Query 030731
Match_columns 172
No_of_seqs 115 out of 699
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00446 vacuolar sorting prot 100.0 9.6E-35 2.1E-39 231.6 20.5 147 2-148 34-181 (191)
2 KOG2910 Uncharacterized conser 100.0 4.4E-34 9.5E-39 224.6 20.2 155 2-158 23-177 (209)
3 PTZ00464 SNF-7-like protein; P 100.0 1.8E-32 4E-37 222.0 21.8 167 4-171 24-201 (211)
4 KOG1656 Protein involved in gl 100.0 4.5E-32 9.7E-37 215.2 20.5 147 6-153 32-182 (221)
5 PF03357 Snf7: Snf7; InterPro 100.0 1.2E-28 2.7E-33 191.2 6.7 154 3-156 9-167 (171)
6 KOG2911 Uncharacterized conser 99.9 1.3E-26 2.9E-31 201.3 17.5 158 4-161 242-403 (439)
7 KOG1655 Protein involved in va 99.9 3.3E-22 7.1E-27 158.2 18.4 139 6-145 30-175 (218)
8 KOG3230 Vacuolar assembly/sort 99.7 1.4E-14 3.1E-19 115.0 18.4 155 7-161 28-183 (224)
9 KOG3231 Predicted assembly/vac 99.1 8E-09 1.7E-13 80.7 16.3 158 13-170 33-193 (208)
10 KOG3229 Vacuolar sorting prote 98.8 5.3E-07 1.2E-11 72.6 16.7 141 7-147 30-175 (227)
11 KOG3232 Vacuolar assembly/sort 98.5 0.00014 3.1E-09 57.4 20.6 138 7-152 21-167 (203)
12 PF04012 PspA_IM30: PspA/IM30 98.1 0.00032 6.9E-09 56.9 16.0 140 2-143 51-204 (221)
13 PRK10698 phage shock protein P 97.9 0.0026 5.7E-08 52.2 18.2 142 3-144 53-217 (222)
14 TIGR02977 phageshock_pspA phag 97.7 0.0022 4.8E-08 52.3 13.9 135 3-141 53-201 (219)
15 COG5491 VPS24 Conserved protei 97.2 0.045 9.7E-07 44.5 15.4 105 49-154 42-154 (204)
16 KOG1655 Protein involved in va 96.9 0.03 6.5E-07 45.2 12.1 139 4-145 21-168 (218)
17 PTZ00464 SNF-7-like protein; P 96.8 0.08 1.7E-06 43.2 14.4 44 53-96 72-115 (211)
18 COG1842 PspA Phage shock prote 96.8 0.22 4.8E-06 41.1 17.8 136 6-142 56-205 (225)
19 PF03357 Snf7: Snf7; InterPro 96.7 0.0036 7.7E-08 48.1 5.1 152 6-169 5-169 (171)
20 KOG3230 Vacuolar assembly/sort 95.3 1.2 2.6E-05 36.1 15.2 146 4-157 32-183 (224)
21 COG5491 VPS24 Conserved protei 94.3 1.4 3E-05 35.9 12.0 140 3-147 8-151 (204)
22 COG5665 NOT5 CCR4-NOT transcri 91.8 3.3 7.1E-05 37.0 11.2 51 2-52 28-78 (548)
23 PF07743 HSCB_C: HSCB C-termin 90.7 2.4 5.2E-05 28.5 7.6 50 5-54 27-76 (78)
24 KOG2911 Uncharacterized conser 88.0 17 0.00037 32.8 12.7 152 6-171 237-402 (439)
25 smart00685 DM14 Repeats in fly 87.7 3.9 8.5E-05 26.8 6.5 43 12-54 2-44 (59)
26 PTZ00446 vacuolar sorting prot 85.9 17 0.00036 29.3 15.6 118 4-127 29-155 (191)
27 KOG0804 Cytoplasmic Zn-finger 84.6 32 0.00068 31.4 13.0 89 2-92 332-423 (493)
28 TIGR00714 hscB Fe-S protein as 78.7 17 0.00037 28.1 8.0 53 6-58 101-153 (157)
29 PRK01773 hscB co-chaperone Hsc 76.3 25 0.00055 27.7 8.5 56 6-61 115-170 (173)
30 PF04065 Not3: Not1 N-terminal 75.7 23 0.00049 29.4 8.3 22 92-113 191-212 (233)
31 KOG2150 CCR4-NOT transcription 75.7 71 0.0015 30.0 13.4 115 2-116 38-193 (575)
32 PRK14162 heat shock protein Gr 75.4 31 0.00067 27.8 8.8 21 5-25 42-62 (194)
33 PRK03578 hscB co-chaperone Hsc 73.4 32 0.00069 27.1 8.4 56 5-60 117-173 (176)
34 PRK05014 hscB co-chaperone Hsc 73.1 34 0.00074 26.8 8.4 55 7-61 115-169 (171)
35 PF08651 DASH_Duo1: DASH compl 73.1 23 0.00051 24.3 6.6 63 47-124 3-65 (78)
36 PRK11020 hypothetical protein; 72.1 38 0.00082 25.2 8.0 53 6-58 2-54 (118)
37 PF00804 Syntaxin: Syntaxin; 71.3 25 0.00054 23.9 6.7 49 97-145 6-55 (103)
38 PF06248 Zw10: Centromere/kine 70.6 91 0.002 28.9 14.4 90 4-93 9-117 (593)
39 cd07637 BAR_ACAP3 The Bin/Amph 67.5 57 0.0012 26.3 8.8 74 2-93 2-75 (200)
40 PRK04778 septation ring format 66.8 1.1E+02 0.0024 28.4 15.3 138 5-146 108-267 (569)
41 PRK01356 hscB co-chaperone Hsc 65.0 53 0.0011 25.6 7.9 51 6-56 110-160 (166)
42 PRK14146 heat shock protein Gr 64.2 76 0.0017 26.0 9.0 51 48-98 104-154 (215)
43 cd00632 Prefoldin_beta Prefold 63.9 50 0.0011 23.4 9.8 91 47-145 11-101 (105)
44 PF15397 DUF4618: Domain of un 61.4 1E+02 0.0022 26.1 20.4 38 131-168 210-247 (258)
45 PF05852 DUF848: Gammaherpesvi 61.4 74 0.0016 24.6 9.6 27 96-122 87-113 (146)
46 KOG3231 Predicted assembly/vac 60.3 86 0.0019 25.0 12.1 26 4-29 31-65 (208)
47 PF11068 YlqD: YlqD protein; 59.9 71 0.0015 24.1 7.5 65 5-69 23-87 (131)
48 PF03908 Sec20: Sec20; InterP 59.0 58 0.0012 22.6 8.0 61 39-99 9-70 (92)
49 PF01025 GrpE: GrpE; InterPro 57.6 58 0.0013 24.7 6.9 23 75-97 88-110 (165)
50 PRK14140 heat shock protein Gr 54.6 1.1E+02 0.0024 24.5 8.6 18 6-23 41-58 (191)
51 PF05659 RPW8: Arabidopsis bro 54.4 96 0.0021 23.7 10.1 72 21-93 74-145 (147)
52 cd04779 HTH_MerR-like_sg4 Heli 50.9 1E+02 0.0023 23.1 9.4 70 22-91 59-130 (134)
53 TIGR03504 FimV_Cterm FimV C-te 50.7 23 0.0005 21.6 2.9 22 22-43 3-24 (44)
54 PRK14163 heat shock protein Gr 50.5 1.4E+02 0.0031 24.5 9.8 46 56-101 91-136 (214)
55 PF08172 CASP_C: CASP C termin 49.9 37 0.00081 28.3 5.0 29 2-30 86-114 (248)
56 COG0576 GrpE Molecular chapero 49.8 1.3E+02 0.0029 24.0 9.3 55 44-98 82-137 (193)
57 PRK14155 heat shock protein Gr 49.3 1.4E+02 0.0031 24.2 9.8 97 4-100 15-118 (208)
58 PF06160 EzrA: Septation ring 49.2 2.2E+02 0.0048 26.4 17.1 139 5-145 104-262 (560)
59 PRK14148 heat shock protein Gr 48.7 1.4E+02 0.0031 24.0 9.0 19 10-28 41-59 (195)
60 KOG0972 Huntingtin interacting 48.4 1.9E+02 0.004 25.3 11.9 107 5-125 227-335 (384)
61 PRK14149 heat shock protein Gr 48.3 1.2E+02 0.0027 24.3 7.6 54 48-101 86-139 (191)
62 TIGR03687 pupylate_cterm ubiqu 48.1 28 0.0006 20.1 2.7 18 98-115 3-20 (33)
63 KOG3584 cAMP response element 45.7 82 0.0018 27.3 6.4 32 31-62 297-328 (348)
64 PHA03188 UL14 tegument protein 45.6 1.6E+02 0.0035 23.8 13.2 62 80-144 87-152 (199)
65 PRK14159 heat shock protein Gr 44.2 1.6E+02 0.0035 23.3 9.1 54 48-101 73-126 (176)
66 PF04108 APG17: Autophagy prot 43.0 1.8E+02 0.0039 25.9 8.6 45 95-144 119-163 (412)
67 TIGR02338 gimC_beta prefoldin, 42.4 1.3E+02 0.0027 21.6 9.8 92 46-145 14-105 (110)
68 PF10475 DUF2450: Protein of u 42.4 2.1E+02 0.0045 24.0 14.2 84 40-123 55-140 (291)
69 PRK14143 heat shock protein Gr 42.3 2E+02 0.0043 23.9 9.1 17 11-27 69-85 (238)
70 PRK14145 heat shock protein Gr 41.9 1.9E+02 0.004 23.4 9.0 12 13-24 49-60 (196)
71 PF15082 DUF4549: Domain of un 40.4 48 0.001 25.4 3.8 36 130-165 16-51 (144)
72 KOG2910 Uncharacterized conser 40.4 2E+02 0.0044 23.4 14.8 87 33-122 42-133 (209)
73 PRK10869 recombination and rep 40.4 3.1E+02 0.0066 25.5 12.3 74 50-125 209-288 (553)
74 PRK00294 hscB co-chaperone Hsc 39.6 1.9E+02 0.004 22.7 8.2 49 12-60 117-170 (173)
75 COG5124 Protein predicted to b 39.4 89 0.0019 25.2 5.3 108 3-123 90-199 (209)
76 PRK14153 heat shock protein Gr 37.5 2.2E+02 0.0047 23.0 8.4 12 14-25 38-49 (194)
77 PF08006 DUF1700: Protein of u 36.0 1.2E+02 0.0026 23.4 5.7 42 87-137 9-50 (181)
78 PF09340 NuA4: Histone acetylt 35.5 1.2E+02 0.0026 20.8 4.9 30 38-67 5-34 (80)
79 PF10475 DUF2450: Protein of u 34.8 2.7E+02 0.0059 23.3 13.7 64 50-113 116-179 (291)
80 PRK03830 small acid-soluble sp 34.0 1.5E+02 0.0034 20.2 5.5 52 97-148 8-66 (73)
81 PF04100 Vps53_N: Vps53-like, 33.9 3.3E+02 0.0072 24.0 15.0 65 49-113 102-172 (383)
82 KOG0995 Centromere-associated 33.1 4.3E+02 0.0093 25.0 15.8 117 6-122 225-356 (581)
83 PF04508 Pox_A_type_inc: Viral 33.0 63 0.0014 17.2 2.5 19 4-22 3-21 (23)
84 PRK14154 heat shock protein Gr 32.9 2.7E+02 0.0059 22.7 9.7 20 5-24 55-74 (208)
85 PF08651 DASH_Duo1: DASH compl 32.8 1.6E+02 0.0035 20.1 8.4 26 48-73 18-43 (78)
86 TIGR00444 mazG MazG family pro 32.6 2E+02 0.0043 24.0 6.7 58 79-141 131-189 (248)
87 PRK14127 cell division protein 32.4 2E+02 0.0044 21.0 7.0 28 87-114 15-42 (109)
88 PRK04406 hypothetical protein; 31.1 1.4E+02 0.0031 20.2 4.7 50 97-146 6-57 (75)
89 PF06698 DUF1192: Protein of u 30.7 1.5E+02 0.0033 19.3 4.5 22 5-26 24-45 (59)
90 PRK08097 ligB NAD-dependent DN 30.7 1.6E+02 0.0034 27.7 6.4 78 94-171 24-104 (562)
91 PRK14064 exodeoxyribonuclease 30.4 1.5E+02 0.0032 20.1 4.7 44 53-96 7-51 (75)
92 PF14282 FlxA: FlxA-like prote 30.1 2.1E+02 0.0045 20.5 7.8 59 7-66 17-75 (106)
93 PRK05560 DNA gyrase subunit A; 29.5 5.5E+02 0.012 25.1 11.9 89 57-147 381-477 (805)
94 PRK14147 heat shock protein Gr 29.3 2.8E+02 0.0061 21.8 9.2 18 6-23 22-39 (172)
95 cd00446 GrpE GrpE is the adeni 29.2 2.4E+02 0.0051 20.9 7.2 49 48-96 35-83 (137)
96 PRK09631 DNA topoisomerase IV 28.9 5.2E+02 0.011 24.7 11.1 44 98-146 404-447 (635)
97 PRK10547 chemotaxis protein Ch 28.3 3.1E+02 0.0067 26.3 8.0 69 45-113 5-73 (670)
98 PF10506 MCC-bdg_PDZ: PDZ doma 27.7 1.9E+02 0.0041 19.3 7.5 58 4-61 7-65 (67)
99 PF04065 Not3: Not1 N-terminal 27.6 1.7E+02 0.0037 24.3 5.5 100 7-106 127-227 (233)
100 PRK14063 exodeoxyribonuclease 27.4 1.4E+02 0.0029 20.3 4.1 43 54-96 7-50 (76)
101 PRK14066 exodeoxyribonuclease 27.3 1.6E+02 0.0035 20.0 4.5 44 53-96 5-49 (75)
102 KOG2185 Predicted RNA-processi 27.1 2.3E+02 0.0049 25.8 6.4 67 98-168 25-109 (486)
103 PF11172 DUF2959: Protein of u 27.0 3.5E+02 0.0075 22.0 7.6 23 99-121 75-97 (201)
104 COG3078 Uncharacterized protei 26.7 1.2E+02 0.0027 23.6 4.1 14 127-140 150-163 (169)
105 PRK14158 heat shock protein Gr 26.4 3.4E+02 0.0075 21.8 9.4 20 9-28 40-59 (194)
106 PRK14475 F0F1 ATP synthase sub 26.4 3E+02 0.0065 21.1 13.5 9 80-88 134-142 (167)
107 COG2719 SpoVR Uncharacterized 25.9 3.4E+02 0.0074 25.0 7.3 71 74-147 132-204 (495)
108 cd00179 SynN Syntaxin N-termin 25.8 2.6E+02 0.0056 20.5 5.9 13 61-73 8-20 (151)
109 PRK11637 AmiB activator; Provi 25.6 4.7E+02 0.01 23.1 13.7 141 3-145 90-243 (428)
110 PRK14068 exodeoxyribonuclease 25.3 2.1E+02 0.0045 19.5 4.7 43 53-95 7-50 (76)
111 PF04781 DUF627: Protein of un 25.3 63 0.0014 23.8 2.2 42 24-66 2-43 (111)
112 COG5509 Uncharacterized small 24.6 2.2E+02 0.0047 18.8 4.7 37 5-43 28-64 (65)
113 PF06008 Laminin_I: Laminin Do 24.4 4E+02 0.0087 21.9 16.5 87 4-93 47-141 (264)
114 PRK14151 heat shock protein Gr 24.3 3.6E+02 0.0077 21.3 8.7 18 6-23 24-41 (176)
115 PF11471 Sugarporin_N: Maltopo 24.3 1.6E+02 0.0034 19.2 3.8 26 3-28 26-51 (60)
116 PRK14069 exodeoxyribonuclease 24.3 2E+02 0.0044 20.6 4.6 43 54-96 10-53 (95)
117 PRK00977 exodeoxyribonuclease 24.2 2E+02 0.0043 19.7 4.5 42 54-95 12-54 (80)
118 PRK09562 mazG nucleoside triph 24.2 3.2E+02 0.007 22.9 6.6 58 79-143 142-200 (262)
119 PRK02793 phi X174 lysis protei 24.1 2.3E+02 0.0049 18.9 5.0 51 97-147 3-55 (72)
120 COG1256 FlgK Flagellar hook-as 23.9 4.6E+02 0.01 24.5 8.1 74 75-149 141-215 (552)
121 PRK13848 conjugal transfer pro 23.6 2.8E+02 0.0062 19.9 6.2 50 98-147 10-63 (98)
122 TIGR03185 DNA_S_dndD DNA sulfu 23.6 6.2E+02 0.013 23.8 17.2 47 98-144 391-437 (650)
123 TIGR03185 DNA_S_dndD DNA sulfu 23.5 6.2E+02 0.014 23.8 12.1 17 39-55 425-441 (650)
124 TIGR01280 xseB exodeoxyribonuc 23.5 2.3E+02 0.0049 18.7 4.6 43 54-96 3-46 (67)
125 KOG0994 Extracellular matrix g 23.4 8.9E+02 0.019 25.5 15.7 92 35-129 1450-1542(1758)
126 PRK14141 heat shock protein Gr 23.1 4.2E+02 0.009 21.6 8.9 16 7-22 36-51 (209)
127 cd07603 BAR_ACAPs The Bin/Amph 22.8 4E+02 0.0087 21.3 8.8 29 4-32 4-32 (200)
128 PRK00591 prfA peptide chain re 22.7 5.4E+02 0.012 22.8 8.7 14 132-145 79-92 (359)
129 PF10359 Fmp27_WPPW: RNA pol I 22.5 3.1E+02 0.0068 24.9 6.7 66 3-71 164-229 (475)
130 PRK14157 heat shock protein Gr 22.3 3.9E+02 0.0084 22.2 6.6 16 7-22 82-97 (227)
131 PF10158 LOH1CR12: Tumour supp 22.2 3.5E+02 0.0075 20.3 9.9 39 52-96 80-118 (131)
132 PRK06746 peptide chain release 22.1 3.1E+02 0.0068 23.9 6.3 49 98-146 24-72 (326)
133 PF13324 GCIP: Grap2 and cycli 22.0 4.6E+02 0.01 21.7 8.0 46 97-145 224-269 (275)
134 TIGR01061 parC_Gpos DNA topois 21.8 7.4E+02 0.016 24.0 11.8 90 56-147 377-474 (738)
135 PF02090 SPAM: Salmonella surf 21.6 3.9E+02 0.0084 20.7 6.2 45 3-47 88-133 (147)
136 KOG1656 Protein involved in gl 21.5 4.6E+02 0.01 21.5 14.0 159 5-170 24-195 (221)
137 PF03962 Mnd1: Mnd1 family; I 21.4 4.2E+02 0.009 21.0 10.1 24 5-28 72-95 (188)
138 PF10938 YfdX: YfdX protein; 21.4 1.6E+02 0.0035 22.6 4.0 28 16-43 73-100 (155)
139 PF13763 DUF4167: Domain of un 21.3 2.1E+02 0.0046 19.9 4.1 34 15-48 36-69 (80)
140 TIGR02492 flgK_ends flagellar 21.2 4.6E+02 0.01 22.3 7.2 73 76-149 138-212 (322)
141 PF07106 TBPIP: Tat binding pr 21.2 3.8E+02 0.0082 20.4 11.1 53 80-132 94-146 (169)
142 COG4575 ElaB Uncharacterized c 21.2 3.4E+02 0.0073 19.8 5.9 50 93-145 3-54 (104)
143 KOG3192 Mitochondrial J-type c 21.0 4.2E+02 0.0092 20.9 7.2 45 6-50 116-160 (168)
144 PF01519 DUF16: Protein of unk 21.0 3.4E+02 0.0073 19.7 6.2 11 9-19 37-47 (102)
145 PF02403 Seryl_tRNA_N: Seryl-t 20.9 3E+02 0.0066 19.2 6.6 26 7-32 41-66 (108)
146 PF03670 UPF0184: Uncharacteri 20.7 2E+02 0.0044 20.1 3.9 32 2-33 33-64 (83)
147 PF02609 Exonuc_VII_S: Exonucl 20.7 2.2E+02 0.0048 17.6 5.1 39 56-94 3-42 (53)
148 PF07820 TraC: TraC-like prote 20.6 3.3E+02 0.0071 19.4 8.0 51 99-149 10-64 (92)
149 PRK05589 peptide chain release 20.5 4E+02 0.0086 23.3 6.6 49 97-146 23-71 (325)
