSTTTTT
T ss_pred ceEEEeCCCEEEEEEEeCCccceeee-c---ccC-------cEEeecCCcceeeEEecCCCeEEEEecc--ccchhhHHh
Confidence 356788999999999874 355543 1 111 1111 1232 3678899999999998 578764
Q ss_pred CeEEEEec
Q 030729 118 MKVKITTF 125 (172)
Q Consensus 118 mKl~I~V~ 125 (172)
|++.|.|.
T Consensus 218 M~~~v~vv 225 (315)
T 1fft_B 218 MKFKAIAT 225 (315)
T ss_dssp CCEECCBC
T ss_pred ccceEEEe
Confidence 99999887
No 79
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=44.46 E-value=30 Score=28.37 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=21.6
Q ss_pred cCceEEEEcCCCCC------ccCCCeEEEEecCCCC
Q 030729 100 KPGTRYFACGTSGH------CEQGMKVKITTFSGTA 129 (172)
Q Consensus 100 ~~G~~YFiC~~~~H------C~~GmKl~I~V~~~~~ 129 (172)
+.|++||-|-+.+. =..||...|.|.+...
T Consensus 114 ~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~ 149 (313)
T 3tas_A 114 SAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGD 149 (313)
T ss_dssp SCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred CceEEEEeecCcccccchhhhhccccCceEeecccc
Confidence 45889999976443 3469999999986543
No 80
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=42.50 E-value=18 Score=29.87 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=47.1
Q ss_pred CCeEEecCEEEEEEcc----CCCcEEEeCCcccCCCC--C--CCCCCC--c--cCCCC---cEEEeecCceEEEEcCCCC
Q 030729 48 GQTFKVGDQIVFKYTP----GLHSVVELPSESAYKSC--D--LGTAKD--S--MNSGN---DVVKLVKPGTRYFACGTSG 112 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~----~~H~V~~V~~~~~y~~C--~--~~~~~~--~--~~~G~---~~v~l~~~G~~YFiC~~~~ 112 (172)
..+++.|+++.|+.-+ ..|.+... . ..|+-- + ...+.. . ...|. ..++.+++|.++|.|....
T Consensus 215 ~l~v~~G~~vRlRliN~~~~~~~~~~l~-G-h~f~vi~~DG~~~~p~~~d~l~l~pGer~dv~v~~~~pG~y~l~~h~~~ 292 (327)
T 1kbv_A 215 ALKAKAGETVRMYVGNGGPNLVSSFHVI-G-EIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIF 292 (327)
T ss_dssp CEEEETTEEEEEEEEEEESSCCEEEEEE-T-CCBSEEEGGGSSCEECSBSEEEECTTEEEEEEEEECSCEEEEEEESSTH
T ss_pred eEEeCCCCEEEEEEECCCCCCceeEEEe-C-CEEEEEEcCCCcCCCCceeEEEECCCCEEEEEEEeCCCeEEEEEecccc
Confidence 4578889999998753 13444332 1 111100 0 001111 1 12232 2567788999999999999
Q ss_pred Cc-cCCCeEEEEecCC
Q 030729 113 HC-EQGMKVKITTFSG 127 (172)
Q Consensus 113 HC-~~GmKl~I~V~~~ 127 (172)
|| ..||...+.+...
T Consensus 293 ~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 293 RAFNKGALGQLKVEGA 308 (327)
T ss_dssp HHHHSSCEEEEEEESC
T ss_pred ccccCCcEEEEEECCC
Confidence 98 7899988888754
No 81
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=42.12 E-value=18 Score=34.03 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=46.0
Q ss_pred CeEEecCEEEEEEccCC--------CcEEEeCCcccCCCCCCCCCCCccCCCCc---EEEee----------cCceEEEE
Q 030729 49 QTFKVGDQIVFKYTPGL--------HSVVELPSESAYKSCDLGTAKDSMNSGND---VVKLV----------KPGTRYFA 107 (172)
Q Consensus 49 ~~f~vGDtLvF~y~~~~--------H~V~~V~~~~~y~~C~~~~~~~~~~~G~~---~v~l~----------~~G~~YFi 107 (172)
.++++||+|+.++.+.. |-+.+ .. ...|. ..++......|.. .+++. .+|++||-
T Consensus 201 Ir~~~GD~v~v~~~N~l~~~~siH~HG~~~-~~-~~~dG--~~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYH 276 (770)
T 2r7e_B 201 IRAEVEDNIMVTFRNQASRPYSFYSSLISY-EE-DQRQG--AEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYS 276 (770)
T ss_dssp CCCCSSSCEEEEEECCSSSCCCCCBTTCCC-CC-CSSSC--TTTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEEC
T ss_pred EEEEcCCEEEEEEEECCCCCcceeeccccc-cc-ccCCC--CcCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEee
Confidence 57889999999987642 33322 11 11110 0001111233442 44555 57999999
Q ss_pred cCCCC--CccCCCeEEEEecCCCC
Q 030729 108 CGTSG--HCEQGMKVKITTFSGTA 129 (172)
Q Consensus 108 C~~~~--HC~~GmKl~I~V~~~~~ 129 (172)
|.+.. |...||...|.|.....
