Query         030733
Match_columns 172
No_of_seqs    230 out of 1361
Neff          7.2 
Searched_HMMs 46136
Date          Fri Mar 29 03:45:29 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030733hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG0484 DnaJ DnaJ-class molecu  99.9 1.2E-24 2.7E-29  185.3   9.4   73   60-134     2-74  (371)
  2 KOG0713 Molecular chaperone (D  99.9   3E-23 6.5E-28  173.4   9.6   75   61-137    15-89  (336)
  3 KOG0712 Molecular chaperone (D  99.8   4E-21 8.7E-26  161.9   8.9   74   61-139     3-76  (337)
  4 PRK14288 chaperone protein Dna  99.8 1.2E-20 2.5E-25  162.5   7.9   69   61-131     2-70  (369)
  5 PRK14296 chaperone protein Dna  99.8 3.6E-20 7.8E-25  159.6   7.1   68   61-131     3-70  (372)
  6 PF00226 DnaJ:  DnaJ domain;  I  99.8 5.3E-20 1.1E-24  120.6   5.7   64   63-127     1-64  (64)
  7 PRK14279 chaperone protein Dna  99.8 8.7E-20 1.9E-24  158.2   7.6   68   61-130     8-75  (392)
  8 PRK14286 chaperone protein Dna  99.8 2.1E-19 4.6E-24  154.8   7.7   69   61-131     3-71  (372)
  9 PTZ00037 DnaJ_C chaperone prot  99.8 2.9E-19 6.2E-24  156.0   7.3   65   61-131    27-91  (421)
 10 PRK14282 chaperone protein Dna  99.8 3.3E-19 7.2E-24  153.4   7.1   70   61-131     3-72  (369)
 11 PRK14287 chaperone protein Dna  99.8 4.9E-19 1.1E-23  152.5   7.7   68   61-131     3-70  (371)
 12 KOG0716 Molecular chaperone (D  99.8 4.8E-19   1E-23  144.3   6.5   69   61-131    30-98  (279)
 13 PRK14285 chaperone protein Dna  99.8 6.1E-19 1.3E-23  151.6   7.5   69   61-131     2-70  (365)
 14 PRK14295 chaperone protein Dna  99.8 6.5E-19 1.4E-23  152.6   7.7   67   61-129     8-74  (389)
 15 PRK14299 chaperone protein Dna  99.8 7.2E-19 1.5E-23  147.0   7.6   68   61-131     3-70  (291)
 16 PRK14278 chaperone protein Dna  99.8   6E-19 1.3E-23  152.3   7.3   66   62-130     3-68  (378)
 17 PRK14291 chaperone protein Dna  99.8 6.5E-19 1.4E-23  152.3   7.3   68   61-131     2-69  (382)
 18 PRK14283 chaperone protein Dna  99.8 7.6E-19 1.6E-23  151.7   7.4   68   61-131     4-71  (378)
 19 PRK14298 chaperone protein Dna  99.8 6.3E-19 1.4E-23  152.1   6.9   68   61-131     4-71  (377)
 20 PRK14276 chaperone protein Dna  99.8 6.4E-19 1.4E-23  152.2   6.9   68   61-131     3-70  (380)
 21 PRK14277 chaperone protein Dna  99.8 1.2E-18 2.5E-23  150.9   7.9   69   61-131     4-72  (386)
 22 PRK14280 chaperone protein Dna  99.8 1.4E-18 3.1E-23  149.9   7.1   67   62-131     4-70  (376)
 23 PRK14294 chaperone protein Dna  99.8   2E-18 4.4E-23  148.5   7.9   69   61-131     3-71  (366)
 24 PRK14301 chaperone protein Dna  99.8 1.6E-18 3.5E-23  149.4   7.1   69   61-131     3-71  (373)
 25 PRK14284 chaperone protein Dna  99.7   2E-18 4.4E-23  149.6   7.6   67   63-131     2-68  (391)
 26 KOG0715 Molecular chaperone (D  99.7 2.4E-18 5.2E-23  143.7   7.7   68   63-133    44-111 (288)
 27 PRK14297 chaperone protein Dna  99.7 1.6E-18 3.4E-23  149.7   6.8   69   61-131     3-71  (380)
 28 PRK14281 chaperone protein Dna  99.7   2E-18 4.4E-23  149.9   7.4   69   61-131     2-70  (397)
 29 PRK10767 chaperone protein Dna  99.7 3.5E-18 7.5E-23  147.2   7.6   69   61-131     3-71  (371)
 30 KOG0691 Molecular chaperone (D  99.7 7.3E-18 1.6E-22  140.6   7.7   75   61-137     4-78  (296)
 31 PRK14290 chaperone protein Dna  99.7 5.2E-18 1.1E-22  145.9   7.0   69   62-131     3-71  (365)
 32 PRK14300 chaperone protein Dna  99.7 5.4E-18 1.2E-22  146.1   6.8   67   62-131     3-69  (372)
 33 KOG0717 Molecular chaperone (D  99.7 8.2E-18 1.8E-22  145.3   7.8   71   61-132     7-77  (508)
 34 TIGR02349 DnaJ_bact chaperone   99.7   7E-18 1.5E-22  144.4   6.9   66   63-131     1-66  (354)
 35 smart00271 DnaJ DnaJ molecular  99.7 1.4E-17   3E-22  107.4   6.3   59   62-121     1-59  (60)
 36 KOG0718 Molecular chaperone (D  99.7 7.6E-18 1.7E-22  145.7   6.6   80   60-139     7-87  (546)
 37 PRK14289 chaperone protein Dna  99.7 1.3E-17 2.8E-22  144.3   7.9   69   61-131     4-72  (386)
 38 PRK14293 chaperone protein Dna  99.7 9.9E-18 2.2E-22  144.5   7.2   68   61-131     2-69  (374)
 39 PRK10266 curved DNA-binding pr  99.7 1.1E-17 2.3E-22  140.9   7.0   66   62-130     4-69  (306)
 40 PRK14292 chaperone protein Dna  99.7 1.4E-17   3E-22  143.5   6.9   67   62-131     2-68  (371)
 41 KOG0719 Molecular chaperone (D  99.7 1.8E-17 3.9E-22  132.7   5.6   71   61-131    13-83  (264)
 42 cd06257 DnaJ DnaJ domain or J-  99.7 4.7E-17   1E-21  103.0   6.5   55   63-119     1-55  (55)
 43 PTZ00341 Ring-infected erythro  99.7 1.6E-16 3.5E-21  147.6   7.6   69   60-131   571-639 (1136)
 44 COG2214 CbpA DnaJ-class molecu  99.6 4.2E-16   9E-21  121.9   7.0   70   60-130     4-73  (237)
 45 PRK05014 hscB co-chaperone Hsc  99.6   1E-15 2.2E-20  119.1   7.9   69   63-131     2-75  (171)
 46 KOG0721 Molecular chaperone (D  99.6 9.7E-16 2.1E-20  121.6   7.0   68   61-130    98-165 (230)
 47 PRK01356 hscB co-chaperone Hsc  99.6 9.9E-16 2.1E-20  118.6   6.5   70   62-131     2-74  (166)
 48 KOG0624 dsRNA-activated protei  99.6 1.3E-15 2.8E-20  128.9   6.3   72   60-131   392-464 (504)
 49 TIGR03835 termin_org_DnaJ term  99.6   2E-15 4.3E-20  137.7   7.9   67   62-131     2-68  (871)
 50 PRK03578 hscB co-chaperone Hsc  99.6   5E-15 1.1E-19  115.7   8.4   72   61-132     5-81  (176)