150 KOG0999 Microtubule-associated 20.4 7.6E+02 0.017 23.6 9.9 64 3-71 9-72 (772)
151 PF07889 DUF1664: Protein of u 20.4 3.8E+02 0.0082 20.1 7.7 7 9-15 68-74 (126)
152 cd00187 TOP4c DNA Topoisomeras 20.3 6.6E+02 0.014 22.8 8.6 88 44-146 333-423 (445)
No 1
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=100.00 E-value=9.6e-35 Score=231.58 Aligned_cols=147 Identities=25% Similarity=0.310 Sum_probs=141.1
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL 81 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al 81 (172)
++|+.|.+|+.+|+.+|+.+...||++++.|++.+|+.|||+||+||++++++.+++++|++++++||+|+++..|+.||
T Consensus 34 ~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aL 113 (191)
T PTZ00446 34 EAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNAL 113 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHhhhh
Q 030731 82 KSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL-SAEDEEEILAEFDNLEAQVFAYI 148 (172)
Q Consensus 82 k~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~-~~~DedELe~EL~~L~~e~~~~~ 148 (172)
+.|+++||.+|+.|++|+|+++||+++|+++.++||+++|++++ +++||+||++||++|+.+..+..
T Consensus 114 k~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~~~ 181 (191)
T PTZ00446 114 SYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEEK 181 (191)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874 57999999999999998776543
No 2
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=100.00 E-value=4.4e-34 Score=224.63 Aligned_cols=155 Identities=52% Similarity=0.685 Sum_probs=148.8
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL 81 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al 81 (172)
+|||+|.+|++++++.++.++..||.++|.|+|.+|+.+||+|+++|..|.++.+++.||++++..||.+...+.|+++|
T Consensus 23 ~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gL 102 (209)
T KOG2910|consen 23 TQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGL 102 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Q 030731 82 KSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYY 158 (172)
Q Consensus 82 k~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~~~~~~~ 158 (172)
+.||.+||++++.+++|+|+++||+.+|.+++++||+++|++.++..|+++|++||++|+++..+. .+.|+.|+.
T Consensus 103 k~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~~~e--~e~PevPs~ 177 (209)
T KOG2910|consen 103 KQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESELEVE--AELPEVPST 177 (209)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhhh--hhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999866 346666654
No 3
>PTZ00464 SNF-7-like protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=222.04 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=140.0
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQK-------RKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKA 76 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g-------~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~ 76 (172)
|+++..+.+++. +|+.+...||++++++ .|.+|+.|||+||+||++++++.++++||+++.++|++++++..
T Consensus 24 ~~r~~~l~kKi~-~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~ 102 (211)
T PTZ00464 24 GGRSEVVDARIN-KIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKV 102 (211)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444442 2566667798888754 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHhhhh-hhhh
Q 030731 77 VFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQVFAYI-QFEL 152 (172)
Q Consensus 77 v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~---~~~DedELe~EL~~L~~e~~~~~-~~~~ 152 (172)
||.||+.|+++||.+|+.|++|+|+++||+|+|.++.++||+++|++++ +++||+||++||++|+.++..+. .+-+
T Consensus 103 vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~~~~~l 182 (211)
T PTZ00464 103 QVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADASYL 182 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 9999999999999999999999999999999999999999999999977 36899999999999999875333 2224
Q ss_pred hcccCCCCCCCCCCccccc
Q 030731 153 AHNFYYSVLPFPHFSLSKQ 171 (172)
Q Consensus 153 ~~~~~~~~~~~p~~~~~~~ 171 (172)
.+.|+....+.|.-|.|++
T Consensus 183 ~~~~~~p~~~~~~~~~~~~ 201 (211)
T PTZ00464 183 ADALAVPGTKLPDVPTDEK 201 (211)
T ss_pred hccccCCCCCCCCCCCccc
Confidence 4445555566777777764
No 4
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-32 Score=215.18 Aligned_cols=147 Identities=30% Similarity=0.408 Sum_probs=136.4
Q ss_pred hHHhHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQA-ARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~-aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g 84 (172)
-|.++++.|+.+|...... |+.|..+ +|..|+.||||||+||++|.++.+.+.+|+.....||+|.+|.+|+.+|..|
T Consensus 32 mL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~ 110 (221)
T KOG1656|consen 32 MLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 4778999999999999777 7877775 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 030731 85 TNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS---AEDEEEILAEFDNLEAQVFAYIQFELA 153 (172)
Q Consensus 85 ~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~---~~DedELe~EL~~L~~e~~~~~~~~~~ 153 (172)
+++||.+++.|+||+|+++||+|.|+.+..+||+++||.+++ ++|+|||.+||++|+.+..+.-...++
T Consensus 111 A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~ 182 (221)
T KOG1656|consen 111 AKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIR 182 (221)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999874 699999999999999988766544443
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.95 E-value=1.2e-28 Score=191.20 Aligned_cols=154 Identities=31% Similarity=0.387 Sum_probs=126.3
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK 82 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk 82 (172)
+++.|.+++.+|+.+|+.+..+||+++++|++..|+.|||+++.++++++++.+++.+|+.++.+|+++..+..|+.+|+
T Consensus 9 ~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~ 88 (171)
T PF03357_consen 9 TIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALK 88 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHhhhh--hhhhhccc
Q 030731 83 SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQVFAYI--QFELAHNF 156 (172)
Q Consensus 83 ~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~---~~~DedELe~EL~~L~~e~~~~~--~~~~~~~~ 156 (172)
.|+.+|+.+++.+++++|+++|++|++.++.+++|+++|++++ +++||+||++||++|+.+..... ...+|..|
T Consensus 89 ~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~~~~~~lp~~P 167 (171)
T PF03357_consen 89 QSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEEEEKQQLPSVP 167 (171)
T ss_dssp --SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS--SS-SS---
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhhhccccCCcCC
Confidence 9999999999999999999999999999999999999999987 46899999999999999998665 33344444
No 6
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=201.27 Aligned_cols=158 Identities=25% Similarity=0.295 Sum_probs=143.3
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKS 83 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~ 83 (172)
+..|.++++.|+++|+++..+++++++.|.|+.|+.+||+||++|+.+++....+.+|++++++|.+|++|+.|+.||+.
T Consensus 242 ~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~Ayks 321 (439)
T KOG2911|consen 242 RAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKS 321 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-C--CCCHHHHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 030731 84 GTNAIKAIQSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKL-S--AEDEEEILAEFDNLEAQVFAYIQFELAHNFYYS 159 (172)
Q Consensus 84 g~~~Lk~~~~~-~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~-~--~~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~ 159 (172)
|+.|||.+++. .+.|+||+++|++.|.++.++||+++|+++. + +.+|++||+||+.|+.+..+.-...+|.++...
T Consensus 322 Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~e~~~lp~~~~sr 401 (439)
T KOG2911|consen 322 GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKNEDLVLPLNSVSR 401 (439)
T ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccCCccCCCCCCchH
Confidence 99999999995 4599999999999999999999999999875 3 689999999999999998864333355555544
Q ss_pred CC
Q 030731 160 VL 161 (172)
Q Consensus 160 ~~ 161 (172)
.+
T Consensus 402 ~~ 403 (439)
T KOG2911|consen 402 DF 403 (439)
T ss_pred HH
Confidence 33
No 7
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.3e-22 Score=158.24 Aligned_cols=139 Identities=27% Similarity=0.331 Sum_probs=120.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKR-----KDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFES 80 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~-----k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a 80 (172)
.+..+|.+|+..+-..+..++.- |.|. |++|++.||.||+||.+.+.+.++.+|+++.-+++++.+.+..+|.|
T Consensus 30 Sve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~A 108 (218)
T KOG1655|consen 30 SVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAA 108 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544444444444433 4454 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHh
Q 030731 81 LKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 81 lk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~ 145 (172)
|+.|++.||...+.|+||+|+++.|+|.+.++..+||+++|+.+++ ++|+++|+.||++|..|..
T Consensus 109 mK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 109 MKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELD 175 (218)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhh
Confidence 9999999999999999999999999999999999999999999886 6999999999999976653
No 8
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.4e-14 Score=114.98 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=133.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTN 86 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~ 86 (172)
|.+....|+.+-.+...++|+..++|+...++..-|.--++.+++.++.++..+|+.+..+|+..+++..+..+|+.+++
T Consensus 28 leRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTk 107 (224)
T KOG3230|consen 28 LERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATK 107 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55566677777778889999999999976655555555555566788899999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCC
Q 030731 87 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVL 161 (172)
Q Consensus 87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~~~ 161 (172)
+|..+|++|++..+.+||.+|+.+.+.++...++++..+++ .+++|=|+|-++|.+.+.++|+.++.+..++.|-
T Consensus 108 am~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~ 183 (224)
T KOG3230|consen 108 AMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPS 183 (224)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence 99999999999999999999999999999999999999874 6677778999999999999998888766555444
No 9
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8e-09 Score=80.66 Aligned_cols=158 Identities=11% Similarity=0.115 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 030731 13 QLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQ 92 (172)
Q Consensus 13 ~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~ 92 (172)
.++.+-.++.-++|+....|+.+.|+.+-|.--.+.++-.+..+....+..+..+-....++..+..||....++|+.+|
T Consensus 33 ~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amN 112 (208)
T KOG3231|consen 33 AMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMN 112 (208)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 44444455566788999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhhhhhhcccCCCC--CCCCCCccc
Q 030731 93 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQFELAHNFYYSV--LPFPHFSLS 169 (172)
Q Consensus 93 ~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~~--~~~p~~~~~ 169 (172)
+.|+++++-..|-+++-...+++-..++|+..+++ .|...=++|-+++.+.+.++|+-++...++..| .+.|-+|.+
T Consensus 113 k~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~a~s~~~~st~ 192 (208)
T KOG3231|consen 113 KKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPSARSLPSASTS 192 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCccCCCCccccC
Confidence 99999999999999999999998888888877652 111111356778888888888777666665554 356666665
Q ss_pred c
Q 030731 170 K 170 (172)
Q Consensus 170 ~ 170 (172)
|
T Consensus 193 k 193 (208)
T KOG3231|consen 193 K 193 (208)
T ss_pred C
Confidence 5
No 10
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=5.3e-07 Score=72.59 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=113.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTN 86 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~ 86 (172)
|..++..|+..-......+|+++++|++.-++.+-|.--...+...+++..-.+|..+.+++..+-....+...|+.++.