T Consensus 277 sh~~~~~q~~~GL~G~liV~~~~~ 300 (770)
T 2r7e_B 277 SDVDLEKDVHSGLIGPLLVCHTNT 300 (770)
T ss_dssp CCSSSSHHHHTSCCEEEEEECSTT
T ss_pred ccCCcHHHHhCCceeeEEECCCcc
Confidence 98766 68899999999887643
No 82
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=41.82 E-value=10 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.943 Sum_probs=12.4
Q ss_pred CeEEecCEEEE-EEccC
Q 030729 49 QTFKVGDQIVF-KYTPG 64 (172)
Q Consensus 49 ~~f~vGDtLvF-~y~~~ 64 (172)
..|++||.|+| +|..+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 46999999999 47543
No 83
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=41.19 E-value=14 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=28.8
Q ss_pred ecCceEEEEcCCCCCccCCCeEEEEecCCCCCCC
Q 030729 99 VKPGTRYFACGTSGHCEQGMKVKITTFSGTAPST 132 (172)
Q Consensus 99 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~~~~ 132 (172)
++||.+.|-|-+..|=++||...+.|......+|
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~~P 293 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGTMP 293 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCC
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCCCC
Confidence 3589999999999999999999999987755433
No 84
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=40.99 E-value=34 Score=27.95 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=20.7
Q ss_pred cCceEEEEcCCCC------CccCCCeEEEEecCCC
Q 030729 100 KPGTRYFACGTSG------HCEQGMKVKITTFSGT 128 (172)
Q Consensus 100 ~~G~~YFiC~~~~------HC~~GmKl~I~V~~~~ 128 (172)
..|++||-|-..+ |=..||...+.|....
T Consensus 130 ~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~ 164 (299)
T 3t9w_A 130 TAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQG 164 (299)
T ss_dssp CCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT
T ss_pred CceeEEEecCCcccccchhhhcccccceEEEeccc
Confidence 4599999886433 2235999999998654
No 85
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=39.69 E-value=9.7 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=16.3
Q ss_pred cCCCeEEecCEEEEEEccC
Q 030729 46 ASGQTFKVGDQIVFKYTPG 64 (172)
Q Consensus 46 a~~~~f~vGDtLvF~y~~~ 64 (172)
+..+.++.||.|+|++...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 4568999999999999865
No 86
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=38.90 E-value=55 Score=26.63 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=44.7
Q ss_pred CCeEEecCEEEEEEccC---CCcEEE----eCCcccCCCCCCCCCC------CccCCCCc---EEEeecC----------
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVE----LPSESAYKSCDLGTAK------DSMNSGND---VVKLVKP---------- 101 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~----V~~~~~y~~C~~~~~~------~~~~~G~~---~v~l~~~---------- 101 (172)
..+++.||+|++++.+. .+++.- ++.+.+ -.....++. .....|.. .++++++
T Consensus 61 ~I~v~~Gd~v~v~~~N~l~~~~siH~HGl~~~~~~d-G~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~~~~gp~~~d~~~ 139 (306)
T 1sdd_A 61 TLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSE-GASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPC 139 (306)
T ss_dssp CEEEETTCEEEEEEEECSSSCBCCEEESSCCCTTTS-CCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSSSCSE
T ss_pred EEEEeCCCEEEEEEEECCCCcccEeecceecccccC-CCccCCCCcccccCCCccCCCCeEEEEEEeCCccCCCCCCCCc
Confidence 46889999999998764 222221 111010 011111110 11223432 5666554
Q ss_pred ceEEEEcCCCC--CccCCCeEEEEecCCC
Q 030729 102 GTRYFACGTSG--HCEQGMKVKITTFSGT 128 (172)
Q Consensus 102 G~~YFiC~~~~--HC~~GmKl~I~V~~~~ 128 (172)
|++||-|-... |-..|+...+.|....
