Query 030731
Match_columns 172
No_of_seqs 115 out of 699
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gd5_A Charged multivesicular 99.7 4.2E-17 1.4E-21 128.1 4.9 140 6-149 25-169 (179)
2 4abm_A Charged multivesicular 99.5 3.3E-14 1.1E-18 97.9 8.4 67 2-69 13-79 (79)
3 3frt_A Charged multivesicular 99.5 8.1E-14 2.8E-18 112.6 6.9 144 6-149 25-169 (218)
4 3um3_B Charged multivesicular 99.4 1.1E-12 3.6E-17 94.6 9.6 55 93-147 1-58 (104)
5 2luh_B Vacuolar protein-sortin 98.8 6.1E-10 2.1E-14 71.8 1.5 51 95-145 1-56 (59)
6 2lxm_B Charged multivesicular 97.7 2.1E-05 7.3E-10 50.3 3.0 35 111-145 1-37 (57)
7 2gd5_A Charged multivesicular 97.0 0.00014 4.7E-09 56.5 0.6 35 47-81 59-93 (179)
8 3frt_A Charged multivesicular 95.0 0.016 5.5E-07 46.4 3.4 144 4-155 30-179 (218)
9 3htu_B Vacuolar protein-sortin 91.6 0.066 2.3E-06 31.4 1.3 24 2-25 16-39 (39)
10 3uly_B Charged multivesicular 88.7 0.35 1.2E-05 31.7 3.1 19 127-145 7-25 (69)
11 3hho_A CO-chaperone protein HS 78.4 15 0.00052 27.5 8.9 54 6-59 117-170 (174)
12 1oxz_A ADP-ribosylation factor 72.6 17 0.00056 28.1 7.7 66 78-147 78-150 (186)
13 1fpo_A HSC20, chaperone protei 70.1 18 0.0006 27.2 7.3 51 6-56 113-163 (171)
14 3bvo_A CO-chaperone protein HS 69.6 21 0.00071 27.7 7.8 51 6-56 152-202 (207)
15 3uo3_A J-type CO-chaperone JAC 69.1 18 0.00061 27.5 7.2 50 6-55 122-171 (181)
16 1naf_A ADP-ribosylation factor 68.5 12 0.00042 28.1 6.0 67 78-147 62-134 (158)
17 2lf0_A Uncharacterized protein 58.8 25 0.00084 25.3 5.7 53 5-57 6-58 (123)
18 2lch_A Protein OR38; structura 55.9 45 0.0015 22.6 7.6 67 45-111 6-72 (113)
19 2lp4_A Chemotaxis protein CHEA 54.5 71 0.0024 24.5 10.0 67 46-112 8-74 (225)
20 3kyj_A CHEA3, putative histidi 53.7 60 0.0021 23.4 8.9 68 45-112 11-78 (144)
21 1wrd_A TOM1, target of MYB pro 50.8 43 0.0015 23.0 5.9 43 101-147 42-85 (103)
22 1o3x_A ADP-ribosylation factor 49.2 13 0.00045 27.3 3.1 44 102-148 82-126 (140)
23 1tqg_A Chemotaxis protein CHEA 44.6 66 0.0023 21.3 7.8 67 45-111 5-71 (105)
24 2ld6_A Chemotaxis protein CHEA 43.2 86 0.0029 22.2 7.7 67 46-112 5-71 (139)
25 1i5n_A Chemotaxis protein CHEA 40.2 77 0.0026 22.7 6.2 64 46-109 8-71 (146)
26 3gn4_A Myosin-VI; unconvention 37.4 1.2E+02 0.0042 22.3 11.4 17 128-144 121-137 (148)
27 1ez3_A Syntaxin-1A; three heli 34.6 64 0.0022 22.1 4.8 15 130-144 45-59 (127)
28 3m91_B Prokaryotic ubiquitin-l 33.6 23 0.00077 21.0 1.8 18 97-114 13-30 (44)
29 4ani_A Protein GRPE; chaperone 33.1 92 0.0031 24.3 5.9 16 7-22 64-79 (213)
30 2wjv_D Regulator of nonsense t 31.4 30 0.001 23.6 2.5 20 128-147 7-26 (97)
31 2kjg_A Archaeal protein SSO690 29.5 49 0.0017 22.6 3.2 35 87-121 11-45 (99)
32 1fio_A SSO1 protein; four heli 27.8 1.8E+02 0.0062 21.3 6.7 48 98-145 9-59 (196)
33 3ghg_A Fibrinogen alpha chain; 26.7 2.9E+02 0.01 24.7 8.4 64 6-70 54-124 (562)
34 4g1a_A AQ-C16C19 peptide; heli 26.5 28 0.00096 18.6 1.2 29 3-31 1-29 (32)
35 2nov_A DNA topoisomerase 4 sub 25.2 1.7E+02 0.0058 25.8 6.8 88 57-146 381-476 (496)
36 2lme_A Adhesin YADA; trimeric 23.6 93 0.0032 21.3 3.9 28 2-29 9-36 (105)
37 3cra_A Protein MAZG; tandem-re 22.9 2.9E+02 0.01 22.2 7.3 58 79-141 142-200 (265)
38 4glx_A DNA ligase; inhibitor, 22.0 2.1E+02 0.0071 25.7 6.8 41 104-144 8-49 (586)
39 3ghg_A Fibrinogen alpha chain; 22.0 4.3E+02 0.015 23.6 9.0 28 49-76 128-155 (562)
40 4abx_A DNA repair protein RECN 21.9 2.4E+02 0.0081 20.6 10.1 47 76-124 67-113 (175)
41 1b04_A Protein (DNA ligase); D 21.6 2.6E+02 0.0089 23.0 6.9 23 122-144 28-51 (318)
42 2cp9_A EF-TS, EF-TSMT, elongat 21.4 1.2E+02 0.0042 19.1 3.8 37 11-47 13-51 (64)
