BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030731
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2
OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1
Length = 216
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/133 (87%), Positives = 124/133 (93%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y QL+ VIEAEKQAARDLIR+KRKDRALLALKKK+ QEELLKQVD WLINVEQQLADIE
Sbjct: 31 YQQQLEKVIEAEKQAARDLIREKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIE 90
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
L SKQKAVFESLK G NAIKAIQSE+NL+DVQKLMDDT EAKAYQDE++AILGEKLSAED
Sbjct: 91 LTSKQKAVFESLKQGNNAIKAIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAED 150
Query: 130 EEEILAEFDNLEA 142
EEEILAEFDNLE+
Sbjct: 151 EEEILAEFDNLES 163
>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1
OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
Length = 219
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 125/136 (91%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y +L+ VIEAEKQAARDLIR+KRKDRALLAL+KK+ QEELLKQVD W+INVEQQL DIE
Sbjct: 31 YQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIE 90
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
L SKQKAVFESLK G +AIKAIQSE++L+DVQKLMDDT +AKAYQDE+NAILGEKLSAED
Sbjct: 91 LTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAED 150
Query: 130 EEEILAEFDNLEAQVF 145
EE+ILAEFDNLE+Q+
Sbjct: 151 EEDILAEFDNLESQLI 166
>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum
GN=chmp6 PE=3 SV=2
Length = 218
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 85/122 (69%)
Query: 25 ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84
A++ + +K++ALLALKKKK QE++L + L N+E+ +A++E A Q +FESLK G
Sbjct: 48 AKECSKAGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQG 107
Query: 85 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQV 144
++K IQ E++LEDV+ LM++T EA YQ++I+ L K S E+E+++L E D +E Q+
Sbjct: 108 NESLKEIQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQL 167
Query: 145 FA 146
A
Sbjct: 168 NA 169
>sp|O94318|VPS20_SCHPO Vacuolar protein sorting-associated protein 20
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps20 PE=3 SV=1
Length = 226
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 78/131 (59%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
YS +L+ + + E AR +R K AL ALK KK L+ Q G L N+EQ L+ IE
Sbjct: 28 YSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIE 87
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
QK V L+ GTN I+ +Q+++ LE V ++ +D +EA +Y DE+N +L ++S +
Sbjct: 88 FTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRDQ 147
Query: 130 EEEILAEFDNL 140
E+EI E D+L
Sbjct: 148 EDEIQEELDSL 158
>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6
PE=2 SV=3
Length = 200
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 82/129 (63%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ +E E++ AR L+++ +K++A+L LKKK+ QE+LL + D + N+E+ + DIE
Sbjct: 33 YQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
+ V E LK G + + +++E+V++++ +T++A YQ +I+ IL L+ ED
Sbjct: 93 FTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLTEED 152
Query: 130 EEEILAEFD 138
E+ IL E +
Sbjct: 153 EDAILEELN 161
>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1
SV=3
Length = 201
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 76/128 (59%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ +E E+ AR L+R RK+RA L LKKK+ QE+LL + + + ++E + IE
Sbjct: 33 YQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
+ V E L+ G + + +++E+V++++D+T+EA YQ +I+ +L + ED
Sbjct: 93 FTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQED 152
Query: 130 EEEILAEF 137
E+ IL E
Sbjct: 153 EDAILEEL 160
>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2
SV=3
Length = 201
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 76/128 (59%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ +E E+ AR L+R RK+RA L LKKK+ QE+LL + + + ++E + IE
Sbjct: 33 YQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
+ V E L+ G + + +++E+V++++D+T+EA YQ +I+ +L + ED
Sbjct: 93 FTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQED 152
Query: 130 EEEILAEF 137
E+ IL E
Sbjct: 153 EDAILEEL 160
