BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030732
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NPI|A Chain A, Crystal Structure Of A Tetr Family Regulatory Protein
           (dip1788) From Corynebacterium Diphtheriae At 2.96 A
           Resolution
 pdb|3NPI|B Chain B, Crystal Structure Of A Tetr Family Regulatory Protein
           (dip1788) From Corynebacterium Diphtheriae At 2.96 A
           Resolution
          Length = 251

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 90  NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
           NE+ TH   A   TE                V D  L L   +GFS    E++AKK    
Sbjct: 3   NESSTHDSVADDPTEVST-----------DTVLDIALSLFSELGFSDAKLEAIAKKSGXS 51

Query: 150 ASSLNYSF-------LLKLESGLRFLQISA 172
              ++Y F       +  LE  +R L+ +A
Sbjct: 52  KRXIHYHFGDKRGLYICCLEEAVRRLRPTA 81


>pdb|3C5B|A Chain A, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
 pdb|3C5B|B Chain B, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
 pdb|3C5B|C Chain C, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
 pdb|3C5B|D Chain D, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
 pdb|3C5B|E Chain E, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
 pdb|3C5B|F Chain F, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
 pdb|3C5B|G Chain G, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
           Protein Gp7
          Length = 335

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 130 WRIGFSAKDWESVAKKDKIEASSL 153
           W IG S +DW S+++   I+ ++L
Sbjct: 224 WDIGLSVRDWRSISRICNIDVTTL 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,756,866
Number of Sequences: 62578
Number of extensions: 178645
Number of successful extensions: 447
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 2
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)