43 3oiq_B DNA polymerase alpha ca 21.4 62 0.0021 18.0 2.0 13 97-109 13-25 (36)
44 1s94_A S-syntaxin; three helix 21.3 1.6E+02 0.0054 21.6 5.1 47 98-144 43-90 (180)
45 4abm_A Charged multivesicular 20.8 1.8E+02 0.0062 18.9 7.4 65 5-74 9-77 (79)
No 1
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.66 E-value=4.2e-17 Score=128.06 Aligned_cols=140 Identities=19% Similarity=0.218 Sum_probs=106.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKD----RALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESL 81 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~----~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al 81 (172)
.|.+++.+|+..-......+|+++++|++. .|+.++|.||. ..++.....+|+.+.++++++.++..|..+|
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am 100 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 100 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777788899999999875 68888888876 5666778999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhh
Q 030731 82 KSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQ 149 (172)
Q Consensus 82 k~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~ 149 (172)
+.|+++|+.+|+.|++++|..+|++|.++.+++++|+++|+.++++ .|+++.++|.+++...+.++++
T Consensus 101 ~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~ 169 (179)
T 2gd5_A 101 QKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEIT 169 (179)
T ss_dssp CCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999864 3556667777777777776654
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=97.88 Aligned_cols=67 Identities=36% Similarity=0.292 Sum_probs=63.6
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIE 69 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie 69 (172)
.++|.|.+|++.|+.+|+.+...||+++ .++|.+|+.+||+||+||++|+++.++++||++++..||
T Consensus 13 ~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 13 DTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999999999 677899999999999999999999999999999999885
No 3
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.1e-14 Score=112.56 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=102.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGT 85 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~ 85 (172)
.|.+.+..|+..=......+|+++++|+...|+.+-|---...++..+++....+|..+.+++.++.++..|..+|+.++
T Consensus 25 ~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st 104 (218)
T 3frt_A 25 VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKST 104 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777888899999999998777666666666666678888999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhhhh
Q 030731 86 NAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSA-EDEEEILAEFDNLEAQVFAYIQ 149 (172)
Q Consensus 86 ~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~-~DedELe~EL~~L~~e~~~~~~ 149 (172)
.+|+.+|+.|++..|..+|++|..+.++++-+.+++...+++ .++++.++|-+.+...+.++++
T Consensus 105 ~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~ 169 (218)
T 3frt_A 105 EVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEIT 169 (218)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998899999887753 2333344445555555554443
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=94.65 Aligned_cols=55 Identities=24% Similarity=0.523 Sum_probs=50.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHhhh
Q 030731 93 SEINLEDVQKLMDDTEEAKAYQDEINAILGEKL---SAEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 93 ~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~---~~~DedELe~EL~~L~~e~~~~ 147 (172)
++|+||+|+++||+++|++++++||+++|++++ +++|++||++||++|+.+..+.