>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2
SV=2
Length = 200
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 77/129 (59%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ +E E+ AR L+R RK+RA L LKKK+ +E+LL + + + ++E + IE
Sbjct: 33 YQKRVTQQLERERALARQLLRDGRKERAKLLLKKKRYREQLLDRTENQISSLEAMVQSIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
+ V E L+ G + + +++E+V++++D+T+EA YQ +I+ +L + ED
Sbjct: 93 FTQIEMKVMEGLQVGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGNFTQED 152
Query: 130 EEEILAEFD 138
E+ IL E +
Sbjct: 153 EDAILEELN 161
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 86/129 (66%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ ++ E+Q A+ L++ +KD+ALL LKKK+ Q++LL++ + + N+E+ + DIE
Sbjct: 33 YQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQDQLLEKTENQISNLERMVQDIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAED 129
A + V E LK G + +K + +++E+V+K+MD+T +A YQ +I+ +L L+ ED
Sbjct: 93 FAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSLTQED 152
Query: 130 EEEILAEFD 138
EE +LAE +
Sbjct: 153 EEAVLAELE 161
>sp|Q04272|VPS20_YEAST Vacuolar protein sorting-associated protein 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS20 PE=1
SV=3
Length = 221
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKD-----RALLALKKKKAQEELLKQVDGWLINVEQQ 64
++ + D +I EK +DLIR+ ++ + LK+ QE LL+Q LIN+E
Sbjct: 30 FTRRTDNLILVEKSQLKDLIRKNPENYKSNMKVRFLLKRIHYQEHLLQQASDQLINLENM 89
Query: 65 LADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 124
++ +E +K LK+G +K + E + +V +LMDD ++ AYQ+EIN L
Sbjct: 90 VSTLEFKMVEKQFINGLKNGNEILKKLNKEFS--NVDELMDDVQDQIAYQNEINETLSRS 147
Query: 125 L--SAEDEEEILAEFDNLEAQV 144
L ++ E+++ E D LE+++
Sbjct: 148 LVGTSNYEDDLDKELDALESEL 169
>sp|Q6GMA4|CHM6A_XENLA Charged multivesicular body protein 6-A OS=Xenopus laevis
GN=chmp6-a PE=2 SV=3
Length = 200
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 74/117 (63%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ ++ E++ A+ L+ +K++A L LKKK+ QE+LL++ D + N+E+ + DIE
Sbjct: 33 YQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVEDIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
A + V E LK G +K + +++E+V+++MD+T+E YQ +I+ +L L+
Sbjct: 93 FAQIEMKVIEGLKVGNECLKKMHEVMSIEEVERIMDETQEGIEYQRQIDEMLSGSLT 149
>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snf7 PE=3 SV=1
Length = 222
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 37 ALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96
AL ALK+KK E L +++G N+EQQL I+ A+ ++++ G A+K+IQ ++
Sbjct: 60 ALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMD 119
Query: 97 LEDVQKLMDDTEEAKAYQDEINAILGEK--LSAE-DEEEILAEFDNLEAQVFAYIQFELA 153
+ V ++MD + + +EI+ ++ L+AE DE+E+ E D L+ Q EL
Sbjct: 120 ADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQ-------QMELD 172
Query: 154 HNFYYSVLPFPH 165
+ P H
Sbjct: 173 SKMLGAEKPPVH 184
>sp|Q6NU11|CHM6B_XENLA Charged multivesicular body protein 6-B OS=Xenopus laevis
GN=chmp6-b PE=2 SV=3
Length = 200
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 74/117 (63%)
Query: 10 YSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69
Y ++ ++ E++ A+ L+ +K++A L LKKK+ QE+LL++ D + N+E+ + DIE
Sbjct: 33 YQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQEQLLEKTDNQISNLEKMVDDIE 92
Query: 70 LASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
A + V E LK G +K + +++E+V+K+M++T+E YQ +I+ +L L+
Sbjct: 93 FAQIEMKVIEGLKVGNEWLKKMHEVMSIEEVEKIMEETQEGIEYQRQIDEMLSGSLT 149
>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1
OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1
Length = 213
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 16 AVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQK 75
A E EK A++ R K K A+ LK+K+ E+ ++Q+ + + + Q+ +E A
Sbjct: 41 ATGEVEK--AKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATT 98
Query: 76 AVFESLKSGTNAIKAIQSEINLEDVQKLMDD----TEEAKAYQDEINAILG 122
++L++G +A+KA+Q N++DV K MD+ TE K Q+ ++A G
Sbjct: 99 ETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149
>sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2
OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
Length = 219