T Consensus 30 ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkSte 109 (227)
T KOG3229|consen 30 LDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTE 109 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHH
Confidence 44455555555566667789999999988777777776667777889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CC----CHHHHHHHHHHHHHHHhhh
Q 030731 87 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AE----DEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~----DedELe~EL~~L~~e~~~~ 147 (172)
+|+.+|+=+-+..+-.+|-++.-.+-+.--|.+++...+. .. .+++.++|.+.+.-++...
T Consensus 110 vMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~ 175 (227)
T KOG3229|consen 110 VMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGE 175 (227)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999987764 23 3444555555555555433
No 11
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00014 Score=57.37 Aligned_cols=138 Identities=21% Similarity=0.219 Sum_probs=103.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRAL----LALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK 82 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~----~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk 82 (172)
|.+.-.+.++.-..+..++|+.+.+|+.+.|. +.+|+|-..- ++...-..+..+..++++|-+...|-..|.
T Consensus 21 L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~----n~LrlssRvDAVaaRvqTavtmr~Vt~sM~ 96 (203)
T KOG3232|consen 21 LQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAV----NYLRLSSRVDAVAARVQTAVTMRKVTKSMA 96 (203)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556678899999999987655 5566655433 444566789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHHhhhhhhhh
Q 030731 83 SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQVFAYIQFEL 152 (172)
Q Consensus 83 ~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-----~~DedELe~EL~~L~~e~~~~~~~~~ 152 (172)
...+.|-...+.||+++|-.+||.++-+-++.+--...+...++ ..+.++ .+.|..++.++.+-++
T Consensus 97 gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~----Vd~Lmq~vADeaGlEl 167 (203)
T KOG3232|consen 97 GVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGD----VDSLMQQVADEAGLEL 167 (203)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhH----HHHHHHHHHHHhchhh
Confidence 99999999999999999999999999999987766665544332 234443 5667777777765553
No 12
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=98.11 E-value=0.00032 Score=56.88 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=102.6
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLIN-----------VEQQLADIEL 70 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~-----------Le~~~~~Ie~ 70 (172)
+.+..|.++...++..+......|..++..|+-+.|+.+|.+|..++..+..+..++.. |..+-.+|..
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999998877777666554 4445556667
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 030731 71 ASKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQ 143 (172)
Q Consensus 71 a~~n~~v~~alk~g~~~Lk~~~~~---~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e 143 (172)
.+.....+.+=..+..+...++.. ++++.....++.|.+.++..+--.++.....+ +...++.+|+++...
T Consensus 131 ~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~--~~~~~e~~l~~~~~~ 204 (221)
T PF04012_consen 131 LKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD--SDQDLEAELEELERD 204 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccHHHHHHHhcCC
Confidence 778888888888888888888764 34556666666666666655555555543321 222377777777643
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=97.92 E-value=0.0026 Score=52.15 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=99.5
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLIN-----------VEQQLADIELA 71 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~-----------Le~~~~~Ie~a 71 (172)
..-.+.++...+...++....+|...+.+|+-+.|+..|.+|+.+...+..+..++.. +..+-.+|+.+
T Consensus 53 ~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 53 EKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999999999999999988776666555544 44555677788
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHhccC----CC----C-CCHHHHHHHHHH
Q 030731 72 SKQKAVFESLKSGTNAIKAIQSEIN---LEDVQKLMDDTEEAKAYQDEINAILGEK----LS----A-EDEEEILAEFDN 139 (172)
Q Consensus 72 ~~n~~v~~alk~g~~~Lk~~~~~~~---id~Ve~~~de~~e~~e~~~EI~e~L~~~----~~----~-~DedELe~EL~~ 139 (172)
+.-..++.+=..+..+.++++..++ .+..-.-++.|++-++..+--.+++..+ ++ . ..+++++.||+.
T Consensus 133 k~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~ 212 (222)
T PRK10698 133 RARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAA 212 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHH
Confidence 8999999998889999888887654 3333334444555555554444554321 11 0 112346666666
Q ss_pred HHHHH
Q 030731 140 LEAQV 144 (172)
Q Consensus 140 L~~e~ 144 (172)
|-..+
T Consensus 213 LK~~~ 217 (222)
T PRK10698 213 LKAKM 217 (222)
T ss_pred HHHHh
Confidence 66554
No 14
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.67 E-value=0.0022 Score=52.28 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=87.9
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQ-----------QLADIELA 71 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~-----------~~~~Ie~a 71 (172)
..-.+.++...+...+......|+..+..|+-+.|+.+|.+|+.++..+..+..++..+.. +-..|+.+
T Consensus 53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 53 DKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999888777666555443 44445555
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 030731 72 SKQKAVFESLKSGTNAIKAIQSE---INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLE 141 (172)
Q Consensus 72 ~~n~~v~~alk~g~~~Lk~~~~~---~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~ 141 (172)
+.....+.+=..+..+.+.++.. ++.+..-..++.|.+-++..+--.++... . +.+.|+.+|+.|+
T Consensus 133 k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~-~---~~~~l~~~l~~l~ 201 (219)
T TIGR02977 133 RARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL-G---RKPSLEDEFAELE 201 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-c---CCCCHHHHHHHhc
Confidence 66666555555566666566554 34444444444455544444433344331 1 1233555555554
No 15
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=97.16 E-value=0.045 Score=44.50 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHH-------HH
Q 030731 49 ELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN-LEDVQKLMDDTEEAKAYQDEIN-------AI 120 (172)
Q Consensus 49 k~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~-id~Ve~~~de~~e~~e~~~EI~-------e~ 120 (172)
+.+=++..+...|...+.++++.......--++...+.-+......++ +..+.++++.+.-+....+-+. +.
T Consensus 42 ~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~ 121 (204)
T COG5491 42 EELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDEL 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466777777777777777776666665666666666666666676 7777777777666655554444 33
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHhhhhhhhhhc
Q 030731 121 LGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAH 154 (172)
Q Consensus 121 L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~~~ 154 (172)
+.-+.+ .+..+..++++++.+.+.|+++.++.+
T Consensus 122 ~~v~~~-~~v~~~l~~lde~v~~v~pEi~lel~~ 154 (204)
T COG5491 122 MDVVVG-DPVLEDLEELDELVNKVLPEIGLELDE 154 (204)
T ss_pred hccCcc-chhhhhHHHHHHHHHhhchhhhhhhhh
Confidence 333332 355666777777777777777666653
No 16
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.03 Score=45.19 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=101.6
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDL---IRQKRKDRALLALKKKKAQ-EELLKQVDGWLINVEQQLADIELASKQKAVFE 79 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~---~k~g~k~~A~~~Lk~KK~~-ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~ 79 (172)
++.+.++...++.+|.++..+..+| +++-+-.-|+..||.|.+- =++---+.++..+|....+..++|....+-++
T Consensus 21 i~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LK 100 (218)
T KOG1655|consen 21 IDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLK 100 (218)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4678899999999998887776655 5555557799999998873 45566788999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHh
Q 030731 80 SLKSGTNAIKAIQSEIN----LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 80 alk~g~~~Lk~~~~~~~----id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~DedELe~EL~~L~~e~~ 145 (172)
-=.....+||.-+++|- -=+|++| +++++.+++.=+..+=|...++ ..+.-|+++ ++|.+|+.
T Consensus 101 dtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem~Dlmd~a~EiQE~Lgr~y~~peide--~dL~aELd 168 (218)
T KOG1655|consen 101 DTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEMEDLMDQADEIQEVLGRNYNTPDIDE--ADLDAELD 168 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcCH--HHHHHHHH
Confidence 88888889998888764 3344443 5566665555555555555665 577776442 34555554
No 17
>PTZ00464 SNF-7-like protein; Provisional
Probab=96.85 E-value=0.08 Score=43.24 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Q 030731 53 QVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 53 k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~ 96 (172)
.+.+++.++...+++++...+..+....=.....+|+.-++.+.
T Consensus 72 ~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK 115 (211)
T PTZ00464 72 MYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLK 115 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777776666666666666665543
No 18
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.81 E-value=0.22 Score=41.06 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=94.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVE-----------QQLADIELASKQ 74 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le-----------~~~~~Ie~a~~n 74 (172)
.+..+...+..+++.....|+..+..|+-..|...|-++..|++.+..+...+..+. .+-.+|......
T Consensus 56 ~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 56 QLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999999999999999999987776666555443 344556666778
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 030731 75 KAVFESLKSGTNAIKAIQSEI---NLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEA 142 (172)
Q Consensus 75 ~~v~~alk~g~~~Lk~~~~~~---~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~ 142 (172)
+.++.+=....++-..+++.+ +.+..-..++.|++-++....-.++.+.-. ....++++.|++.+..
T Consensus 136 ~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~-~~~~~dl~~e~a~~~~ 205 (225)
T COG1842 136 KEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA-EGSGDDLDKEFAQAGA 205 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-ccCcccHHHHHHHhcc
Confidence 888888888888888877654 344445555555555555555555554310 2233556677777665
No 19
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=96.67 E-value=0.0036 Score=48.10 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=86.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKK-----AQEELLKQVDGWLINVEQQLADIELASKQKAVFES 80 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK-----~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a 80 (172)
.|+..+..|+.++..+..+++.+- ..|+.+++... .+=+..-.+..++.++.....+++......+....
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~-----~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~ 79 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLE-----KKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQS 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCH-----HHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999888764 56777776533 24455667788888888999999999888888888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH--HHHHHHHHHHHHHH---HhccCCCC-CC--HHHHHHHHHHHHHHHhhhhhhhh
Q 030731 81 LKSGTNAIKAIQSEINLEDVQKLMD--DTEEAKAYQDEINA---ILGEKLSA-ED--EEEILAEFDNLEAQVFAYIQFEL 152 (172)
Q Consensus 81 lk~g~~~Lk~~~~~~~id~Ve~~~d--e~~e~~e~~~EI~e---~L~~~~~~-~D--edELe~EL~~L~~e~~~~~~~~~ 152 (172)
......+|+..++.+. ++.+-++ ++.+.++...+..+ .++..+++ .+ ++.-++|+++...++..+...+.
T Consensus 80 ~~~v~~al~~~~~~Lk--~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~ 157 (171)
T PF03357_consen 80 NQQVVKALKQSSKALK--KINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE 157 (171)
T ss_dssp HHHHSSS----SHHHH--HHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 8888888877665543 3333332 34444333333332 33445554 43 46667778877777776654333
Q ss_pred hcccCCCCCCCCCCccc
Q 030731 153 AHNFYYSVLPFPHFSLS 169 (172)
Q Consensus 153 ~~~~~~~~~~~p~~~~~ 169 (172)
. ....+|.+|++
T Consensus 158 ~-----~~~~lp~~P~~ 169 (171)
T PF03357_consen 158 E-----EKQQLPSVPST 169 (171)
T ss_dssp -------SS-SS---HH
T ss_pred h-----ccccCCcCCCC
Confidence 2 23455666543
No 20
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=1.2 Score=36.09 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=101.0
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELL---KQVDGWLINVEQQLADIELASKQKAVFES 80 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l---~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a 80 (172)
|..|..+.++|-..|.+. ||+---..-|..|+.+.|.|.+..+.. .++.+....++++...-.-++.-+-+-.+
T Consensus 32 r~~le~qeKklvaeIKk~---AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTka 108 (224)
T KOG3230|consen 32 RQKLELQEKKLVAEIKKT---AKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKA 108 (224)
T ss_pred HHHHHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446677777777777655 555444445789999999988876543 45666778888999998899999999999
Q ss_pred HHHHHHHHHHH--hcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhhhhhhhhcccC
Q 030731 81 LKSGTNAIKAI--QSE-INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFELAHNFY 157 (172)
Q Consensus 81 lk~g~~~Lk~~--~~~-~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~~~~~~ 157 (172)
|..-|..|.-- .+- +..++=.++||--+|.+. +-|+++|+ ++.||+|-++=-+....|+.-++.+.+...|+
T Consensus 109 m~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~---~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~ 183 (224)
T KOG3230|consen 109 MAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALG---DDEDEEETDDLVNQVLDEIGVDLASQLSSLPS 183 (224)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc---ccchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence 99888765432 222 246666777776666643 34566665 25677777777777778887666655555555
No 21
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=94.35 E-value=1.4 Score=35.88 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=90.8
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLK 82 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk 82 (172)
|+.++..-.+...+......++.+.+..++. ..|..++|-+ ++..++......|+..-..+........|...+.
T Consensus 8 ~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~-~l~~~~~~~~----~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~ 82 (204)
T COG5491 8 QAKKLVRELKQEAKKGQVLLNEIAKKAPNRR-RLAEELYKLR----KARSRLDASISRLQSLDTMLFEKVVMRQVSGDMA 82 (204)
T ss_pred HHHHhhhhhhhHhHHHHHHHHHhccchhHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3444555555555556655555555443332 2344444433 4456677777788888888888888888888888
Q ss_pred HHHHHHHHHhcC--C-C-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhh
Q 030731 83 SGTNAIKAIQSE--I-N-LEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 83 ~g~~~Lk~~~~~--~-~-id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~ 147 (172)
.++..++.+..= + . ++.+...|+-.+.-++.+.+..+...+.-...+.++++++++.+.-|+.-+
T Consensus 83 ~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~le 151 (204)
T COG5491 83 KAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLE 151 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhh
Confidence 888888755432 2 2 666667777777666788777776665333557788999999888777533
No 22
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=91.83 E-value=3.3 Score=36.98 Aligned_cols=51 Identities=4% Similarity=-0.001 Sum_probs=31.9
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLK 52 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~ 52 (172)
|||++|.--.+.--+++.+.+..+|..+..++-.--+.+|--|++.|.-.+
T Consensus 28 s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me 78 (548)
T COG5665 28 SHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGME 78 (548)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHH
Confidence 567777665555556667778888888877664444445555555554333
No 23
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=90.71 E-value=2.4 Score=28.53 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQV 54 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~ 54 (172)
+.|..-...++.++..+...+..++..++...|+..+++-+++.+.++.+
T Consensus 27 ~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i 76 (78)
T PF07743_consen 27 AELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888999999999999999999999999999999999998877654
No 24
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.96 E-value=17 Score=32.82 Aligned_cols=152 Identities=22% Similarity=0.168 Sum_probs=85.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKK--KKA---QEELLKQVDGWLINVEQQLADIELASKQKAVFES 80 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~--KK~---~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a 80 (172)
.|.+-+..|.++|+.+.++|+++= ..|+.++|. |++ |=+..-.....+......+.++++..++..--..
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~-----~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~ 311 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSK-----EKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQT 311 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 577888899999999999998764 455555554 222 2233334445566666667777776666555444
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH---HHHHHHHHHHHHHHHhccC------CCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 030731 81 LKSGTNAIKAIQSEINLEDVQKLMD---DTEEAKAYQDEINAILGEK------LSAEDEEEILAEFDNLEAQVFAYIQFE 151 (172)
Q Consensus 81 lk~g~~~Lk~~~~~~~id~Ve~~~d---e~~e~~e~~~EI~e~L~~~------~~~~DedELe~EL~~L~~e~~~~~~~~ 151 (172)
=+....|++. +.+-+..++. .....-+..++|.+.+.+. +....-..++.|=++|+.|..+-.