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~ 58 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 58 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999987 3689999999999999887544
No 5
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=6.1e-10 Score=71.78 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHHh
Q 030731 95 INLEDVQKLMDDTEEAKAYQDEINAILGEKLS-----AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 95 ~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-----~~DedELe~EL~~L~~e~~ 145 (172)
|+||+|++++|+|.+.++..+||+++|+++++ ++|++||++||++|..+..
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~ 56 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF 56 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence 57999999999999999999999999998764 4899999999999998754
No 6
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=50.27 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHh
Q 030731 111 KAYQDEINAILGEKLS--AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 111 ~e~~~EI~e~L~~~~~--~~DedELe~EL~~L~~e~~ 145 (172)
++..+||+++|+++++ ++|++||+.||++|+.+..
T Consensus 1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELL 37 (57)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3568999999999865 6999999999999998875
No 7
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.00 E-value=0.00014 Score=56.50 Aligned_cols=35 Identities=3% Similarity=-0.149 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030731 47 QEELLKQVDGWLINVEQQLADIELASKQKAVFESL 81 (172)
Q Consensus 47 ~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~al 81 (172)
+=+.+-+...+..+|..+..+|++.......+.+.
T Consensus 59 ~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~ 93 (179)
T 2gd5_A 59 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAV 93 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555554444333
No 8
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=94.99 E-value=0.016 Score=46.36 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=72.4
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 030731 4 GLPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELL---KQVDGWLINVEQQLADIELASKQKAVFES 80 (172)
Q Consensus 4 ~d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l---~k~~~~l~~Le~~~~~Ie~a~~n~~v~~a 80 (172)
+-+|.+..+++...|... ||+-=..+=|..|+.+.|.|+...+.+ .++.+....|++......-+.+=..+..+
T Consensus 30 ~~kle~eEkk~~~~IKka---akkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~ 106 (218)
T 3frt_A 30 IRDIQREEEKVKRSVKDA---AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV 106 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777666655 444444455788888888888866544 34455555666666666666677777888
Q ss_pred HHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 030731 81 LKSGTNAI--KAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQVFAYIQFELAHN 155 (172)
Q Consensus 81 lk~g~~~L--k~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~DedELe~EL~~L~~e~~~~~~~~~~~~ 155 (172)
|+..+..+ ..+.+.| ++++.=+..+ --..+-++++|....+ ..+++|.+.|.+....|+........|.+
T Consensus 107 M~~~n~~m~l~~i~~tM--~efekE~~k~---~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~~p~~ 179 (218)
T 3frt_A 107 MKAMQSLVKIPEIQATM--RELSKEMMKA---GIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK 179 (218)
T ss_dssp HHHHHHSTTSHHHHHHH--HHHHHHHHHH---SCC----------------CTTSTTTHHHHHHHTC-----------
T ss_pred HHHHHHcCCHHHHHHHH--HHHHHHHHHh---hhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhcCCCC
Confidence 88888777 4444333 3444444332 1112445666665544 34667778888888888876655555543
No 9
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=91.59 E-value=0.066 Score=31.45 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.4
Q ss_pred CccchHHhHHHHHHHHHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAA 25 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~a 25 (172)
.|||+|.+|+++++..++.+++.|
T Consensus 16 ~QRDkL~qyqkri~~~~~rE~eiA 39 (39)
T 3htu_B 16 QQRDKLRQYQKRIAQQLERERALA 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcC
Confidence 389999999999999999877643
No 10
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=88.72 E-value=0.35 Score=31.74 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 030731 127 AEDEEEILAEFDNLEAQVF 145 (172)
Q Consensus 127 ~~DedELe~EL~~L~~e~~ 145 (172)
++|++||+.||++|..++.
