Query 030732
Match_columns 172
No_of_seqs 133 out of 1057
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1691 emp24/gp25L/p24 family 100.0 1.6E-31 3.4E-36 207.2 14.1 151 10-171 5-156 (210)
2 KOG1690 emp24/gp25L/p24 family 100.0 6.8E-28 1.5E-32 184.8 12.3 137 29-170 15-160 (215)
3 KOG1692 Putative cargo transpo 99.9 9.7E-27 2.1E-31 177.7 10.5 144 13-171 4-147 (201)
4 KOG1693 emp24/gp25L/p24 family 99.9 9.1E-24 2E-28 162.3 11.9 129 31-168 20-150 (209)
5 PF01105 EMP24_GP25L: emp24/gp 99.9 8.9E-24 1.9E-28 161.2 0.0 130 34-170 1-133 (183)
6 KOG3287 Membrane trafficking p 99.9 7.4E-21 1.6E-25 147.9 14.2 130 32-169 33-166 (236)
7 PF13473 Cupredoxin_1: Cupredo 91.7 0.89 1.9E-05 31.5 6.4 53 50-110 38-90 (104)
8 PF04151 PPC: Bacterial pre-pe 90.6 2 4.4E-05 27.4 6.8 60 46-112 4-68 (70)
9 PF13860 FlgD_ig: FlgD Ig-like 90.4 2.5 5.3E-05 28.1 7.3 54 55-113 12-76 (81)
10 smart00557 IG_FLMN Filamin-typ 89.4 4.9 0.00011 27.2 9.5 42 74-115 33-77 (93)
11 PF01835 A2M_N: MG2 domain; I 87.6 6.7 0.00015 26.5 8.8 62 53-115 13-86 (99)
12 PF11589 DUF3244: Domain of un 87.3 3 6.5E-05 29.1 6.3 57 54-117 36-96 (106)
13 PRK05842 flgD flagellar basal 84.7 5.4 0.00012 33.4 7.5 58 56-114 150-220 (295)
14 PF05738 Cna_B: Cna protein B- 84.5 2.5 5.5E-05 26.7 4.5 41 74-114 3-45 (70)
15 PRK06655 flgD flagellar basal 84.4 5.8 0.00013 31.8 7.4 55 56-115 114-179 (225)
16 PRK02710 plastocyanin; Provisi 84.3 13 0.00027 26.5 10.4 92 11-111 7-104 (119)
17 PRK12812 flgD flagellar basal 84.3 4.8 0.0001 33.1 6.9 55 55-114 128-193 (259)
18 PRK10378 inactive ferrous ion 83.8 8.9 0.00019 33.2 8.6 94 7-111 4-103 (375)
19 PRK12813 flgD flagellar basal 83.7 5.7 0.00012 31.9 7.0 56 54-115 110-174 (223)
20 PF13620 CarboxypepD_reg: Carb 82.7 1.8 4E-05 28.1 3.3 42 74-115 16-57 (82)
21 PF00630 Filamin: Filamin/ABP2 79.8 16 0.00034 24.5 8.4 42 74-115 43-91 (101)
22 PF09315 DUF1973: Domain of un 77.4 31 0.00067 26.6 9.0 63 45-115 19-87 (179)
23 PRK14081 triple tyrosine motif 76.7 52 0.0011 30.7 11.5 57 74-131 417-476 (667)
24 PF07495 Y_Y_Y: Y_Y_Y domain; 74.6 17 0.00038 22.4 7.0 55 74-130 9-65 (66)
25 PRK12633 flgD flagellar basal 74.3 13 0.00028 29.9 6.4 53 57-114 118-181 (230)
26 PF10528 PA14_2: GLEYA domain; 73.0 9.1 0.0002 27.3 4.7 48 40-90 55-102 (113)
27 PF15417 DUF4624: Domain of un 72.9 29 0.00062 25.0 7.0 77 43-132 38-122 (132)
28 PF05753 TRAP_beta: Translocon 71.8 44 0.00096 25.8 8.7 32 47-81 30-61 (181)
29 PRK12634 flgD flagellar basal 71.6 10 0.00023 30.3 5.2 41 74-114 123-174 (221)
30 PF13897 GOLD_2: Golgi-dynamic 71.6 6.2 0.00013 29.2 3.6 30 99-130 104-133 (136)
31 PRK09619 flgD flagellar basal 70.5 22 0.00047 28.4 6.8 55 55-115 110-172 (218)
32 COG2332 CcmE Cytochrome c-type 67.9 30 0.00066 26.1 6.6 72 11-86 10-85 (153)
33 PHA02932 hypothetical protein; 61.6 71 0.0015 25.2 7.8 62 34-105 42-111 (221)
34 PF14524 Wzt_C: Wzt C-terminal 57.0 63 0.0014 22.6 6.7 69 43-115 25-93 (142)
35 PRK13254 cytochrome c-type bio 53.1 19 0.00041 27.0 3.4 72 12-86 11-84 (148)
36 KOG0518 Actin-binding cytoskel 51.3 49 0.0011 32.4 6.4 44 74-117 884-930 (1113)
37 PF07680 DoxA: TQO small subun 50.2 52 0.0011 24.3 5.2 52 61-114 36-96 (133)
38 PF10648 Gmad2: Immunoglobulin 50.1 53 0.0011 22.2 5.0 36 54-90 11-46 (88)
39 PRK13165 cytochrome c-type bio 46.4 64 0.0014 24.6 5.3 13 74-86 79-91 (160)
40 PF05423 Mycobact_memb: Mycoba 45.9 1.2E+02 0.0026 22.4 7.7 89 9-106 3-96 (140)
41 PRK13150 cytochrome c-type bio 45.7 67 0.0015 24.4 5.3 15 74-88 79-93 (159)
42 PF12690 BsuPI: Intracellular 45.1 91 0.002 20.7 6.1 19 74-92 25-43 (82)
43 PF13715 DUF4480: Domain of un 43.8 88 0.0019 20.2 8.0 48 74-130 17-64 (88)
44 PRK13159 cytochrome c-type bio 42.9 74 0.0016 24.1 5.2 13 74-86 73-85 (155)
45 COG2869 NqrC Na+-transporting 41.3 5.7 0.00012 32.2 -1.1 31 11-45 11-41 (264)
46 COG3117 Uncharacterized protei 40.0 63 0.0014 25.3 4.5 20 6-25 2-21 (188)
47 PRK14081 triple tyrosine motif 39.0 1.4E+02 0.0029 28.1 7.2 42 76-117 226-267 (667)
48 COG5510 Predicted small secret 38.9 32 0.0007 20.4 2.1 16 8-23 2-17 (44)
49 PF03100 CcmE: CcmE; InterPro 38.9 47 0.001 24.1 3.6 53 30-85 28-83 (131)
50 PF14155 DUF4307: Domain of un 37.4 1.5E+02 0.0032 20.9 6.2 45 45-91 37-81 (112)
51 PF11857 DUF3377: Domain of un 37.2 16 0.00034 24.2 0.7 17 11-27 33-49 (74)
52 PF14054 DUF4249: Domain of un 36.7 2.2E+02 0.0048 22.8 8.4 32 32-64 14-50 (298)
53 PF07210 DUF1416: Protein of u 36.0 1.4E+02 0.003 20.3 7.0 60 50-114 3-62 (85)
54 PF10794 DUF2606: Protein of u 35.6 1.7E+02 0.0038 21.3 5.9 22 94-115 86-107 (131)
55 PF08234 Spindle_Spc25: Chromo 33.8 88 0.0019 20.2 3.9 49 102-154 3-51 (74)
56 PRK15301 hypothetical protein; 33.4 1.1E+02 0.0024 23.9 4.9 92 15-114 4-100 (186)
57 PF08138 Sex_peptide: Sex pept 32.1 15 0.00033 22.7 0.0 16 13-28 4-19 (56)
58 PF10670 DUF4198: Domain of un 32.0 2.2E+02 0.0048 21.5 6.6 20 94-113 191-210 (215)
59 PHA03376 BARF1; Provisional 31.5 2.7E+02 0.0058 22.2 11.6 16 101-116 95-110 (221)
60 PF13464 DUF4115: Domain of un 31.1 1.3E+02 0.0028 19.4 4.4 39 74-114 8-46 (77)
61 KOG0518 Actin-binding cytoskel 31.0 1.6E+02 0.0034 29.1 6.4 42 74-115 694-738 (1113)
62 COG2372 CopC Uncharacterized p 31.0 2.1E+02 0.0047 20.9 9.7 57 74-130 61-124 (127)
63 PF08842 Mfa2: Fimbrillin-A as 30.8 66 0.0014 25.4 3.6 42 74-115 30-77 (283)
64 COG3915 Uncharacterized protei 30.4 87 0.0019 23.4 3.7 36 9-48 4-39 (155)
65 PRK15036 hydroxyisourate hydro 28.0 2.5E+02 0.0054 20.7 7.7 43 74-116 44-93 (137)
66 TIGR03096 nitroso_cyanin nitro 27.9 2.5E+02 0.0054 20.7 8.3 74 34-110 26-116 (135)
67 PRK13211 N-acetylglucosamine-b 26.9 4.7E+02 0.01 23.5 9.9 58 74-131 342-405 (478)
68 PF07523 Big_3: Bacterial Ig-l 25.4 1.6E+02 0.0035 18.3 4.0 39 74-114 18-56 (67)
69 PF02083 Urotensin_II: Urotens 25.3 25 0.00053 15.0 0.1 8 42-49 2-9 (12)
70 PF04234 CopC: CopC domain; I 25.2 1.4E+02 0.0031 20.1 3.9 42 74-115 34-81 (97)
71 PF09394 Inhibitor_I42: Chagas 24.5 2.1E+02 0.0045 18.7 5.7 37 95-131 54-91 (92)
72 KOG3285 Spindle assembly check 23.6 55 0.0012 25.5 1.7 47 106-154 81-127 (203)
73 cd08356 Glo_EDI_BRP_like_17 Th 23.6 66 0.0014 21.9 2.1 14 74-87 96-109 (113)
74 PF00695 vMSA: Major surface a 23.1 27 0.0006 29.8 0.0 23 2-24 216-238 (364)
75 cd09011 Glo_EDI_BRP_like_23 Th 22.7 74 0.0016 21.6 2.2 14 74-87 101-114 (120)
76 PF02439 Adeno_E3_CR2: Adenovi 22.6 79 0.0017 18.1 1.8 15 13-27 14-28 (38)
77 PRK00753 psbL photosystem II r 22.2 78 0.0017 18.1 1.7 23 6-28 12-34 (39)
78 PF02419 PsbL: PsbL protein; 22.2 61 0.0013 18.4 1.3 23 6-28 10-32 (37)
79 PF10572 UPF0556: Uncharacteri 22.0 3.6E+02 0.0078 20.5 8.2 36 30-65 21-56 (158)
80 PF10731 Anophelin: Thrombin i 22.0 43 0.00093 21.3 0.7 12 13-24 4-15 (65)
81 PF13314 DUF4083: Domain of un 21.8 36 0.00077 21.4 0.3 23 141-166 34-56 (58)
82 PF07438 DUF1514: Protein of u 21.7 80 0.0017 20.3 1.9 14 10-23 5-18 (66)
83 PF12866 DUF3823: Protein of u 21.6 2.1E+02 0.0045 22.9 4.8 69 46-116 12-87 (222)
84 PF09116 gp45-slide_C: gp45 sl 21.3 2.7E+02 0.0058 19.9 4.8 41 76-116 25-73 (112)
85 PF06129 Chordopox_G3: Chordop 21.2 3.1E+02 0.0068 19.5 5.4 30 74-106 67-96 (109)
86 PF12276 DUF3617: Protein of u 21.2 60 0.0013 23.9 1.5 15 8-22 1-15 (162)
87 COG3175 COX11 Cytochrome oxida 20.9 2.3E+02 0.0051 22.1 4.7 51 75-130 97-153 (195)
88 COG4856 Uncharacterized protei 20.8 5.8E+02 0.013 22.4 7.6 38 74-114 71-112 (403)
89 PRK10299 PhoPQ regulatory prot 20.3 84 0.0018 18.9 1.7 16 10-25 5-20 (47)
90 COG4932 Predicted outer membra 20.3 9.1E+02 0.02 24.9 9.3 102 32-134 1316-1420(1531)
91 KOG3866 DNA-binding protein of 20.2 88 0.0019 26.7 2.4 24 6-29 1-25 (442)
92 PF07202 Tcp10_C: T-complex pr 20.1 92 0.002 24.1 2.4 14 75-88 163-176 (179)
93 TIGR02542 B_forsyth_147 Bacter 20.1 63 0.0014 23.5 1.3 13 104-116 115-127 (145)
94 PF02889 Sec63: Sec63 Brl doma 20.1 4.8E+02 0.01 21.1 7.0 56 74-129 247-313 (314)
No 1
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-31 Score=207.18 Aligned_cols=151 Identities=44% Similarity=0.747 Sum_probs=129.9
Q ss_pred hhhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe
Q 030732 10 RATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89 (172)
Q Consensus 10 ~~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~ 89 (172)
++..++++++++ ++.+.|+.|++|+++++|+.|++++|.++.|.|.+.++..+..+ .+++.|+||.|+++++
T Consensus 5 ~~~~~l~i~~~~-------~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~-~~~~~Vts~~G~~~~~ 76 (210)
T KOG1691|consen 5 CLSLLLLIFLLL-------LPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSH-KLSVKVTSPYGNNLHS 76 (210)
T ss_pred hHHHHHHHHHHH-------hhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccc-eEEEEEEcCCCceeeh
Confidence 344444444444 36789999999999999999999999999999999987522223 8999999999999999
Q ss_pred eeccceeeEEEEeccCceeEEeeeeCCCCC-CcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhcc
Q 030732 90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQ-KVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFL 168 (172)
Q Consensus 90 ~~~~~~g~f~fta~~~G~y~iCF~n~~~~~-~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I 168 (172)
+++..+|+|+||+.++|.|.+||.+..... ......|.|||++|++++||+++||+++++|+|.+ +|+|++.+++|
T Consensus 77 ~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~e---lrrLed~~~sI 153 (210)
T KOG1691|consen 77 KENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVE---LRRLEDLVESI 153 (210)
T ss_pred hhccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHH---HHHHHHHHHHH
Confidence 999999999999999999999999832221 23468999999999999999999999999999999 99999999999
Q ss_pred ccc
Q 030732 169 QIS 171 (172)
Q Consensus 169 ~~~ 171 (172)
+..