 51 PRK00294 hscB co-chaperone Hsc  99.6 5.6E-15 1.2E-19  115.1   8.4   72   61-132     3-79  (173)
 52 KOG0720 Molecular chaperone (D  99.6 3.5E-15 7.7E-20  129.1   6.5   70   61-133   234-303 (490)
 53 PHA03102 Small T antigen; Revi  99.6 2.9E-15 6.2E-20  114.3   4.5   64   62-131     5-70  (153)
 54 KOG0722 Molecular chaperone (D  99.5 1.6E-14 3.6E-19  117.2   3.9   73   57-132    28-100 (329)
 55 KOG0550 Molecular chaperone (D  99.4 1.2E-13 2.5E-18  118.9   5.8   72   61-133   372-443 (486)
 56 KOG0714 Molecular chaperone (D  99.4   3E-13 6.5E-18  110.4   4.0   70   61-131     2-71  (306)
 57 PRK01773 hscB co-chaperone Hsc  99.4 1.8E-12 3.9E-17  101.0   7.9   70   62-131     2-76  (173)
 58 PTZ00100 DnaJ chaperone protei  99.4 4.9E-13 1.1E-17   97.5   4.2   52   61-118    64-115 (116)
 59 PRK09430 djlA Dna-J like membr  99.4 7.6E-13 1.6E-17  109.6   5.5   59   61-119   199-262 (267)
 60 COG5407 SEC63 Preprotein trans  99.3 3.1E-12 6.7E-17  111.0   4.8   71   61-131    97-170 (610)
 61 PHA02624 large T antigen; Prov  99.3 8.5E-12 1.8E-16  112.6   7.4   60   61-126    10-71  (647)
 62 TIGR00714 hscB Fe-S protein as  99.3 1.6E-11 3.5E-16   94.3   7.5   59   73-131     2-63  (157)
 63 KOG1150 Predicted molecular ch  99.2 5.2E-11 1.1E-15   93.8   6.6   68   60-128    51-118 (250)
 64 COG5269 ZUO1 Ribosome-associat  99.1 1.3E-10 2.9E-15   95.4   4.2   73   61-133    42-117 (379)
 65 KOG0568 Molecular chaperone (D  98.4   3E-07 6.4E-12   74.4   4.2   56   62-120    47-103 (342)
 66 KOG0723 Molecular chaperone (D  98.3   9E-07   2E-11   63.2   4.3   50   65-120    59-108 (112)
 67 KOG1789 Endocytosis protein RM  98.2 1.3E-06 2.8E-11   82.9   5.3   53   61-118  1280-1336(2235)
 68 KOG3192 Mitochondrial J-type c  98.2 1.9E-06 4.1E-11   65.6   5.2   77   61-137     7-88  (168)
 69 KOG0431 Auxilin-like protein a  97.3 0.00036 7.9E-09   62.0   4.8   47   71-117   397-448 (453)
 70 COG1076 DjlA DnaJ-domain-conta  97.2 0.00034 7.4E-09   54.5   3.1   56   62-117   113-173 (174)
 71 COG1076 DjlA DnaJ-domain-conta  97.1 0.00056 1.2E-08   53.2   3.8   69   63-131     2-75  (174)
 72 PF03656 Pam16:  Pam16;  InterP  96.1  0.0089 1.9E-07   44.4   4.3   53   63-121    59-111 (127)
 73 PF11833 DUF3353:  Protein of u  92.3    0.32 6.9E-06   38.7   5.2   38   71-118     1-38  (194)
 74 PF13446 RPT:  A repeated domai  89.7    0.74 1.6E-05   29.4   4.1   26   63-88      6-31  (62)
 75 KOG0724 Zuotin and related mol  88.6    0.49 1.1E-05   40.2   3.5   57   74-130     4-62  (335)
 76 PF14687 DUF4460:  Domain of un  82.0     2.5 5.4E-05   30.6   4.0   47   73-119     5-53  (112)
 77 COG5552 Uncharacterized conser  79.7     7.6 0.00016   26.2   5.3   34   62-95      3-36  (88)
 78 PF10041 DUF2277:  Uncharacteri  71.6      20 0.00044   24.2   5.8   58   62-119     3-61  (78)
 79 KOG3442 Uncharacterized conser  71.3     5.4 0.00012   29.6   3.2   50   64-119    61-110 (132)
 80 PF07709 SRR:  Seven Residue Re  60.1     6.2 0.00014   17.8   1.1   13  106-118     2-14  (14)
 81 PF12574 120_Rick_ant:  120 KDa  53.1     5.2 0.00011   32.8   0.3   80   84-169     3-85  (255)
 82 cd01388 SOX-TCF_HMG-box SOX-TC  51.1      50  0.0011   21.2   4.9   42   81-129    14-55  (72)
 83 KOG3960 Myogenic helix-loop-he  47.1      12 0.00025   31.1   1.5   20  104-123   127-151 (284)
 84 cd01390 HMGB-UBF_HMG-box HMGB-  38.4      94   0.002   19.0   5.0   41   82-129    14-54  (66)
 85 cd00084 HMG-box High Mobility   37.0      97  0.0021   18.7   5.0   42   80-128    12-53  (66)
 86 PF12434 Malate_DH:  Malate deh  34.2      50  0.0011   17.8   2.2   17   76-92     10-26  (28)
 87 cd01389 MATA_HMG-box MATA_HMG-  33.8 1.3E+02  0.0029   19.4   5.0   42   80-128    13-54  (77)
 88 KOG0527 HMG-box transcription   31.3      86  0.0019   27.0   4.4   44   79-129    73-116 (331)
 89 PF03206 NifW:  Nitrogen fixati  30.2 1.6E+02  0.0035   21.0   5.0   65   61-126    14-85  (105)
 90 PRK14102 nifW nitrogenase stab  28.8   1E+02  0.0022   22.1   3.8   63   61-123    14-83  (105)
 91 PF15178 TOM_sub5:  Mitochondri  28.3   1E+02  0.0022   18.9   3.2   23   65-87      2-24  (51)
 92 PF00505 HMG_box:  HMG (high mo  27.2 1.6E+02  0.0034   18.2   4.4   39   80-125    12-50  (69)
 93 KOG2320 RAS effector RIN1 (con  27.2      59  0.0013   30.3   2.8   28   67-94    394-421 (651)
 94 PF12725 DUF3810:  Protein of u  25.1      78  0.0017   26.9   3.1   59   62-120    82-149 (318)
 95 PLN00112 malate dehydrogenase   25.0      33 0.00071   30.7   0.8   24   60-83     74-97  (444)
 96 PF08447 PAS_3:  PAS fold;  Int  24.9      12 0.00027   24.2  -1.5   28   62-93      6-34  (91)
 97 PF14606 Lipase_GDSL_3:  GDSL-l  24.7      91   0.002   24.4   3.2   28   67-94     64-94  (178)
 98 COG3195 Uncharacterized protei  24.0 1.8E+02  0.0038   22.8   4.5   46   71-116    41-118 (176)
 99 COG0089 RplW Ribosomal protein  23.1      73  0.0016   22.4   2.1   22   67-88     25-46  (94)
100 COG2879 Uncharacterized small   22.3 1.9E+02  0.0041   18.9   3.7   16   81-96     26-41  (65)
101 PF11126 Phage_DsbA:  Transcrip  21.1 1.5E+02  0.0032   19.7   3.1   32   81-117    35-66  (69)
102 PF10475 DUF2450:  Protein of u  20.3 1.2E+02  0.0027   25.1   3.4   34   76-121   181-214 (291)