T Consensus 7 diDE~eL~aELdaL~~e~~ 25 (69)
T 3uly_B 7 ELDEDDLEAELDALGDELL 25 (69)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6999999999999998874
No 11
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=78.36 E-value=15 Score=27.55 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=45.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGWLI 59 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~l~ 59 (172)
.|..-...+..++..+......++..++...|...+++-+++.+..+.+.....
T Consensus 117 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~ 170 (174)
T 3hho_A 117 ALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVED 170 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667788889999999999999999999999999999998887766655433
No 12
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=72.56 E-value=17 Score=28.06 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcCCC-----HH-HHHHHHHHHHHHHHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhh
Q 030731 78 FESLKSGTNAIKAIQSEIN-----LE-DVQKLMDDTEEAKAYQ-DEINAILGEKLSAEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 78 ~~alk~g~~~Lk~~~~~~~-----id-~Ve~~~de~~e~~e~~-~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~ 147 (172)
++..+....+|..|...++ .. + .+++.++-+.+..+ --|..+++.. .|++++..|+=.+-.++...
T Consensus 78 Le~V~~nv~LL~EML~~~~pg~~~~~~d-~Ell~eL~~~Ck~~qp~i~~Li~e~---~ddee~L~elL~~ND~Ln~v 150 (186)
T 1oxz_A 78 IEEVNNNVKLLTEMVMSHSQGGAAAGSS-EDLMKELYQRCERMRPTLFRLASDT---EDNDEALAEILQANDNLTQV 150 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCSCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCcccc-HHHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHhhHHHHHH
Confidence 3344445555555544332 11 1 36777777666654 4566677643 36666777776666665433
No 13
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=70.13 E-value=18 Score=27.15 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=41.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDG 56 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~ 56 (172)
.|..-...+..++..+......++..++...|..++++-+++.+..+.+..
T Consensus 113 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~~ 163 (171)
T 1fpo_A 113 RLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888888888899999999999999999999988776655543
No 14
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=69.63 E-value=21 Score=27.69 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=41.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDG 56 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~ 56 (172)
.|..-...+..+++.+....++++..|+...|...+++-+++.+..+.+..
T Consensus 152 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~ 202 (207)
T 3bvo_A 152 AMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888888899999999999999998877665544
No 15
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=69.09 E-value=18 Score=27.48 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=42.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVD 55 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~ 55 (172)
.|..-...+..++..+.....+++..++...|..++++-+++.+..+.+-
T Consensus 122 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 122 GVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667888899999999999999999999999999999988776654
No 16
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=68.52 E-value=12 Score=28.08 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcCCCHHH--H---HHHHHHHHHHHHH-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhh
Q 030731 78 FESLKSGTNAIKAIQSEINLED--V---QKLMDDTEEAKAY-QDEINAILGEKLSAEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 78 ~~alk~g~~~Lk~~~~~~~id~--V---e~~~de~~e~~e~-~~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~ 147 (172)
++..+....+|..|...++..+ . .+++.++-+.+.. +--|..+++.. .|++++..|+=.+-.++...
T Consensus 62 Le~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~---~ddee~L~elL~~ND~Ln~v 134 (158)
T 1naf_A 62 IEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDT---EDNDEALAEILQANDNLTQV 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHhhHHHHHH
Confidence 3344445555555554432211 0 2566666666655 44566777643 36677777777666666544
No 17
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=58.81 E-value=25 Score=25.27 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=44.0
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKKAQEELLKQVDGW 57 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK~~ek~l~k~~~~ 57 (172)
+.+++.++.|..+++.|+.+--.+...|+......+.+.+--+++.+.++-+.