T Consensus 312 nkvvl~Ayks-----Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~--- 383 (439)
T KOG2911|consen 312 NKVVLQAYKS-----GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLE--- 383 (439)
T ss_pred cHHHHHHHHH-----hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHH---
Confidence 4444444442 2333344443 1112233356666666543 223333334445556777766443
Q ss_pred hhcccCCCCCCCCCCccccc
Q 030731 152 LAHNFYYSVLPFPHFSLSKQ 171 (172)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~ 171 (172)
.+.-.+.++-.|..|+|.-
T Consensus 384 -~D~~k~e~~~lp~~~~sr~ 402 (439)
T KOG2911|consen 384 -ADEKKNEDLVLPLNSVSRD 402 (439)
T ss_pred -hccccCCccCCCCCCchHH
Confidence 3444556777888887753
No 25
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=87.66 E-value=3.9 Score=26.80 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 030731 12 FQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQV 54 (172)
Q Consensus 12 ~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~ 54 (172)
+.|+.|.+....-|.++-++|+-..|+.++|.-|.++..|...
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence 3577888888888899999999999999999999999888654
No 26
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=85.87 E-value=17 Score=29.32 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=78.7
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKA-----QEELLKQVDGWLINVEQQLADIELASKQKAVF 78 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~-----~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~ 78 (172)
+..|+..+..|+++......++.+.. ..|+.+++..+. +=+.--.+..++.++...+++++......+..
T Consensus 29 Il~Lk~~~~~L~krq~~Le~kIe~e~-----~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a 103 (191)
T PTZ00446 29 ILKNREAIDALEKKQVQVEKKIKQLE-----IEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENM 103 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888877776544 356766665442 22333456788888999999999988888888
Q ss_pred HHHHHHHHHHHHHhcCCC-H-HH--HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030731 79 ESLKSGTNAIKAIQSEIN-L-ED--VQKLMDDTEEAKAYQDEINAILGEKLSA 127 (172)
Q Consensus 79 ~alk~g~~~Lk~~~~~~~-i-d~--Ve~~~de~~e~~e~~~EI~e~L~~~~~~ 127 (172)
..=.....+|+.-++.+. + .. |++ +|++.+.+..+-+.++=|+..++.
T Consensus 104 ~~~~ev~~aLk~g~~aLK~~~k~~~idk-Vd~lmDei~E~~e~~~EIseaLs~ 155 (191)
T PTZ00446 104 HLHKIAVNALSYAANTHKKLNNEINTQK-VEKIIDTIQENKDIQEEINQALSF 155 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 877777777877776554 1 11 222 345555555555666667777764
No 27
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.64 E-value=32 Score=31.42 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=57.1
Q ss_pred CccchHHhHHHHHHH-HHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 030731 2 SYGLPVMIYSFQLDA-VIEAEKQAARDLIRQKR--KDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVF 78 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~-~ie~~~~~aK~~~k~g~--k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~ 78 (172)
|||..-.++...+++ +++..+......+.+.+ +..-......|+..|+.+.++...+..+..-+..+. ..|+.+.
T Consensus 332 Sqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~--E~n~~l~ 409 (493)
T KOG0804|consen 332 SQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER--EENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 566666666666666 66665555555555432 234445667788888888888888888877777666 5566666
Q ss_pred HHHHHHHHHHHHHh
Q 030731 79 ESLKSGTNAIKAIQ 92 (172)
Q Consensus 79 ~alk~g~~~Lk~~~ 92 (172)
+-...-..-++.+.
T Consensus 410 knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 410 KNQDVWRGKLKELE 423 (493)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555544
No 28
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=78.72 E-value=17 Score=28.09 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=44.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWL 58 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l 58 (172)
.|..-...+..++..+.....+++..++...|..++++-+++.+....+....
T Consensus 101 ~L~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~~~i~~~~ 153 (157)
T TIGR00714 101 RLESFIKRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLRSSAEQLE 153 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888999999999999999999999999999988777665543
No 29
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=76.31 E-value=25 Score=27.67 Aligned_cols=56 Identities=7% Similarity=0.063 Sum_probs=45.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINV 61 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~L 61 (172)
.|..-...+..++..+.....+++..++...|+..+++-+++.+..+.+......|
T Consensus 115 ~L~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~~~~~~l 170 (173)
T PRK01773 115 ALTAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIERVEEKL 170 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677778888888888899989999999999999999998887776655544
No 30
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.71 E-value=23 Score=29.43 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q 030731 92 QSEINLEDVQKLMDDTEEAKAY 113 (172)
Q Consensus 92 ~~~~~id~Ve~~~de~~e~~e~ 113 (172)
|..++++.|++|-+++.--++.
T Consensus 191 N~~l~~e~V~~ikedieyYve~ 212 (233)
T PF04065_consen 191 NDELDPEQVEDIKEDIEYYVES 212 (233)
T ss_pred cCCCCHHHHHHHHHHHHHHHHc
Confidence 3568888888888888777665
No 31
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=75.66 E-value=71 Score=29.95 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=64.0
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDG------------------------- 56 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~------------------------- 56 (172)
+||++|.---++=-+++.+.+..+|.-+....-.--..+|--||+.|+..+++-.
T Consensus 38 sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkE 117 (575)
T KOG2150|consen 38 SQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKE 117 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHH
Confidence 5666655444444455567777888777765421115566666676655544321
Q ss_pred --HHHHHHHHHHHHHHHHhHHHHHHH--HHH-----------HHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Q 030731 57 --WLINVEQQLADIELASKQKAVFES--LKS-----------GTNAIKAI-QSEINLEDVQKLMDDTEEAKAYQDE 116 (172)
Q Consensus 57 --~l~~Le~~~~~Ie~a~~n~~v~~a--lk~-----------g~~~Lk~~-~~~~~id~Ve~~~de~~e~~e~~~E 116 (172)
...+++=+-..|+....+.+-++| |+. ---+|+.+ |.+++.+.|+++-|++..-.+..+.
T Consensus 118 kek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd 193 (575)
T KOG2150|consen 118 KEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD 193 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC
Confidence 122333344444444444444444 111 11134444 5678999999999999887776554
No 32
>PRK14162 heat shock protein GrpE; Provisional
Probab=75.41 E-value=31 Score=27.84 Aligned_cols=21 Identities=10% Similarity=-0.182 Sum_probs=10.4
Q ss_pred chHHhHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAA 25 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~a 25 (172)
..|...+..++.+++......
T Consensus 42 ~~l~~~l~~l~~e~~elkd~~ 62 (194)
T PRK14162 42 EDLEKEIADLKAKNKDLEDKY 62 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444333
No 33
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=73.39 E-value=32 Score=27.13 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=44.3
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQ-KRKDRALLALKKKKAQEELLKQVDGWLIN 60 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~-g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~ 60 (172)
+.|..-...+..++..+...+.+++.. ++...|...+++-+++.+....+......
T Consensus 117 ~~L~~l~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y~~kl~~ei~~~~~~ 173 (176)
T PRK03578 117 DALDALLAELRDERRERYAELGALLDSRGDDQAAAEAVRQLMFIEKLAQEIGAAIER 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666778888888888888988877 78899999999999988877766554443
No 34
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=73.12 E-value=34 Score=26.76 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINV 61 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~L 61 (172)
|..-...+..++..+.....+++..++...|..++++-+++.+....+......|
T Consensus 115 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ei~~~~~~l 169 (171)
T PRK05014 115 LESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRSEVEQLEEKL 169 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666777777888888888888999999999999999988877766554443
No 35
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=73.12 E-value=23 Score=24.30 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030731 47 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 124 (172)
Q Consensus 47 ~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~ 124 (172)
+++.|+.+...-..++.+...|+.+..+.. .++.. ++....+++..-.-+...+.+.++|..+
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~-------------~v~~~--~~~t~~LLd~w~~IlSQte~~~~Ll~dp 65 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMN-------------RVQET--VESTNTLLDKWIRILSQTEHTQRLLLDP 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555555555555555555555554433 33322 3455677777777778888888988765
No 36
>PRK11020 hypothetical protein; Provisional
Probab=72.14 E-value=38 Score=25.17 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=45.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWL 58 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l 58 (172)
.+++.++.|..+++.|+.+--.....|+......+.+.+--+++.+.+.-+..
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999988888888888888777665543
No 37
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=71.33 E-value=25 Score=23.88 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHHh
Q 030731 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLSAE-DEEEILAEFDNLEAQVF 145 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~-DedELe~EL~~L~~e~~ 145 (172)
++.|+.+-.+|.......++|...-...+... ++.++..|++.|..++.
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~ 55 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIK 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Confidence 34566666666666666667766655544332 34589999999988874
No 38
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=70.57 E-value=91 Score=28.93 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=52.5
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRK------DRALLALKKKKAQEELLK-------------QVDGWLINVEQQ 64 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k------~~A~~~Lk~KK~~ek~l~-------------k~~~~l~~Le~~ 64 (172)
++.|...+.+|..++++...+++.++....- ..|..+.-+-+.+...+. ++......+..+
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L 88 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQEL 88 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 5788999999999999999999999887543 344444444444443331 122223334444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 030731 65 LADIELASKQKAVFESLKSGTNAIKAIQS 93 (172)
Q Consensus 65 ~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~ 93 (172)
...++....-..+++.+..-...|+.++.
T Consensus 89 ~~eL~~~~~~l~~L~~L~~i~~~l~~~~~ 117 (593)
T PF06248_consen 89 KRELEENEQLLEVLEQLQEIDELLEEVEE 117 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555554443
No 39
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.52 E-value=57 Score=26.30 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=46.4
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL 81 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al 81 (172)
.+.+.++.-+..|+.++++....++.++..|+- +...- ....+.+..+.. .+..+..|.++|
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~-----~~~a~-------~~F~~~l~d~~~------~~~gd~~i~~~L 63 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKA-----YATTN-------KLFVSGIRDLSQ------QCKKDEMISECL 63 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-------HHHHHHHHHHHH------HcCCchHHHHHH
Confidence 345678888999999999999999999987652 11111 112222222211 234555666777
Q ss_pred HHHHHHHHHHhc
Q 030731 82 KSGTNAIKAIQS 93 (172)
Q Consensus 82 k~g~~~Lk~~~~ 93 (172)
+.-+.+|+.+..
T Consensus 64 ~kF~~~l~ei~~ 75 (200)
T cd07637 64 DKFGDSLQEMVN 75 (200)
T ss_pred HHHHHHHHHHHH
Confidence 777777777755
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.75 E-value=1.1e+02 Score=28.40 Aligned_cols=138 Identities=19% Similarity=0.279 Sum_probs=69.8
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDR-ALLALK------------KKKAQEELLKQVDGWLINVEQQLADIELA 71 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~-A~~~Lk------------~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a 71 (172)
+.+...+..++.+|.........++....+++ +-..|| .+..|-..+..+...+.+++......+..
T Consensus 108 ~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l 187 (569)
T PRK04778 108 NEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVEL 187 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777666544322 112222 12222234445555555555555555555
Q ss_pred HhH------HHHHHHHHHHHHHHHHHhcCCC--HHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 030731 72 SKQ------KAVFESLKSGTNAIKAIQSEIN--LEDVQKLM-DDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEA 142 (172)
Q Consensus 72 ~~n------~~v~~alk~g~~~Lk~~~~~~~--id~Ve~~~-de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~ 142 (172)
..+ ..++..++.....|..+...++ +..+...+ +.+.|. ..-..++...++ ..+..+++.++..|..
T Consensus 188 ~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el---~~gy~~m~~~gy-~~~~~~i~~~i~~l~~ 263 (569)
T PRK04778 188 TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL---KAGYRELVEEGY-HLDHLDIEKEIQDLKE 263 (569)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHcCC-CCCCCChHHHHHHHHH
Confidence 433 3444455555555555544443 33333322 222222 233344555555 3455567777777766
Q ss_pred HHhh
Q 030731 143 QVFA 146 (172)
Q Consensus 143 e~~~ 146 (172)
.+..
T Consensus 264 ~i~~ 267 (569)
T PRK04778 264 QIDE 267 (569)
T ss_pred HHHH
Confidence 6653
No 41
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=64.99 E-value=53 Score=25.61 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=41.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDG 56 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~ 56 (172)
.|..-...++.++..+.....+++..++...|+.++++-+++.+..+.+..
T Consensus 110 ~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~~i~~ 160 (166)
T PRK01356 110 DLEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLNKLQE 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777888888888899999899999999999999999887765543
No 42
>PRK14146 heat shock protein GrpE; Provisional
Probab=64.21 E-value=76 Score=25.96 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHH
Q 030731 48 EELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLE 98 (172)
Q Consensus 48 ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id 98 (172)
++.+..+...+.+|+..+...........++.++....+.|.++.+..++.
T Consensus 104 e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~ 154 (215)
T PRK14146 104 KSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILKEFYSVLEKSNVI 154 (215)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHCcCe
Confidence 344444444444444433222111122334444444444444444444433
No 43
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=63.86 E-value=50 Score=23.43 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030731 47 QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS 126 (172)
Q Consensus 47 ~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~ 126 (172)
+.+.+..+...+..|+..+...+.+. .-+..+..+..+.+.+...+=.-.++++...+.+..+..+.--.-+..
T Consensus 11 l~~~~~~l~~~~~~l~~~~~E~~~v~---~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~--- 84 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQLNENKKAL---EELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER--- 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44445555555555544444443333 233333356666666655443445566666666665555444444443
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 030731 127 AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 127 ~~DedELe~EL~~L~~e~~ 145 (172)
.-+++..++.++..++.
T Consensus 85 --~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 85 --QEEDLQEKLKELQEKIQ 101 (105)
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 33566677777766554
No 44
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.43 E-value=1e+02 Score=26.10 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCCCCcc
Q 030731 131 EEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPHFSL 168 (172)
Q Consensus 131 dELe~EL~~L~~e~~~~~~~~~~~~~~~~~~~~p~~~~ 168 (172)
..|..|...|..+..+...+..|++....|+|-|+--+
T Consensus 210 ~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCTPDmdV 247 (258)
T PF15397_consen 210 PQLRAEVEQLQAQAQDPREVIFADVLLRRPKCTPDMDV 247 (258)
T ss_pred HHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCCCCchh
Confidence 45666667777666766677789999999999998543
No 45
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=61.36 E-value=74 Score=24.59 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030731 96 NLEDVQKLMDDTEEAKAYQDEINAILG 122 (172)
Q Consensus 96 ~id~Ve~~~de~~e~~e~~~EI~e~L~ 122 (172)
.++.+|++.|.+.|..++.+..-+.+.