No 1  
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91  E-value=1.2e-24  Score=185.25  Aligned_cols=73  Identities=45%  Similarity=0.682  Sum_probs=66.9

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRR  134 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~  134 (172)
                      +.+|||+||||+++|+.+|||+|||+|+++||||+++.  .++++++|++|++||+||+||++|++||++.....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~   74 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF   74 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence            36799999999999999999999999999999999764  58999999999999999999999999998876443


No 2  
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89  E-value=3e-23  Score=173.40  Aligned_cols=75  Identities=43%  Similarity=0.625  Sum_probs=68.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS  137 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~  137 (172)
                      .+|||+||||+.+|+..|||+|||+|++++|||||++  .+.+.+.|+.|+.||+||+||++|+.||......-...
T Consensus        15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd--dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~   89 (336)
T KOG0713|consen   15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPD--DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE   89 (336)
T ss_pred             CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence            5799999999999999999999999999999999775  68999999999999999999999999999997555433


No 3  
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84  E-value=4e-21  Score=161.91  Aligned_cols=74  Identities=43%  Similarity=0.636  Sum_probs=66.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCCCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGS  139 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~~~  139 (172)
                      +..||+||||+++|+.+|||+|||+|+++|||||++.     +.++|++|.+||+||+||++|+.||+.....-..++.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~   76 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG   76 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC
Confidence            5689999999999999999999999999999999764     7889999999999999999999999999766554443


No 4  
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83  E-value=1.2e-20  Score=162.47  Aligned_cols=69  Identities=45%  Similarity=0.571  Sum_probs=63.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  ...+.++|++|++||+||+||.+|+.||++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            4699999999999999999999999999999999753  35688999999999999999999999998654


No 5  
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.81  E-value=3.6e-20  Score=159.57  Aligned_cols=68  Identities=38%  Similarity=0.612  Sum_probs=62.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            3699999999999999999999999999999999753   5688999999999999999999999998654


No 6  
>PF00226 DnaJ:  DnaJ domain;  InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation:  +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+   It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.80  E-value=5.3e-20  Score=120.57  Aligned_cols=64  Identities=45%  Similarity=0.802  Sum_probs=59.5

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYD  127 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD  127 (172)
                      |||+||||+++++.++||++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999976533 568899999999999999999999998


No 7  
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80  E-value=8.7e-20  Score=158.18  Aligned_cols=68  Identities=44%  Similarity=0.714  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+||.+|+.||+..
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            4699999999999999999999999999999999753  3678899999999999999999999999975


No 8  
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.79  E-value=2.1e-19  Score=154.83  Aligned_cols=69  Identities=49%  Similarity=0.677  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            3699999999999999999999999999999999753  35688999999999999999999999998643


No 9  
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.78  E-value=2.9e-19  Score=156.03  Aligned_cols=65  Identities=46%  Similarity=0.642  Sum_probs=59.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.      .++|++|++||+||+||.+|+.||....
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            5699999999999999999999999999999998632      4799999999999999999999998654


No 10 
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.78  E-value=3.3e-19  Score=153.43  Aligned_cols=70  Identities=46%  Similarity=0.748  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.. ...+.++|++|++||+||+||.+|+.||....
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~   72 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY   72 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence            46999999999999999999999999999999997542 24578999999999999999999999998654


No 11 
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.77  E-value=4.9e-19  Score=152.51  Aligned_cols=68  Identities=47%  Similarity=0.777  Sum_probs=62.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||++|+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~   70 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH   70 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence            3599999999999999999999999999999998653   5678899999999999999999999998653


No 12 
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77  E-value=4.8e-19  Score=144.32  Aligned_cols=69  Identities=43%  Similarity=0.612  Sum_probs=64.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..++|+||||+++++.++|||+||+|++++|||+++++  +++.++|++||+||+||+||.+|..||.++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            45899999999999999999999999999999998763  7889999999999999999999999999853


No 13 
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.77  E-value=6.1e-19  Score=151.64  Aligned_cols=69  Identities=46%  Similarity=0.657  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+|+.+|+.||.+..
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~   70 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGH   70 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence            3699999999999999999999999999999999753  36678899999999999999999999998653