T Consensus 6 e~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999988888899888888887777777777665543
No 18
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=55.92 E-value=45 Score=22.64 Aligned_cols=67 Identities=10% Similarity=0.240 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 030731 45 KAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 111 (172)
Q Consensus 45 K~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~ 111 (172)
.+++..++.....+..|+..+..++..-.+...++++-.+...||-.-..+++..+..+.-.+++..
T Consensus 6 el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 6 EYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3556677788888889999999998887788888888888888888888888888888777666554
No 19
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=54.52 E-value=71 Score=24.54 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 030731 46 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 112 (172)
Q Consensus 46 ~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e 112 (172)
+++-.++.....+..++..+..++..-.+...++++-.+...||-.-.-++++.|.++.-.++...+
T Consensus 8 ~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~ 74 (225)
T 2lp4_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD 74 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777766777777777777777766665665555544444444433
No 20
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=53.69 E-value=60 Score=23.43 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 030731 45 KAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 112 (172)
Q Consensus 45 K~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e 112 (172)
.+++-.++.....+..++..+..++..-.+...++++-.+.-.||-.-.-++++.|.++.-.+++..+
T Consensus 11 ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~ 78 (144)
T 3kyj_A 11 EIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIG 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHH
Confidence 34566677778888888888888888777888888888888888877777776666665555555443
No 21
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=50.83 E-value=43 Score=22.97 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhh
Q 030731 101 QKLMDDTEEAKAYQ-DEINAILGEKLSAEDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 101 e~~~de~~e~~e~~-~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~ 147 (172)
.+++.++-+.+..+ .-|..+++. .+++++..++=.+-.++...
T Consensus 42 ~el~~eL~~~c~~~qp~i~~li~~----~~dee~l~~lL~~ND~L~~v 85 (103)
T 1wrd_A 42 LELLQELNRTCRAMQQRVLELIPQ----IANEQLTEELLIVNDNLNNV 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHhhHHHHHH
Confidence 35666666666554 456677763 25666777766665555433
No 22
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=49.23 E-value=13 Score=27.27 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhhh
Q 030731 102 KLMDDTEEAKAYQ-DEINAILGEKLSAEDEEEILAEFDNLEAQVFAYI 148 (172)
Q Consensus 102 ~~~de~~e~~e~~-~EI~e~L~~~~~~~DedELe~EL~~L~~e~~~~~ 148 (172)
+++.++-+.+..+ --|..+++.. .|++++..|+=.+-.++...+
T Consensus 82 Ell~eL~~~ck~~qp~i~~li~e~---~ddee~l~elL~~ND~ln~vl 126 (140)
T 1o3x_A 82 DLMKELYQRCERMRPTLFRLASDT---EDNDEALAEILQANDNLTQVI 126 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHhhHHHHHHH
Confidence 5667766666654 4566666642 355667777766666665443
No 23
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=44.60 E-value=66 Score=21.29 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 030731 45 KAQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAK 111 (172)
Q Consensus 45 K~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~ 111 (172)
.+++..++.....+..|+..+..++....+...+.++......||-.-..++...+..+.-.+++..
T Consensus 5 ~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 4556667777788888888888888777777788888888888888877888888877777766554
No 24
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=43.21 E-value=86 Score=22.19 Aligned_cols=67 Identities=12% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 030731 46 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKA 112 (172)
Q Consensus 46 ~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e 112 (172)
+++..++.....+..|+..+..++..-.+...++++..+.-.||-.-..++...+..+.-.+++..+
T Consensus 5 ll~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~ 71 (139)
T 2ld6_A 5 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILD 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888887766777788888888888888888888888777766665543
No 25
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=40.21 E-value=77 Score=22.70 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 030731 46 AQEELLKQVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEE 109 (172)
Q Consensus 46 ~~ek~l~k~~~~l~~Le~~~~~Ie~a~~n~~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e 109 (172)
+++-.++.....+..|+..+..++..-.+...++.+..+.-.||-.-..+++..+..+.-.+++
T Consensus 8 ll~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~ 71 (146)
T 1i5n_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMEN 71 (146)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHH
Confidence 4455566666667777777766665544555666666666666665555665555444433333
No 26
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=37.38 E-value=1.2e+02 Score=22.33 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHHHHH
Q 030731 128 EDEEEILAEFDNLEAQV 144 (172)
Q Consensus 128 ~DedELe~EL~~L~~e~ 144 (172)
++..+++.+.+.|....