T Consensus 154 ~~e 156 (210)
T KOG1691|consen 154 HEE 156 (210)
T ss_pred HHH
Confidence 753
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.8e-28 Score=184.80 Aligned_cols=137 Identities=20% Similarity=0.296 Sum_probs=116.2
Q ss_pred cCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEe--eCC--CCCCCC--eeEEEEECCCCC--eEEeeeccceeeEEE
Q 030732 29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI--DEA--HPEHPP--TVSAKVTSPYGN--NLHHNENVTHGQFAF 100 (172)
Q Consensus 29 ~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~--~~~--~~~~~~--~v~v~V~dP~g~--~l~~~~~~~~g~f~f 100 (172)
+..++|++|++..+++|||+|++|++++|+|+|.+. ++. .++..| ++.+.|.||.++ .|+++.+.++|+|+|
T Consensus 15 ~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftF 94 (215)
T KOG1690|consen 15 ATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFTF 94 (215)
T ss_pred HhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceEE
Confidence 578899999999999999999999999999999997 221 122223 899999999888 899999999999999
Q ss_pred EeccCceeEEeeeeCCCCC-CcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhcccc
Q 030732 101 TTTEAGNYMACFWLGSNPQ-KVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQI 170 (172)
Q Consensus 101 ta~~~G~y~iCF~n~~~~~-~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I~~ 170 (172)
|+.++|+|+||+.++++.| ...+.+|++|+++|.++++|... ++..+.++.+ +++|++++.+|+-
T Consensus 95 ta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~~--ke~~k~l~~R---v~~L~~~~~~Irk 160 (215)
T KOG1690|consen 95 TALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQI--KETDKLLEGR---VRQLNSRLESIRK 160 (215)
T ss_pred EccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhhh--hhhhhhhHHH---HHHHHHHHHHHHH
Confidence 9999999999999876655 45789999999999998886544 4555677779 9999999998864
No 3
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.7e-27 Score=177.72 Aligned_cols=144 Identities=19% Similarity=0.327 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec
Q 030732 13 VLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN 92 (172)
Q Consensus 13 ~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~ 92 (172)
+.-+++|+|++. ..++++-+.+++++++||+|++.+|+.+.++|+|.++ +.. ++|+.|++|.|+++++.++
T Consensus 4 ~~~~~vll~~L~-----~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~g---g~~-~vd~~I~gP~~~~i~~~~~ 74 (201)
T KOG1692|consen 4 LASVIVLLGLLF-----ISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDG---GFL-GVDVEITGPDGKIIHKGKR 74 (201)
T ss_pred hhhHHHHHHHHH-----HHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecC---Ccc-ceeEEEECCCCchhhhccc
Confidence 344556666653 2367888999999999999999999999999999973 344 9999999999999999988
Q ss_pred cceeeEEEEeccCceeEEeeeeCCCCCCcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhccccc
Q 030732 93 VTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQIS 171 (172)
Q Consensus 93 ~~~g~f~fta~~~G~y~iCF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I~~~ 171 (172)
.+.|+|+|+++.+|.|++||+|.. ++..++.|.|+|++|.. .++++.+++++.++++.. +++|.+.|.+|+.+
T Consensus 75 ~ssgk~tF~a~~~G~Y~fCF~N~~--s~mtpk~V~F~ihvg~~-~~~~d~~~d~~~~~L~~~---I~eL~~al~~Vk~E 147 (201)
T KOG1692|consen 75 ESSGKYTFTAPKKGTYTFCFSNKM--STMTPKTVMFTIHVGHA-PQRDDLAKDAHQNKLEEM---IRELSEALTSVKHE 147 (201)
T ss_pred ccCceEEEEecCCceEEEEecCCC--CCCCceEEEEEEEEeec-cccchhcccccccHHHHH---HHHHHHHHHHhHHH
Confidence 899999999999999999999654 44578999999998864 455678999999999999 99999999998754
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.1e-24 Score=162.29 Aligned_cols=129 Identities=14% Similarity=0.296 Sum_probs=101.6
Q ss_pred eeEEEEEEEeCCCcceEeEEcCCCcE-EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeE
Q 030732 31 VTEAIWLQIPSSGTKCVSEEINSNVV-VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM 109 (172)
Q Consensus 31 ~~~al~f~l~~~~~~CF~e~v~~~~~-v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~ 109 (172)
.+..++|+||++.++|||+++++++- ....|+|.. ||+. +||+.|++|+|++|++..++..+.|.|++...|+|+
T Consensus 20 ~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~t---GG~f-DVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~ 95 (209)
T KOG1693|consen 20 EASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQT---GGHF-DVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYT 95 (209)
T ss_pred hcccEEEEcCCcchhheeeecccCCceEEEEEEEEe---CCce-eeEEEEECCCCCEEeeccccccccEEEEEecceEEE
Confidence 37899999999999999999999664 999999996 4566 999999999999999999999999999999999999
Q ss_pred EeeeeCCCCCCcccEEEEEEEEecccccchhhhhh-hccCCccccchHHHHHHHHhhhcc
Q 030732 110 ACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAK-KDKIEASSLNYSFLLKLESGLRFL 168 (172)
Q Consensus 110 iCF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak-~~~l~~le~~~~~l~~l~~~l~~I 168 (172)
+||+| .+++..++.|++++++|.+........+ +..++.+|.. +..|.++|+.|
T Consensus 96 fCFsN--~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena---~~~I~~~L~~I 150 (209)
T KOG1693|consen 96 FCFSN--EFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENA---IVEIHRALNKI 150 (209)
T ss_pred EEecC--ccccccceEeeehhhhccccccCccccccchHHHHHHHH---HHHHHHHHHHH
Confidence 99996 4455679999999999965443223211 2233344444 44555555444
No 5
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=99.87 E-value=8.9e-24 Score=161.22 Aligned_cols=130 Identities=27% Similarity=0.462 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEE--CCCCCeEEeeecc-ceeeEEEEeccCceeEE
Q 030732 34 AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVT--SPYGNNLHHNENV-THGQFAFTTTEAGNYMA 110 (172)
Q Consensus 34 al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~--dP~g~~l~~~~~~-~~g~f~fta~~~G~y~i 110 (172)
|++|.|+||+++||++++++++.+.++|++.++. +.. ++++.|+ +|+|+.++++... .+|+|+|++.++|+|++
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~-~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~i 77 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAY-DVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQI 77 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccc-eEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEE
Confidence 6899999999999999999999999999999643 133 8999999 5666888888655 45799999999999999
Q ss_pred eeeeCCCCCCcccEEEEEEEEecccccchhhhhhhccCCccccchHHHHHHHHhhhcccc
Q 030732 111 CFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLNYSFLLKLESGLRFLQI 170 (172)
Q Consensus 111 CF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~~~~l~~l~~~l~~I~~ 170 (172)
||+|..+.+. ..+.|+|++++|.++.++++.++++++++++.. |++|.+.++.|+.