No 14 
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.77  E-value=6.5e-19  Score=152.59  Aligned_cols=67  Identities=45%  Similarity=0.739  Sum_probs=61.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRT  129 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~  129 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  ...+.++|++|++||+||+||.+|+.||+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   74 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG--DAKAEERFKEISEAYDVLSDEKKRKEYDEA   74 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence            4699999999999999999999999999999999753  356889999999999999999999999983


No 15 
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77  E-value=7.2e-19  Score=147.04  Aligned_cols=68  Identities=44%  Similarity=0.649  Sum_probs=62.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++   ..+.++|++|++||++|+||.+|+.||....
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            4699999999999999999999999999999999753   5678899999999999999999999999654


No 16 
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77  E-value=6e-19  Score=152.29  Aligned_cols=66  Identities=48%  Similarity=0.678  Sum_probs=61.6

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||...
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G   68 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRIVDLGG   68 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence            589999999999999999999999999999999763   668899999999999999999999999854


No 17 
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.77  E-value=6.5e-19  Score=152.27  Aligned_cols=68  Identities=47%  Similarity=0.724  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||....
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            4699999999999999999999999999999999764   5678899999999999999999999999764


No 18 
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.76  E-value=7.6e-19  Score=151.66  Aligned_cols=68  Identities=47%  Similarity=0.719  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||++|+|+.+|+.||+...
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            5699999999999999999999999999999999753   5788999999999999999999999999654


No 19 
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76  E-value=6.3e-19  Score=152.10  Aligned_cols=68  Identities=46%  Similarity=0.702  Sum_probs=62.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   ..+.++|++|++||+||+||.+|+.||+...
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH   71 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence            4699999999999999999999999999999999753   5678899999999999999999999998653


No 20 
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76  E-value=6.4e-19  Score=152.23  Aligned_cols=68  Identities=44%  Similarity=0.708  Sum_probs=62.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   ..+.++|++|++||+||+||.+|+.||.+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   70 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA   70 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence            3699999999999999999999999999999999763   5678899999999999999999999998653


No 21 
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.76  E-value=1.2e-18  Score=150.89  Aligned_cols=69  Identities=48%  Similarity=0.775  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  ...++++|++|++||+||+||.+|+.||....
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   72 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGH   72 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence            3699999999999999999999999999999999753  35688899999999999999999999998653


No 22 
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75  E-value=1.4e-18  Score=149.88  Aligned_cols=67  Identities=46%  Similarity=0.745  Sum_probs=62.0

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||....
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   70 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQYDQFGH   70 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence            599999999999999999999999999999999753   5678899999999999999999999998643


No 23 
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.75  E-value=2e-18  Score=148.46  Aligned_cols=69  Identities=45%  Similarity=0.643  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+||.+|+.||....
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~   71 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH   71 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence            4699999999999999999999999999999999753  35678899999999999999999999998754


No 24 
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.75  E-value=1.6e-18  Score=149.42  Aligned_cols=69  Identities=46%  Similarity=0.664  Sum_probs=63.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.  ...+.++|++|++||+||+||.+|+.||.+..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~   71 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH   71 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence            4699999999999999999999999999999999754  35688899999999999999999999998754


No 25 
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.75  E-value=2e-18  Score=149.60  Aligned_cols=67  Identities=45%  Similarity=0.667  Sum_probs=62.2

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||+++|+.+|||+|||+|+++||||+++.  ...+.++|++|++||+||+|+.+|+.||+...
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   68 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK   68 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence            89999999999999999999999999999999754  46688899999999999999999999998754


No 26 
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75  E-value=2.4e-18  Score=143.65  Aligned_cols=68  Identities=44%  Similarity=0.728  Sum_probs=64.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      |||+||||.++|+..|||+||++|+|+||||.+..   .++.++|++|.+|||||+|+++|..||..+...
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            89999999999999999999999999999998765   489999999999999999999999999999865


No 27 
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.75  E-value=1.6e-18  Score=149.75  Aligned_cols=69  Identities=45%  Similarity=0.721  Sum_probs=62.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~   71 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT   71 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence            3599999999999999999999999999999999753  35688999999999999999999999998643


No 28 
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75  E-value=2e-18  Score=149.87  Aligned_cols=69  Identities=42%  Similarity=0.634  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.  ...+.++|++|++||++|+|+.+|+.||....
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            3599999999999999999999999999999999753  35678899999999999999999999998654


No 29 
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.74  E-value=3.5e-18  Score=147.20  Aligned_cols=69  Identities=46%  Similarity=0.713  Sum_probs=62.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.  ...+.++|++|++||++|+|+.+|+.||....
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~   71 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH   71 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence            4699999999999999999999999999999999753  35688899999999999999999999998654


No 30 
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73  E-value=7.3e-18  Score=140.57  Aligned_cols=75  Identities=43%  Similarity=0.578  Sum_probs=68.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS  137 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~  137 (172)
                      ..|||+||||..+++..+|+++|+..++++||||+++  ++.+.+.|+.|.+||+||+|+..|+.||..+.....+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~--dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG--DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            5699999999999999999999999999999999876  45599999999999999999999999999998666555


No 31 
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73  E-value=5.2e-18  Score=145.88  Aligned_cols=69  Identities=42%  Similarity=0.716  Sum_probs=62.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.. ...+.++|++|++||++|+|+.+|+.||....
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~   71 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT   71 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence            5999999999999999999999999999999997532 34688999999999999999999999998543


No 32 
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.73  E-value=5.4e-18  Score=146.11  Aligned_cols=67  Identities=39%  Similarity=0.660  Sum_probs=61.6

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.   ..+.++|++|++||++|+|+.+|+.||....
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   69 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH   69 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence            599999999999999999999999999999999653   4577899999999999999999999999643


No 33 
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73  E-value=8.2e-18  Score=145.30  Aligned_cols=71  Identities=41%  Similarity=0.617  Sum_probs=65.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      .+.||+||||..+++..+||++||+|++++||||++. ..+++.++|++|+.||+||+||..|+.||....+
T Consensus         7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd-~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq   77 (508)
T KOG0717|consen    7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD-RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ   77 (508)
T ss_pred             hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc-cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence            4579999999999999999999999999999999765 3488999999999999999999999999977653


No 34 
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.72  E-value=7e-18  Score=144.41  Aligned_cols=66  Identities=50%  Similarity=0.792  Sum_probs=61.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||+++|+.++||+||++|++++|||+++   ...+.++|++|++||++|+|+.+|+.||....
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~   66 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK---DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH   66 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence            6999999999999999999999999999999975   35678899999999999999999999998654