T Consensus 140 GT~wYHsH~~~~~q~~~GL~G~liV~~~~ 168 (306)
T 1sdd_A 140 LTHIYYSYVNLVEDFNSGLIGPLLICKKG 168 (306)
T ss_dssp EEEEEECCSSSHHHHHTTCCEEEEEECTT
T ss_pred eEEEEeccCCchhhhccCceEEEEEccCC
Confidence 79999998654 5568999998887653
No 87
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=38.08 E-value=44 Score=29.47 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=28.3
Q ss_pred EEEe-ecCceEEEEcCCCCCccCCCeEEEEecCCC
Q 030729 95 VVKL-VKPGTRYFACGTSGHCEQGMKVKITTFSGT 128 (172)
Q Consensus 95 ~v~l-~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 128 (172)
.+++ +++|++||-|-...|=..||-..+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5664 468999999999888889999999998653
No 88
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=35.33 E-value=14 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=18.8
Q ss_pred cCCCeEEecCEEEEEEccCCCcEEEe
Q 030729 46 ASGQTFKVGDQIVFKYTPGLHSVVEL 71 (172)
Q Consensus 46 a~~~~f~vGDtLvF~y~~~~H~V~~V 71 (172)
+..+.+++||.++|++....--+.+|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 45689999999999998742224444
No 89
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=35.27 E-value=8.4 Score=26.94 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=14.4
Q ss_pred cCceEEEEcCCCCCc-cCCCeEEEEecCCC
Q 030729 100 KPGTRYFACGTSGHC-EQGMKVKITTFSGT 128 (172)
Q Consensus 100 ~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~ 128 (172)
+.|.|| |.+...- ..+.++.+.|.+..
T Consensus 86 Dsg~Y~--C~~~~~~~~~~~~v~L~V~~~~ 113 (124)
T 2nms_A 86 DADTYW--CGIEKTGNDLGVTVQVTIDPAP 113 (124)
T ss_dssp GCEEEE--EEEEETTEEEEEEEEEEEECCC
T ss_pred HCEEEE--EEEEcCCCCccEEEEEEEeCCC
Confidence 456554 6542111 34566777777653
No 90
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=34.61 E-value=26 Score=30.94 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=46.0
Q ss_pred CCeEEecCEEEEEEccC---C-----CcEEEeCCcccCCCCCCCCCCCccCCCC---cEEEeec--CceEEEEcCCC---
Q 030729 48 GQTFKVGDQIVFKYTPG---L-----HSVVELPSESAYKSCDLGTAKDSMNSGN---DVVKLVK--PGTRYFACGTS--- 111 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~-----H~V~~V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~--~G~~YFiC~~~--- 111 (172)
..+++.||+|+.++.+. . |-+.+ +. ..|. .+-.....|. ..|++.+ +|++||-|-..
T Consensus 83 tIr~~~Gd~v~v~v~N~l~~~tsiHwHGl~~-~~--~~DG----~pq~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t 155 (481)
T 3zx1_A 83 KIEVFEGDKLEILVKNKLKEATTIHWHGVPV-PP--DQDG----SPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTA 155 (481)
T ss_dssp BEEEETTCEEEEEEEECSSSCBCCEEETCCC-CG--GGSC----CTTSCBCTTCEEEEEEECCTTCCEEEEEECCCTTTH
T ss_pred eEEEECCcEEEEEEEeCCCCCeeEEecCccc-CC--ccCC----CccCcCCCCCeEEEEEeCCCCCCceEEEeecCCCcc
Confidence 47899999999999764 1 33322 11 1110 0111223343 2566665 69999999853
Q ss_pred -CCccCCCeEEEEecCCCC
Q 030729 112 -GHCEQGMKVKITTFSGTA 129 (172)
Q Consensus 112 -~HC~~GmKl~I~V~~~~~ 129 (172)
.|=..|+...+.|.....
T Consensus 156 ~~q~~~GL~G~lIV~~~~~ 174 (481)
T 3zx1_A 156 SKQVFMGLAGAFVIKAKKD 174 (481)
T ss_dssp HHHHHTTCCEEEEEECSSC
T ss_pred hhhhhccceEEEEEcCccc
Confidence 345579999999987643
No 91
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=32.59 E-value=48 Score=29.06 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=27.9
Q ss_pred EEEe-ecCceEEEEcCCCCCccCCCeEEEEecCCC
Q 030729 95 VVKL-VKPGTRYFACGTSGHCEQGMKVKITTFSGT 128 (172)
Q Consensus 95 ~v~l-~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 128 (172)
.|++ +++|++||-|-...|=..||-..+.|....