T Consensus 78 Cf~n~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l~~~l~~i~~ 133 (183)
T PF01105_consen 78 CFDNSSSSFS-PSKRVSFDIDVGNENKDYKNVAKKEHLDPLEES---LEKLESNLKEIKD 133 (183)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEcCCCCcc-ccEEEEEEEEEeecccchhhhhhhhhhhhhHHH---HHHHHHHHHHHHH
Confidence 9998654432 138999999999887788899999999999999 9999999998875
No 6
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7.4e-21 Score=147.92 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=99.9
Q ss_pred eEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEe
Q 030732 32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC 111 (172)
Q Consensus 32 ~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iC 111 (172)
...++|.||||+++|||+.++.+..+..+|+|+++ +| .. +|++++.+|.|.++.+...+..|.+.+...++|.|++|
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~G-Dl-~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C 109 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AG-DL-DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC 109 (236)
T ss_pred ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CC-cc-ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence 34589999999999999999999999999999986 23 34 89999999999999999989999999999999999999
Q ss_pred eeeCCCCCCcccEEEEEEEE---ecccccchhhhhh-hccCCccccchHHHHHHHHhhhccc
Q 030732 112 FWLGSNPQKVADATLGLDWR---IGFSAKDWESVAK-KDKIEASSLNYSFLLKLESGLRFLQ 169 (172)
Q Consensus 112 F~n~~~~~~~~~~~V~fdi~---~G~~~~d~~~~ak-~~~l~~le~~~~~l~~l~~~l~~I~ 169 (172)
|+|+.+ ..+.+.|+|++- .|+....++.-.| ++..+.+..+ |+.+++.++.|+
T Consensus 110 fDNsFS--~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~k---l~di~~~i~~i~ 166 (236)
T KOG3287|consen 110 FDNSFS--TFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVK---LDDIEDSIGTIK 166 (236)
T ss_pred EcCccc--cccceEEEEEEEeccccchhccchhHhhhhhhhhhhccc---HHHHHHHHHHHH
Confidence 997544 456899999993 3443322222222 2222355666 666666655554
No 7
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=91.68 E-value=0.89 Score=31.50 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=25.2
Q ss_pred EcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEE
Q 030732 50 EINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMA 110 (172)
Q Consensus 50 ~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~i 110 (172)
.+++|..+++.+.-.+. . .-++.+.+ ...-..-.......+.|++..+|+|.+
T Consensus 38 ~v~~G~~v~l~~~N~~~-----~-~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 38 TVKAGQPVTLTFTNNDS-----R-PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYEF 90 (104)
T ss_dssp EEETTCEEEEEEEE-SS-----S--EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEEE
T ss_pred EEcCCCeEEEEEEECCC-----C-cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEEE
Confidence 35566666665543321 1 23444443 211111122346788999999999975
No 8
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=90.59 E-value=2 Score=27.44 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=39.7
Q ss_pred eEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec-----cceeeEEEEeccCceeEEee
Q 030732 46 CVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN-----VTHGQFAFTTTEAGNYMACF 112 (172)
Q Consensus 46 CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~-----~~~g~f~fta~~~G~y~iCF 112 (172)
.|.-+++++..+.+. +.+. .. +.++.+.+++|+.+.+... .......|++..+|.|.+=.
T Consensus 4 ~y~f~v~ag~~l~i~--l~~~----~~-d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 4 YYSFTVPAGGTLTID--LSGG----SG-DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEESTTEEEEEE--ECET----TS-SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEcCCCEEEEE--EcCC----CC-CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 455666776665543 3432 11 6889999999887766322 23456788899999998744
No 9
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=90.42 E-value=2.5 Score=28.06 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=33.9
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEec---------cCceeEEeee
Q 030732 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTT---------EAGNYMACFW 113 (172)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~---------~~G~y~iCF~ 113 (172)
....+.|.+.... . .+.+.|+|.+|++|.+.. ..+.|.+.|+-. .+|.|.+=+.
T Consensus 12 ~~~~~~~~l~~~a----~-~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~ 76 (81)
T PF13860_consen 12 TKGSIEYTLPEDA----D-NVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVT 76 (81)
T ss_dssp CEEEEEEEECSSC----E-EEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred EEEEEEEeCCCcc----c-EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEE
Confidence 4677777776532 2 799999999999997753 234566666543 2466665444
No 10
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=89.44 E-value=4.9 Score=27.18 Aligned_cols=42 Identities=26% Similarity=0.526 Sum_probs=30.4
Q ss_pred eeEEEEECCCCCeEEee-ecccee--eEEEEeccCceeEEeeeeC
Q 030732 74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLG 115 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~-~~~~~g--~f~fta~~~G~y~iCF~n~ 115 (172)
.+.+.|.+|+|+.+--+ .....| ..+|+....|.|.+.+.-+
T Consensus 33 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~ 77 (93)
T smart00557 33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFG 77 (93)
T ss_pred cEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEEC
Confidence 79999999999653222 222344 5678889999999998864
No 11
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=87.62 E-value=6.7 Score=26.51 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCcEEEEEEEEeeCC----CCCCCCeeEEEEECCCCCeEEeeec-c--ceeeEEEEe--cc---CceeEEeeeeC
Q 030732 53 SNVVVLADYYVIDEA----HPEHPPTVSAKVTSPYGNNLHHNEN-V--THGQFAFTT--TE---AGNYMACFWLG 115 (172)
Q Consensus 53 ~~~~v~~~y~v~~~~----~~~~~~~v~v~V~dP~g~~l~~~~~-~--~~g~f~fta--~~---~G~y~iCF~n~ 115 (172)
.|+.|.+.-.+.+.+ .+.+. .+.+.|.||+|+.+.+... . ..|.++++. .. .|.|++=+...
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~-~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANS-PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSE-EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccCC-ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 366666665554432 11122 8999999999999877765 2 345444443 22 48888888863
No 12
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=87.28 E-value=3 Score=29.14 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=36.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc--eeeEEEEe--ccCceeEEeeeeCCC
Q 030732 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT--HGQFAFTT--TEAGNYMACFWLGSN 117 (172)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~--~g~f~fta--~~~G~y~iCF~n~~~ 117 (172)
+..+.+.|... . +.+.++|+|.+|+++|++.... .....+.. ..+|.|.+=+.+.+.
T Consensus 36 ~~~l~I~F~~~------~-~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 36 GNNLSIEFESP------I-GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp TTEEEEEESS---------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCEEEEEEcCC------C-CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 45566666311 1 2899999999999999985433 22456655 458999999997543
No 13
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=84.68 E-value=5.4 Score=33.36 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=39.4
Q ss_pred EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc----ceeeEEEEecc---------CceeEEeeee
Q 030732 56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV----THGQFAFTTTE---------AGNYMACFWL 114 (172)
Q Consensus 56 ~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~----~~g~f~fta~~---------~G~y~iCF~n 114 (172)
.+.+.|.+..+...+.. .+.+.|+|.+|++|++-.-. ..|.+.|+-.. +|.|+|=...
T Consensus 150 ~~~~~~~l~~~~~~~a~-~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 150 KLSFSLFFDEKIDASKG-VPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred ceEEEEeccccccccCc-eEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 55666665432211223 79999999999999876432 35888887433 6999998864
No 14
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=84.53 E-value=2.5 Score=26.71 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=34.3
Q ss_pred eeEEEEECCCCCeEEe--eeccceeeEEEEeccCceeEEeeee
Q 030732 74 TVSAKVTSPYGNNLHH--NENVTHGQFAFTTTEAGNYMACFWL 114 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~--~~~~~~g~f~fta~~~G~y~iCF~n 114 (172)
++.|.+++.++..... ..-...|.+.|.--..|.|.+=...
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~ 45 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETK 45 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEE
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEE
Confidence 6888999988887765 4445789999999999999999886
No 15
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=84.36 E-value=5.8 Score=31.79 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=39.5
Q ss_pred EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEEec---------cCceeEEeeeeC
Q 030732 56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFTTT---------EAGNYMACFWLG 115 (172)
Q Consensus 56 ~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~--~~~g~f~fta~---------~~G~y~iCF~n~ 115 (172)
.+.+.|...+. .. .+.++|+|.+|++|++..- ...|.+.|+-. .+|.|++=+...
T Consensus 114 ~~~~~~~l~~~----a~-~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 114 TTPFGVELPSA----AD-NVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred ceEEEEEcCCC----Cc-EEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 45666665542 22 7999999999999976643 46788888543 379999988743
No 16
>PRK02710 plastocyanin; Provisional
Probab=84.28 E-value=13 Score=26.54 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhhhccccCeeEEEEEEEeCCC-cceEe---EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe
Q 030732 11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSG-TKCVS---EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN 86 (172)
Q Consensus 11 ~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~-~~CF~---e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~ 86 (172)
+.++..+++++...+......+...++.+.... .--|. -+++.|+.|. +...+. ..+ ++.+ .+..+ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~~~---~~H-~v~~--~~~~~-~ 77 (119)
T PRK02710 7 SIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNNKL---APH-NAVF--DGAKE-L 77 (119)
T ss_pred HHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEECCC---CCc-eEEe--cCCcc-c
Confidence 444444445555444444455666777776432 23554 2466677543 332221 122 4432 22211 1
Q ss_pred EEee-eccceeeEEEEeccCceeE-Ee
Q 030732 87 LHHN-ENVTHGQFAFTTTEAGNYM-AC 111 (172)
Q Consensus 87 l~~~-~~~~~g~f~fta~~~G~y~-iC 111 (172)
-.+. .......++++...+|.|. +|
T Consensus 78 ~~~~~~~~pg~t~~~tF~~~G~y~y~C 104 (119)
T PRK02710 78 SHKDLAFAPGESWEETFSEAGTYTYYC 104 (119)
T ss_pred cccccccCCCCEEEEEecCCEEEEEEc
Confidence 0111 1123335666666799995 46
No 17
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=84.27 E-value=4.8 Score=33.05 Aligned_cols=55 Identities=9% Similarity=0.202 Sum_probs=40.7
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CceeEEeeee
Q 030732 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWL 114 (172)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~---------~G~y~iCF~n 114 (172)
..+.+.|.+... .. .+.+.|+|.+|++|...+ ....|.+.|+-.. +|.|+|=+..
T Consensus 128 ~~~~~~~~l~~~----a~-~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 128 ELIALKLYFPED----SD-EGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred ceeEEEEecCCc----Cc-eEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 356667766542 22 799999999999997764 3457888887755 6999999874
No 18
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=83.82 E-value=8.9 Score=33.19 Aligned_cols=94 Identities=10% Similarity=0.259 Sum_probs=46.5
Q ss_pred ehhhhhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEE--cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCC
Q 030732 7 SLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEE--INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYG 84 (172)
Q Consensus 7 ~~~~~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~--v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g 84 (172)
.|||..+.+.++++...|..........+.+.+..+ .|--.. ++.|. ..|.|.+.+ .. ...|.+.+. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~---~~-~~Efe~~~~-~ 73 (375)
T PRK10378 4 NFRRNALQLALAALFSSAFMANAADIPQVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS---QK-ALEWEILKG-V 73 (375)
T ss_pred hhhhhHHHHHHHHhccCCcccccccCCceEEEEECC--ccccCceeeCCCC---EEEEEEeCC---CC-cceEEeecc-c
Confidence 467755555444444433211112223456666654 565444 45564 455655432 12 456666642 2
Q ss_pred CeEEeeeccc---eeeEEEEeccCceeEE-e
Q 030732 85 NNLHHNENVT---HGQFAFTTTEAGNYMA-C 111 (172)
Q Consensus 85 ~~l~~~~~~~---~g~f~fta~~~G~y~i-C 111 (172)
.++-++++.. .+.+.++. .+|.|.+ |
T Consensus 74 ~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C 103 (375)
T PRK10378 74 MVVEERENIAPGFSQKMTANL-QPGEYDMTC 103 (375)
T ss_pred cccccccccCCCCceEEEEec-CCceEEeec
Confidence 3333344432 34555444 7999998 9
No 19
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.71 E-value=5.7 Score=31.85 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=39.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEec---------cCceeEEeeeeC
Q 030732 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTT---------EAGNYMACFWLG 115 (172)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~---------~~G~y~iCF~n~ 115 (172)
+..+.+.|...+.. . .+.+.|+|.+|++|+..+- ..|.+.|+-. .+|.|+|=....
T Consensus 110 g~~~~~~~~l~~~a----~-~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~ 174 (223)
T PRK12813 110 GTPVTISPNPAADA----D-KAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESY 174 (223)
T ss_pred CceeEEEEeccCCC----c-eEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEE
Confidence 44667777766432 2 7999999999999977653 4455555543 269999998754
No 20
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=82.67 E-value=1.8 Score=28.06 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=29.7
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeC
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~ 115 (172)
+..+.+.+.++.....-.-..+|+|.|..-.+|.|.+=+...
