BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030733
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 58 SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL 117
S G + YE+LG+Q A+ ++IK AYRKLA HPD ++ E + KF + EAYE L
Sbjct: 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-EEAEKKFKLVSEAYEVL 63
Query: 118 SDPKKRADYDRT 129
SD KKR+ YDR
Sbjct: 64 SDSKKRSLYDRA 75
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y ILG+Q + IKTAYR+LAR HPDV S+ ++ KF L EA+E L D ++RA
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDV---SKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 125 DYDRTLFRRRRPS 137
+YD+ R P
Sbjct: 88 EYDQLWQHRNDPG 100
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y++LG++ AT +E+K AYRKLA HPD +N N KF ++ +AYE LSD KKR
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPD-----KNPNEGEKFKQISQAYEVLSDAKKRE 63
Query: 125 DYDR 128
YD+
Sbjct: 64 LYDK 67
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y++LG++ A+ E+K AYRK+A HPD +N + A +F ++ +AYE LSD KKR
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD-----KNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 125 DYDR 128
YD+
Sbjct: 66 IYDQ 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y I+G++ + IKTAYR+LAR HPDV S+ ++ +F ++ EA+E LSD ++RA
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 125 DYDR 128
+YD+
Sbjct: 65 EYDQ 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
G YEILG+ GA+ +++K AYR+LA HPD K+ + F + AY LS+P+
Sbjct: 7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 122 KRADYDR 128
KR YD+
Sbjct: 64 KRKQYDQ 70
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
G Y+ILG+ A+ +EIK AY +LA+ HPD + + KF +L EAYE LSD
Sbjct: 7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDT--NKDDPKAKEKFSQLAEAYEVLSDEV 64
Query: 122 KRADYD 127
KR YD
Sbjct: 65 KRKQYD 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 58 SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL 117
S G YE+L + A+ + IK AYRKLA HPD +++ E + +F ++ EAYE L
Sbjct: 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVL 63
Query: 118 SDPKKRADYDR 128
SD KKR YDR
Sbjct: 64 SDAKKRDIYDR 74
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y+ LG+ GA+ +EIK AYR+ A HPD K++ + KF ++ EAY+ LSDP+KR
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 125 DYDR 128
+DR
Sbjct: 63 IFDR 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y+ILG+ A+ ++IK A+ KLA HPD K+++ ++ KF ++ EAYETLSD +R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRK 66
Query: 125 DYD 127
+YD
Sbjct: 67 EYD 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPK 121
YEILG+ A +EI+ AY++LA HPD ++Q + A KF ++ EAYE L+D +
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRADYDR 128
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPK 121
YEILG+ A +EI+ AY++LA HPD ++Q + A KF ++ EAYE L+D +
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRADYDR 128
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPK 121
YEILG+ A +EI+ AY++LA HPD ++Q + A KF ++ EAYE L+D +
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRADYDR 128
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y +LG+ A+ +IK AY+KLAR HPD K+++ + +F+++ +AYE LS+ +KR
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 125 DYD 127
+YD
Sbjct: 77 NYD 79
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
+ Y +LG+ A+ +EI+ A++KLA LHPD N N+ F+K++ AYE L D
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPD--KNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 123 RADYDR 128
R YD+
Sbjct: 80 RKKYDK 85
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
SLY +LG+ AT +IK +YRKLA HPD N +A KF +++ A+ L+D K
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPD--KNPDNPEAADKFKEINNAHAILTDATK 75
Query: 123 RADYDR 128
R YD+
Sbjct: 76 RNIYDK 81
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
+ Y +LG+ A+ +EI+ A++KLA LHPD N N+ F+K++ AYE L D
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPD--KNPNNPNAHGDFLKINRAYEVLKDEDL 60
Query: 123 RADYDR 128
R YD+
Sbjct: 61 RKKYDK 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 64 LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
LY++LG+ A QE+K YRK A HPD KF ++ EA+E L+DP+KR
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPT-----GDTEKFKEISEAFEILNDPQKR 64
Query: 124 ADYDR 128
YD+
Sbjct: 65 EIYDQ 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
S YEIL + A+ +IK AYR+ A HPD ++ E + KF ++ EAYE LSD K
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-EFAEKKFKEVAEAYEVLSDKHK 61
Query: 123 RADYDR 128
R YDR
Sbjct: 62 REIYDR 67
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPD-VAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
Y+ILG++ A QEI AYRKLA HPD + + + + KF+ + A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 124 ADYD 127
+D
Sbjct: 445 KKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPD-VAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
Y+ILG++ A QEI AYRKLA HPD + + + + KF+ + A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 124 ADYD 127
+D
Sbjct: 445 KKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
+LY++LG+ + AT +IK AY + + HPD S + +A +F ++ +AY L
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPD--RNSGSAEAAERFTRISQAYVVLGSATL 75