T Consensus 87 kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 87 KVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999888776666665
No 46
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.34 E-value=86 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=18.5
Q ss_pred cchHHhHHHHHHHHHH---------HHHHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIE---------AEKQAARDLI 29 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie---------~~~~~aK~~~ 29 (172)
|-.+.++.+.|+..|. .|+-.||+++
T Consensus 31 Rr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV 65 (208)
T KOG3231|consen 31 RRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLV 65 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 4568889999999884 4555565554
No 47
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=59.88 E-value=71 Score=24.12 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=40.3
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie 69 (172)
..|...+..++..++++...+|+.+....+..+-..=.-+..+++...++.....+|...+..++
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888999999999999999998866543322222334445444555554444444444433
No 48
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=59.04 E-value=58 Score=22.58 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHH
Q 030731 39 LALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFE-SLKSGTNAIKAIQSEINLED 99 (172)
Q Consensus 39 ~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~-alk~g~~~Lk~~~~~~~id~ 99 (172)
.+.|.++++...+++-...+..|.+--..+........-+. .+..|.+.++.+.+.--.|+
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~ 70 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDR 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566888899999999989999888888888876655554 78888899988876544333
No 49
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=57.63 E-value=58 Score=24.70 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCH
Q 030731 75 KAVFESLKSGTNAIKAIQSEINL 97 (172)
Q Consensus 75 ~~v~~alk~g~~~Lk~~~~~~~i 97 (172)
..+..++....+-|..+....++
T Consensus 88 ~~~~~g~~~~~~~l~~~L~~~Gv 110 (165)
T PF01025_consen 88 ESLLEGLEMILKQLEDILEKNGV 110 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 34455555555555555544443
No 50
>PRK14140 heat shock protein GrpE; Provisional
Probab=54.57 E-value=1.1e+02 Score=24.54 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=8.8
Q ss_pred hHHhHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQ 23 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~ 23 (172)
.|...+..++.+++....
T Consensus 41 ~l~~~i~~l~~ei~elkd 58 (191)
T PRK14140 41 EEQAKIAELEAKLDELEE 58 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 51
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=54.39 E-value=96 Score=23.71 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 030731 21 EKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQS 93 (172)
Q Consensus 21 ~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~ 93 (172)
...++++++.+-.+-.=.+++|+ -.|.+.+.++...+...-.+-..++...+.+.+..-+..-+.-|+.+..
T Consensus 74 ~L~~g~~LV~k~sk~~r~n~~kk-~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~~ 145 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVRRWNLYKK-PRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDITR 145 (147)
T ss_pred HHHHHHHHHHHhccccHHHHHhh-HhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555444444445544 4467778888888888888888888888888888877777777766654
No 52
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.88 E-value=1e+02 Score=23.08 Aligned_cols=70 Identities=9% Similarity=0.094 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 030731 22 KQAARDLIRQKRK--DRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAI 91 (172)
Q Consensus 22 ~~~aK~~~k~g~k--~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~ 91 (172)
...++.++..... .....+.++...+..++..+...+..|..+...++.+.-+....+..-.|..+..++
T Consensus 59 L~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (134)
T cd04779 59 LAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELSQQVLTLIQSL 130 (134)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHhHHHHHHH
Confidence 3456666654332 223345666777889999999999999999999999999988888877777666543
No 53
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.68 E-value=23 Score=21.59 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=18.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHH
Q 030731 22 KQAARDLIRQKRKDRALLALKK 43 (172)
Q Consensus 22 ~~~aK~~~k~g~k~~A~~~Lk~ 43 (172)
...|+.|+..|++..|+.+|..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEE 24 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHH
Confidence 3579999999999999988875
No 54
>PRK14163 heat shock protein GrpE; Provisional
Probab=50.47 E-value=1.4e+02 Score=24.48 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 030731 56 GWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 101 (172)
Q Consensus 56 ~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve 101 (172)
..+..|-.++..++.|.....++..++...+-|.++.+..++..|+
T Consensus 91 ~~~~~LLpVlDnLerAl~~~~l~~Gv~mi~k~l~~~L~k~Gv~~I~ 136 (214)
T PRK14163 91 NLLSELLPVLDDVGRAREHGELVGGFKSVAESLETTVAKLGLQQFG 136 (214)
T ss_pred HHHHHHhhhHhHHHHHHhchhHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 3444555566666666655566666666666666666665554444
No 55
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.87 E-value=37 Score=28.32 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.0
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIR 30 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k 30 (172)
+|||.++++...||.+.......+..+-.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999877777665543
No 56
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=49.78 E-value=1.3e+02 Score=23.99 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHH
Q 030731 44 KKAQEELLKQVDGWLINVEQQLADIELASKQK-AVFESLKSGTNAIKAIQSEINLE 98 (172)
Q Consensus 44 KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~-~v~~alk~g~~~Lk~~~~~~~id 98 (172)
|..+++.+..+...+.||+..+..+....... .++.++....+.|..+....++.
T Consensus 82 k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k~Gv~ 137 (193)
T COG0576 82 KYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEKLGVE 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 44456666666666677766666655543222 45555555555555555544443
No 57
>PRK14155 heat shock protein GrpE; Provisional
Probab=49.32 E-value=1.4e+02 Score=24.24 Aligned_cols=97 Identities=15% Similarity=0.047 Sum_probs=40.7
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHh--ccHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQ--KRKDRA-LLALKKK-KAQEELLKQVDGWLINVEQQLADIELAS---KQKA 76 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~--g~k~~A-~~~Lk~K-K~~ek~l~k~~~~l~~Le~~~~~Ie~a~---~n~~ 76 (172)
.+.|.+.+..++.+++....+...+... +-|.++ +..-..+ ...++.+..+...+.+|+..+..+.... ....
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~ 94 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKN 94 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHH
Confidence 3456666666666666655444333322 111111 1111111 1234444444444444444444332111 1133
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHH
Q 030731 77 VFESLKSGTNAIKAIQSEINLEDV 100 (172)
Q Consensus 77 v~~alk~g~~~Lk~~~~~~~id~V 100 (172)
++..++..-+.|.++.+..++..|
T Consensus 95 i~~Gvemi~k~~~~~L~k~GV~~I 118 (208)
T PRK14155 95 FIIGVEMTEKELLGAFERNGLKKI 118 (208)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcee
Confidence 444555544555555554444444
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.23 E-value=2.2e+02 Score=26.41 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=67.4
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRA-------------LLALKKKKAQEELLKQVDGWLINVEQQLADIELA 71 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A-------------~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a 71 (172)
..+.+....++.++.........++....+++. +.+|-.+.-|-..+..+...+.+++......+..
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766543221 1222222223334444445555555555554444
Q ss_pred HhH------HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 030731 72 SKQ------KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAY-QDEINAILGEKLSAEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 72 ~~n------~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~-~~EI~e~L~~~~~~~DedELe~EL~~L~~e~ 144 (172)
..+ .+++..++.....|+.+...++ .=+..+-.++-++++. ..-..++...++ ..+..+++.++..+....
T Consensus 184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP-~l~~~l~~~~P~ql~eL~~gy~~m~~~gy-~l~~~~i~~~i~~i~~~l 261 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETDELEEIMEDIP-KLYKELQKEFPDQLEELKEGYREMEEEGY-YLEHLDIEEEIEQIEEQL 261 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHhHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHH
Confidence 433 3455555555555555544443 1122222222222222 123334444544 334455666666665554
Q ss_pred h
Q 030731 145 F 145 (172)
Q Consensus 145 ~ 145 (172)
.
T Consensus 262 ~ 262 (560)
T PF06160_consen 262 E 262 (560)
T ss_pred H
Confidence 3
No 59
>PRK14148 heat shock protein GrpE; Provisional
Probab=48.67 E-value=1.4e+02 Score=24.02 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030731 10 YSFQLDAVIEAEKQAARDL 28 (172)
Q Consensus 10 ~~~~Le~~ie~~~~~aK~~ 28 (172)
....++..++.+..++.++
T Consensus 41 e~~~l~~~l~~l~~e~~el 59 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQF 59 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443
No 60
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=48.42 E-value=1.9e+02 Score=25.29 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=58.4
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSG 84 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g 84 (172)
-+|.|.. .+...|+.....++.|+.+=.+.-++.+ -+-.-.|+.|. .+|..++.....|..... ..
T Consensus 227 ~H~~QM~-s~~~nIe~~~~~~~~~Ldklh~eit~~L-EkI~SREK~lN------nqL~~l~q~fr~a~~~ls------e~ 292 (384)
T KOG0972|consen 227 LHLEQMN-SMHKNIEQKVGNVGPYLDKLHKEITKAL-EKIASREKSLN------NQLASLMQKFRRATDTLS------EL 292 (384)
T ss_pred HHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHH------HH
Confidence 3444443 5666777777778888876555444322 22222233222 123333333333333221 22
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030731 85 TNAIKAIQSEIN--LEDVQKLMDDTEEAKAYQDEINAILGEKL 125 (172)
Q Consensus 85 ~~~Lk~~~~~~~--id~Ve~~~de~~e~~e~~~EI~e~L~~~~ 125 (172)
-...+..+.+|+ ...++++|++++-..+.+++-...++.+.
T Consensus 293 ~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGa 335 (384)
T KOG0972|consen 293 REKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGA 335 (384)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 222233334443 67888999999999999999888887653
No 61
>PRK14149 heat shock protein GrpE; Provisional
Probab=48.35 E-value=1.2e+02 Score=24.31 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 030731 48 EELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 101 (172)
Q Consensus 48 ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve 101 (172)
++.+..+...+.+|+..+...........++.+++...+.|.++.+..++..|+
T Consensus 86 ~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~GV~~I~ 139 (191)
T PRK14149 86 EKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLARHGIEGIE 139 (191)
T ss_pred HHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 334444444444444443332221222345566666666666665555544443
No 62
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=48.11 E-value=28 Score=20.09 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030731 98 EDVQKLMDDTEEAKAYQD 115 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~ 115 (172)
+.+++++|+|.+.++..-
T Consensus 3 ~~~D~lLDeId~vLe~NA 20 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNA 20 (33)
T ss_pred chHHHHHHHHHHHHHHhH
Confidence 467888888888777653
No 63
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=45.70 E-value=82 Score=27.27 Aligned_cols=32 Identities=25% Similarity=0.156 Sum_probs=27.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 31 QKRKDRALLALKKKKAQEELLKQVDGWLINVE 62 (172)
Q Consensus 31 ~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le 62 (172)
.+++..|+.|=|+||-|-|=|+++-..|.|=.
T Consensus 297 mKNREAARECRRKKKEYVKCLENRVAVLENQN 328 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCLENRVAVLENQN 328 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHHHhHHHHHhccc
Confidence 36889999999999999999999888777643
No 64
>PHA03188 UL14 tegument protein; Provisional
Probab=45.56 E-value=1.6e+02 Score=23.78 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHH
Q 030731 80 SLKSGTNAIKAIQSEIN---LEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 80 alk~g~~~Lk~~~~~~~---id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~DedELe~EL~~L~~e~ 144 (172)
+.-.-..+|..-..-++ ++.++.+=|++-|. .+...+++++... +.+++.+.++=++|...-
T Consensus 87 eQ~a~r~iL~~nRRfL~PdFid~lD~~ED~l~d~---Ed~L~da~~~~~~~d~~~~wl~e~dEALLt~W 152 (199)
T PHA03188 87 EQTSIQKILNANRRYIAPDFIEGLDKIEDDNCDG---IDKLEDAVGGDIEHDHHEGWFCEDDEALLTQW 152 (199)
T ss_pred HHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHhh---HHHHHhhhcCCCCCCcccccccchhHHHHHHH
Confidence 33333444444444444 45555555555444 4445566765543 345556666666666544
No 65
>PRK14159 heat shock protein GrpE; Provisional
Probab=44.23 E-value=1.6e+02 Score=23.32 Aligned_cols=54 Identities=9% Similarity=-0.005 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 030731 48 EELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQ 101 (172)
Q Consensus 48 ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve 101 (172)
++.+..+.-.+.+|+..+...........++++++...+.|.++.+..++..|+
T Consensus 73 ~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~ 126 (176)
T PRK14159 73 ESFAKDLLDVLDALEAAVNVECHDEISLKIKEGVQNTLDLFLKKLEKHGVALIK 126 (176)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCcCEecC
Confidence 444444444455554444332222223445666666666666666655554443
No 66
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.99 E-value=1.8e+02 Score=25.90 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 030731 95 INLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 95 ~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~ 144 (172)
++.+.|+.+-+.+...++....|...+.+.+. .++..+..+...+
T Consensus 119 Vd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~-----~~~~~~~~~~~~l 163 (412)
T PF04108_consen 119 VDEDSVEILRENLKISIDELQAIQEQLDNSLL-----QFDNDLRKLKKQL 163 (412)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHH
Confidence 56788999999999999999999888876543 3344466666555
No 67
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.45 E-value=1.3e+02 Score=21.58 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030731 46 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL 125 (172)
Q Consensus 46 ~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~ 125 (172)
.+.+.+..+..++..|+.. +..+..-...++.+..++.+.+.+-.-+=.-+++++..++.+.++..+.--..+...
T Consensus 14 ~~q~~~~~l~~q~~~le~~---~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~- 89 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQ---LKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQ- 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444444444444333333 333344455556666677777777665544567778888888777765555555432
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 030731 126 SAEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 126 ~~~DedELe~EL~~L~~e~~ 145 (172)
.+.+...+.++...+.
T Consensus 90 ----~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 90 ----EERLREQLKELQEKIQ 105 (110)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 2445555555555543
No 68
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.37 E-value=2.1e+02 Score=24.05 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 030731 40 ALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFE-SLK-SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEI 117 (172)
Q Consensus 40 ~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~-alk-~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI 117 (172)
++++-..+-+.+.........|......+.+...+...++ .+. .|-.+++.-.+.-++..+...+..|....+....|
T Consensus 55 I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l 134 (291)
T PF10475_consen 55 ISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRL 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444333333332 111 24444444444444555555555555555555555
Q ss_pred HHHhcc
Q 030731 118 NAILGE 123 (172)
Q Consensus 118 ~e~L~~ 123 (172)
+.+|+.
T Consensus 135 ~~ll~~ 140 (291)
T PF10475_consen 135 QELLEE 140 (291)
T ss_pred HHHHhc
Confidence 555543
No 69
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.29 E-value=2e+02 Score=23.90 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030731 11 SFQLDAVIEAEKQAARD 27 (172)
Q Consensus 11 ~~~Le~~ie~~~~~aK~ 27 (172)
...|+.+++.+..+++.
T Consensus 69 ~~~l~~el~~l~~e~~e 85 (238)
T PRK14143 69 LAQLEQELESLKQELEE 85 (238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445444444443
No 70
>PRK14145 heat shock protein GrpE; Provisional
Probab=41.85 E-value=1.9e+02 Score=23.41 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 030731 13 QLDAVIEAEKQA 24 (172)
Q Consensus 13 ~Le~~ie~~~~~ 24 (172)
.|..+++.+..+
T Consensus 49 ~l~~~l~~le~e 60 (196)
T PRK14145 49 ELKQKLQQKEVE 60 (196)
T ss_pred HHHHHHHHHHHH
Confidence 333334333333
No 71
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=40.43 E-value=48 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCCCCC
Q 030731 130 EEEILAEFDNLEAQVFAYIQFELAHNFYYSVLPFPH 165 (172)
Q Consensus 130 edELe~EL~~L~~e~~~~~~~~~~~~~~~~~~~~p~ 165 (172)
+.||..+|.+|..++.+....-..-+-..|.++.|.