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~ 57 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAP 57 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBT
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEEC
Confidence 788999988777766655557999999977779999998853
No 21
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=79.83 E-value=16 Score=24.55 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=29.1
Q ss_pred eeEEEEECCCCC----eE-Eeeecccee--eEEEEeccCceeEEeeeeC
Q 030732 74 TVSAKVTSPYGN----NL-HHNENVTHG--QFAFTTTEAGNYMACFWLG 115 (172)
Q Consensus 74 ~v~v~V~dP~g~----~l-~~~~~~~~g--~f~fta~~~G~y~iCF~n~ 115 (172)
.+.+.|.+|++. .+ .+-.....| ..+|++...|.|++...-.
T Consensus 43 ~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 43 EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 678999999986 32 222222344 5678889999999998853
No 22
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=77.38 E-value=31 Score=26.62 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=37.4
Q ss_pred ceEeEEc--CCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe-eecccee--eEEEE-eccCceeEEeeeeC
Q 030732 45 KCVSEEI--NSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH-NENVTHG--QFAFT-TTEAGNYMACFWLG 115 (172)
Q Consensus 45 ~CF~e~v--~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~-~~~~~~g--~f~ft-a~~~G~y~iCF~n~ 115 (172)
.+|+-+- .+++.+.+.|... . ...+.+++|+|+.+.. ..+.... ++... +.+.|..++.+.|.
T Consensus 19 gtv~ID~tvG~~T~f~v~w~~~-------~-~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~ 87 (179)
T PF09315_consen 19 GTVYIDSTVGNNTVFTVTWQNS-------S-PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNT 87 (179)
T ss_pred eEEEECCCCCCCeEEEEEECCC-------C-CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecC
Confidence 4555553 3456666655322 1 4677899999998765 2222223 33332 25679998888754
No 23
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=76.72 E-value=52 Score=30.74 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=43.1
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeCCCCCC---cccEEEEEEEE
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQK---VADATLGLDWR 131 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~~~~~~---~~~~~V~fdi~ 131 (172)
...+.|+. +|..+...+.....++.|++..+|.|++=.+..+..+. ...+.|.|++.
T Consensus 417 lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 417 RYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred EEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 56666665 67777777777789999999999999999887766542 24677777774
No 24
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=74.58 E-value=17 Score=22.36 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=30.7
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeCCCC--CCcccEEEEEEE
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNP--QKVADATLGLDW 130 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~~~~--~~~~~~~V~fdi 130 (172)
...+.+.+.+++-+....... .+.|+...+|.|++-+...+.. |.....++.|.|
T Consensus 9 ~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred EEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 344445555555443333222 8999999999999998875432 333336666655
No 25
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=74.28 E-value=13 Score=29.90 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=37.9
Q ss_pred EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CceeEEeeee
Q 030732 57 VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWL 114 (172)
Q Consensus 57 v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~---------~G~y~iCF~n 114 (172)
..+.|.+.+. .. .+.++|+|.+|++|+..+ ....|.+.|+-.. +|.|+|=+..
T Consensus 118 ~~~~~~l~~~----a~-~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 118 TPFGIDLQGD----AT-KVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred eeEEEecCCc----Cc-EEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 4455555432 22 799999999999998764 3467888887533 5899999875
No 26
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=72.99 E-value=9.1 Score=27.29 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=26.7
Q ss_pred eCCCcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee
Q 030732 40 PSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90 (172)
Q Consensus 40 ~~~~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~ 90 (172)
..+...++..++.+|.-.-++.-..+.+.+ - .++++|++|+|+.+.+.
T Consensus 55 ~~~~~~~~tv~L~aG~yyPiRi~~~N~~g~--~-~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 55 STGASKSVTVYLTAGTYYPIRIVYANGGGP--G-SFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SS-SEEEEEEEE-TT-BEEEEEEEEE-SS---E-EEEEEEEETT-S--B--
T ss_pred CCCCceEEEEEEECCcEEEEEEEEEcCCCc--e-EEEEEEECCCCcEEecC
Confidence 344567888888888765555544544322 2 89999999999987665
No 27
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=72.89 E-value=29 Score=25.00 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=46.0
Q ss_pred CcceEeEEcCC-CcEEEEEEEEeeCCCCCCCCeeEEEEECCC-CCeEEeeec---cceeeEEEEe---ccCceeEEeeee
Q 030732 43 GTKCVSEEINS-NVVVLADYYVIDEAHPEHPPTVSAKVTSPY-GNNLHHNEN---VTHGQFAFTT---TEAGNYMACFWL 114 (172)
Q Consensus 43 ~~~CF~e~v~~-~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~-g~~l~~~~~---~~~g~f~fta---~~~G~y~iCF~n 114 (172)
.-.|..+++.. +. .++|+.- |+ ..-+.|+|.+ ..++|+... .+...|+... +...+|-+||.-
T Consensus 38 rLFcVs~Die~L~a--Ev~f~mD----Ge---~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ftG 108 (132)
T PF15417_consen 38 RLFCVSEDIEALDA--EVYFQMD----GE---SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFTG 108 (132)
T ss_pred eEEEEecchheeee--EEEEEEc----Cc---cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEec
Confidence 45688888865 33 3444433 22 3556788755 467888743 3455666654 457899999993
Q ss_pred CCCCCCcccEEEEEEEEe
Q 030732 115 GSNPQKVADATLGLDWRI 132 (172)
Q Consensus 115 ~~~~~~~~~~~V~fdi~~ 132 (172)
++ ..+..|.+.|+.
T Consensus 109 --tk--InhAvv~vtFeS 122 (132)
T PF15417_consen 109 --TK--INHAVVKVTFES 122 (132)
T ss_pred --cE--eeeEEEEEEecc
Confidence 32 234555555543
No 28
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.80 E-value=44 Score=25.82 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=23.2
Q ss_pred EeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEEC
Q 030732 47 VSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTS 81 (172)
Q Consensus 47 F~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~d 81 (172)
.-+.+..|..+.++|.+.+.+. .. -.++++.|
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~--~~-A~dV~l~D 61 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGS--SA-AYDVKLTD 61 (181)
T ss_pred ccccccCCcEEEEEEEEEECCC--Ce-EEEEEEEC
Confidence 4445667899999999997542 22 67888888
No 29
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=71.61 E-value=10 Score=30.28 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=33.6
Q ss_pred eeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CceeEEeeee
Q 030732 74 TVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWL 114 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~---------~G~y~iCF~n 114 (172)
.+.++|+|.+|++++... ....|.+.|+-.. +|.|++-...
T Consensus 123 ~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 123 FVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred eEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 799999999999998764 3467888887754 5999999974
No 30
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=71.58 E-value=6.2 Score=29.20 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=22.6
Q ss_pred EEEeccCceeEEeeeeCCCCCCcccEEEEEEE
Q 030732 99 AFTTTEAGNYMACFWLGSNPQKVADATLGLDW 130 (172)
Q Consensus 99 ~fta~~~G~y~iCF~n~~~~~~~~~~~V~fdi 130 (172)
+++...+|.|-++|+|+.+.| ..|++...+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~--rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWF--RSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCcceeE--EeeEEEEEE
Confidence 566788999999999876665 456676655
No 31
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=70.47 E-value=22 Score=28.40 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=38.8
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc------CceeEEeeeeC
Q 030732 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE------AGNYMACFWLG 115 (172)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~--~~~~g~f~fta~~------~G~y~iCF~n~ 115 (172)
....+.|.+.++ .. .+.+.|+|.+|++ +... ....|.+.|+-.. +|.|++=+...
T Consensus 110 ~~~~~~~~L~~~----a~-~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~ 172 (218)
T PRK09619 110 DPVAGRLTLKHP----AP-TLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSG 172 (218)
T ss_pred CeeEEEEecCCc----Cc-EEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEe
Confidence 455677776543 22 7999999999997 4432 2367888888644 69999998754
No 32
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=30 Score=26.06 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhhhccccCeeEEE-EEEEeCCCcceEeEEcCCCcEEEEEEEEeeC--C-CCCCCCeeEEEEECCCCCe
Q 030732 11 ATVLPLILLLCLACYICVVPVTEAI-WLQIPSSGTKCVSEEINSNVVVLADYYVIDE--A-HPEHPPTVSAKVTSPYGNN 86 (172)
Q Consensus 11 ~~~~~~~~~~c~~~~~~~~~~~~al-~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~--~-~~~~~~~v~v~V~dP~g~~ 86 (172)
.+++.++..+|++.++.+-..-+.+ +|+.|+- --.-+...++.+.+-=-|..+ . +++.. .+.|.|+|-+..+
T Consensus 10 ~~il~~~a~l~~a~~l~Lyal~~ni~~fy~Pse---l~~~~~~~G~rlR~GGlV~~GSv~R~~~~~-~v~F~vtD~~~~v 85 (153)
T COG2332 10 WIILAGLAGLALAVGLVLYALRSNIDYFYTPSE---LLEGKVETGQRLRLGGLVEAGSVQRDPGSL-KVSFVVTDGNKSV 85 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCceEEECHHH---hccccccCCcEEEEeeeEeeceEEecCCCc-EEEEEEecCCceE
Confidence 6777777777777766666666665 5555532 111222223333322222211 0 13445 8999999877654
No 33
>PHA02932 hypothetical protein; Provisional
Probab=61.61 E-value=71 Score=25.20 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=34.8
Q ss_pred EEEEEEeCC-CcceEeEE--cCCCcEEEE-EEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccce-e---eEEEEeccC
Q 030732 34 AIWLQIPSS-GTKCVSEE--INSNVVVLA-DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTH-G---QFAFTTTEA 105 (172)
Q Consensus 34 al~f~l~~~-~~~CF~e~--v~~~~~v~~-~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~-g---~f~fta~~~ 105 (172)
+++..++.. ..+|+..+ +.+++.+.. .| | . .|++++++-.++.+...++... . -.-|+++.-
T Consensus 42 GLny~I~Eti~~EC~m~e~yi~~nstivlTGY--------G-l-~Ini~it~i~q~~VAaaeG~g~nNkL~illF~t~d~ 111 (221)
T PHA02932 42 GLNYDINETIIGECHMSESYIDRNSTIVLTGY--------G-L-EINITITDIDQRFVAAAEGVGKNNKLSILLFTTQDL 111 (221)
T ss_pred eeceecchhhhceeeecceeecccceEEEEcc--------c-E-EEEEEEEeecceeEeeeeccccCCEEEEEEEEcCcc
Confidence 344455432 36899884 455554433 33 1 2 6888888777777776665422 2 345666553
No 34
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=56.96 E-value=63 Score=22.60 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=33.9
Q ss_pred CcceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeC
Q 030732 43 GTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (172)
Q Consensus 43 ~~~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~ 115 (172)
.+.|=.-...+.-.+.+.|++...- .. +.+.+.|++.+|..++..... .....+....+|.|++.+.-+
T Consensus 25 g~~~~~~~~ge~~~i~i~~~~~~~i--~~-~~~~~~i~~~~g~~v~~~~t~-~~~~~~~~~~~g~~~~~~~i~ 93 (142)
T PF14524_consen 25 GEPTSSFESGEPIRIRIDYEVNEDI--DD-PVFGFAIRDSDGQRVFGTNTY-DSGFPIPLSEGGTYEVTFTIP 93 (142)
T ss_dssp EES-SSEETTSEEEEEEEEEESS-E--EE-EEEEEEEEETT--EEEEEEHH-HHT--EEE-TT-EEEEEEEEE
T ss_pred CCEeeEEeCCCEEEEEEEEEECCCC--Cc-cEEEEEEEcCCCCEEEEECcc-ccCccccccCCCEEEEEEEEc
Confidence 3445443333334455555553221 11 378999999999888875432 223444444477777777653
No 35
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=53.14 E-value=19 Score=27.01 Aligned_cols=72 Identities=17% Similarity=0.072 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCC-CC-CCCCeeEEEEECCCCCe
Q 030732 12 TVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEA-HP-EHPPTVSAKVTSPYGNN 86 (172)
Q Consensus 12 ~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~-~~-~~~~~v~v~V~dP~g~~ 86 (172)
+++++++++-++.++......+.+.+++.|.+-. -.....+..+.+.=.|..+. .. +.. .+.|.|+|.+..+
T Consensus 11 ~~~~~~~~~~~~~~L~~~a~~~~~~yf~tpse~~--~~~~~~g~~vrvgG~V~~gSi~~~~~~-~~~F~ltD~~~~i 84 (148)
T PRK13254 11 IILGALAALGLAVALVLYALRQNIVFFYTPSEVA--EGEAPAGRRFRLGGLVEKGSVQRGDGL-TVRFVVTDGNATV 84 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeeCHHHHh--cCCccCCCeEEEeEEEecCcEEeCCCC-EEEEEEEeCCeEE
Confidence 3334434444444444445566676777665421 11112233332222332211 01 223 7999999975443
No 36
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=51.34 E-value=49 Score=32.42 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=32.6
Q ss_pred eeEEEEECCCCCe---EEeeeccceeeEEEEeccCceeEEeeeeCCC
Q 030732 74 TVSAKVTSPYGNN---LHHNENVTHGQFAFTTTEAGNYMACFWLGSN 117 (172)
Q Consensus 74 ~v~v~V~dP~g~~---l~~~~~~~~g~f~fta~~~G~y~iCF~n~~~ 117 (172)
++...++||+|+. ....-....=+..|+..+.|.|++|......