Query: 123 RADYDRTLF 131
R YDR L
Sbjct: 76 RRKYDRGLL 84
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPD 93
+++LG++ GA+ E+ AYRKLA +LHPD
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHP-----DVAAKSQNENSAYKFMKLHEAYETLSD 119
Y ILG A ++K Y+KL + HP DV A + E KF+++ +A++ L +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTM-EECMQKFIEIDQAWKILGN 77
Query: 120 PKKRADYDRTLFRRRRPS 137
+ + YD +R PS
Sbjct: 78 EETKKKYD---LQRSGPS 92
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 60 GPGSLYEILGI-QTGATCQEIKTAYRKLARVLHPD-VAAKSQNENSAYKFMKLHEAYETL 117
G + Y++L + + Q++ AYR LAR HPD V K + + +F + AYETL
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
Query: 118 SDPKKRADYDRTL 130
D + + +YD L
Sbjct: 73 KDDEAKTNYDYYL 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKS----QNENSAYKFMKLHEAYETLSDP 120
Y ILG A ++K Y+KL + HPD + E KF+++ +A++ L +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 121 KKRADYD 127
+ + +YD
Sbjct: 73 ETKREYD 79
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 79 IKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR 132
++ YR+L HPD+A + ++S L++AY TL DP +R+ Y L R
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSST-----LNQAYHTLKDPLRRSQYMLKLLR 83
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 79 IKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR 132
++ YR+L HPD+A + ++S L++AY TL DP +R+ Y L R
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSST-----LNQAYHTLKDPLRRSQYMLKLLR 75
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
Y +LG ++ ++I ++ A HPD +N + F KL +A E L++ + RA
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPD--KHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 125 DYDRTLFRRRRPSGSPF 141
YD RR PF
Sbjct: 81 RYDHW---RRSQMSMPF 94
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 65 YEILG--IQTGATCQEIKTAYRKLARVLHPD---VAAKSQNENSAYKFMKLHEAYETLSD 119
+E+ G IQ + + +R L + HPD A++ + + ++++AY+TL D
Sbjct: 7 FELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKD 66
Query: 120 PKKRADY 126
P +RA+Y
Sbjct: 67 PLRRAEY 73
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSD 119
++ +G+ T +++K YRK V+HPD A E A FM+L++A+ +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 68 LGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKKRADY 126
+G+ T +++K YRK V+HPD A E A FM+L++A+ + ++ Y
Sbjct: 55 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 114
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 80 KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGS 139
K R + HP V QN+N+ +KF+ + E L ++ D F PS S
Sbjct: 18 KAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVL----QQIDMTEKRFSAECPSNS 73
Query: 140 PFAVSGVANTMATSSNSRFCAYSRRTWETD 169
P ++ + ++ A S CA S W D
Sbjct: 74 PCSLE-IQSSEAGDSALYLCA-SSLNWSQD 101
>pdb|1X87|A Chain A, 2.4a X-Ray Structure Of Urocanase Protein Complexed With
Nad
pdb|1X87|B Chain B, 2.4a X-Ray Structure Of Urocanase Protein Complexed With
Nad
Length = 551
Score = 29.6 bits (65), Expect = 0.88, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 80 KTAYRKLARVLHPDVAAKSQNENSAY----KFMKLHEAYETLSDPKKRADYDRTLFRRRR 135
+ A R L LHPDVA + +E Y K + E YE + D R + D TL +
Sbjct: 23 EAALRXLNNNLHPDVAERP-DELIVYGGIGKAARNWECYEAIVDTLLRLENDETLLIQ-- 79
Query: 136 PSGSPFAV 143
SG P AV
Sbjct: 80 -SGKPVAV 86
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 91 HPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTM 150
HP V QN+N+ +KF+ + E L ++ D F PS SP ++ + ++
Sbjct: 55 HPVVFWYQQNKNNEFKFLINFQNQEVL----QQIDMTEKRFSAECPSNSPCSLE-IQSSE 109
Query: 151 ATSSNSRFCAYSRRTWETD 169
A S CA S W D
Sbjct: 110 AGDSALYLCA-SSLNWSQD 127
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 80 KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGS 139
K R + HP V QN+N+ +KF+ + E L ++ D F PS S
Sbjct: 17 KAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVL----QQIDMTEKRFSAECPSNS 72
Query: 140 PFAVSGVANTMATSSNSRFCAYSRRTWETD 169
P ++ + ++ A S CA S +D
Sbjct: 73 PCSLE-IQSSEAGDSALYLCASSLNNANSD 101
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 68 LGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYK-FMKLHEAYETLSDPKKRADY 126
+G T +++K YRK V+HPD A E A F +L++A+ + ++ Y
Sbjct: 42 VGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 68 LGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAY 114
+G+ T +++K YRK V+HP A E A FM+L++A+
Sbjct: 39 VGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 86
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 68 LGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAY 114
+G+ T +++K YRK V+HP A E A FM+L++A+
Sbjct: 40 VGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 87
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 50 TRTHHHITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYK 106
R H H GPG EILGI AT ++ + +HPD A + A K
Sbjct: 148 VRLHGH--RLGPGLRVEILGIVRSATLDALEVHKKDPIPEVHPDPAELEEFRELADK 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.126 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,998,516
Number of Sequences: 62578
Number of extensions: 171471
Number of successful extensions: 507
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 43
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)