No 35 
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.72  E-value=1.4e-17  Score=107.39  Aligned_cols=59  Identities=49%  Similarity=0.756  Sum_probs=53.9

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChh
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK  121 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~  121 (172)
                      .|||+||||+++++.++||++|+++++.+|||++... ...+.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            3799999999999999999999999999999997643 4778899999999999999985


No 36 
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72  E-value=7.6e-18  Score=145.72  Aligned_cols=80  Identities=40%  Similarity=0.611  Sum_probs=70.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCccc-CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCCC
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAK-SQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSG  138 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~~  138 (172)
                      ++.+||.+|+|+++|+.+|||+|||++++.|||||..+ +.+..+++.|+.|.+|||||+||.+|+.||....++-.-.|
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~g   86 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEG   86 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccC
Confidence            35689999999999999999999999999999999874 44577889999999999999999999999999876554444


Q ss_pred             C
Q 030733          139 S  139 (172)
Q Consensus       139 ~  139 (172)
                      .
T Consensus        87 w   87 (546)
T KOG0718|consen   87 W   87 (546)
T ss_pred             c
Confidence            3


No 37 
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.72  E-value=1.3e-17  Score=144.31  Aligned_cols=69  Identities=43%  Similarity=0.653  Sum_probs=63.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.  .+.+.++|++|++||++|+||.+|+.||....
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            4699999999999999999999999999999999764  35688999999999999999999999998654


No 38 
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.72  E-value=9.9e-18  Score=144.54  Aligned_cols=68  Identities=44%  Similarity=0.714  Sum_probs=62.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.   ..+.++|++|++||+||+||.+|+.||....
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            3599999999999999999999999999999999753   4578899999999999999999999998654


No 39 
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.72  E-value=1.1e-17  Score=140.86  Aligned_cols=66  Identities=41%  Similarity=0.734  Sum_probs=61.5

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .|||+||||+++++.+|||+|||+|++++|||+++.   ..+.++|++|++||++|+|+.+|+.||...
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            599999999999999999999999999999999653   568889999999999999999999999864


No 40 
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.71  E-value=1.4e-17  Score=143.48  Aligned_cols=67  Identities=48%  Similarity=0.704  Sum_probs=61.9

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.++||+||++|++++|||+++.   ..+.++|++|++||++|+||.+|+.||....
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~   68 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT   68 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence            489999999999999999999999999999999753   5688999999999999999999999999643


No 41 
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70  E-value=1.8e-17  Score=132.66  Aligned_cols=71  Identities=45%  Similarity=0.651  Sum_probs=66.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..++|+||||..+|+..+|++||++|++++|||+++..+..++.+.|++|+.||.||+|..+|+.||....
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            45899999999999999999999999999999998877778899999999999999999999999998754


No 42 
>cd06257 DnaJ DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.70  E-value=4.7e-17  Score=103.05  Aligned_cols=55  Identities=47%  Similarity=0.735  Sum_probs=50.9

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCC
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      |||+||||+++++.++||++|+++++++|||++...  ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999997543  6788999999999999986


No 43 
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.66  E-value=1.6e-16  Score=147.57  Aligned_cols=69  Identities=32%  Similarity=0.475  Sum_probs=63.2

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ...+||+||||+++|+..+||+|||+|++++|||+++.   ..+.++|+.|++||+||+||.+|+.||....
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~  639 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---NEGFHKFKKINEAYQILGDIDKKKMYNKFGY  639 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence            36799999999999999999999999999999999764   2577899999999999999999999998654


No 44 
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.64  E-value=4.2e-16  Score=121.87  Aligned_cols=70  Identities=46%  Similarity=0.689  Sum_probs=63.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ...+||+||||.++++.+|||++|+++++++|||+++.... .+.+.|+.|++||++|+|+.+|+.||...
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            35689999999999999999999999999999999875332 58899999999999999999999999863


No 45 
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.62  E-value=1e-15  Score=119.11  Aligned_cols=69  Identities=28%  Similarity=0.501  Sum_probs=60.4

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||++.  ++..+|+++|+++++++|||+......   ..+.+.+..||+||++|+||.+|+.|+..|.
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            89999999995  788999999999999999999764321   2356789999999999999999999998887


No 46 
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62  E-value=9.7e-16  Score=121.56  Aligned_cols=68  Identities=37%  Similarity=0.583  Sum_probs=62.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .-|+||||||+++++..|||++||+|++++||||.++.  ++.++.|..|++||+.|+|+..|+.|....
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG  165 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYG  165 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence            45899999999999999999999999999999997653  677788999999999999999999998764


No 47 
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.61  E-value=9.9e-16  Score=118.62  Aligned_cols=70  Identities=27%  Similarity=0.405  Sum_probs=59.4

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccC-CChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKS-QNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||++.  ++..+|+++|+++++++|||+.... ....+...+..||+||+||+||.+|+.|+..|.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            389999999996  7899999999999999999996531 112234568899999999999999999998885


No 48 
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.60  E-value=1.3e-15  Score=128.85  Aligned_cols=72  Identities=40%  Similarity=0.628  Sum_probs=64.4

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..+|||.||||.++|+..||.+|||+++.++|||-..+.+ +..++++|..|..|-+||+||++|+.||..-.
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD  464 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED  464 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence            4679999999999999999999999999999999765433 45688999999999999999999999998653


No 49 
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.60  E-value=2e-15  Score=137.66  Aligned_cols=67  Identities=46%  Similarity=0.701  Sum_probs=62.1

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.++||++||+|++++|||+++.   ..+.++|+.|++||++|+||.+|+.||....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            589999999999999999999999999999999654   5677899999999999999999999998765


No 50 
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.59  E-value=5e-15  Score=115.68  Aligned_cols=72  Identities=28%  Similarity=0.406  Sum_probs=60.9

Q ss_pred             ccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      ..|||+||||++.  ++..+|+++|+++++++|||+......   ..+.+.+..||+||++|+||.+|+.|+..|.+
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G   81 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG   81 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence            4699999999985  689999999999999999999764322   12345578999999999999999999998873


No 51 
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.58  E-value=5.6e-15  Score=115.05  Aligned_cols=72  Identities=31%  Similarity=0.467  Sum_probs=62.6

Q ss_pred             ccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      ..|||++|||++.  ++..+|+++|+++++++|||+.....   ...+.+.+..||+||+||+||.+|+.|+..|.+
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            5699999999996  67899999999999999999975432   234567899999999999999999999999873