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 20 AEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFE 79
AE + A++ R K K A+ LK+K+ E ++Q+ + + + Q+ +E A +
Sbjct: 42 AEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVD 101
Query: 80 SLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILA 135
+L+SG +A+KA+Q N++DV K MD+ E +I L + A DE+E+ A
Sbjct: 102 ALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAA 160
>sp|P39929|SNF7_YEAST Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF7 PE=1 SV=1
Length = 240
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 13 QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELAS 72
L I ++ AR + + K A ALKKKK E+LL +V+G + ++EQQL IE A+
Sbjct: 39 HLRTQITNQENEARIFLTKGNKVMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESAN 98
Query: 73 KQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 117
+++ G A+K I S ++++ V + MD+ E DEI
Sbjct: 99 LNLETMRAMQEGAKAMKTIHSGLDIDKVDETMDEIREQVELGDEI 143
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B
PE=2 SV=1
Length = 227
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 14 LDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASK 73
L+ IE E AAR K K AL ALK+KK E+ L Q+DG L +E Q +E A+
Sbjct: 45 LEKKIEQELAAARKH-GTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANT 103
Query: 74 QKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
V +++ A+KA ++++ V +LM D E + DEI+ + + +
Sbjct: 104 NTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%)
Query: 14 LDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASK 73
L + +++++AR + + K+ A ALK+KK E L ++D + ++EQQL IE A+
Sbjct: 39 LQTQMTSQEESARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANL 98
Query: 74 QKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL 125
+++K G +A+K I +++E V + MD+ E +EI+ + L
Sbjct: 99 NLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 13 QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELAS 72
L I A++ AR + + K A ALKKKK E L +++ + ++EQQL IE A+
Sbjct: 37 HLQGQITAQENEARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESAN 96
Query: 73 KQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEIN 118
++K G A+K+I S ++++ V + MD+ E +EI+
Sbjct: 97 LNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEIS 142
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 40 ALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLED 99
ALK+KK E L +++ + ++E QL IE A+ +++K G A+K I E +++
Sbjct: 63 ALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDK 122
Query: 100 VQKLMDDTEEAKAYQDEINAILGEKLSAE--DEEEILAEF 137
V+ MDD E DEI+ + + E DE+E+ E
Sbjct: 123 VENTMDDIREQVELADEISEAISRPVGTEFVDEDELDEEL 162
>sp|Q5ABD0|SNF7_CANAL Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SNF7 PE=3 SV=1
Length = 226
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 25 ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84
AR + K+ A ALK+KK E L +V+ + +E QL IE A+ +++K G
Sbjct: 49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQG 108
Query: 85 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE 128
A+K I E +++ V+ MD+ E DEI+ + + E
Sbjct: 109 AKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVGNE 152
>sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum
GN=chmp4 PE=3 SV=1
Length = 215
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 18 IEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAV 77
+E E++ A+ L+ QKRK ALL LKK+ + + ++ G + QQ+ +E A +
Sbjct: 38 LEKEQEKAKVLVSQKRKREALLCLKKRNNFQNEVTKLQGSYDTLNQQIFALENAKMNMEI 97
Query: 78 FESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI-NAI 120
S++ G +++ + + ++ V ++++ +E +EI NAI
Sbjct: 98 MNSMRDGARSLRELHGHLTIDKVDDVIEEIQEQMEIHEEISNAI 141
>sp|Q86K93|CHMP7_DICDI Charged multivesicular body protein 7 OS=Dictyostelium discoideum
GN=chmp7 PE=3 SV=1
Length = 477
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 8/131 (6%)
Query: 18 IEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAV 77
IE ++ IR K+K+ ALL LKKKK E +L++ N+ + L IE A + +
Sbjct: 271 IEEISNTIKESIRIKQKNHALLQLKKKKLLESILEKRATASTNIHEILFSIESAKSNQQI 330
Query: 78 FESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILG------EKLSAE--D 129