T Consensus 16 EkeLa~~L~eLK~eiEE~~~l~g~~~r~~SSv~~pK 51 (144)
T PF15082_consen 16 EKELAKELYELKNEIEENGMLQGSANRVYSSVQLPK 51 (144)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCcccccCCcc
Confidence 567777888888877654332233334456777775
No 72
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=40.42 E-value=2e+02 Score=23.39 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 030731 33 RKDRALLALKKKK-A----QEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDT 107 (172)
Q Consensus 33 ~k~~A~~~Lk~KK-~----~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~ 107 (172)
.+..|+.|||... . +=+..--...-+.+....+.+||+..++.++-..=+....-|+.=|..+. +++..|+ +
T Consensus 42 Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lk--kl~~~~~-i 118 (209)
T KOG2910|consen 42 ERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALK--KLQQEFD-I 118 (209)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcC-H
Confidence 4577888887622 1 12222223456778888999999999999988877777777776554333 4554443 2
Q ss_pred HHHHHHHHHHHHHhc
Q 030731 108 EEAKAYQDEINAILG 122 (172)
Q Consensus 108 ~e~~e~~~EI~e~L~ 122 (172)
.+.-.-+++..++++
T Consensus 119 deV~rimddt~ea~~ 133 (209)
T KOG2910|consen 119 DEVDRIMDDTQEAIE 133 (209)
T ss_pred HHHHHHHHhHHHHHH
Confidence 222222444444443
No 73
>PRK10869 recombination and repair protein; Provisional
Probab=40.38 E-value=3.1e+02 Score=25.48 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030731 50 LLKQVDGWLINVEQQLADIELASKQK------AVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGE 123 (172)
Q Consensus 50 ~l~k~~~~l~~Le~~~~~Ie~a~~n~------~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~ 123 (172)
.|+.....+.|.+.+...+..+.... .++..+..+...|..+ ..++ +.+..+.+.+.+.....+++..-|..
T Consensus 209 eL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~-~~~d-~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 209 QIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSEL-IGMD-SKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-hhhC-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555543211 2444555555555555 2233 34566666666666666666666654
Q ss_pred CC
Q 030731 124 KL 125 (172)
Q Consensus 124 ~~ 125 (172)
..
T Consensus 287 ~~ 288 (553)
T PRK10869 287 YL 288 (553)
T ss_pred HH
Confidence 33
No 74
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=39.59 E-value=1.9e+02 Score=22.75 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 12 FQLDAVIEAEKQAARDLIRQ-----KRKDRALLALKKKKAQEELLKQVDGWLIN 60 (172)
Q Consensus 12 ~~Le~~ie~~~~~aK~~~k~-----g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~ 60 (172)
..+..+|..+.....+.+.. ++...|..++++-+++.+....+......
T Consensus 117 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ei~~~~~~ 170 (173)
T PRK00294 117 ATFKRRLKAAQDELNESFAACWDDAARREEAERLMRRMQFLDKLAQEVRQLEER 170 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555555555543 44789999999999998877766554443
No 75
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=39.35 E-value=89 Score=25.20 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=49.6
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRAL-LALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL 81 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~-~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al 81 (172)
+.+.+++.+..+...|+.+.+.-+..-..|+++.-. .+|-.||.-..++.+-.+.+...+-+.+..-.++.++
T Consensus 90 ~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~~~pi~~d~~~~~~kk------ 163 (209)
T COG5124 90 KIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQKIEPIRWDAAKIQEKK------ 163 (209)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccccCchhHHHHhhhHHH------
Confidence 455666667777777776666555555555553322 2222233333334433344443333333333333322
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 030731 82 KSGTNAIKAIQSEINLEDVQKLMD-DTEEAKAYQDEINAILGE 123 (172)
Q Consensus 82 k~g~~~Lk~~~~~~~id~Ve~~~d-e~~e~~e~~~EI~e~L~~ 123 (172)
++ ..-...+|+|+-+.| =....-.+.++|..-.+-
T Consensus 164 ------~~-~~~n~~tDnI~ilidy~c~kf~~~~~qir~~fgI 199 (209)
T COG5124 164 ------KK-VHLNKTTDNIEILIDYLCKKFFLKPEQIRKEFGI 199 (209)
T ss_pred ------HH-HHHHhhhhhHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 11 111123566666666 233333345566655543
No 76
>PRK14153 heat shock protein GrpE; Provisional
Probab=37.51 E-value=2.2e+02 Score=22.95 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 030731 14 LDAVIEAEKQAA 25 (172)
Q Consensus 14 Le~~ie~~~~~a 25 (172)
++..|+.+..++
T Consensus 38 ~~~ei~~l~~e~ 49 (194)
T PRK14153 38 ADSETEKCREEI 49 (194)
T ss_pred chHHHHHHHHHH
Confidence 333333333333
No 77
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.97 E-value=1.2e+02 Score=23.45 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=28.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 030731 87 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEF 137 (172)
Q Consensus 87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL 137 (172)
.|++-.+.++.++.++++++.+|..++..+ . +.+|+|+-+||
T Consensus 9 ~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~------~---G~sEeeii~~L 50 (181)
T PF08006_consen 9 ELEKYLKKLPEEEREEILEYYEEYFDDAGE------E---GKSEEEIIAEL 50 (181)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhh------C---CCCHHHHHHHc
Confidence 455555678999999999999888665322 1 33556655555
No 78
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=35.51 E-value=1.2e+02 Score=20.82 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 38 LLALKKKKAQEELLKQVDGWLINVEQQLAD 67 (172)
Q Consensus 38 ~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~ 67 (172)
..++.+|+.+++.|..+..+...+|+-...
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888877766
No 79
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.83 E-value=2.7e+02 Score=23.29 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 030731 50 LLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAY 113 (172)
Q Consensus 50 ~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~ 113 (172)
.+.........+.+....|+..-...+...|+.--..+.+.+..--++.=|..+...+++....
T Consensus 116 ~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~ 179 (291)
T PF10475_consen 116 KLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLEL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHH
Confidence 3444455567777777888888888888888777766666654322344555555555555433
No 80
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=33.97 E-value=1.5e+02 Score=20.18 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH-------HHHHHHHHHHhhhh
Q 030731 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEIL-------AEFDNLEAQVFAYI 148 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe-------~EL~~L~~e~~~~~ 148 (172)
-|+|++|.+-++..++..++-.++|....+...-..|. +=++.+..|+.++.
T Consensus 8 sDNVEkLQ~mi~nTieNi~eAee~l~~~~~~~~~~~i~eKN~RR~esi~~~R~EIkDEa 66 (73)
T PRK03830 8 SDNVEKLQEMIQNTIENIEEAEETIAEEDSEKEKQAIEEKNERREESIDGMRSEIKDEA 66 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 57899999999999999999999997433221111122 22556666666553
No 81
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=33.85 E-value=3.3e+02 Score=24.01 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 030731 49 ELLKQVDGWLINVEQQLADIELA------SKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAY 113 (172)
Q Consensus 49 k~l~k~~~~l~~Le~~~~~Ie~a------~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~ 113 (172)
++|......|.+|.-+...+++. +.-.+++..|.....++.....-.+++.|..+...+......
T Consensus 102 rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~ 172 (383)
T PF04100_consen 102 RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNE 172 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444 456778888888888887776666788888777777765443
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.05 E-value=4.3e+02 Score=25.00 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HhHH-
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQK----RKDRALLALKKKKA-QEELLKQVDGWLINVEQQLADIELA----SKQK- 75 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g----~k~~A~~~Lk~KK~-~ek~l~k~~~~l~~Le~~~~~Ie~a----~~n~- 75 (172)
.|+++-..+-..|+.+....+.+.-+= .-..+...||.++. ++.-+.++.+...++..-.-..+.. +.+.
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie 304 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIE 304 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 355666666666766666665554321 11345566776665 6666666666655554443333322 1111
Q ss_pred ---HHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030731 76 ---AVFESLKSGTNAIKAI--QSEINLEDVQKLMDDTEEAKAYQDEINAILG 122 (172)
Q Consensus 76 ---~v~~alk~g~~~Lk~~--~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~ 122 (172)
.=.++++.-++-|++. ++.+++.+|+.+--+-.+.....+.|+-.+.
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234666667777776 4578999999998888887777777765544
No 83
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.98 E-value=63 Score=17.16 Aligned_cols=19 Identities=5% Similarity=-0.143 Sum_probs=14.8
Q ss_pred cchHHhHHHHHHHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEK 22 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~ 22 (172)
.+.|+.+|..|+.+.+.|.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3568888888888888775
No 84
>PRK14154 heat shock protein GrpE; Provisional
Probab=32.87 E-value=2.7e+02 Score=22.69 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=10.5
Q ss_pred chHHhHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQA 24 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~ 24 (172)
+.|...+..++.+++.....
T Consensus 55 ~~l~~el~~le~e~~elkd~ 74 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQ 74 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554433
No 85
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=32.84 E-value=1.6e+02 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030731 48 EELLKQVDGWLINVEQQLADIELASK 73 (172)
Q Consensus 48 ek~l~k~~~~l~~Le~~~~~Ie~a~~ 73 (172)
+...+.+.+...++..+...++++..
T Consensus 18 e~~~~~L~~a~~~~~~v~~~~~~t~~ 43 (78)
T PF08651_consen 18 EGLIETLRSAKSNMNRVQETVESTNT 43 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 86
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=32.56 E-value=2e+02 Score=24.04 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 030731 79 ESLKSGTNAIKAIQS-EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLE 141 (172)
Q Consensus 79 ~alk~g~~~Lk~~~~-~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~ 141 (172)
-||..+-++.++.-+ +++.+++..+++.+.|. ..|+.+++... +.+.+.+++||-.|.
T Consensus 131 PaL~~A~ki~~raa~~Gfdw~~~~~~~~k~~EE---~~El~~a~~~~--~~~~~~ieeElGDlL 189 (248)
T TIGR00444 131 PALMRAAKIQKRCAKVGFDWEDVSPVWDKVYEE---LDEVMYEARQA--VVEQNKLEEEMGDLL 189 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH---HHHHHHHHhcc--ccchHHHHHHHHHHH
Confidence 356666666666654 56777777777777766 45556666432 123455666666665
No 87
>PRK14127 cell division protein GpsB; Provisional
Probab=32.36 E-value=2e+02 Score=21.02 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=21.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 030731 87 AIKAIQSEINLEDVQKLMDDTEEAKAYQ 114 (172)
Q Consensus 87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~ 114 (172)
..+.-..+.+.+.|+..+|++.+..+..
T Consensus 15 eF~~~~RGYd~~EVD~FLd~V~~dye~l 42 (109)
T PRK14127 15 EFKTSMRGYDQDEVDKFLDDVIKDYEAF 42 (109)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344456788999999999998876654
No 88
>PRK04406 hypothetical protein; Provisional
Probab=31.13 E-value=1.4e+02 Score=20.21 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHhh
Q 030731 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVFA 146 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~~ 146 (172)
++.++.=+++++..+..++..-+-|+..+. .-.-+.|...|..|...+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777766666665543 12336677777777666643
No 89
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.70 E-value=1.5e+02 Score=19.30 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=17.9
Q ss_pred chHHhHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAAR 26 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK 26 (172)
+.|..||..|+..|.++...+.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988876554
No 90
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=30.69 E-value=1.6e+02 Score=27.68 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCC--CCCCCcccc
Q 030731 94 EINLEDVQKLMDDTEEAKAYQDEINAILGEK-LSAEDEEEILAEFDNLEAQVFAYIQFELAHNFYYSVL--PFPHFSLSK 170 (172)
Q Consensus 94 ~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~-~~~~DedELe~EL~~L~~e~~~~~~~~~~~~~~~~~~--~~p~~~~~~ 170 (172)
.++.+.+..-++++.+.+...+.-==..+.+ ++|.+-|-|.+||.+|+.+--..+..+-|....++.+ ++|--|+-|
T Consensus 24 ~~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~IsD~eYD~L~~eL~~LE~~~p~~~~~~spt~~vg~kv~H~~PMlSL~k 103 (562)
T PRK08097 24 DWSPARAQEEIAALQQQLAQWDDAYWRQGKSEVDDEVYDQLRARLTQWQRCFGGPEPRDVPLPPLNGKVLHPVAHTGVKK 103 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHhCcCcCCCCCCCCCCCCceECCCCcccccc
Confidence 3555555555555555544444332233444 3466677788889888776432222222222222222 556666655
Q ss_pred c
Q 030731 171 Q 171 (172)
Q Consensus 171 ~ 171 (172)
-
T Consensus 104 ~ 104 (562)
T PRK08097 104 L 104 (562)
T ss_pred c
Confidence 3
No 91
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.36 E-value=1.5e+02 Score=20.14 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCC
Q 030731 53 QVDGWLINVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 53 k~~~~l~~Le~~~~~Ie~a~~n-~~v~~alk~g~~~Lk~~~~~~~ 96 (172)
.+...+..|++++..+++.... -+.+..|+.|...++..++.++
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~ 51 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQ 51 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888887654 4578899999999998875543
No 92
>PF14282 FlxA: FlxA-like protein
Probab=30.06 E-value=2.1e+02 Score=20.48 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=38.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLA 66 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~ 66 (172)
....+..|..+|..+...++.....+.. -+...-.+.+++..+|..+..++..+..-..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888876653321 2223345667777777777777766655443
No 93
>PRK05560 DNA gyrase subunit A; Validated
Probab=29.50 E-value=5.5e+02 Score=25.14 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 030731 57 WLINVEQQLADIELASKQKAVFESLKS--------GTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE 128 (172)
Q Consensus 57 ~l~~Le~~~~~Ie~a~~n~~v~~alk~--------g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~ 128 (172)
...++..++.-|..+.+..++...|.. +..+|.--...++-.+++++..++.+.....++...+|+..- .
T Consensus 381 ~~~~~d~vI~iir~s~~~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~--~ 458 (805)
T PRK05560 381 ALDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPE--R 458 (805)
T ss_pred HHHhhHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--H
Confidence 356666777777777777777666654 223333333456777899999999999999999999998531 0
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 030731 129 DEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 129 DedELe~EL~~L~~e~~~~ 147 (172)
=..-+-+||.++.....+.
T Consensus 459 l~~~i~~EL~~ikkkfg~~ 477 (805)
T PRK05560 459 LLEIIKEELLEIKEKFGDP 477 (805)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 1133567777777766543
No 94
>PRK14147 heat shock protein GrpE; Provisional
Probab=29.35 E-value=2.8e+02 Score=21.75 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=9.6
Q ss_pred hHHhHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQ 23 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~ 23 (172)
.|...+..|+.+++....
T Consensus 22 ~l~~~l~~l~~e~~elkd 39 (172)
T PRK14147 22 PLKAEVESLRSEIALVKA 39 (172)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355555555555555443
No 95
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=29.24 E-value=2.4e+02 Score=20.86 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Q 030731 48 EELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 48 ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~ 96 (172)
++.+..+...+.+|+..+...........+++.+..-.+-|..+....+
T Consensus 35 ~~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l~~~L~~~G 83 (137)
T cd00446 35 EKFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQLLDVLEKHG 83 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3444444444444444443332222223344444444444444443333
No 96
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=28.88 E-value=5.2e+02 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 030731 98 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFA 146 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~ 146 (172)
-+++++..++.+......++...|+. + .+=+-+||.+|.....+
T Consensus 404 ~e~~k~~~e~~~l~~~i~~~~~~L~~-~----~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 404 FDIDKNQKEIRILNKELKSVEKNLKS-I----KGYAINFIDKLLAKYSK 447 (635)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHhCC
Confidence 34455555566665556666666654 1 12344556666555543
No 97
>PRK10547 chemotaxis protein CheA; Provisional
Probab=28.25 E-value=3.1e+02 Score=26.31 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 030731 45 KAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAY 113 (172)
Q Consensus 45 K~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~ 113 (172)
.++.-.++.....+..++..+..+|..-.+.+.++.+=.+...+|-.-.-++++.+..+.-.+++.++.
