BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030731
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DKD|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
pdb|4DKD|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 185
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 54 VDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD 105
V+ L+NV+Q L D+E++ K ++V L + +K ++ + L++ ++M+
Sbjct: 105 VETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNCFRVME 156
>pdb|4DKC|A Chain A, Crystal Structure Of Human Interleukin-34
pdb|4DKC|B Chain B, Crystal Structure Of Human Interleukin-34
pdb|4DKE|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKE|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKF|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab2
pdb|4DKF|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab2
Length = 190
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 54 VDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMD 105
V+ L+NV+Q L D+E++ K ++V L + +K ++ + L++ ++M+
Sbjct: 105 VETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNCFRVME 156
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 107 TEEAKAYQDEINAILGEKLSAED-EEEILAEFDNLEAQ-VFAYIQFELAHNFYYSVLPFP 164
T+ KAY D++NA+ G + EE ILA ++ E + +F H FY+ +
Sbjct: 69 TKHHKAYVDKLNALAGTTYDGKSIEEIILAVANDAEKKGLFNQAAQHFNHTFYFRCITPN 128
Query: 165 HFSLSKQF 172
++ K F
Sbjct: 129 GKAMPKSF 136
>pdb|3DKW|A Chain A, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|B Chain B, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|C Chain C, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|D Chain D, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|E Chain E, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|F Chain F, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|G Chain G, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|H Chain H, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|I Chain I, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|J Chain J, Crystal Structure Of Dnr From Pseudomonas Aeruginosa
Length = 227
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 121 LGEKLSAEDEEEILAEFD--NLEAQVFAYIQFELAHNFYY 158
L E LS +E+LA D NL+ + + Q E AH FYY
Sbjct: 16 LFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYY 55
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 103 LMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFA 146
+MD + + Q+ N IL E+ SAE+ EIL E QV
Sbjct: 13 IMDSYNKQRMPQEITNKILKEEFSAEENFEILTEMATNHVQVLV 56
>pdb|2Z69|A Chain A, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
pdb|2Z69|B Chain B, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
pdb|2Z69|C Chain C, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
Length = 154
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 121 LGEKLSAEDEEEILAEFD--NLEAQVFAYIQFELAHNFYY 158
L E LS +E+LA D NL+ + + Q E AH FYY
Sbjct: 19 LFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYY 58
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 63 QQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED--VQKLMDDTEEAKAYQDE 116
++ ++E A +QK + + +++ + IQ E+ L+D ++L ++ E+A+ QDE
Sbjct: 397 EETKNMEAAERQK-LEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDE 451
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,770,889
Number of Sequences: 62578
Number of extensions: 114556
Number of successful extensions: 626
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 36
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)