ESL +G + +K + EI+++ V ++DD ++A Q EI+ + E LS+ D
Sbjct: 331 IESLCTGVSTLKKVNQEISVDQVDSILDDYQDAITNQREIDDAMKSGFNSVESLSSADID 390
Query: 130 EEEILAEFDNL 140
E+++ E D +
Sbjct: 391 EDQLEKELDQM 401
>sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SNF7 PE=3 SV=1
Length = 220
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 37 ALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96
A+ AL++KKA E L ++ G + +E Q+ IE A+ ++K G +A+K I S +
Sbjct: 61 AMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLT 120
Query: 97 LEDVQKLMDDTEE 109
E V MD E
Sbjct: 121 AEGVDATMDKIRE 133
>sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1
Length = 220
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 37 ALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96
A+ AL++KKA E L ++ G + +E Q+ IE A+ ++K G +A+K I S +
Sbjct: 61 AMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLT 120
Query: 97 LEDVQKLMDDTEE 109
E V MD E
Sbjct: 121 AEGVDATMDKIRE 133
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
Query: 19 EAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF 78
E K+ AR R +K AL +LK K+ E+ ++ + L V+ L I + + VF
Sbjct: 263 ERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVF 322
Query: 79 ESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILA 135
+ ++G A+K ++ +E + L+D +E QDE++ L ++ D EE+
Sbjct: 323 NAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEK 382
Query: 136 EFDNL----EAQVFAYIQFELAHNFYYSVLPFPHF 166
E D L + + ++ Y + +P P
Sbjct: 383 ELDILLQDTTTEPLSLLETPQETTLYTNSVPKPRI 417
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B
PE=1 SV=1
Length = 224
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A+ V +++ A+KA
Sbjct: 60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAA 119
Query: 92 QSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
++++ V +LM D + + +EI+ + + +
Sbjct: 120 HDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b
PE=2 SV=2
Length = 224
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A+ V +++ A+KA
Sbjct: 60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAA 119
Query: 92 QSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
++++ V +LM D + + +EI+ + + +
Sbjct: 120 HDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c
PE=2 SV=1
Length = 227
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALKKKK E+ L Q+DG L +E Q +E + V +++ A+KA
Sbjct: 64 KNKRAALQALKKKKRLEKQLAQIDGTLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAA 123
Query: 92 QSEINLEDVQKLMDDTEEAKAYQDEIN 118
++LE + LM D E + EI+
Sbjct: 124 HENMDLEKIDDLMQDIHEQQDVAQEIS 150
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b
PE=2 SV=1
Length = 222
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A+ V +++ A+KA
Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAA 117
Query: 92 QSEINLEDVQKLMDD 106
+++E V +LM D
Sbjct: 118 HDNMDIEKVDELMQD 132
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A+ V +++ A+KA
Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAA 117
Query: 92 QSEINLEDVQKLMDD 106
+++E V +LM D
Sbjct: 118 HDNMDIEKVDELMQD 132
>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c
PE=2 SV=1
Length = 232
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 37 ALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96
AL ALK+KK E+ L QVDG L +E Q +E + V ++ A+KA+ ++
Sbjct: 65 ALQALKRKKRFEKQLTQVDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHDNMD 124
Query: 97 LEDVQKLMDDTEEAKAYQDEINAILGEKL 125
L + LM D E + EI+ +++
Sbjct: 125 LNKIDDLMQDITEQQDIAQEISEAFSQRV 153
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 19 EAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF 78
E K AR R +K AL LK K+ E ++++ L V+ L I + + VF
Sbjct: 261 EKCKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVF 320
Query: 79 ESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAIL-GEKLSA--EDEEEILA 135
+ ++G A+K ++ +E + L+D +E QDE+ L G ++ D EE+
Sbjct: 321 NAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSEELEK 380
Query: 136 EFDNL 140
E D+L
Sbjct: 381 ELDSL 385
>sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b
PE=2 SV=1
Length = 220
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A V +++ A+KA
Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAA 117
Query: 92 QSEINLEDVQKLMDDTEEAKAYQDEIN 118
++++ V +LM D E + EI+
Sbjct: 118 HDNMDIDKVDELMQDIIEQQELAQEIS 144
>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2
SV=1
Length = 453
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 19 EAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF 78
E K+ AR R +K AL +LK K+ E+ ++ + L V+ L I + + VF
Sbjct: 263 ERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVF 322
Query: 79 ESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILA 135
+ ++G A+K ++ +E + L+D +E QDE++ L ++ D EE+
Sbjct: 323 NAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEK 382
Query: 136 EFDNL 140
E D L
Sbjct: 383 ELDIL 387
>sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus
GN=Chmp4c PE=2 SV=1
Length = 232
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 34 KDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQS 93
K AL ALK+KK E+ L Q+DG L +E Q +E + V ++ A+KA+
Sbjct: 62 KRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHE 121
Query: 94 EINLEDVQKLMDDTEEAKAYQDEINAILGEKL 125
++L + LM D E + EI+ +++
Sbjct: 122 NMDLNKIDDLMQDITEQQDIAQEISEAFSQRV 153
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 19 EAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF 78
E K+ AR R +K AL +LK K+ E+ ++ + L V+ L I + + VF
Sbjct: 263 ERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVF 322
Query: 79 ESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DEEEILA 135
+ ++G A+K ++ +E + L+D +E QDE++ L ++ D EE+
Sbjct: 323 NAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEK 382
Query: 136 EFDNL 140
E D L
Sbjct: 383 ELDIL 387
>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c
PE=2 SV=1
Length = 224
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A+ V +++ A+K
Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTA 117
Query: 92 QSEINLEDVQKLMDDTEEAKAYQDEIN 118
++++ V LM D E + EI+
Sbjct: 118 HENMDIDKVDDLMQDITEQQELAQEIS 144
>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2
SV=1
Length = 222
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 14 LDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASK 73
L+ IE E QAA+ K K AL AL++KK E+ L Q DG L +E Q IE A+
Sbjct: 40 LEQKIEQELQAAKKH-GTKNKRAALQALRRKKRLEQQLAQTDGTLSTLEFQREAIENATT 98
Query: 74 QKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE----AKAYQDEINAILG 122
V +++ +K +++++ V +LM D E A+ D I+ +G
Sbjct: 99 NAEVLRTMELAAQGLKKAYQDMDIDKVDELMADITEQQEVAQQISDAISRPVG 151
>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C
PE=1 SV=1
Length = 233
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 37 ALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96
AL ALK+KK E+ L Q+DG L +E Q +E + V ++ A+K++ ++
Sbjct: 65 ALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMD 124
Query: 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDE 130
L + LM + E + EI+ +++ D+
Sbjct: 125 LNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDD 158
>sp|P59074|CG301_HUMAN Putative protein CGI-301 OS=Homo sapiens GN=CGI-301 PE=5 SV=1
Length = 171
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL ALK+KK E+ L Q+DG L +E Q +E A+ V +++ S A KA
Sbjct: 20 KNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAA 79
Query: 92 QSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126
++++ V +LM D + + +EI+ + + +
Sbjct: 80 HDNMDIDKVDELMQDIADQQELGEEISTAISKPVG 114
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A
PE=1 SV=3
Length = 222
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 32 KRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91
K K AL AL++KK E+ L Q DG L +E Q IE A+ V +++ ++K
Sbjct: 57 KNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKA 116
Query: 92 QSEINLEDVQKLMDDTEE----AKAYQDEINAILG 122
+++++ V +LM D E A+ D I+ +G
Sbjct: 117 YQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 25 ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84
AR R K++AL L+K+K E + ++ N++ L I A + V + + G
Sbjct: 254 ARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETDRKVVSAYQMG 313
Query: 85 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQV 144
+A+K ++ LE + ++D +E QD+++ L A+ + D+LE ++