T Consensus 884 d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~ 930 (1113)
T KOG0518|consen 884 DITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQ 930 (1113)
T ss_pred ceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCc
Confidence 7888899999975 2223223334778999999999999997544
No 37
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=50.15 E-value=52 Score=24.29 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=34.1
Q ss_pred EEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc---------eeeEEEEeccCceeEEeeee
Q 030732 61 YYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT---------HGQFAFTTTEAGNYMACFWL 114 (172)
Q Consensus 61 y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~---------~g~f~fta~~~G~y~iCF~n 114 (172)
|.+.+++.+++. -+.+.+.|++|++++++.... +.+|.-. -.+|.|.++.--
T Consensus 36 yr~~G~D~Ygsf-l~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv~~-~~~g~~gl~vpL 96 (133)
T PF07680_consen 36 YRVEGPDVYGSF-LIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYVAK-VKPGKHGLVVPL 96 (133)
T ss_pred EEcCCCccCCce-eeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEEcc-ccCCceeEEEEc
Confidence 444444555666 799999999999998875321 3444322 337888888763
No 38
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=50.07 E-value=53 Score=22.24 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=23.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee
Q 030732 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90 (172)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~ 90 (172)
++.|...++|.+....=+ ..+.+.|.|.+|+++.+.
T Consensus 11 g~~V~sp~~V~G~A~~FE-gtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 11 GDTVSSPVKVSGKARVFE-GTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred cCCcCCCEEEEEEEEEee-eEEEEEEEcCCCcEEEEe
Confidence 566666677665421001 179999999999998554
No 39
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=46.38 E-value=64 Score=24.57 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=10.1
Q ss_pred eeEEEEECCCCCe
Q 030732 74 TVSAKVTSPYGNN 86 (172)
Q Consensus 74 ~v~v~V~dP~g~~ 86 (172)
.+.|.|+|....+
T Consensus 79 ~v~F~vtD~~~~v 91 (160)
T PRK13165 79 KVSFTLYDAGGSV 91 (160)
T ss_pred EEEEEEEcCCeEE
Confidence 6899999876654
No 40
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=45.85 E-value=1.2e+02 Score=22.41 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=43.0
Q ss_pred hh-hhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCc----ceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCC
Q 030732 9 DR-ATVLPLILLLCLACYICVVPVTEAIWLQIPSSGT----KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPY 83 (172)
Q Consensus 9 ~~-~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~----~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~ 83 (172)
|| .++|.+++++++.++ ....++=...+... .=.-++......-++.|+|.++. +. ..++.-.|.+
T Consensus 3 kr~Wi~lv~v~v~~~~g~-----~V~rl~~~fg~~~~~~~~~~~~~~~~~~~pk~V~YEV~G~~--G~--~~~I~Y~D~~ 73 (140)
T PF05423_consen 3 KRAWIPLVIVAVVAVGGF-----AVARLRGVFGSDDRPSAADTPADDTAPFNPKTVTYEVTGPP--GS--TATISYLDAD 73 (140)
T ss_pred ceecHHHHHHhheeeeEE-----EEEEEecccCcccCccCCCCccccCCCCCCcEEEEEEEcCC--CC--eEEEEEEcCC
Confidence 44 777777777776541 22222211111111 11123344455678999998742 21 4666667877
Q ss_pred CCeEEeeeccceeeEEEEeccCc
Q 030732 84 GNNLHHNENVTHGQFAFTTTEAG 106 (172)
Q Consensus 84 g~~l~~~~~~~~g~f~fta~~~G 106 (172)
|+.-....-.-=-++.+++..++
T Consensus 74 ~~~~~~~~v~LPWs~tvt~~~~~ 96 (140)
T PF05423_consen 74 GQPQQVDNVSLPWSKTVTTTDPA 96 (140)
T ss_pred CceEeecCcCCCCEEEEEccCCc
Confidence 75522211112234455554443
No 41
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=45.66 E-value=67 Score=24.44 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=11.5
Q ss_pred eeEEEEECCCCCeEE
Q 030732 74 TVSAKVTSPYGNNLH 88 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~ 88 (172)
.+.|.|+|....+-.
T Consensus 79 ~v~F~vtD~~~~v~V 93 (159)
T PRK13150 79 KVNFSLYDAEGSVTV 93 (159)
T ss_pred EEEEEEEcCCcEEEE
Confidence 799999998776533
No 42
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.08 E-value=91 Score=20.72 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=13.1
Q ss_pred eeEEEEECCCCCeEEeeec
Q 030732 74 TVSAKVTSPYGNNLHHNEN 92 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~ 92 (172)
..||.|+|++|+.++....
T Consensus 25 ~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 25 RYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp -EEEEEE-TT--EEEETTT
T ss_pred EEEEEEECCCCCEEEEecC
Confidence 8999999999999998753
No 43
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=43.84 E-value=88 Score=20.23 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=31.3
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeCCCCCCcccEEEEEEE
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDW 130 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~~~~~~~~~~~V~fdi 130 (172)
.+.+.+.+.+ ..... ..+|.|.+. -..|.|.+-|+... ...+++.++.
T Consensus 17 ~a~V~~~~~~---~~~~T-d~~G~F~i~-~~~g~~~l~is~~G----y~~~~~~i~~ 64 (88)
T PF13715_consen 17 GATVYLKNTK---KGTVT-DENGRFSIK-LPEGDYTLKISYIG----YETKTITISV 64 (88)
T ss_pred CeEEEEeCCc---ceEEE-CCCeEEEEE-EcCCCeEEEEEEeC----EEEEEEEEEe
Confidence 6777777655 11222 258999999 45899999999532 3445555544
No 44
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=42.88 E-value=74 Score=24.12 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=10.1
Q ss_pred eeEEEEECCCCCe
Q 030732 74 TVSAKVTSPYGNN 86 (172)
Q Consensus 74 ~v~v~V~dP~g~~ 86 (172)
.+.|.|+|....+
T Consensus 73 ~v~F~vtD~~~~v 85 (155)
T PRK13159 73 KVSFTVIDKNAAT 85 (155)
T ss_pred EEEEEEEcCCcEE
Confidence 7899999876544
No 45
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=41.26 E-value=5.7 Score=32.20 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcc
Q 030732 11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTK 45 (172)
Q Consensus 11 ~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~ 45 (172)
.-.|+++++|||.| +...++.++-|.|-+++
T Consensus 11 ~~tllvvl~lsLvc----svivagaav~Lkp~Q~e 41 (264)
T COG2869 11 WGTLLVVLVLSLVC----SVIVAGAAVGLKPIQEE 41 (264)
T ss_pred ceeehhHHHHHHHH----HHHHhhhheeeChHHHH
Confidence 45688999999987 44455667777776543
No 46
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.95 E-value=63 Score=25.27 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=13.1
Q ss_pred eehhhhhHHHHHHHHHHhhh
Q 030732 6 ISLDRATVLPLILLLCLACY 25 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~ 25 (172)
|+.|...++++++.+|+.+.
T Consensus 2 ~~~Rw~~~ILll~a~~~~~w 21 (188)
T COG3117 2 MSRRWVYLILLLAALALSGW 21 (188)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 34455557778888888763
No 47
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=38.99 E-value=1.4e+02 Score=28.08 Aligned_cols=42 Identities=10% Similarity=0.133 Sum_probs=32.8
Q ss_pred EEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeeeCCC
Q 030732 76 SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSN 117 (172)
Q Consensus 76 ~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n~~~ 117 (172)
.|.+.+++|.....+.......|++++..+|.|++=....+.
T Consensus 226 KF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD~ 267 (667)
T PRK14081 226 KFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKDM 267 (667)
T ss_pred EEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEecc
Confidence 445667888877777777899999999999999986665443
No 48
>COG5510 Predicted small secreted protein [Function unknown]
Probab=38.92 E-value=32 Score=20.37 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHh
Q 030732 8 LDRATVLPLILLLCLA 23 (172)
Q Consensus 8 ~~~~~~~~~~~~~c~~ 23 (172)
|+|++++..++++|.+
T Consensus 2 mk~t~l~i~~vll~s~ 17 (44)
T COG5510 2 MKKTILLIALVLLAST 17 (44)
T ss_pred chHHHHHHHHHHHHHH
Confidence 5677777777777755
No 49
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=38.91 E-value=47 Score=24.10 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=20.7
Q ss_pred CeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeCC---CCCCCCeeEEEEECCCCC
Q 030732 30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEA---HPEHPPTVSAKVTSPYGN 85 (172)
Q Consensus 30 ~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~~---~~~~~~~v~v~V~dP~g~ 85 (172)
...++..+++.+.+-.=-- .+.+..+.+.=.|..+. .++.. .+.|.|+|.+..