No 52 
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57  E-value=3.5e-15  Score=129.07  Aligned_cols=70  Identities=31%  Similarity=0.496  Sum_probs=65.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      ..|+|.||||+.+++.++||+.||+++..+|||||-   .+.+++.|+.|+.||++|+|+++|..||..+.+.
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~---~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM---IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC---ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            569999999999999999999999999999999976   4899999999999999999999999999999754


No 53 
>PHA03102 Small T antigen; Reviewed
Probab=99.56  E-value=2.9e-15  Score=114.30  Aligned_cols=64  Identities=20%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             cCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..+|+||||+++|  +.++||+|||++++++|||+.+      ..++|+.|++||++|+|+.+|..||....
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~   70 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG------DEEKMKELNTLYKKFRESVKSLRDLDGEE   70 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc------hhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence            3579999999999  9999999999999999999843      34699999999999999999999998764


No 54 
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49  E-value=1.6e-14  Score=117.18  Aligned_cols=73  Identities=38%  Similarity=0.567  Sum_probs=66.1

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           57 TSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        57 ~~~~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      .-++..|+|+||||.++++..||.+|||+|++++|||++++   ++..+.|+.|..||++|.|...|..||-.|..
T Consensus        28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~---~e~k~~F~~iAtayeilkd~e~rt~ydyaldh  100 (329)
T KOG0722|consen   28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD---PESKKLFVKIATAYEILKDNETRTQYDYALDH  100 (329)
T ss_pred             hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC---chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence            34567899999999999999999999999999999999876   44558999999999999999999999999864


No 55 
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44  E-value=1.2e-13  Score=118.86  Aligned_cols=72  Identities=46%  Similarity=0.614  Sum_probs=65.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      .++||.||||..+++..|||++|+++++.+|||++... ..+++.+|++|.+||.+|+||.+|..||..-.-.
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle  443 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE  443 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence            46999999999999999999999999999999997654 4788889999999999999999999999776533


No 56 
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38  E-value=3e-13  Score=110.38  Aligned_cols=70  Identities=47%  Similarity=0.645  Sum_probs=64.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..++|+||+|.++++.++||+||+++++++|||+++.. ...+..+|++|.+||++|+|+.+|..||....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            45899999999999999999999999999999997766 56676799999999999999999999999887


No 57 
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.37  E-value=1.8e-12  Score=100.99  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=60.9

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||++|||++.  .+..+|++.|++|++.+|||+.....   ...+.+....||+||.+|+||.+|+.|-..|.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            489999999985  89999999999999999999975433   13345677899999999999999999999988


No 58 
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.37  E-value=4.9e-13  Score=97.47  Aligned_cols=52  Identities=33%  Similarity=0.417  Sum_probs=46.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS  118 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLs  118 (172)
                      ..++|+||||+++++.+|||++||+|++++|||+.      +..+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg------Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG------GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999999972      34567899999999985


No 59 
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.36  E-value=7.6e-13  Score=109.59  Aligned_cols=59  Identities=34%  Similarity=0.465  Sum_probs=51.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-----ChHHHHHHHHHHHHHHHcCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-----NENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-----~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      ..++|+||||+++++.++||++||+|++++|||+.....     .+.+.++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999964321     25678999999999999985


No 60 
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.28  E-value=3.1e-12  Score=110.97  Aligned_cols=71  Identities=32%  Similarity=0.461  Sum_probs=63.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCccc---CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAK---SQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .-|+||||||..+++..+||++||+|..++||||.++   ....+-++.+++|++||+.|.|...|..|-.+..
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            3489999999999999999999999999999999886   4456778899999999999999999999987643


No 61 
>PHA02624 large T antigen; Provisional
Probab=99.27  E-value=8.5e-12  Score=112.60  Aligned_cols=60  Identities=25%  Similarity=0.430  Sum_probs=55.2

Q ss_pred             ccCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHH
Q 030733           61 PGSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADY  126 (172)
Q Consensus        61 ~~~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~Y  126 (172)
                      ..++|+||||+++|  +.++||+|||++++++|||+.      ++.+.|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg------Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG------GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC------CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            45799999999999  999999999999999999983      3457999999999999999999998


No 62 
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.26  E-value=1.6e-11  Score=94.32  Aligned_cols=59  Identities=32%  Similarity=0.467  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           73 GATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        73 ~as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      +.+..+|+++|+++++++|||+.....   ...+...+..||+||++|+||.+|+.|+..|.
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            357899999999999999999865432   23466789999999999999999999999998


No 63 
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18  E-value=5.2e-11  Score=93.84  Aligned_cols=68  Identities=29%  Similarity=0.399  Sum_probs=60.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      -+.|+|+||.|.++.+.++||+.||+|++.+||||+++ +.+.+...|..|.+||.+|-|+..|...+.
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            36799999999999999999999999999999999875 347888999999999999999986665443


No 64 
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.06  E-value=1.3e-10  Score=95.40  Aligned_cols=73  Identities=32%  Similarity=0.393  Sum_probs=64.6

Q ss_pred             ccCccccccCCC---CCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQT---GATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      ..|+|.+|||+.   .+.+.+|.++.++.+.+||||+............|++|++||+||+|+.+|..||.--+..
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a  117 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA  117 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccccc
Confidence            469999999986   5788999999999999999999766666778889999999999999999999999766543


No 65 
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40  E-value=3e-07  Score=74.42  Aligned_cols=56  Identities=32%  Similarity=0.692  Sum_probs=48.8

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHH-HcCCh
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYE-TLSDP  120 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~-vLsdp  120 (172)
                      ..+|.||||..+|+.++++.+|.+|++.+|||...   .+.+.++|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs---~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS---EEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC---ccccHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999643   3667789999999999 77643


No 66 
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30  E-value=9e-07  Score=63.24  Aligned_cols=50  Identities=32%  Similarity=0.403  Sum_probs=42.9

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCCh
Q 030733           65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDP  120 (172)
Q Consensus        65 YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp  120 (172)
                      -.||||.+.++.+.||+++|+++...|||+      .+....-..||||+++|...
T Consensus        59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~------GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   59 ALILGVTPSLDKDKIKEAHRRIMLANHPDR------GGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHhCCCccccHHHHHHHHHHHHHcCCCcC------CCCHHHHHHHHHHHHHHhcc
Confidence            469999999999999999999999999997      34444567899999999753


No 67 
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.25  E-value=1.3e-06  Score=82.95  Aligned_cols=53  Identities=32%  Similarity=0.423  Sum_probs=45.6