Sbjct: 314 VSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSVTDAD------VDSDDLEREL 367
Query: 145 FAYIQFE 151
+Q E
Sbjct: 368 NEILQNE 374
>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2
SV=1
Length = 457
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%)
Query: 19 EAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF 78
E KQ A+ L+++ +K +AL L+ K E+ ++ L V+ L I + + V
Sbjct: 254 EKCKQQAKSLLKEGKKSQALRCLRGSKRVEKKADRLFAQLETVKGILDRIANSQTDRLVM 313
Query: 79 ESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAIL 121
++ ++G A++ + +E + L+D +E QDE+N L
Sbjct: 314 QAYQAGVAALRISLKGVTVERAENLVDQIQELCDTQDEVNQTL 356
>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5
PE=2 SV=1
Length = 219
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 15 DAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQ 74
D + + + A+++++QK AL LK+K+ E+ + N+EQ I+
Sbjct: 47 DQIKKMREGPAKNMVKQK----ALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDT 102
Query: 75 KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE--DEEE 132
K +++K G +K E+ ++ ++ L D E+ +EI LG DE++
Sbjct: 103 KTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPELDEDD 162
Query: 133 ILAEFDNLEAQVFA 146
+ AE D L ++ A
Sbjct: 163 LEAELDALGDELLA 176
>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2
SV=1
Length = 219
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 15 DAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQ 74
D + + + A+++++QK AL LK+K+ E+ + N+EQ I+
Sbjct: 47 DQIKKMREGPAKNMVKQK----ALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDT 102
Query: 75 KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE--DEEE 132
K +++K G +K E+ ++ ++ L D E+ +EI LG DE++
Sbjct: 103 KTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPELDEDD 162
Query: 133 ILAEFDNLEAQVFA 146
+ AE D L ++ A
Sbjct: 163 LEAELDALGDELLA 176
>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster
GN=CG6259 PE=1 SV=2
Length = 226
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 25 ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84
A++ ++QK AL LK+KKA E+ + + N+EQ + +A ++K G
Sbjct: 57 AKNSVKQK----ALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKDG 112
Query: 85 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK--LSAEDEEEILAEFDNL 140
+K +IN++ ++ + DD + DE+ LG + D++++ AE D L
Sbjct: 113 VKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMPEVDDDDLQAELDAL 170
>sp|Q8CNW9|Y1383_STAES Uncharacterized peptidase SE_1383 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_1383 PE=3 SV=2
Length = 351
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 81 LKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEE 131
LK+ T AIK+I+ + ++D+ K+ D E Y D LG L E+ E
Sbjct: 248 LKAETEAIKSIKPGVTIKDIDKIARDIIEEAGYGDYFPHRLGHGLGLEEHE 298
>sp|Q5HNJ7|Y1271_STAEQ Uncharacterized peptidase SERP1271 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP1271 PE=3 SV=1
Length = 351
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 81 LKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEE 131
LK+ T AIK+I+ + ++D+ K+ D E Y D LG L E+ E
Sbjct: 248 LKAETEAIKSIKPGVTIKDIDKIARDIIEEAGYGDYFPHRLGHGLGLEEHE 298
>sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum
GN=chmp5 PE=3 SV=1
Length = 215
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 15 DAVIEAEKQA-ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASK 73
D I+A + A++ I+QK A+ L++KK E Q+ N+EQ E
Sbjct: 45 DKQIKATRPGPAQNAIKQK----AIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRD 100
Query: 74 QKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE---DE 130
++K G +K I +EDV + D+ ++ Y +EI LG DE
Sbjct: 101 TITTVSAMKQGAKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDE 160
Query: 131 EEILAEFDN------LEAQVFAYI 148
E+ AE + LEA + +Y+
Sbjct: 161 SELEAELMSMGEELELEASMPSYL 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,855,624
Number of Sequences: 539616
Number of extensions: 2089168
Number of successful extensions: 15393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 573
Number of HSP's that attempted gapping in prelim test: 14918
Number of HSP's gapped (non-prelim): 1029
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)