T Consensus 5 ~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld~ 73 (670)
T PRK10547 5 DFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLDE 73 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHHH
Confidence 455667788888999999999999998889999999999999999888878777655555555444443
No 98
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=27.72 E-value=1.9e+02 Score=19.29 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=39.7
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLI-RQKRKDRALLALKKKKAQEELLKQVDGWLINV 61 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~-k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~L 61 (172)
+++|.-....|....+.+...+-.+. .-|+.+.+...||-++-|.....+.++++..|
T Consensus 7 ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 7 IEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555556666666666655554443 33677888888888888888888888877665
No 99
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.63 E-value=1.7e+02 Score=24.28 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQKRKD-RALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGT 85 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g~k~-~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~ 85 (172)
|...+..|..+|+.+..++-.+...+.|. .-..---+.-.++..+++..-.+.+|+.++-.+++-..+..-|..++...
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedi 206 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDI 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44445555555555544444433322211 00112233445677788888889999999999999999988888888887
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 030731 86 NAIKAIQSEINLEDVQKLMDD 106 (172)
Q Consensus 86 ~~Lk~~~~~~~id~Ve~~~de 106 (172)
.-.=.-|...+...-+.+-|+
T Consensus 207 eyYve~n~d~Df~ede~iYdd 227 (233)
T PF04065_consen 207 EYYVESNQDPDFEEDEDIYDD 227 (233)
T ss_pred HHHHHcCCCCcccchHhHhhc
Confidence 766666655553333444443
No 100
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.42 E-value=1.4e+02 Score=20.35 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCC
Q 030731 54 VDGWLINVEQQLADIELASKQK-AVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 54 ~~~~l~~Le~~~~~Ie~a~~n~-~v~~alk~g~~~Lk~~~~~~~ 96 (172)
+...+..|++++.++++..... +.+..|+.|...++..++.+.
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~ 50 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLK 50 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888876554 567889999999998875543
No 101
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.29 E-value=1.6e+02 Score=19.95 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCC
Q 030731 53 QVDGWLINVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 53 k~~~~l~~Le~~~~~Ie~a~~n-~~v~~alk~g~~~Lk~~~~~~~ 96 (172)
.+...+..|++++.++++-... -+.+..|+.|...++..++.++
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~ 49 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLD 49 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999887654 4578899999999998886554
No 102
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=27.11 E-value=2.3e+02 Score=25.85 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhhhhhhh------------------hcccCCC
Q 030731 98 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFAYIQFEL------------------AHNFYYS 159 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~~~~~~------------------~~~~~~~ 159 (172)
+++..+-.++.|.+.-+++.-.+|... .+|.+..|+.+...|..+-....+ ..-..++
T Consensus 25 ~ellqlk~dl~ELlsLteellaaide~----p~D~l~de~re~~~E~~D~~aag~~~~s~t~p~~e~~e~~e~~~~L~Gs 100 (486)
T KOG2185|consen 25 DELLQLKPDLPELLSLTEELLAAIDEV----PDDGLLDEKRERLLEEADIVAAGLNHDSGTKPEHEEPEKTEEKKDLDGS 100 (486)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHhhhcC----CCcchHHHHHHHHhhhhhhhhccccCCcccCcccccchhcchhhhccCC
Confidence 344444445555555555444444432 234445556555555543211110 1125678
Q ss_pred CCCCCCCcc
Q 030731 160 VLPFPHFSL 168 (172)
Q Consensus 160 ~~~~p~~~~ 168 (172)
.|.+||.++
T Consensus 101 Kcsaph~ss 109 (486)
T KOG2185|consen 101 KCSAPHTSS 109 (486)
T ss_pred cccccccCC
Confidence 888888765
No 103
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.99 E-value=3.5e+02 Score=22.05 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030731 99 DVQKLMDDTEEAKAYQDEINAIL 121 (172)
Q Consensus 99 ~Ve~~~de~~e~~e~~~EI~e~L 121 (172)
..++--+++.+.++..+++.++|
T Consensus 75 ~s~~~A~~V~~RI~~vE~Va~AL 97 (201)
T PF11172_consen 75 SSEDAAEEVSDRIDAVEDVADAL 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 104
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.72 E-value=1.2e+02 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHH
Q 030731 127 AEDEEEILAEFDNL 140 (172)
Q Consensus 127 ~~DedELe~EL~~L 140 (172)
+.|+++++.+...+
T Consensus 150 dddEdDl~~~~~q~ 163 (169)
T COG3078 150 DDDEDDLERDEKQE 163 (169)
T ss_pred CCchHHHHHHHHHH
Confidence 45677777766554
No 105
>PRK14158 heat shock protein GrpE; Provisional
Probab=26.40 E-value=3.4e+02 Score=21.80 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 030731 9 IYSFQLDAVIEAEKQAARDL 28 (172)
Q Consensus 9 ~~~~~Le~~ie~~~~~aK~~ 28 (172)
..+..++.+++.+..++..+
T Consensus 40 ~~~~~le~~l~~le~e~~el 59 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAAN 59 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33445555555544444433
No 106
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=26.37 E-value=3e+02 Score=21.06 Aligned_cols=9 Identities=0% Similarity=0.235 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 030731 80 SLKSGTNAI 88 (172)
Q Consensus 80 alk~g~~~L 88 (172)
|+..+.++|
T Consensus 134 Av~~A~kil 142 (167)
T PRK14475 134 AAQAAETVL 142 (167)
T ss_pred HHHHHHHHH
Confidence 444444444
No 107
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=3.4e+02 Score=24.95 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHhhh
Q 030731 74 QKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL--SAEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 74 n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~--~~~DedELe~EL~~L~~e~~~~ 147 (172)
-..+++-|..+..-+...-...+++.||+++|..--- ++.+..-+..+- ...++++..+|..++......+
T Consensus 132 as~iv~~l~~aa~~I~~~e~~~G~~~VE~~LDs~hai---~~~~~~R~~rp~~~s~~e~~~~~ee~~e~~~s~~~~ 204 (495)
T COG2719 132 ASDIVDYLEFAADYIAECEERHGVEEVERFLDSCHAI---MEYGVDRYKRPKKISSEEERARQEEREEYLQSQVND 204 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHhCchhhcCCcccccccchhhHHHHHHHhhcccch
Confidence 3567788888888888888889999999999986544 445555555443 3567777777777776544434
No 108
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=25.81 E-value=2.6e+02 Score=20.45 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 030731 61 VEQQLADIELASK 73 (172)
Q Consensus 61 Le~~~~~Ie~a~~ 73 (172)
++.+-..|.....
T Consensus 8 v~~I~~~i~~i~~ 20 (151)
T cd00179 8 VEEIRGNIDKISE 20 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 109
>PRK11637 AmiB activator; Provisional
Probab=25.58 E-value=4.7e+02 Score=23.10 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQE--------ELLKQV-DGWLINVEQQLADIELASK 73 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~e--------k~l~k~-~~~l~~Le~~~~~Ie~a~~ 73 (172)
+.+.+.+.+..++.+|+.....+..+-..=.......--+.+-+|. -.+... .+.+..+-..+..|..+
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~-- 167 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQA-- 167 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHh
Q 030731 74 QKAVFESLKSGTNAIKAIQSEIN--LEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 74 n~~v~~alk~g~~~Lk~~~~~~~--id~Ve~~~de~~e~~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~ 145 (172)
+..+++.|......|......+. ...++.+..+........+.-..--...+. .-+..+...+|.+|..+..
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 110
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.34 E-value=2.1e+02 Score=19.49 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCC
Q 030731 53 QVDGWLINVEQQLADIELASKQ-KAVFESLKSGTNAIKAIQSEI 95 (172)
Q Consensus 53 k~~~~l~~Le~~~~~Ie~a~~n-~~v~~alk~g~~~Lk~~~~~~ 95 (172)
.+...+..|++++..+++-... -+.+..|+.|...++...+.+
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L 50 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTL 50 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888887654 357889999999998877544
No 111
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=25.25 E-value=63 Score=23.82 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=27.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 24 AARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLA 66 (172)
Q Consensus 24 ~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~ 66 (172)
.|+.+.++|+..+|+.+++.--.--..=.... .++.++..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-~lh~~QG~if 43 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-LLHRLQGTIF 43 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-HHHHHHhHHH
Confidence 68999999999999998876443322111111 5666666665
No 112
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.56 E-value=2.2e+02 Score=18.83 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=21.2
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKK 43 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~ 43 (172)
+.|.++|--|...|++...+- .-+..-+..|-.+.||
T Consensus 28 ~El~eRIalLq~EIeRlkAe~--~kK~~srsAAeaLFrr 64 (65)
T COG5509 28 AELEERIALLQAEIERLKAEL--AKKKASRSAAEALFRR 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhccHHHHHHHHhc
Confidence 357778888888887774432 2223345555555543
No 113
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.41 E-value=4e+02 Score=21.87 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=56.1
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRK--DRALLALKKKKAQEELLKQVDGWLINVEQQLADIEL------ASKQK 75 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k--~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~------a~~n~ 75 (172)
.+.+......|...++....++....+.|.+ ..+-..+.+=+-+...+. ....++..++..+.. .-.+.
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~---~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ---NLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 4556666778888888888888888877765 334444444444444444 444455555555533 33577
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 030731 76 AVFESLKSGTNAIKAIQS 93 (172)
Q Consensus 76 ~v~~alk~g~~~Lk~~~~ 93 (172)
.+-.+++.+...|+.|.+
T Consensus 124 ~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 778888888888888854
No 114
>PRK14151 heat shock protein GrpE; Provisional
Probab=24.35 E-value=3.6e+02 Score=21.27 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.3
Q ss_pred hHHhHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQ 23 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~ 23 (172)
.|..++..++.+++....
T Consensus 24 ~l~~~i~~le~e~~el~d 41 (176)
T PRK14151 24 DLTARVQELEEQLAAAKD 41 (176)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 115
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.33 E-value=1.6e+02 Score=19.15 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=20.1
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDL 28 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~ 28 (172)
....+++|...||+++.....+++.+
T Consensus 26 ~~ltiEqRLa~LE~rL~~ae~ra~~a 51 (60)
T PF11471_consen 26 APLTIEQRLAALEQRLQAAEQRAQAA 51 (60)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998887777654
No 116
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.28 E-value=2e+02 Score=20.55 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCC
Q 030731 54 VDGWLINVEQQLADIELASKQK-AVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 54 ~~~~l~~Le~~~~~Ie~a~~n~-~v~~alk~g~~~Lk~~~~~~~ 96 (172)
+...+..|++++..|++-.... +.+..|+.|...++..++.++
T Consensus 10 FEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~ 53 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILD 53 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888876554 567889999999888775443
No 117
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.17 E-value=2e+02 Score=19.68 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCC
Q 030731 54 VDGWLINVEQQLADIELASKQK-AVFESLKSGTNAIKAIQSEI 95 (172)
Q Consensus 54 ~~~~l~~Le~~~~~Ie~a~~n~-~v~~alk~g~~~Lk~~~~~~ 95 (172)
+...+..|++++..+++..... +.+..|+.|...++..++.+
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L 54 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKL 54 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888776543 56788999999888877544
No 118
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=24.16 E-value=3.2e+02 Score=22.87 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 030731 79 ESLKSGTNAIKAIQS-EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQ 143 (172)
Q Consensus 79 ~alk~g~~~Lk~~~~-~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e 143 (172)
-||-.+.++.++..+ +++.++.+.++..+.|. ..|+.+++.. .|.+.+++||-.+.-.
T Consensus 142 PaL~~a~KiqkrAa~~Gf~w~~~~~~~~kl~EE---~~El~~Ai~~----~~~~~l~eElGDlLf~ 200 (262)
T PRK09562 142 PALMRAYKIQKKAARVGFDWESLEPVLDKVEEE---IDELKEALAQ----GDQAKIEEEFGDLLFA 200 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH---HHHHHHHHHc----cChhhHHHHHHHHHHH
Confidence 356667777776654 57767777777666665 4555566543 2455666666666533
No 119
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.14 E-value=2.3e+02 Score=18.94 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHhhh
Q 030731 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~~~ 147 (172)
...++.=+.+++..+..++..-+-|+..+. .-.-+.|...|..|...+...
T Consensus 3 ~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 3 DSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556666777777776666666665443 123366777788887766543
No 120
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=23.90 E-value=4.6e+02 Score=24.55 Aligned_cols=74 Identities=12% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHhhhhh
Q 030731 75 KAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKL-SAEDEEEILAEFDNLEAQVFAYIQ 149 (172)
Q Consensus 75 ~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~-~~~DedELe~EL~~L~~e~~~~~~ 149 (172)
..++++++.....|+.+.+.++ .+|...++++........+++.-|.... ...+-.+|.+.=+.|..++...++
T Consensus 141 ~~l~~~in~~~~~L~~l~~~i~-~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i~ 215 (552)
T COG1256 141 QTLVNQINNTYEQLTDLRKDIN-AEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIG 215 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhhcc
Confidence 3455566666666666666554 3344444444444444444444443321 123445566666666666654443
No 121
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=23.60 E-value=2.8e+02 Score=19.87 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HhccCCC--CCCHHHHHHHHHHHHHHHhhh
Q 030731 98 EDVQKLMDDTEEAKAYQDE-INA-ILGEKLS--AEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~E-I~e-~L~~~~~--~~DedELe~EL~~L~~e~~~~ 147 (172)
+.|+.+.+.+....-...| |.. +|-.++. +++|+||..++++|-.-....
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiAlKAGLgeieI~d~eL~~aFeeiAaRFR~g 63 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRGG 63 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHhcC
Confidence 4555565555555444333 333 4556665 689999999999998877543
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.57 E-value=6.2e+02 Score=23.78 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 030731 98 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~ 144 (172)
..+..+.+++.+..+..++|+.-|+..-+..+-..+.++++.+..++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 45566666666666667777777765433234345555555555444
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.46 E-value=6.2e+02 Score=23.76 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030731 39 LALKKKKAQEELLKQVD 55 (172)
Q Consensus 39 ~~Lk~KK~~ek~l~k~~ 55 (172)
.+..++..+++.+.++.
T Consensus 425 ~l~e~l~~l~~~l~~~~ 441 (650)
T TIGR03185 425 QLLEELGEAQNELFRSE 441 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 124
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=23.45 E-value=2.3e+02 Score=18.68 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCC
Q 030731 54 VDGWLINVEQQLADIELASKQK-AVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 54 ~~~~l~~Le~~~~~Ie~a~~n~-~v~~alk~g~~~Lk~~~~~~~ 96 (172)
+...+..|++++.++++-.... +.+..|+.|...++..++.++
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~ 46 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLA 46 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888876554 567889999999988876554
No 125
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.42 E-value=8.9e+02 Score=25.53 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 030731 35 DRALLALKKKKAQEELLKQVDGWLINVEQQLA-DIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAY 113 (172)
Q Consensus 35 ~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~-~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~ 113 (172)
+.|...|-+-+....+.+....-+.+|-+.+. -+.+-..+.+.++.+. ..+|..- =..+.+.|..++++|++....