T Consensus 96 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 130 (503)
T 1hfu_A 96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN 130 (503)
T ss_dssp EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCccEEEEecchhhhhCcceeeEEEcCCC
Confidence 4553 468999999999888888999999998653
No 92
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=32.28 E-value=35 Score=29.10 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=28.5
Q ss_pred EEEeecCceEEEEcCCCCCc-cCCCeEEEEecCCC
Q 030729 95 VVKLVKPGTRYFACGTSGHC-EQGMKVKITTFSGT 128 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~ 128 (172)
.++.+++|.|++.|....|+ ..||...+.|....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 56778899999999988887 78998888887654
No 93
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=32.24 E-value=31 Score=33.50 Aligned_cols=77 Identities=13% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCeEEecCEEEEEEcc-C----CCcEEEeCCcccCCCCCCCCCCC--c--cCCCC---cEEEeecCceEEEEcCCCCCcc
Q 030729 48 GQTFKVGDQIVFKYTP-G----LHSVVELPSESAYKSCDLGTAKD--S--MNSGN---DVVKLVKPGTRYFACGTSGHCE 115 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~-~----~H~V~~V~~~~~y~~C~~~~~~~--~--~~~G~---~~v~l~~~G~~YFiC~~~~HC~ 115 (172)
..+++.|+++.|++-+ + .|++.. .. ..+. .++.. . ...|. ..++.+++|.|+|.|-...|=.
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~i-~G-h~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~ 345 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAFF-HG-QALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLK 345 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEEE-TT-CCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHH
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEEE-cC-CEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhh
Confidence 5689999999999864 2 355443 33 2232 11211 1 12233 2567778999999999999989
Q ss_pred CCCeEEEEecCCCCC
Q 030729 116 QGMKVKITTFSGTAP 130 (172)
Q Consensus 116 ~GmKl~I~V~~~~~~ 130 (172)
.||...+.|.+....
T Consensus 346 ~Gm~~~~~V~~~~~~ 360 (1065)
T 2j5w_A 346 AGLQAFFQVQECNKS 360 (1065)
T ss_dssp TTCEEEEEEECSCCC
T ss_pred CCCEEEEEEecCCCc
Confidence 999999999865543
No 94
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=31.77 E-value=24 Score=31.95 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=47.2
Q ss_pred CCeEEecCEEEEEEcc-C----CCcEEEeCCcccCCCCCCCCCC--Cc--cCCCC---cEEEeecCceEEEEcCCCCCcc
Q 030729 48 GQTFKVGDQIVFKYTP-G----LHSVVELPSESAYKSCDLGTAK--DS--MNSGN---DVVKLVKPGTRYFACGTSGHCE 115 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~-~----~H~V~~V~~~~~y~~C~~~~~~--~~--~~~G~---~~v~l~~~G~~YFiC~~~~HC~ 115 (172)
..+++.||++.|+.-+ + .|.+.. .. ..|.--. .++. .. ...|. ..++.+++|.+.|-|-+..|-.
T Consensus 240 ~l~v~~G~~vrlrliN~~~~~~~h~~hl-hG-~~f~vi~-~d~~~~d~v~l~pg~r~~v~~~~~~pG~w~~hch~~~h~~ 316 (647)
T 1sdd_B 240 GLRMYEQEWVRLHLLNLGGSRDIHVVHF-HG-QTLLENG-TQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQR 316 (647)
T ss_dssp CCEEETTCEEEEEEEECCCTTCCEEEEE-TT-CCEEECS-SSCEEESSEEECTTEEEEEEEECCSSEEEEEECCCHHHHT
T ss_pred CeEEcCCCEEEEEEEeCCCCCcceeEEE-cC-cEEEEec-CCCcccceEEECCCeEEEEEEEeccceEeecccCcccccc
Confidence 4678889999988743 1 354433 22 1121110 1111 01 12232 2566678999999999999999
Q ss_pred CCCeEEEEecC
Q 030729 116 QGMKVKITTFS 126 (172)
Q Consensus 116 ~GmKl~I~V~~ 126 (172)
.||...+.|.+
T Consensus 317 ~Gm~~~~~V~~ 327 (647)
T 1sdd_B 317 AGMQTPFLIVD 327 (647)
T ss_dssp TTCEEEEEEEC
T ss_pred cccccceeeec
Confidence 99999999964
No 95
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=31.56 E-value=18 Score=25.27 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEecCCCCCCCCCCcccccCCCeEEecCEEEEE
Q 030729 27 QHTVGGSQGWVESADLNSWASGQTFKVGDQIVFK 60 (172)