T Consensus 28 ~~~~~~~yy~t~se~~~~~--~~~~~~vrv~G~V~~gSv~~~~~~~-~~~F~i~D~~~~ 83 (131)
T PF03100_consen 28 SFSDSAVYYLTPSELAAEP--QKVGRKVRVGGLVVEGSVEYDPDGN-TLTFTITDGGKE 83 (131)
T ss_dssp ----SSS-EE-TTTTTTTS--T-TTSEEEEEEEEECTTEEE-TTSS-EEEEEEE-SS-E
T ss_pred HhhccceEEcCHHHHhhcc--ccCCceEEEeeEEccCCEEEcCCCC-EEEEEEEECCcE
Confidence 3445555555554311000 12344444444554221 12233 899999998554
No 50
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=37.36 E-value=1.5e+02 Score=20.94 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=29.7
Q ss_pred ceEeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee
Q 030732 45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE 91 (172)
Q Consensus 45 ~CF~e~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~ 91 (172)
+=...++..++.+.+.|+|..+. +....+.+...|.++.++-.++
T Consensus 37 ~~~gf~vv~d~~v~v~f~Vtr~~--~~~a~C~VrA~~~d~aeVGrre 81 (112)
T PF14155_consen 37 EVIGFEVVDDSTVEVTFDVTRDP--GRPAVCIVRALDYDGAEVGRRE 81 (112)
T ss_pred EEEEEEECCCCEEEEEEEEEECC--CCCEEEEEEEEeCCCCEEEEEE
Confidence 33444556677889999998542 1112788888888887765554
No 51
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=37.19 E-value=16 Score=24.23 Aligned_cols=17 Identities=53% Similarity=1.017 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhhhcc
Q 030732 11 ATVLPLILLLCLACYIC 27 (172)
Q Consensus 11 ~~~~~~~~~~c~~~~~~ 27 (172)
+++++++|+||.+.+++
T Consensus 33 aVviPl~L~LCiLvl~y 49 (74)
T PF11857_consen 33 AVVIPLVLLLCILVLIY 49 (74)
T ss_pred EEeHHHHHHHHHHHHHH
Confidence 46788889999887543
No 52
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=36.67 E-value=2.2e+02 Score=22.83 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=18.0
Q ss_pred eEEEEE-EEeCCCcc----eEeEEcCCCcEEEEEEEEe
Q 030732 32 TEAIWL-QIPSSGTK----CVSEEINSNVVVLADYYVI 64 (172)
Q Consensus 32 ~~al~f-~l~~~~~~----CF~e~v~~~~~v~~~y~v~ 64 (172)
...+.+ .++.. ++ |+...-.....|.++....
T Consensus 14 ~~~i~~~~~~~~-~~lVV~~~i~~~~~~~~V~Ls~s~~ 50 (298)
T PF14054_consen 14 EKEIDIDDLDEE-PKLVVEGYITNPGDPQTVRLSRSVP 50 (298)
T ss_pred CcccccCcCCCC-CeEEEEEEEecCCCcEEEEEEEeec
Confidence 455666 45554 43 5555444556677776654
No 53
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=35.97 E-value=1.4e+02 Score=20.28 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=37.7
Q ss_pred EcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeee
Q 030732 50 EINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWL 114 (172)
Q Consensus 50 ~v~~~~~v~~~y~v~~~~~~~~~~~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n 114 (172)
++.+.+.++|... .++ .|- ++--+.+.|+.|+--.+---..+|+|.|-+ .+|..++=.-.
T Consensus 3 d~~ke~VItG~V~-~~G-~Pv--~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~ 62 (85)
T PF07210_consen 3 DVEKETVITGRVT-RDG-EPV--GGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALS 62 (85)
T ss_pred CccceEEEEEEEe-cCC-cCC--CCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEc
Confidence 3445566777554 221 111 255677889999874444445689999877 67888776653
No 54
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=35.56 E-value=1.7e+02 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.1
Q ss_pred ceeeEEEEeccCceeEEeeeeC
Q 030732 94 THGQFAFTTTEAGNYMACFWLG 115 (172)
Q Consensus 94 ~~g~f~fta~~~G~y~iCF~n~ 115 (172)
.+|++...+...|.|-+-|.|.
T Consensus 86 ~~Gki~Wk~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 86 EEGKIIWKNGRKGKYIVFLPNG 107 (131)
T ss_pred CCCcEEEecCCcceEEEEEcCC
Confidence 5899999999999999999863
No 55
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=33.85 E-value=88 Score=20.23 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=16.6
Q ss_pred eccCceeEEeeeeCCCCCCcccEEEEEEEEecccccchhhhhhhccCCccccc
Q 030732 102 TTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLN 154 (172)
Q Consensus 102 a~~~G~y~iCF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~ 154 (172)
+...+.-+|.|.+-+.. ...+.++|.+.++. ..|.-+.-...|+.++.-
T Consensus 3 ~~~~d~lkf~F~~id~~--d~~re~s~~l~i~~--~~Y~v~~~~P~l~~l~~l 51 (74)
T PF08234_consen 3 AIGGDQLKFVFTNIDPN--DPDREFSFTLDISS--DKYEVISCDPPLEDLDEL 51 (74)
T ss_dssp --STT-EEEEE-S-BTT--BSSS-EEEEEE-SS--S-EE----------THHH
T ss_pred ccCCceEEEEEeEcCCC--CCCceEEEEEEECC--CeEEEEEecCCcchHHHH
Confidence 33455577888864432 23455666666554 455444444444433333
No 56
>PRK15301 hypothetical protein; Provisional
Probab=33.44 E-value=1.1e+02 Score=23.88 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhccccCeeEEEEEEEeCCCcceEeEEcCCCcEEEEE--EEEeeCCCCCCCCeeEEEEECCCCCe---EEe
Q 030732 15 PLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLAD--YYVIDEAHPEHPPTVSAKVTSPYGNN---LHH 89 (172)
Q Consensus 15 ~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~--y~v~~~~~~~~~~~v~v~V~dP~g~~---l~~ 89 (172)
.++..+|.+|.+.++..+.+-.-.|.-++++-=|-.+.+.+..... |. ..+.. .+.++|.=|+-.. .++
T Consensus 4 ~~~~~~~~~~~l~~~~~~a~~~CqitlS~p~VDYG~m~r~d~~~t~~~~~-----~~~~R-~v~vsV~Cp~~~~maL~~q 77 (186)
T PRK15301 4 LGIAILCAFAALLLPSARADDDCQLTLSRPEVNYGQMRRDDIVGSQQNWN-----KMPER-EVNVSVSCPEPQQMALFVQ 77 (186)
T ss_pred HHHHHHHHHHhhccccccccCCCeEEcCCccccccccchhhhcccCcccc-----cccce-eEEEEEECCCCceEEEEEe
Confidence 3455556555333333333333444444554444444443333221 10 01122 6888887666543 333
Q ss_pred eeccceeeEEEEeccCceeEEeeee
Q 030732 90 NENVTHGQFAFTTTEAGNYMACFWL 114 (172)
Q Consensus 90 ~~~~~~g~f~fta~~~G~y~iCF~n 114 (172)
-.....|+|.|. +.|.|.+=.++
T Consensus 78 G~a~~~grf~fg--~~G~~~vklsd 100 (186)
T PRK15301 78 GAAGEKGRFLFG--NNGGLAVKVSQ 100 (186)
T ss_pred cccCCCCcEEEc--CCCcEEEEEhh
Confidence 344456666663 55667776664
No 57
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=32.10 E-value=15 Score=22.72 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccc
Q 030732 13 VLPLILLLCLACYICV 28 (172)
Q Consensus 13 ~~~~~~~~c~~~~~~~ 28 (172)
++++.+++|+++++++
T Consensus 4 p~~llllvlllGla~s 19 (56)
T PF08138_consen 4 PIFLLLLVLLLGLAQS 19 (56)
T ss_dssp ----------------
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4455566667664333
No 58
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=31.99 E-value=2.2e+02 Score=21.50 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=14.5
Q ss_pred ceeeEEEEeccCceeEEeee
Q 030732 94 THGQFAFTTTEAGNYMACFW 113 (172)
Q Consensus 94 ~~g~f~fta~~~G~y~iCF~ 113 (172)
.+|++.|+...+|.|-+=..
T Consensus 191 ~~G~~~~~~~~~G~wli~a~ 210 (215)
T PF10670_consen 191 ANGRATFTLPRPGLWLIRAS 210 (215)
T ss_pred CCCEEEEecCCCEEEEEEEE
Confidence 47888888888888866443
No 59
>PHA03376 BARF1; Provisional
Probab=31.45 E-value=2.7e+02 Score=22.19 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=12.0
Q ss_pred EeccCceeEEeeeeCC
Q 030732 101 TTTEAGNYMACFWLGS 116 (172)
Q Consensus 101 ta~~~G~y~iCF~n~~ 116 (172)
++-..|.|.-+|.-..
T Consensus 95 ~lSDdGtY~C~fQkge 110 (221)
T PHA03376 95 NISHDGNYLCRMKLGE 110 (221)
T ss_pred eecCCceEEEEEEcCC
Confidence 4456899999998644
No 60
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=31.11 E-value=1.3e+02 Score=19.37 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=26.8
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeee
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWL 114 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n 114 (172)
..=+.|+|.+|+.+++..-.+-..+.|.. ...+++=+-|
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~~~--~~~~~i~iGn 46 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTFEG--KEPFRIRIGN 46 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEEeC--CCCEEEEEeC
Confidence 57788999999999988655555566633 3346666554
No 61
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=31.03 E-value=1.6e+02 Score=29.11 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=32.2
Q ss_pred eeEEEEECCCCCe---EEeeeccceeeEEEEeccCceeEEeeeeC
Q 030732 74 TVSAKVTSPYGNN---LHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (172)
Q Consensus 74 ~v~v~V~dP~g~~---l~~~~~~~~g~f~fta~~~G~y~iCF~n~ 115 (172)
.+.+.|+||.|+. ...+....+-..+|+..+.|+|+|=.+-.
T Consensus 694 ~ltaeI~~PsGn~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~ 738 (1113)
T KOG0518|consen 694 VLTAEIVDPSGNPEPCLVRRLPNGHDGITFTPREVGEHKINVKVA 738 (1113)
T ss_pred eeEEEEECCCCCccceeeEecCCCceeEEECCCcCcceEEEEEEc
Confidence 5677999999986 33333334568899999999999998853
No 62
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=30.96 E-value=2.1e+02 Score=20.90 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=30.7
Q ss_pred eeEEEEECCCCCeEEeeec-cceee---EEEEe---ccCceeEEeeeeCCCCCCcccEEEEEEE
Q 030732 74 TVSAKVTSPYGNNLHHNEN-VTHGQ---FAFTT---TEAGNYMACFWLGSNPQKVADATLGLDW 130 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~-~~~g~---f~fta---~~~G~y~iCF~n~~~~~~~~~~~V~fdi 130 (172)
.-.+.+++|+|..+-.... ..+++ ..... -..|.|.+=..--+..-...+=.+.|++
T Consensus 61 fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV 124 (127)
T COG2372 61 FSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSISFSV 124 (127)
T ss_pred cceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEecCCcEeccEEEEEe
Confidence 5677899999987654422 12221 33333 2368888877654332112233455555
No 63
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=30.84 E-value=66 Score=25.45 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=27.2
Q ss_pred eeEEEEECCCCCeEEeeecc---ce-eeEEE--EeccCceeEEeeeeC
Q 030732 74 TVSAKVTSPYGNNLHHNENV---TH-GQFAF--TTTEAGNYMACFWLG 115 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~---~~-g~f~f--ta~~~G~y~iCF~n~ 115 (172)
.+++.|.|.+|+.+...... .. +.|++ ..-..|.|++++..+
T Consensus 30 ~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n 77 (283)
T PF08842_consen 30 RVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGN 77 (283)
T ss_dssp EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES
T ss_pred EEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEEC
Confidence 89999999999955544321 12 45665 334469999999974
No 64
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.42 E-value=87 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHhhhccccCeeEEEEEEEeCCCcceEe
Q 030732 9 DRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVS 48 (172)
Q Consensus 9 ~~~~~~~~~~~~c~~~~~~~~~~~~al~f~l~~~~~~CF~ 48 (172)
-|.+++..+-++|+.| ++...-+++.+..|.++-|.