T Consensus 121 i~~~~Id~~y~~lv~~~ 137 (148)
T 3gn4_A 121 MTREQIQKEYDALVKSS 137 (148)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 27
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.61 E-value=64 Score=22.13 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030731 130 EEEILAEFDNLEAQV 144 (172)
Q Consensus 130 edELe~EL~~L~~e~ 144 (172)
+..+..+|+.+..++
T Consensus 45 ~~~~~~~l~~l~~~i 59 (127)
T 1ez3_A 45 DEKTKEELEELMSDI 59 (127)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 445667777776665
No 28
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=33.55 E-value=23 Score=20.95 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030731 97 LEDVQKLMDDTEEAKAYQ 114 (172)
Q Consensus 97 id~Ve~~~de~~e~~e~~ 114 (172)
.+.+++++|+|.+.++..
T Consensus 13 ~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 13 TEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 467888888888777654
No 29
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.07 E-value=92 Score=24.33 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=6.8
Q ss_pred HHhHHHHHHHHHHHHH
Q 030731 7 VMIYSFQLDAVIEAEK 22 (172)
Q Consensus 7 L~~~~~~Le~~ie~~~ 22 (172)
|...+..|+.+++...
T Consensus 64 l~~~l~~l~~e~~el~ 79 (213)
T 4ani_A 64 AKAQIAELEAKLSEME 79 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 30
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=31.43 E-value=30 Score=23.63 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 030731 128 EDEEEILAEFDNLEAQVFAY 147 (172)
Q Consensus 128 ~DedELe~EL~~L~~e~~~~ 147 (172)
..|+|++.|++.|..|....
T Consensus 7 ~ed~eFdre~~kmm~eS~~s 26 (97)
T 2wjv_D 7 VEDEDFIQALDKMMLENLQQ 26 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999986544
No 31
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=29.53 E-value=49 Score=22.60 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030731 87 AIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAIL 121 (172)
Q Consensus 87 ~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L 121 (172)
-|++..+.++.+.|+.+++++++..-..+-|...+
T Consensus 11 eLrkfKgkvd~~~v~~IL~eiE~~~rksnni~tS~ 45 (99)
T 2kjg_A 11 KLRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSI 45 (99)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 37788889999999999999999988866665543
No 32
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=27.76 E-value=1.8e+02 Score=21.29 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHHh
Q 030731 98 EDVQKLMDDTEEAKAYQDEINAILGEKLSAEDE---EEILAEFDNLEAQVF 145 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~De---dELe~EL~~L~~e~~ 145 (172)
+.|+++-.+|..-.....++..+....++..+. .++..+++.+..++.
T Consensus 9 ~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~ 59 (196)
T 1fio_A 9 NKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQAT 59 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443332222 257777777766653
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.69 E-value=2.9e+02 Score=24.66 Aligned_cols=64 Identities=6% Similarity=0.036 Sum_probs=34.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 030731 6 PVMIYSFQLDAVIEAEKQAARDLIRQKRK------DRALLALKKKKAQEELLKQVDGWLI-NVEQQLADIEL 70 (172)
Q Consensus 6 ~L~~~~~~Le~~ie~~~~~aK~~~k~g~k------~~A~~~Lk~KK~~ek~l~k~~~~l~-~Le~~~~~Ie~ 70 (172)
.|.++...+..+|+.+++..-.+-+ +.+ ..-...||.+--..+..++..+++. .|+..+..|+.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsK-nsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQK-NNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777732 222 2223444444444445555555554 55555555543
No 34
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=26.53 E-value=28 Score=18.61 Aligned_cols=29 Identities=14% Similarity=-0.071 Sum_probs=18.4
Q ss_pred ccchHHhHHHHHHHHHHHHHHHHHHHHHh
Q 030731 3 YGLPVMIYSFQLDAVIEAEKQAARDLIRQ 31 (172)
Q Consensus 3 ~~d~L~~~~~~Le~~ie~~~~~aK~~~k~ 31 (172)
|+-.|.+++--|+++...|..++-.+-.+
T Consensus 1 qiaaleqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 1 QIAALEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp -CHHHHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45567888888888777777666554433
No 35
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=25.22 E-value=1.7e+02 Score=25.78 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 030731 57 WLINVEQQLADIELASKQKAVFESLK--------SGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAE 128 (172)
Q Consensus 57 ~l~~Le~~~~~Ie~a~~n~~v~~alk--------~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~ 128 (172)
.+.++..++.-|.++.+...+...|. ++..+|.--...++-.+++++..+..+......+...+|++.- .