Q Consensus 27 ~~~VG~~~GW~~~~nY~~Wa~~~~f~vGDtLvF~ 60 (172)
+.++||+.| ....+.|-+. +..||+|.++
T Consensus 41 ~~~l~DeTG---~I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA---RIRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC---EEEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC---eEEEEEEcCc--cCCCCEEEEE
Confidence 567899887 3457888776 9999999998
No 96
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=31.39 E-value=24 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=9.5
Q ss_pred cCCCeEEEEecCCCCCCCC
Q 030729 115 EQGMKVKITTFSGTAPSTP 133 (172)
Q Consensus 115 ~~GmKl~I~V~~~~~~~~p 133 (172)
..|..+.+.+....++++|
T Consensus 63 ~~g~~i~lv~~~~~~~~~~ 81 (106)
T 3m62_B 63 KDGDQVVFMVSQKKSTKTK 81 (106)
T ss_dssp CTTCEEEEECCC-------
T ss_pred CCCCEEEEEEcCCCCCCCC
Confidence 4688888888766544433
No 97
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=29.89 E-value=51 Score=28.25 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred CeEEecCEEEEEEccC--------CCcEEEeCCcccCCCCCCCCCCCccCCCCcEEEe--ecCceEEEEcCCCC----Cc
Q 030729 49 QTFKVGDQIVFKYTPG--------LHSVVELPSESAYKSCDLGTAKDSMNSGNDVVKL--VKPGTRYFACGTSG----HC 114 (172)
Q Consensus 49 ~~f~vGDtLvF~y~~~--------~H~V~~V~~~~~y~~C~~~~~~~~~~~G~~~v~l--~~~G~~YFiC~~~~----HC 114 (172)
.+++.||+|+.++.+. -|-+.+-.. .|--.+. +....+=...+++ +.+|++||-|-..+ |=
T Consensus 49 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~-~DG~~~~----I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~ 123 (439)
T 2xu9_A 49 LRVRPRDTVRLTLENRLPEPTNLHWHGLPISPK-VDDPFLE----IPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQL 123 (439)
T ss_dssp EEECTTCEEEEEEEECSSSCBCCEEETCCCCTT-TSCTTCC----BCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCcceEeCCCCCCcc-ccCCccc----CCCCCeEEEEEecCCCCCcceEeccCCCCchHHHH
Q ss_pred cCCCeEEEEecC
Q 030729 115 EQGMKVKITTFS 126 (172)
Q Consensus 115 ~~GmKl~I~V~~ 126 (172)
..||...+.|..
T Consensus 124 ~~Gl~G~liV~~ 135 (439)
T 2xu9_A 124 FAGLLGALVVES 135 (439)
T ss_dssp HTTCCEEEEECC
T ss_pred HhhCeEEEEEcC
No 98
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=29.80 E-value=13 Score=32.29 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCeEEecCEEEEEEccC---CCcEEE----eCCcccCCCCCCCCCCCccCCCC---cEEEee-cCceEEEEcC----CCC
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVE----LPSESAYKSCDLGTAKDSMNSGN---DVVKLV-KPGTRYFACG----TSG 112 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~----V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~~G~~YFiC~----~~~ 112 (172)
..+++.||+|+.++.+. .+++.- ++. ..|. .+......|. ..+++. ++|++||-|- ...
T Consensus 39 ~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~--~~DG----~~~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~ 112 (448)
T 3aw5_A 39 TIILRRGQRVDMTLKNKLTEPTIVHWHGFDVNW--HNDA----HPSFAITPGESYNYSFDVVNRAGTYLYHPHPHGLTAK 112 (448)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCEEEETCCCCH--HHHT----CGGGCBCTTCEEEEEEECCSCSEEEEEEECCTTTHHH
T ss_pred eEEEeCCCEEEEEEEECCCCceeEEeCCccCCC--ccCC----CCCccCCCCCEEEEEEEcCCCCCceEeccCCCCchHH
Confidence 46788999999999764 233322 111 0110 0011123343 267777 6899999998 445
Q ss_pred CccCCCeEEEEecCCCC
Q 030729 113 HCEQGMKVKITTFSGTA 129 (172)
Q Consensus 113 HC~~GmKl~I~V~~~~~ 129 (172)
|=..||-..+.|.....
T Consensus 113 q~~~Gl~G~liV~~~~~ 129 (448)
T 3aw5_A 113 QFYMGQLGLVIVEDSGS 129 (448)
T ss_dssp HHHTTCCEEEEEECTTT
T ss_pred HHhccceEEEEEeCCcc
Confidence 56689999999987644
No 99
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=29.33 E-value=18 Score=25.17 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.9
Q ss_pred CeEEecCEEEEEE
Q 030729 49 QTFKVGDQIVFKY 61 (172)
Q Consensus 49 ~~f~vGDtLvF~y 61 (172)
..+..|+++.+..