Q ss_pred             ccCccccccCCCC----CCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcC
Q 030733           61 PGSLYEILGIQTG----ATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS  118 (172)
Q Consensus        61 ~~~~YevLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLs  118 (172)
                      ..+-|+||.|+-+    -..+.||++|++|+.+|||||+     ++-.++|..||+||+.|.
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN-----PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN-----PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHHHHHHHHH
Confidence            4467999999863    3458999999999999999996     466789999999999998


No 68 
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.24  E-value=1.9e-06  Score=65.61  Aligned_cols=77  Identities=29%  Similarity=0.533  Sum_probs=61.5

Q ss_pred             ccCccccccCCC--CCCHHHHHHHHHHHHHhhCCCCcccC---CChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcC
Q 030733           61 PGSLYEILGIQT--GATCQEIKTAYRKLARVLHPDVAAKS---QNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRR  135 (172)
Q Consensus        61 ~~~~YevLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~---~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~  135 (172)
                      ..+||.+||...  ...++.++.-|....+++|||+....   ....+.+....||+||.+|.||.+|+.|-..|.+...
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~   86 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQEQ   86 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Confidence            458999998755  46777788799999999999984322   2235677889999999999999999999999986544


Q ss_pred             CC
Q 030733          136 PS  137 (172)
Q Consensus       136 ~~  137 (172)
                      .+
T Consensus        87 ~s   88 (168)
T KOG3192|consen   87 TS   88 (168)
T ss_pred             ch
Confidence            43


No 69 
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.27  E-value=0.00036  Score=61.98  Aligned_cols=47  Identities=28%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCcccCCC-----hHHHHHHHHHHHHHHHc
Q 030733           71 QTGATCQEIKTAYRKLARVLHPDVAAKSQN-----ENSAYKFMKLHEAYETL  117 (172)
Q Consensus        71 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~-----~~~~~~f~~I~~Ay~vL  117 (172)
                      ..-++.++||++||+.++.+||||......     -.+++.|..+++|++..
T Consensus       397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  397 TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            334689999999999999999999876432     23445566666666543


No 70 
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.16  E-value=0.00034  Score=54.46  Aligned_cols=56  Identities=38%  Similarity=0.525  Sum_probs=47.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-----ChHHHHHHHHHHHHHHHc
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-----NENSAYKFMKLHEAYETL  117 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-----~~~~~~~f~~I~~Ay~vL  117 (172)
                      .+.|.+||+.......+|+++|+++...+|||+.....     .+...+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999855332     145667889999999864


No 71 
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10  E-value=0.00056  Score=53.25  Aligned_cols=69  Identities=29%  Similarity=0.476  Sum_probs=54.6

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCCh---HHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNE---NSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~---~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      +++.++|+....  ..+.++..|+.+.+.+|||+.......   ...+.+..++.||.+|.||.+|+.|-..+.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            455666666643  567899999999999999986543322   244678899999999999999999998887


No 72 
>PF03656 Pam16:  Pam16;  InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.14  E-value=0.0089  Score=44.42  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=39.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChh
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK  121 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~  121 (172)
                      .-..||+|++..+.++|.+.|.+|....+|++      .+....-..|..|.+.|....
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k------GGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSK------GGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCC------TS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCc------CCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999996      466667778999999887544


No 73 
>PF11833 DUF3353:  Protein of unknown function (DUF3353);  InterPro: IPR021788  This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. 
Probab=92.34  E-value=0.32  Score=38.67  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcC
Q 030733           71 QTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS  118 (172)
Q Consensus        71 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLs  118 (172)
                      +++|+.|||.+|+.++..+|--|.          +.-..|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~----------~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDE----------KSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHH
Confidence            478999999999999999996662          23466899999543


No 74 
>PF13446 RPT:  A repeated domain in UCH-protein
Probab=89.68  E-value=0.74  Score=29.39  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=24.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLAR   88 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~   88 (172)
                      +-|++|||+++.+.+.|..+|+....
T Consensus         6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    6 EAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            46999999999999999999999888


No 75 
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.59  E-value=0.49  Score=40.15  Aligned_cols=57  Identities=26%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHhhCCCCccc--CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           74 ATCQEIKTAYRKLARVLHPDVAAK--SQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        74 as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ++..+|..+|+..++.+||++...  .......+.+++|.+||.+|.+...|...|...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            467789999999999999997431  112245567999999999999866655555554


No 76 
>PF14687 DUF4460:  Domain of unknown function (DUF4460)
Probab=82.00  E-value=2.5  Score=30.64  Aligned_cols=47  Identities=15%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCcccCC--ChHHHHHHHHHHHHHHHcCC
Q 030733           73 GATCQEIKTAYRKLARVLHPDVAAKSQ--NENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        73 ~as~~eIk~ayr~l~~~~HPDk~~~~~--~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      ..+..+++.+.|...+++|||......  ...-++-++.|+.-.+.|..
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            345678999999999999999765422  12233445555555444443


No 77 
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=79.67  E-value=7.6  Score=26.24  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=28.3

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVA   95 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~   95 (172)
                      +|.-+++|+.+-++++||+.+-++.++++.-...
T Consensus         3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~   36 (88)
T COG5552           3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTH   36 (88)
T ss_pred             cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence            4667899999999999999999988888754443


No 78 
>PF10041 DUF2277:  Uncharacterized conserved protein (DUF2277);  InterPro: IPR018735  Members of this family of hypothetical bacterial proteins have no known function. 
Probab=71.62  E-value=20  Score=24.21  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHH-HHHHHHHHHHHHcCC
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSD  119 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~-~~f~~I~~Ay~vLsd  119 (172)
                      +|--.+.|+.|.++.+||..|-.+.++++.--..+.....++. .....|..+-..|.|
T Consensus         3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~   61 (78)
T PF10041_consen    3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD   61 (78)
T ss_pred             cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3555677899999999999999999999875544332223332 334456666555544


No 79 
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.31  E-value=5.4  Score=29.55  Aligned_cols=50  Identities=26%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCC
Q 030733           64 LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        64 ~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      --.||+|+...+.++|.+.|..|-....+.|      .+....-..|-.|.+.|-.
T Consensus        61 a~qILnV~~~ln~eei~k~yehLFevNdksk------GGSFYLQSKVfRAkErld~  110 (132)
T KOG3442|consen   61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSK------GGSFYLQSKVFRAKERLDE  110 (132)
T ss_pred             HhhHhCCCCCCCHHHHHHHHHHHHhccCccc------CcceeehHHHHHHHHHHHH
Confidence            4589999999999999999999999888775      3333344456667666653