T Consensus 381 a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~--~ 458 (496)
T 2nov_A 381 VISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER--T 458 (496)
T ss_dssp HHHSHHHHHHHHTTSSSHHHHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT--H
T ss_pred HHHHHhhHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH--H
Confidence 34566666666666555544433332 2333443334456777888999999999888888888988531 0
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 030731 129 DEEEILAEFDNLEAQVFA 146 (172)
Q Consensus 129 DedELe~EL~~L~~e~~~ 146 (172)
=.+=+-+||.++.....+
T Consensus 459 ~~~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 459 MYNLMKKELREVKKKFAT 476 (496)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 124456777777766554
No 36
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=23.59 E-value=93 Score=21.26 Aligned_cols=28 Identities=11% Similarity=-0.166 Sum_probs=23.5
Q ss_pred CccchHHhHHHHHHHHHHHHHHHHHHHH
Q 030731 2 SYGLPVMIYSFQLDAVIEAEKQAARDLI 29 (172)
Q Consensus 2 ~~~d~L~~~~~~Le~~ie~~~~~aK~~~ 29 (172)
.|.++..+++..|+.+|++...+++.-+
T Consensus 9 ~q~~~~~~~~~~l~~~i~~~~~~~~~g~ 36 (105)
T 2lme_A 9 PQFEKGAHKFRQLDNRLDKLDTRVDKGL 36 (105)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988887644
No 37
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=22.86 E-value=2.9e+02 Score=22.15 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 030731 79 ESLKSGTNAIKAIQS-EINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLE 141 (172)
Q Consensus 79 ~alk~g~~~Lk~~~~-~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~~~~~DedELe~EL~~L~ 141 (172)
-||-.+.++.++.-+ +++-+++..+++.+.|.+ .|+.+++... ..|.+.+++||..+.
T Consensus 142 PaL~~A~kiq~raa~vGfdw~~~~~v~~Kl~EEl---~El~eal~~~--~~~~~~ieeElGDlL 200 (265)
T 3cra_A 142 PALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEI---DEVMYEARQA--VVDQAKLEEEMGDLL 200 (265)
T ss_dssp CHHHHHHHHHHHHHTTTCSCSSHHHHHHHHHHHH---HHHHHHHHSS--SCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH---HHHHHHHHhc--cCCHHHHHHHHHHHH
Confidence 356666677776655 567677777777777663 4455555321 124455666666554
No 38
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=22.00 E-value=2.1e+02 Score=25.68 Aligned_cols=41 Identities=7% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHH
Q 030731 104 MDDTEEAKAYQDEINAILGEK-LSAEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 104 ~de~~e~~e~~~EI~e~L~~~-~~~~DedELe~EL~~L~~e~ 144 (172)
+.++.+++...+.-==.++.+ ++|..-|.|-.||.+|+.+-
T Consensus 8 i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~~lE~~~ 49 (586)
T 4glx_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKH 49 (586)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 344444444443333334454 45777788999999998774
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.97 E-value=4.3e+02 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 030731 49 ELLKQVDGWLINVEQQLADIELASKQKA 76 (172)
Q Consensus 49 k~l~k~~~~l~~Le~~~~~Ie~a~~n~~ 76 (172)
.++.++.....+|+.+...|.....++.