T Consensus 11 ~~v~~G~~vtL~C 23 (129)
T 3rrq_A 11 LVVTEGDNATFTC 23 (129)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEEeCCCCEEEEe
Confidence 3444455444443
No 100
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=28.99 E-value=15 Score=26.35 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=10.0
Q ss_pred CeEEecCEEEE
Q 030729 49 QTFKVGDQIVF 59 (172)
Q Consensus 49 ~~f~vGDtLvF 59 (172)
+.+++||+|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 57899999999
No 101
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=28.08 E-value=32 Score=19.26 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=12.1
Q ss_pred CcccchHHHHHHHHHH
Q 030729 1 MERMNIKRAFLVLIIS 16 (172)
Q Consensus 1 m~~~~~~~~~~~~~v~ 16 (172)
|+|..++++++++|++
T Consensus 1 M~k~~~~cwilvLfva 16 (30)
T 1skh_A 1 MVKSKIGSWILVLFVA 16 (30)
T ss_dssp CCTTTTTTHHHHHHHH
T ss_pred CCcccccHHHHHHHHH
Confidence 7788788887777655
No 102
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=27.73 E-value=54 Score=27.32 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.1
Q ss_pred CCeEEecCEEEEEEccC
Q 030729 48 GQTFKVGDQIVFKYTPG 64 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~ 64 (172)
..+++.||+|++++.+.
T Consensus 78 ~I~v~~Gd~v~v~~~N~ 94 (343)
T 3cg8_A 78 LIEVNEGDTLHIEFTNT 94 (343)
T ss_dssp CEEEETTCEEEEEEEEC
T ss_pred EEEEECCCEEEEEEEEC
Confidence 46889999999998754
No 103
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=27.55 E-value=33 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=27.2
Q ss_pred cCceEEEEcCCCCCccCCCeEEEEecCCCCC
Q 030729 100 KPGTRYFACGTSGHCEQGMKVKITTFSGTAP 130 (172)
Q Consensus 100 ~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~~ 130 (172)
+||.+.|-|-+..|=..||...++|......
T Consensus 245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~ 275 (313)
T 3tas_A 245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 275 (313)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTCC
T ss_pred CCEeEEEEeCChHHHHCCCeEEEEEECCCCC
Confidence 5899999999999999999999999876544
No 104
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=27.30 E-value=1.1e+02 Score=27.04 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=45.0
Q ss_pred CCeEEecCEEEEEEccC---CCcEEE----eCCcccCCCCCCCCCCCccCCCC---cEEEeec-CceEEEEcCCCCC---
Q 030729 48 GQTFKVGDQIVFKYTPG---LHSVVE----LPSESAYKSCDLGTAKDSMNSGN---DVVKLVK-PGTRYFACGTSGH--- 113 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~---~H~V~~----V~~~~~y~~C~~~~~~~~~~~G~---~~v~l~~-~G~~YFiC~~~~H--- 113 (172)
...++.||+|+.++.+. .++|.- +.. ..|. ....++ ..|. ..+++++ .|++||=|-..++
T Consensus 70 tI~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DG-~~~~~i---~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~ 143 (534)
T 3abg_A 70 TFQVPRGVETVVRFINNAEAPNSVHLHGSFSRA--AFDG-WAEDIT---EPGSFKDYYYPNRQSARTLWYHDHAMHITAE 143 (534)
T ss_dssp EEEEETTCCEEEEEEECSSSCBCEEEETCCCCT--TTTT-CSSSCB---SSCSCCCEEECCCSSSCEEEEEECCTTCHHH
T ss_pred eEEEeCCcEEEEEEEECCCCCceEEECCCcCCC--CCCC-CCCCCC---CCCCeEEEEEecCCcceeEEEecCccccchh
Confidence 35788999999998764 223322 111 1111 001122 2233 3666666 4799999986553
Q ss_pred -ccCCCeEEEEecCCCC
Q 030729 114 -CEQGMKVKITTFSGTA 129 (172)
Q Consensus 114 -C~~GmKl~I~V~~~~~ 129 (172)
=..||...+.|.....