T Consensus 1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA--~~vL~l~-lp~tpeqi~~L~~~I~e~v~s 1526 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVA--EEVLALE-LPLTPEQIQQLTGEIQERVAS 1526 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcc-CCCCHHHHHHHHHHHHHHHHh
Confidence 44555554444444444443333333332222 2222234444455443 3445421 134699999999999999999
Q ss_pred HHHHHHHhccCCCCCC
Q 030731 114 QDEINAILGEKLSAED 129 (172)
Q Consensus 114 ~~EI~e~L~~~~~~~D 129 (172)
...|..+|+.+..+++
T Consensus 1527 L~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1527 LPNVDAILSRTKGDIA 1542 (1758)
T ss_pred cccHHHHHHhhhhhHH
Confidence 9999999998765543
No 126
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.14 E-value=4.2e+02 Score=21.60 Aligned_cols=16 Identities=19% Similarity=-0.305 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEK 22 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~ 22 (172)
|...+..++.+++...
T Consensus 36 ~~~~i~~le~e~~elk 51 (209)
T PRK14141 36 EPDPLEALKAENAELK 51 (209)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444555555554443
No 127
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.76 E-value=4e+02 Score=21.29 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=18.0
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQK 32 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g 32 (172)
....+..+..|+.+|++....++.++-.|
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~~ag 32 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMVDSG 32 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666544
No 128
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=22.69 E-value=5.4e+02 Score=22.75 Aligned_cols=14 Identities=21% Similarity=0.219 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 030731 132 EILAEFDNLEAQVF 145 (172)
Q Consensus 132 ELe~EL~~L~~e~~ 145 (172)
++++|+..|...+.
T Consensus 79 ~~~~e~~~l~~~l~ 92 (359)
T PRK00591 79 MAKEELKELEERLE 92 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666655554
No 129
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.49 E-value=3.1e+02 Score=24.87 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=37.2
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELA 71 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a 71 (172)
|+.-++.|...|+.+|+........+-. + ...-.+..+...+++.+..+...+..|+.++..++..
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~--~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL-N--PDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556677777777777776666555432 1 1111222444555556666666666666666655544
No 130
>PRK14157 heat shock protein GrpE; Provisional
Probab=22.33 E-value=3.9e+02 Score=22.15 Aligned_cols=16 Identities=6% Similarity=-0.290 Sum_probs=7.6
Q ss_pred HHhHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEK 22 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~ 22 (172)
|...+..++.+++...
T Consensus 82 ~~~~l~~le~e~~e~k 97 (227)
T PRK14157 82 TLTPLGQAKKEAAEYL 97 (227)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444445555555443
No 131
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.15 E-value=3.5e+02 Score=20.33 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Q 030731 52 KQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEIN 96 (172)
Q Consensus 52 ~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~ 96 (172)
.++.+.+..+.++...|...++ .|......+..+|.-++
T Consensus 80 ~k~ae~L~kv~els~~L~~~~~------lL~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 80 AKFAEQLEKVNELSQQLSRCQS------LLNQTVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhCC
Confidence 3444445555555555555444 33344444445554443
No 132
>PRK06746 peptide chain release factor 2; Provisional
Probab=22.07 E-value=3.1e+02 Score=23.94 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 030731 98 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFA 146 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~ 146 (172)
..+-...+.+....++..+..+++....+..-.+++..|+..|..++..
T Consensus 24 ~~~v~~~~~~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~ 72 (326)
T PRK06746 24 KDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNE 72 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555553222211223456666666665543
No 133
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=21.95 E-value=4.6e+02 Score=21.70 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 030731 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~ 145 (172)
++.++++++-.++-... |.++.+.-|...|-+++...+..|..-+.
T Consensus 224 v~~Ld~L~~~~~~i~~~---VDel~~slYpP~d~~~v~~~~~~L~~~l~ 269 (275)
T PF13324_consen 224 VAQLDKLLDLCQEISPS---VDELASSLYPPQDPDEVRAAAAKLSSVLK 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHSSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhH---HHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 66677777776666444 44455555556788999999998887665
No 134
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.79 E-value=7.4e+02 Score=24.03 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030731 56 GWLINVEQQLADIELASKQKAVFESLKS--------GTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA 127 (172)
Q Consensus 56 ~~l~~Le~~~~~Ie~a~~n~~v~~alk~--------g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~ 127 (172)
..+.++..++.-|..+.+..++...|.. +..+|.--...++-.+++++..+..+.....+++..+|++.-
T Consensus 377 ~~~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~-- 454 (738)
T TIGR01061 377 KAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEK-- 454 (738)
T ss_pred HHHHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--
Confidence 3344566666666666655555555443 233333334457777889999999999999999999998531
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 030731 128 EDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 128 ~DedELe~EL~~L~~e~~~~ 147 (172)
.=..-+-+||.++.....+.
T Consensus 455 ~~~~~i~~el~~ik~kfg~~ 474 (738)
T TIGR01061 455 ARNKLLKKQLEEYKKQFAQQ 474 (738)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 11233667777777776643
No 135
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=21.62 E-value=3.9e+02 Score=20.67 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=33.0
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRK-DRALLALKKKKAQ 47 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k-~~A~~~Lk~KK~~ 47 (172)
|++.+..+...+++.+......-+-.++++.| .++....|+...+
T Consensus 88 q~~~i~ekR~~l~ke~~~~~~~r~~wlrK~dkY~rw~~~~kr~~r~ 133 (147)
T PF02090_consen 88 QEQQIQEKRRQLEKEKQEQQEQRKHWLRKEDKYDRWQQRQKRLRRL 133 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888754 6666666654443
No 136
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=4.6e+02 Score=21.55 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=84.0
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKK-KKAQE---ELLKQVDGWLINVEQQLADIELASKQKAVFES 80 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~-KK~~e---k~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a 80 (172)
++|+.-..-|+++=+-+..+|-.-+.+ .|+.+..+ |++.- +.--.+..++.++..++.+|+.-.. .++.
T Consensus 24 ~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~---alEn 96 (221)
T KOG1656|consen 24 QKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQRE---ALEN 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHc
Confidence 445555555555555555555444332 24444333 33322 2234566778888888888876543 3444
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHH-----HHHHHHHHHHHHHHHHHHhccCCC-CCC--HHHHHHHHHHHHHHHhhhhhhh
Q 030731 81 LKSGTNAIKAIQSEIN-LEDVQK-----LMDDTEEAKAYQDEINAILGEKLS-AED--EEEILAEFDNLEAQVFAYIQFE 151 (172)
Q Consensus 81 lk~g~~~Lk~~~~~~~-id~Ve~-----~~de~~e~~e~~~EI~e~L~~~~~-~~D--edELe~EL~~L~~e~~~~~~~~ 151 (172)
-...+.+|+.+...-. .-.++. =+|++-+.+..+.+|.+=|+..++ .+. .+==++||..=..++...-...
T Consensus 97 A~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~ 176 (221)
T KOG1656|consen 97 ANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDK 176 (221)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHH
Confidence 4444555555543322 222222 235666677778888888888876 466 2322344544444444333333
Q ss_pred hhcccCCCCCCCCCCcccc
Q 030731 152 LAHNFYYSVLPFPHFSLSK 170 (172)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~ 170 (172)
--.....-++++|+.|+..
T Consensus 177 ~ll~~~~p~v~LP~vPs~~ 195 (221)
T KOG1656|consen 177 ELLDIRAPPVPLPDVPSIA 195 (221)
T ss_pred HHhccCCCCCCCCCCCccc
Confidence 3333444457788877654
No 137
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.40 E-value=4.2e+02 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=12.5
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDL 28 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~ 28 (172)
+.|.+.+..+..+|+.+...+-..
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444
No 138
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=21.35 E-value=1.6e+02 Score=22.57 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 030731 16 AVIEAEKQAARDLIRQKRKDRALLALKK 43 (172)
Q Consensus 16 ~~ie~~~~~aK~~~k~g~k~~A~~~Lk~ 43 (172)
..+......|.+++++|+++.|...|+-
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~ 100 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKL 100 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3456778899999999999888887764
No 139
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=21.28 E-value=2.1e+02 Score=19.86 Aligned_cols=34 Identities=24% Similarity=0.091 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 030731 15 DAVIEAEKQAARDLIRQKRKDRALLALKKKKAQE 48 (172)
Q Consensus 15 e~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~e 48 (172)
++-+|+-...|+.+...|++..|-.||.-=--|-
T Consensus 36 ~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~ 69 (80)
T PF13763_consen 36 QQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYF 69 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4557888999999999999999999887644443
No 140
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=21.22 E-value=4.6e+02 Score=22.29 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CCCCHHHHHHHHHHHHHHHhhhhh
Q 030731 76 AVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK-L-SAEDEEEILAEFDNLEAQVFAYIQ 149 (172)
Q Consensus 76 ~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~-~-~~~DedELe~EL~~L~~e~~~~~~ 149 (172)
.++..+......|..+...++ ++|...++++........+++.-|... . ...+-.+|.++-+.|..++...++
T Consensus 138 ~l~~~~n~~~~~L~~~~~~~~-~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~~LS~~v~ 212 (322)
T TIGR02492 138 ALANSFNQTSNELQDLRKGIN-AEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLKELSQLIG 212 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHHHHHhHcC
Confidence 344444455555555544433 445555555555555554555444321 1 233445677777777777765543
No 141
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.22 E-value=3.8e+02 Score=20.41 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 030731 80 SLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEE 132 (172)
Q Consensus 80 alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedE 132 (172)
.++.-...|+.+.+.++.+++...+..+...+.....--+.|.++...++.+|
T Consensus 94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee 146 (169)
T PF07106_consen 94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEE 146 (169)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 55666677888899999999999999998888888777777766544455444
No 142
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.21 E-value=3.4e+02 Score=19.81 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=28.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHh
Q 030731 93 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 93 ~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~ 145 (172)
+..+.+.|+++++|+++..+..+ ++|.++-+ +..-++|-.-.+.+..+..
T Consensus 3 ~~~~~~~~~~l~~el~~L~d~lE---evL~ssg~~a~~e~~~lR~r~~~~Lk~~r 54 (104)
T COG4575 3 REFTDDAIDQLLAELQELLDTLE---EVLKSSGSLAGDEAEELRSKAESALKEAR 54 (104)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH---HHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 34455677999999999966555 45665443 2223334444444444443
No 143
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=4.2e+02 Score=20.89 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=38.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEEL 50 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~ 50 (172)
.|++-.++++.+|.+|.+...++.-.++...|+.+.-|.++....
T Consensus 116 ~l~~lk~q~q~ri~q~~~qlge~~esk~~~~Al~~i~rlrY~~~~ 160 (168)
T KOG3192|consen 116 DLKQLKSQNQERIAQCKQQLGEAFESKKYDEALKKILRLRYWYEL 160 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 477778889999999999999999999999999888887776543
No 144
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.95 E-value=3.4e+02 Score=19.73 Aligned_cols=11 Identities=0% Similarity=0.078 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q 030731 9 IYSFQLDAVIE 19 (172)
Q Consensus 9 ~~~~~Le~~ie 19 (172)
++..++|..+.
T Consensus 37 q~L~kiE~~~~ 47 (102)
T PF01519_consen 37 QRLTKIENKLD 47 (102)
T ss_dssp TB-BHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 145
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.88 E-value=3e+02 Score=19.17 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=11.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhc
Q 030731 7 VMIYSFQLDAVIEAEKQAARDLIRQK 32 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~~~aK~~~k~g 32 (172)
+....+.|..+.......+.+..+.|
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 33344444444444444444444444
No 146
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.73 E-value=2e+02 Score=20.09 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=24.1
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKR 33 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~ 33 (172)
|+-|.|+-+...|+.+-+....+.++++..++
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34577788888888888888888888876544
No 147
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.70 E-value=2.2e+02 Score=17.55 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcC
Q 030731 56 GWLINVEQQLADIELASKQK-AVFESLKSGTNAIKAIQSE 94 (172)
Q Consensus 56 ~~l~~Le~~~~~Ie~a~~n~-~v~~alk~g~~~Lk~~~~~ 94 (172)
..+..|++++.++++-.... +.+.-|+.|...++..++.
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~ 42 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQER 42 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888665443 4667788888888876644
No 148
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.55 E-value=3.3e+02 Score=19.43 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHH-HhccCCC--CCCHHHHHHHHHHHHHHHhhhhh
Q 030731 99 DVQKLMDDTEEAKAYQ-DEINA-ILGEKLS--AEDEEEILAEFDNLEAQVFAYIQ 149 (172)
Q Consensus 99 ~Ve~~~de~~e~~e~~-~EI~e-~L~~~~~--~~DedELe~EL~~L~~e~~~~~~ 149 (172)
.++.+.+.+....-.. +-|.. ++-.++. +++|+||..+++++-........
T Consensus 10 eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 10 EIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhcccc
Confidence 3444444444443332 33443 3445554 68999999999999988875543
No 149
>PRK05589 peptide chain release factor 2; Provisional
Probab=20.52 E-value=4e+02 Score=23.27 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 030731 97 LEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQVFA 146 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~ 146 (172)
+..+-+..+++....++..++.+++... ++..-+++..|+..|...+..
T Consensus 23 l~~~v~~~~~~~~~~~~~~~~~~l~~~~-d~e~~~~a~~e~~~l~~~l~~ 71 (325)
T PRK05589 23 LKDKLDKYNHLRNRIEDIEVLCEMMSEE-DDEMKKEIISEVKNIKEEIDR 71 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555566666666321 111123555666666655543
No 150
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.43 E-value=7.6e+02 Score=23.63 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=47.9
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELA 71 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a 71 (172)
+-++|++.+.+|....++.....-+++. .-+.+|+.|..++++++....-..++.+=+.....|
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAe-----yGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkea 72 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAE-----YGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEA 72 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888887777666654 447889999999998888877777666666655554
No 151
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.38 E-value=3.8e+02 Score=20.08 Aligned_cols=7 Identities=14% Similarity=-0.093 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 030731 9 IYSFQLD 15 (172)
Q Consensus 9 ~~~~~Le 15 (172)
+|+..+.
T Consensus 68 qRId~vd 74 (126)
T PF07889_consen 68 QRIDRVD 74 (126)
T ss_pred HHHHHHH
Confidence 3333333
No 152
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.27 E-value=6.6e+02 Score=22.82 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 44 KKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEI---NLEDVQKLMDDTEEAKAYQDEINAI 120 (172)
Q Consensus 44 KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~---~id~Ve~~~de~~e~~e~~~EI~e~ 120 (172)
.++.+-.|.+....++-|+..+..|+..- .|++..+.+..+-+.+.+.+ ++.+. ..+.|-++
T Consensus 333 ~rR~~~~l~k~~~rl~il~g~~~~i~~id---~vi~~ir~s~~ak~~L~~~l~~~~~~~~------------qa~~IL~m 397 (445)
T cd00187 333 TRRKEYELGKAEARLHILEGLLKAILNID---EVINLIRSSDEAKKALIEELEKLGFSEI------------QADAILDM 397 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHhcCCCHH------------HHHHHHHh
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHhh
Q 030731 121 LGEKLSAEDEEEILAEFDNLEAQVFA 146 (172)
Q Consensus 121 L~~~~~~~DedELe~EL~~L~~e~~~ 146 (172)
==..++..+-+.|.+|++++..+...
T Consensus 398 ~L~~LT~~e~~kL~~E~~~l~~ei~~ 423 (445)
T cd00187 398 RLRRLTKLEREKLLKELKELEAEIED 423 (445)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Done!