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 40
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.87 E-value=2.4e+02 Score=20.60 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030731 76 AVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEK 124 (172)
Q Consensus 76 ~v~~alk~g~~~Lk~~~~~~~id~Ve~~~de~~e~~e~~~EI~e~L~~~ 124 (172)
.++..+..+...|..+-. ++ ..+..+.+-+.+.....+++..-|+..
T Consensus 67 ~~~~~L~~a~~~L~~l~~-~d-~~l~~~~e~l~~a~~~l~d~~~~L~~y 113 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAK-YD-ETVMQLQNELRAALESVQAIAGELRDV 113 (175)
T ss_dssp CHHHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-hC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777766666532 33 246666667777766677777666553
No 41
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=21.60 E-value=2.6e+02 Score=22.98 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=16.7
Q ss_pred ccC-CCCCCHHHHHHHHHHHHHHH
Q 030731 122 GEK-LSAEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 122 ~~~-~~~~DedELe~EL~~L~~e~ 144 (172)
+.+ ++|..-|.|..||.+|+.+-
T Consensus 28 d~p~IsD~eYD~L~~eL~~lE~~~ 51 (318)
T 1b04_A 28 DRPSVPDAEYDRLMQELIAIEEQY 51 (318)
T ss_dssp CSCCSSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhC
Confidence 444 34667778999999998764
No 42
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=21.43 E-value=1.2e+02 Score=19.06 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHH
Q 030731 11 SFQLDAVIEAEKQAARDLIRQ--KRKDRALLALKKKKAQ 47 (172)
Q Consensus 11 ~~~Le~~ie~~~~~aK~~~k~--g~k~~A~~~Lk~KK~~ 47 (172)
++.|..+.---...||+.|.. |+...|..+||.|...
T Consensus 13 Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~ 51 (64)
T 2cp9_A 13 LMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQK 51 (64)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHH
Confidence 444545444444567776655 7899999999987653
No 43
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=21.40 E-value=62 Score=17.99 Aligned_cols=13 Identities=54% Similarity=0.813 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q 030731 97 LEDVQKLMDDTEE 109 (172)
Q Consensus 97 id~Ve~~~de~~e 109 (172)
.++|+++|+|++.
T Consensus 13 ~nDvq~Ll~DVEN 25 (36)
T 3oiq_B 13 ANDVQDLLDDVEN 25 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhhc
Confidence 4578888888754
No 44
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.25 E-value=1.6e+02 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHH
Q 030731 98 EDVQKLMDDTEEAKAYQDEINAILGEKLS-AEDEEEILAEFDNLEAQV 144 (172)
Q Consensus 98 d~Ve~~~de~~e~~e~~~EI~e~L~~~~~-~~DedELe~EL~~L~~e~ 144 (172)
+.|+.|-.+|.......++|...-...++ ..++..+..+|+.|..++
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i 90 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDI 90 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 45555555555555555555555433332 224556677777777665
No 45
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=20.78 E-value=1.8e+02 Score=18.87 Aligned_cols=65 Identities=17% Similarity=0.036 Sum_probs=40.9
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030731 5 LPVMIYSFQLDAVIEAEKQAARDLIRQKRKDRALLALKKKK-AQE---ELLKQVDGWLINVEQQLADIELASKQ 74 (172)
Q Consensus 5 d~L~~~~~~Le~~ie~~~~~aK~~~k~g~k~~A~~~Lk~KK-~~e---k~l~k~~~~l~~Le~~~~~Ie~a~~n 74 (172)
..|+..++.|+.+.......+-.- ...|+.++...| ..- +.--.+.+++.++...+++||.....
T Consensus 9 ~~Lr~~~d~L~kkq~~L~~~i~~e-----~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 9 QRLRDTEEMLSKKQEFLEKKIEQE-----LTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777778888777776666533 346666664422 222 22234577888888888888876543
Done!