T Consensus 144 q~~~Gl~G~liV~~~~~ 160 (534)
T 3abg_A 144 NAYRGQAGLYMLTDPAE 160 (534)
T ss_dssp HHHTBCEEEEEEECTTT
T ss_pred hhhhcceEEEEEECCcc
Confidence 2379999999987654
No 105
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=27.10 E-value=35 Score=24.73 Aligned_cols=39 Identities=13% Similarity=0.351 Sum_probs=30.4
Q ss_pred ceEEEecCC---CCCCCC-------C----CcccccCCCeEEecCEEEEEEcc
Q 030729 25 AAQHTVGGS---QGWVES-------A----DLNSWASGQTFKVGDQIVFKYTP 63 (172)
Q Consensus 25 a~~~~VG~~---~GW~~~-------~----nY~~Wa~~~~f~vGDtLvF~y~~ 63 (172)
...++||+. ..|+.. . +|..|.....+..|..+.|+|--
T Consensus 23 e~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 23 EVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK 75 (131)
T ss_dssp CEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred CEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence 467889983 459973 2 57899888888889999999954
No 106
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.76 E-value=77 Score=20.86 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=10.1
Q ss_pred cCCCeEEEEecCCCCC
Q 030729 115 EQGMKVKITTFSGTAP 130 (172)
Q Consensus 115 ~~GmKl~I~V~~~~~~ 130 (172)
..|..+.+.+..+.++
T Consensus 67 ~~g~~i~l~~~~~~~~ 82 (95)
T 1wia_A 67 TNNCVIHCHRSPPGAA 82 (95)
T ss_dssp CTTEEEEEECCCCCCC
T ss_pred CCCCEEEEEECCCCCC
Confidence 3677888777654433
No 107
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=26.13 E-value=0.81 Score=24.72 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=14.1
Q ss_pred CCeEEecCEEEEEEccCCC
Q 030729 48 GQTFKVGDQIVFKYTPGLH 66 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~H 66 (172)
.+.|.|.|.|.|.|..+.|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4788999999999987654
No 108
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=25.34 E-value=71 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=26.8
Q ss_pred EEEeecCceEEEEcCCCC-CccCCCeEEEEecCC
Q 030729 95 VVKLVKPGTRYFACGTSG-HCEQGMKVKITTFSG 127 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~-HC~~GmKl~I~V~~~ 127 (172)
.++.+++|.++|.|.... |=..||...|.|...
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~ 325 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGE 325 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCC
Confidence 567788999999999763 557899999998754
No 109
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=24.41 E-value=87 Score=29.12 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=46.9
Q ss_pred CCeEEecCEEEEEEcc-C----CCcEEEeCCcccCCCCC-CCCC--CCccCCCCcEEEeecCceEEEEcCCCCCccCCCe
Q 030729 48 GQTFKVGDQIVFKYTP-G----LHSVVELPSESAYKSCD-LGTA--KDSMNSGNDVVKLVKPGTRYFACGTSGHCEQGMK 119 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~-~----~H~V~~V~~~~~y~~C~-~~~~--~~~~~~G~~~v~l~~~G~~YFiC~~~~HC~~GmK 119 (172)
..+++.||++.++.-+ + .|.+.. .. ..|+-=. ..+. +.....-...++.+++|.+.|-|-+..|=..||.
T Consensus 245 ~l~v~~Ge~vrlrliN~g~~~~~h~~hl-hG-h~f~Vvg~~~Dtv~v~Pg~~~~v~~~~~~pG~w~~hCH~~~H~~~GM~ 322 (742)
T 2r7e_A 245 GLIGCHRKSVYWHVIGMGTTPEVHSIFL-EG-HTFLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGME 322 (742)
T ss_dssp CCEECSSSCEEEECCCCCSSSCCCCCCC-TT-CCCEETTEECCSCCCCTTCCCEEEECCCSCSEECCCCCSSSSSTTSCC
T ss_pred ceEEcCCCEEEEEEEeCCCCCcceEEEE-CC-CEEEEEeEecceEEeCCCcEEEEEEEeCCCeeEEEEeCChhHHhCCCe
Confidence 4678999999998753 1 344422 11 1111000 0111 1111112235666789999999999999999998
Q ss_pred EEEEecCC
Q 030729 120 VKITTFSG 127 (172)
Q Consensus 120 l~I~V~~~ 127 (172)
..+.|...