T Consensus 4 ~r~ll~~fL~l~~~sl----aqa~~ilTiq~ad~~~~~ft 39 (155)
T COG3915 4 MRVLLLTFLALISSSL----AQAEPILTIQIADGPTVSFT 39 (155)
T ss_pred HHHHHHHHHHHHhhHH----hhcCceEEEEecCCCceeec
Confidence 3455555555566554 22233478887777777554
No 65
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=27.99 E-value=2.5e+02 Score=20.66 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=24.3
Q ss_pred eeEEEEECCCC---CeEEeeeccceeeEEEE----eccCceeEEeeeeCC
Q 030732 74 TVSAKVTSPYG---NNLHHNENVTHGQFAFT----TTEAGNYMACFWLGS 116 (172)
Q Consensus 74 ~v~v~V~dP~g---~~l~~~~~~~~g~f~ft----a~~~G~y~iCF~n~~ 116 (172)
+|.+++...++ +.+.+..-...|++.+. ...+|+|++=|....
T Consensus 44 gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 44 DVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred CCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 55555554332 23433333456777652 235799999998654
No 66
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=27.95 E-value=2.5e+02 Score=20.72 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=39.3
Q ss_pred EEEEEEeCCCcceEeEEcCC---CcEEEEEEEEeeCC----CCCCCCeeEEEEECCCCCe---EEee-------ecccee
Q 030732 34 AIWLQIPSSGTKCVSEEINS---NVVVLADYYVIDEA----HPEHPPTVSAKVTSPYGNN---LHHN-------ENVTHG 96 (172)
Q Consensus 34 al~f~l~~~~~~CF~e~v~~---~~~v~~~y~v~~~~----~~~~~~~v~v~V~dP~g~~---l~~~-------~~~~~g 96 (172)
.+...|.+..+.----.++. .+.+.++|++.... .|+ .|.+++.+.++-. .... .-....
T Consensus 26 ~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD---~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~ 102 (135)
T TIGR03096 26 SFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGT---PVKVTVENKSPISEGFSIDAYGISEVIKAGETK 102 (135)
T ss_pred eeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCC---EEEEEEEeCCCCccceEECCCCcceEECCCCeE
Confidence 45555555454431111222 33447778776321 222 7877777765421 1111 112345
Q ss_pred eEEEEeccCceeEE
Q 030732 97 QFAFTTTEAGNYMA 110 (172)
Q Consensus 97 ~f~fta~~~G~y~i 110 (172)
.++|++..+|.|.+
T Consensus 103 TitF~adKpG~Y~y 116 (135)
T TIGR03096 103 TISFKADKAGAFTI 116 (135)
T ss_pred EEEEECCCCEEEEE
Confidence 68899999999973
No 67
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=26.93 E-value=4.7e+02 Score=23.53 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCeEEeeec-cceeeEEEEec----cCceeEEeeeeCCCCCC-cccEEEEEEEE
Q 030732 74 TVSAKVTSPYGNNLHHNEN-VTHGQFAFTTT----EAGNYMACFWLGSNPQK-VADATLGLDWR 131 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~-~~~g~f~fta~----~~G~y~iCF~n~~~~~~-~~~~~V~fdi~ 131 (172)
.|..+|+|.+|+.+..... ...+...|+.. +.|.|++=....++.-. ....++.|.++
T Consensus 342 ~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~dG~~~~q~~~~~~v~ 405 (478)
T PRK13211 342 NVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKDGELIKQQTLDFMLE 405 (478)
T ss_pred EEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeCCCceeeeeeEEEEEE
Confidence 7888999999988766532 23344455543 57999999986543311 12455566553
No 68
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=25.39 E-value=1.6e+02 Score=18.27 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=23.6
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCceeEEeeee
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWL 114 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y~iCF~n 114 (172)
+..+.+.+.+|+.+-..+..-.| .|.+..+|.|.+=++-
T Consensus 18 ~~~v~at~~dG~~~~~~~~~vs~--~~d~~~~G~y~Vt~~y 56 (67)
T PF07523_consen 18 GLFVTATYSDGTSLPLSDVTVSG--TVDTSKAGTYTVTYTY 56 (67)
T ss_dssp CHEEEEEETTS-ES-GCCSEEES-----TTS-CCEEEEEEE
T ss_pred CCEEEEEEcCCCEeceeeeEEEe--eeecCCCceEEEEEEE
Confidence 67788888888874333333344 7788889999998884
No 69
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=25.32 E-value=25 Score=15.04 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=5.4
Q ss_pred CCcceEeE
Q 030732 42 SGTKCVSE 49 (172)
Q Consensus 42 ~~~~CF~e 49 (172)
+..+||+.
T Consensus 2 ~~~~CFWK 9 (12)
T PF02083_consen 2 GKSECFWK 9 (12)
T ss_pred Cccchhhh
Confidence 45678874
No 70
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=25.17 E-value=1.4e+02 Score=20.13 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=24.0
Q ss_pred eeEEEEECCCCCeEEeeecc---ceeeEEEEecc---CceeEEeeeeC
Q 030732 74 TVSAKVTSPYGNNLHHNENV---THGQFAFTTTE---AGNYMACFWLG 115 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~---~~g~f~fta~~---~G~y~iCF~n~ 115 (172)
.-.++|.||+|+.+-..... ....+...... +|.|.+=...-
T Consensus 34 ~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvv 81 (97)
T PF04234_consen 34 FSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVV 81 (97)
T ss_dssp C-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEE
T ss_pred ccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEE
Confidence 56678888888654322111 12355555544 68998887754
No 71
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=24.53 E-value=2.1e+02 Score=18.66 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=23.7
Q ss_pred eeeEEEEeccCceeEEeeeeCCCCCCcc-cEEEEEEEE
Q 030732 95 HGQFAFTTTEAGNYMACFWLGSNPQKVA-DATLGLDWR 131 (172)
Q Consensus 95 ~g~f~fta~~~G~y~iCF~n~~~~~~~~-~~~V~fdi~ 131 (172)
.-.|.|.+..+|+.++=|.....+.... ..++.+++.
T Consensus 54 ~~~f~f~a~~~G~~~i~~~y~r~we~~~~~~~~~~~V~ 91 (92)
T PF09394_consen 54 TRTFTFKALKPGTTTIKFEYRRPWEKGSPIKTFTITVT 91 (92)
T ss_dssp EEEEEEEESSSEEEEEEEEEEBTTTBSTTSEEEEEEEE
T ss_pred EEEEEEEEecCeeEEEEEEEECcCCCCCccEEEEEEEE
Confidence 3468889999999999887543321112 356666654
No 72
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.65 E-value=55 Score=25.54 Aligned_cols=47 Identities=4% Similarity=-0.043 Sum_probs=31.6
Q ss_pred ceeEEeeeeCCCCCCcccEEEEEEEEecccccchhhhhhhccCCccccc
Q 030732 106 GNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEASSLN 154 (172)
Q Consensus 106 G~y~iCF~n~~~~~~~~~~~V~fdi~~G~~~~d~~~~ak~~~l~~le~~ 154 (172)
-..-+|+.+.. .+..--++.|+++....+.|..++.....++.++.+
T Consensus 81 qklvlvI~~~~--tgEvlErWqFnie~~~~~~d~~na~~~k~~~~iq~E 127 (203)
T KOG3285|consen 81 QKLVLVITSKH--TGEVLERWQFNIETENTASDGQNATRVKDLKRIQNE 127 (203)
T ss_pred ceEEEEEEecc--cccchhheeeeeeeeccccCcccccchhHHHHHHHH
Confidence 34667888543 344566889999887777766666655666667666
No 73
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.60 E-value=66 Score=21.88 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=11.7
Q ss_pred eeEEEEECCCCCeE
Q 030732 74 TVSAKVTSPYGNNL 87 (172)
Q Consensus 74 ~v~v~V~dP~g~~l 87 (172)
.-.+.++||+|+.+
T Consensus 96 ~r~f~~~DPdGn~~ 109 (113)
T cd08356 96 GREFFLHDPSGVLW 109 (113)
T ss_pred cEEEEEECCCccEE
Confidence 36789999999876
No 74
>PF00695 vMSA: Major surface antigen from hepadnavirus; InterPro: IPR000349 This family contains the major surface antigens of the hepatitus viruses (Hepadnaviridae). The protein is most likely required for an early step of the life cycle involving entry or uncoating of virus particles.; GO: 0016032 viral reproduction; PDB: 1KCR_P 1WZ4_A 2EH8_P 1KC5_P.
Probab=23.12 E-value=27 Score=29.80 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=0.0
Q ss_pred cceeeehhhhhHHHHHHHHHHhh
Q 030732 2 GETLISLDRATVLPLILLLCLAC 24 (172)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~c~~~ 24 (172)
|-.-|-+||.|+.+.+||+|+-+
T Consensus 216 g~~w~~lr~fiifl~ill~~~~~ 238 (364)
T PF00695_consen 216 GYRWMCLRRFIIFLFILLLCLIF 238 (364)
T ss_dssp -----------------------
T ss_pred CchhhhhhhHHHHHHHHHHHHHH
Confidence 33457899999999999999864
No 75
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.68 E-value=74 Score=21.58 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=11.6
Q ss_pred eeEEEEECCCCCeE
Q 030732 74 TVSAKVTSPYGNNL 87 (172)
Q Consensus 74 ~v~v~V~dP~g~~l 87 (172)
.-.+.++||+|+.+
T Consensus 101 ~r~~~~~DPdGn~i 114 (120)
T cd09011 101 QRVVRFYDPDKHII 114 (120)
T ss_pred cEEEEEECCCCCEE
Confidence 35789999999976
No 76
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=22.61 E-value=79 Score=18.15 Aligned_cols=15 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhcc
Q 030732 13 VLPLILLLCLACYIC 27 (172)
Q Consensus 13 ~~~~~~~~c~~~~~~ 27 (172)
+-.+++.+|.++|+|
T Consensus 14 vg~~iiii~~~~YaC 28 (38)
T PF02439_consen 14 VGMAIIIICMFYYAC 28 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566777777766
No 77
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.25 E-value=78 Score=18.10 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=15.7
Q ss_pred eehhhhhHHHHHHHHHHhhhccc
Q 030732 6 ISLDRATVLPLILLLCLACYICV 28 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~~ 28 (172)
..++|+-+-.+.++++..+.+++
T Consensus 12 VELNRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 12 VELNRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred ceechhhHHHHHHHHHHHHHHHH
Confidence 46788777777777776654443
No 78
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=22.21 E-value=61 Score=18.42 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=13.6
Q ss_pred eehhhhhHHHHHHHHHHhhhccc
Q 030732 6 ISLDRATVLPLILLLCLACYICV 28 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~~ 28 (172)
..++|+-+-.+++++|..+.+++
T Consensus 10 VELNRTSLY~GLllifvl~vLFs 32 (37)
T PF02419_consen 10 VELNRTSLYWGLLLIFVLAVLFS 32 (37)
T ss_dssp BE--CCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHhh
Confidence 46788777777777776654443
No 79
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=22.05 E-value=3.6e+02 Score=20.49 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=21.5
Q ss_pred CeeEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEee
Q 030732 30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVID 65 (172)
Q Consensus 30 ~~~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~ 65 (172)
.......|++.||..-=-.+....+-.-..+|.+.+
T Consensus 21 ~e~~t~eFdvkP~G~~~t~~~~~~~~~C~FTYAaqG 56 (158)
T PF10572_consen 21 SEPTTKEFDVKPGGVVHTFSESLGKYKCTFTYAAQG 56 (158)
T ss_pred ccccceeEEecCCCEEEEeEEecCceEEEEEEEecC
Confidence 344567899999966333333333455667777664
No 80
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.99 E-value=43 Score=21.30 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhh
Q 030732 13 VLPLILLLCLAC 24 (172)
Q Consensus 13 ~~~~~~~~c~~~ 24 (172)
-|.++.+||++.