T Consensus 323 ~~~~V~~~ 330 (742)
T 2r7e_A 323 AYVKVDSC 330 (742)
T ss_dssp BCEEECCC
T ss_pred EEEEEecC
Confidence 88888754
No 110
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=23.32 E-value=42 Score=23.40 Aligned_cols=31 Identities=13% Similarity=0.376 Sum_probs=23.2
Q ss_pred EEEecCCCCCCCCCCccccc--CCCeEEecCEEEEE
Q 030729 27 QHTVGGSQGWVESADLNSWA--SGQTFKVGDQIVFK 60 (172)
Q Consensus 27 ~~~VG~~~GW~~~~nY~~Wa--~~~~f~vGDtLvF~ 60 (172)
..++||+.| ...++.|. ....+..||+|.++
T Consensus 38 ~~~l~DeTG---~I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 38 VGLLGDETG---IIKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEECTTC---CEEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEECCCC---eEEEEEECcccccccCCCCEEEEE
Confidence 457888877 23467886 34688999999987
No 111
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=23.10 E-value=23 Score=25.52 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.2
Q ss_pred CeEEecCEEEEE
Q 030729 49 QTFKVGDQIVFK 60 (172)
Q Consensus 49 ~~f~vGDtLvF~ 60 (172)
+.+++||+|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 567999999993
No 112
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=21.87 E-value=1e+02 Score=25.29 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=27.8
Q ss_pred EEEeecCceEEEEcCCCCCcc------CCCeEEEEecCCC
Q 030729 95 VVKLVKPGTRYFACGTSGHCE------QGMKVKITTFSGT 128 (172)
Q Consensus 95 ~v~l~~~G~~YFiC~~~~HC~------~GmKl~I~V~~~~ 128 (172)
.++.++||.+.|-|-+..|-. .||...|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 566788999999999999998 4678888887653
No 113
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=21.66 E-value=19 Score=26.77 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=30.6
Q ss_pred CCCCCCCCcccccCCCeEEecCEEEEEEc-----------cCCCcEEEeCCcccCC
Q 030729 34 QGWVESADLNSWASGQTFKVGDQIVFKYT-----------PGLHSVVELPSESAYK 78 (172)
Q Consensus 34 ~GW~~~~nY~~Wa~~~~f~vGDtLvF~y~-----------~~~H~V~~V~~~~~y~ 78 (172)
.||. +.||.+...-+..++||.+.|=.+ ++.--+.+|.+ +.|.
T Consensus 19 ~g~~-GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~-e~y~ 72 (145)
T 2hd9_A 19 HNVW-GVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTS-EPYV 72 (145)
T ss_dssp HCEE-EECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECS-CCEE
T ss_pred cCcc-ccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcC-CcEe
Confidence 4666 568988876689999999977554 23456777876 6665
No 114
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=21.34 E-value=35 Score=22.76 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=14.3
Q ss_pred CCeEEecCEEEEEEccC
Q 030729 48 GQTFKVGDQIVFKYTPG 64 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~ 64 (172)
-..+++||.|.|.+...
T Consensus 51 l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp ECCCCTTCEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEe
Confidence 46799999999999753
No 115
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=20.67 E-value=1.2e+02 Score=27.38 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCeEEecCEEEEEEccCC--------CcEEEeCCcccCCCCCC-C-CC-----CCccCCCC---cEEEeec------Cc-
Q 030729 48 GQTFKVGDQIVFKYTPGL--------HSVVELPSESAYKSCDL-G-TA-----KDSMNSGN---DVVKLVK------PG- 102 (172)
Q Consensus 48 ~~~f~vGDtLvF~y~~~~--------H~V~~V~~~~~y~~C~~-~-~~-----~~~~~~G~---~~v~l~~------~G- 102 (172)
..++++||+|++++.+.. |-+.+-.. .|.-.. + .+ -.....|. ..+++.+ +|
T Consensus 70 ~I~~~~Gd~v~v~~~N~l~~~~siH~HGl~~~~~---~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G~ 146 (647)
T 1sdd_B 70 VIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKS---SEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGS 146 (647)
T ss_dssp CEEEETTCEEEEEECCCSSSCBCCEEETCC------------------------CCBCTTCCEECCEECCTTTSCCSSSC
T ss_pred eEEEeCCCEEEEEEEECCCCceEEecCcceeCCC---CCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCCC
Confidence 478899999999998642 33332111 110000 0 00 00112233 2566665 47
Q ss_pred ---eEEEEcCCC--CCccCCCeEEEEecCCCC
Q 030729 103 ---TRYFACGTS--GHCEQGMKVKITTFSGTA 129 (172)
Q Consensus 103 ---~~YFiC~~~--~HC~~GmKl~I~V~~~~~ 129 (172)
++||-|-.. .|=..||...+.|.....
T Consensus 147 ~c~T~wYHsH~~~~~q~~~GL~G~lIV~~~~~ 178 (647)
T 1sdd_B 147 ACRAWAYYSAVNPEKDIHSGLIGPLLICRKGT 178 (647)
T ss_dssp SEEEEEEECCSSHHHHHTTTCEEEEEEECTTS
T ss_pred CceEEEEccCCCCcccccccCccCEEEeeCCC
Confidence 999999763 355679999999987644
No 116
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.24 E-value=38 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.1
Q ss_pred cccCCCeEEecCEEEEEEccC
Q 030729 44 SWASGQTFKVGDQIVFKYTPG 64 (172)
Q Consensus 44 ~Wa~~~~f~vGDtLvF~y~~~ 64 (172)
+.+.-..+++||.|.|.+...
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEEe
Confidence 344457899999999999753
Done!