T Consensus 4 Kl~vialLC~aL 15 (65)
T PF10731_consen 4 KLIVIALLCVAL 15 (65)
T ss_pred hhhHHHHHHHHH
Confidence 356777888773
No 81
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=21.81 E-value=36 Score=21.44 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=18.1
Q ss_pred hhhhhccCCccccchHHHHHHHHhhh
Q 030732 141 SVAKKDKIEASSLNYSFLLKLESGLR 166 (172)
Q Consensus 141 ~~ak~~~l~~le~~~~~l~~l~~~l~ 166 (172)
+.+|+.+..++|++ |.++.+.|+
T Consensus 34 s~~kkq~~~~~eqK---LDrIIeLLE 56 (58)
T PF13314_consen 34 SNAKKQDVDSMEQK---LDRIIELLE 56 (58)
T ss_pred ccccccchhHHHHH---HHHHHHHHc
Confidence 34577788889999 999888765
No 82
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=21.69 E-value=80 Score=20.32 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHh
Q 030732 10 RATVLPLILLLCLA 23 (172)
Q Consensus 10 ~~~~~~~~~~~c~~ 23 (172)
.+++|++++|.|+.
T Consensus 5 iSIvLai~lLI~l~ 18 (66)
T PF07438_consen 5 ISIVLAIALLISLS 18 (66)
T ss_pred HHHHHHHHHHHHHh
Confidence 36677777777764
No 83
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=21.60 E-value=2.1e+02 Score=22.85 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=31.2
Q ss_pred eEeEEcCC-CcEEEEEEEEeeCCCCC----CCCeeEEEEECCC-CCe-EEeeeccceeeEEEEeccCceeEEeeeeCC
Q 030732 46 CVSEEINS-NVVVLADYYVIDEAHPE----HPPTVSAKVTSPY-GNN-LHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (172)
Q Consensus 46 CF~e~v~~-~~~v~~~y~v~~~~~~~----~~~~v~v~V~dP~-g~~-l~~~~~~~~g~f~fta~~~G~y~iCF~n~~ 116 (172)
|-.++-.+ +..+.|.. .+...|. ...++.+.+..+. ++. -..-.-.+.|.|.=+.--+|+|++=+.+.+
T Consensus 12 C~~DNYD~P~s~l~G~i--iD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~ 87 (222)
T PF12866_consen 12 CEKDNYDEPDSTLTGRI--IDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGN 87 (222)
T ss_dssp ----------EEEEEEE--EECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTS
T ss_pred cCccCCcCCCceEEEEE--EEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCC
Confidence 55666555 55788865 2211000 0016777777653 211 001112357888878888999999996544
No 84
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=21.34 E-value=2.7e+02 Score=19.88 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=23.4
Q ss_pred EEEEECCCCCeEEee-----eccceeeEEEEecc-Cce--eEEeeeeCC
Q 030732 76 SAKVTSPYGNNLHHN-----ENVTHGQFAFTTTE-AGN--YMACFWLGS 116 (172)
Q Consensus 76 ~v~V~dP~g~~l~~~-----~~~~~g~f~fta~~-~G~--y~iCF~n~~ 116 (172)
++.+...+|+++... .+..+..|++...+ +|+ +.+||.-.|
T Consensus 25 dl~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eN 73 (112)
T PF09116_consen 25 DLCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMEN 73 (112)
T ss_dssp EEEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG
T ss_pred eEEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEece
Confidence 445555566765554 23356677777644 355 888888654
No 85
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=21.23 E-value=3.1e+02 Score=19.49 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=15.5
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCc
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAG 106 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G 106 (172)
.+.++..+-.|.+..... .+++.|.....|
T Consensus 67 ~v~l~Yds~~~~Vtv~~~---~~k~~f~L~~~~ 96 (109)
T PF06129_consen 67 QVILYYDSRSGTVTVAYK---NKKYTFNLDFDD 96 (109)
T ss_pred ceEEEEccCCCeEEEEEC---CcEEEEEccchh
Confidence 566665555555544333 345666555443
No 86
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.17 E-value=60 Score=23.93 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHHHHH
Q 030732 8 LDRATVLPLILLLCL 22 (172)
Q Consensus 8 ~~~~~~~~~~~~~c~ 22 (172)
|||.+++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 355555555554443
No 87
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.94 E-value=2.3e+02 Score=22.15 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=27.8
Q ss_pred eEEEEECCCCCeEEeeeccceeeEEEEeccCcee-----EEeeeeCCCCCC-cccEEEEEEE
Q 030732 75 VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNY-----MACFWLGSNPQK-VADATLGLDW 130 (172)
Q Consensus 75 v~v~V~dP~g~~l~~~~~~~~g~f~fta~~~G~y-----~iCF~n~~~~~~-~~~~~V~fdi 130 (172)
+-+..+++.++.+ .....|+.+..+.|.| =|||.-+.-..+ .-.+-|.|-+
T Consensus 97 ~~y~a~N~sd~~i-----tg~A~~nv~P~~Ag~YF~KveCFCFteq~L~pgE~vemPV~FfV 153 (195)
T COG3175 97 IFYEAENLSDKPI-----TGQATYNVAPGQAGAYFNKVECFCFTEQTLKPGETVEMPVVFFV 153 (195)
T ss_pred EEEEEecCCCCCc-----eeEEecccChhHhhhheeeeeEEEeeecccCCCCeEeccEEEEE
Confidence 4444445544433 2345677778888887 589986432222 1234455544
No 88
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.80 E-value=5.8e+02 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.4
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEec----cCceeEEeeee
Q 030732 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTT----EAGNYMACFWL 114 (172)
Q Consensus 74 ~v~v~V~dP~g~~l~~~~~~~~g~f~fta~----~~G~y~iCF~n 114 (172)
.+.+++++|++..++.+.... |...|. ..|.|+.=..-
T Consensus 71 tV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~v 112 (403)
T COG4856 71 TVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQV 112 (403)
T ss_pred EEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeEe
Confidence 899999999998887765433 666653 35777776654
No 89
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.35 E-value=84 Score=18.88 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHhhh
Q 030732 10 RATVLPLILLLCLACY 25 (172)
Q Consensus 10 ~~~~~~~~~~~c~~~~ 25 (172)
|.+++.++++.|++.+
T Consensus 5 rwiili~iv~~Cl~ly 20 (47)
T PRK10299 5 RWVVLVVVVLACLLLW 20 (47)
T ss_pred eehHHHHHHHHHHHHH
Confidence 4455666666677643
No 90
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=20.32 E-value=9.1e+02 Score=24.94 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=61.8
Q ss_pred eEEEEEEEeCCCcceEeEEcCCCcEEEEEEEEeeC--CCCCCCCeeEEEEECCCCCeEEeeec-cceeeEEEEeccCcee
Q 030732 32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDE--AHPEHPPTVSAKVTSPYGNNLHHNEN-VTHGQFAFTTTEAGNY 108 (172)
Q Consensus 32 ~~al~f~l~~~~~~CF~e~v~~~~~v~~~y~v~~~--~~~~~~~~v~v~V~dP~g~~l~~~~~-~~~g~f~fta~~~G~y 108 (172)
+.++.|.|.-++++-...-. .+....|+.+...- ..+....+-.|.+.|..|++|...-. ...|+....--.+|+|
T Consensus 1316 a~pv~ftI~~~q~e~~kV~~-~n~~~~gsv~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdY 1394 (1531)
T COG4932 1316 ATPVNFTIEFNQEEAVKVTK-ENDAKTGSVVLTKLDSSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDY 1394 (1531)
T ss_pred ecceeEEEEecccccEEEEE-eeccccccEEEEEeecccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCce
Confidence 34567888777666544332 24445555554422 22222237889999999999866532 3579999999999999
Q ss_pred EEeeeeCCCCCCcccEEEEEEEEecc
Q 030732 109 MACFWLGSNPQKVADATLGLDWRIGF 134 (172)
Q Consensus 109 ~iCF~n~~~~~~~~~~~V~fdi~~G~ 134 (172)
+|-=....+..-...--|.|.|+.+.
T Consensus 1395 qfvETkAPtgY~Ld~tpv~FTIe~~q 1420 (1531)
T COG4932 1395 QFVETKAPTGYELDATPVDFTIEFNQ 1420 (1531)
T ss_pred eeEEccCCcceeccCCceEEEEEcCc
Confidence 99865322211122345666665543
No 91
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=20.18 E-value=88 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=13.4
Q ss_pred eehhh-hhHHHHHHHHHHhhhcccc
Q 030732 6 ISLDR-ATVLPLILLLCLACYICVV 29 (172)
Q Consensus 6 ~~~~~-~~~~~~~~~~c~~~~~~~~ 29 (172)
|++|+ ..+|+.+++|||.--.|.+
T Consensus 1 ~~~~~~~l~l~~llvllll~av~av 25 (442)
T KOG3866|consen 1 MRWRTMILPLVILLVLLLLDAVCAV 25 (442)
T ss_pred CcchhhHHHHHHHHHHHHHhhhcCC
Confidence 34555 4556666677776533433
No 92
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=20.11 E-value=92 Score=24.10 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=6.8
Q ss_pred eEEEEECCCCCeEE
Q 030732 75 VSAKVTSPYGNNLH 88 (172)
Q Consensus 75 v~v~V~dP~g~~l~ 88 (172)
-++.|+|++|++|.
T Consensus 163 gr~r~kd~~g~~~~ 176 (179)
T PF07202_consen 163 GRVRIKDKDGNVIM 176 (179)
T ss_pred CcEEEecCCCCEEe
Confidence 34445555555544
No 93
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.08 E-value=63 Score=23.47 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.4
Q ss_pred cCceeEEeeeeCC
Q 030732 104 EAGNYMACFWLGS 116 (172)
Q Consensus 104 ~~G~y~iCF~n~~ 116 (172)
-.|.|++||.-.+
T Consensus 115 P~GsYRiCFrL~~ 127 (145)
T TIGR02542 115 PEGSYRICFRLFN 127 (145)
T ss_pred CCCceEEEEEEec
Confidence 4799999999644
No 94
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=20.06 E-value=4.8e+02 Score=21.13 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=28.4
Q ss_pred eeEEEEECCCCCeE-Eeeecc-------ceeeEEEEeccC-ce--eEEeeeeCCCCCCcccEEEEEE
Q 030732 74 TVSAKVTSPYGNNL-HHNENV-------THGQFAFTTTEA-GN--YMACFWLGSNPQKVADATLGLD 129 (172)
Q Consensus 74 ~v~v~V~dP~g~~l-~~~~~~-------~~g~f~fta~~~-G~--y~iCF~n~~~~~~~~~~~V~fd 129 (172)
..-+.|.|++++.+ +.+.-. ..-.+.|++... |. |.++++--+..|-+.+..+.++
T Consensus 247 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~ 313 (314)
T PF02889_consen 247 SWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPIN 313 (314)
T ss_dssp -EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEE
T ss_pred cEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEee
Confidence 56677888877554 333211 234678888776 65 7777765444442234455544
Done!