No 80 
>PF07709 SRR:  Seven Residue Repeat;  InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=60.10  E-value=6.2  Score=17.79  Aligned_cols=13  Identities=62%  Similarity=0.889  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHcC
Q 030733          106 KFMKLHEAYETLS  118 (172)
Q Consensus       106 ~f~~I~~Ay~vLs  118 (172)
                      .|..|..||+.|+
T Consensus         2 ~~~~V~~aY~~l~   14 (14)
T PF07709_consen    2 KFEKVKNAYEQLS   14 (14)
T ss_pred             cHHHHHHHHHhcC
Confidence            4677888888774


No 81 
>PF12574 120_Rick_ant:  120 KDa Rickettsia surface antigen;  InterPro: IPR020954 This domain family is found in bacteria, and is approximately 40 amino acids in length. This family is a Rickettsia surface antigen of 120 kDa which may be used as an antigen for immune response against the bacterial species [].
Probab=53.10  E-value=5.2  Score=32.78  Aligned_cols=80  Identities=19%  Similarity=0.367  Sum_probs=40.9

Q ss_pred             HHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCCC-CCCCCCCCCCCCCCCCC-CCC-CC
Q 030733           84 RKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSG-SPFAVSGVANTMATSSN-SRF-CA  160 (172)
Q Consensus        84 r~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~~-~~~~~s~~~~~~~~~~~-~~~-~~  160 (172)
                      |.+....+||...+...++..+.|..      .|+||..|..+|..+........ .....-|..+-.++.+. .+| +|
T Consensus         3 k~~~a~~n~~Lae~~~kee~dk~l~~------F~~n~~~r~~i~~a~e~~e~K~~le~iei~GY~Ni~~s~sa~~~y~gg   76 (255)
T PF12574_consen    3 KDLFALTNPELAEQKRKEEDDKKLRD------FLGNPANRELIDKALESPETKKKLEGIEIAGYKNIHSSYSAANGYQGG   76 (255)
T ss_pred             hHhhhhcChHHHHhhhhhhhhhHHHH------HhcChhhHHHHHHhhcCHHHHHHHHhhhhhhhhhhhhhhhhhhhccCC
Confidence            44555667775433222233333432      35899999999988753321111 01112223333333333 233 45


Q ss_pred             CCCCCCccc
Q 030733          161 YSRRTWETD  169 (172)
Q Consensus       161 ~~~~~we~~  169 (172)
                      |..-.||.+
T Consensus        77 Fk~~~W~~~   85 (255)
T PF12574_consen   77 FKPMQWENQ   85 (255)
T ss_pred             ccccccccc
Confidence            899999976


No 82 
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=51.09  E-value=50  Score=21.22  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             HHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 030733           81 TAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRT  129 (172)
Q Consensus        81 ~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~  129 (172)
                      +..+...+.-||+.       ...+..+.|.+.|..|++..+...++..
T Consensus        14 ~~~r~~~~~~~p~~-------~~~eisk~l~~~Wk~ls~~eK~~y~~~a   55 (72)
T cd01388          14 KRHRRKVLQEYPLK-------ENRAISKILGDRWKALSNEEKQPYYEEA   55 (72)
T ss_pred             HHHHHHHHHHCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566777788984       3456778899999999987766555443


No 83 
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=47.06  E-value=12  Score=31.13  Aligned_cols=20  Identities=40%  Similarity=0.753  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHcC-----ChhHH
Q 030733          104 AYKFMKLHEAYETLS-----DPKKR  123 (172)
Q Consensus       104 ~~~f~~I~~Ay~vLs-----dp~~R  123 (172)
                      ..++++||||||+|+     ||..|
T Consensus       127 RRRLkKVNEAFE~LKRrT~~NPNQR  151 (284)
T KOG3960|consen  127 RRRLKKVNEAFETLKRRTSSNPNQR  151 (284)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCcccc
Confidence            357899999999986     66544


No 84 
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=38.37  E-value=94  Score=18.99  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=27.9

Q ss_pred             HHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 030733           82 AYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRT  129 (172)
Q Consensus        82 ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~  129 (172)
                      ..+..++.-||+.       ...+..+.|.+.|..|++..+....+..
T Consensus        14 ~~r~~~~~~~p~~-------~~~~i~~~~~~~W~~ls~~eK~~y~~~a   54 (66)
T cd01390          14 EQRPKLKKENPDA-------SVTEVTKILGEKWKELSEEEKKKYEEKA   54 (66)
T ss_pred             HHHHHHHHHCcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455666778873       4556788999999999976554444433


No 85 
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=37.04  E-value=97  Score=18.74  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           80 KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        80 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      ...++...+.-||+.       ...+..+.|.+.|..|++..+....+.
T Consensus        12 ~~~~~~~~~~~~~~~-------~~~~i~~~~~~~W~~l~~~~k~~y~~~   53 (66)
T cd00084          12 SQEHRAEVKAENPGL-------SVGEISKILGEMWKSLSEEEKKKYEEK   53 (66)
T ss_pred             HHHHHHHHHHHCcCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            455666777788883       345677889999999997655444443


No 86 
>PF12434 Malate_DH:  Malate dehydrogenase enzyme 
Probab=34.18  E-value=50  Score=17.84  Aligned_cols=17  Identities=18%  Similarity=0.225  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHhhCC
Q 030733           76 CQEIKTAYRKLARVLHP   92 (172)
Q Consensus        76 ~~eIk~ayr~l~~~~HP   92 (172)
                      .++.|...|+.++.||-
T Consensus        10 ~~~~r~~lR~AALeYHe   26 (28)
T PF12434_consen   10 KEDKRAQLRQAALEYHE   26 (28)
T ss_pred             hHHHHHHHHHHHHHhcc
Confidence            47889999999999994


No 87 
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=33.82  E-value=1.3e+02  Score=19.39  Aligned_cols=42  Identities=7%  Similarity=-0.016  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           80 KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        80 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      .+.++..++.-||+.       ...+..+.|.+.|..|++.++...++.
T Consensus        13 ~~~~r~~~~~~~p~~-------~~~eisk~~g~~Wk~ls~eeK~~y~~~   54 (77)
T cd01389          13 RQDKHAQLKTENPGL-------TNNEISRIIGRMWRSESPEVKAYYKEL   54 (77)
T ss_pred             HHHHHHHHHHHCCCC-------CHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence            456677788889984       345677889999999997665544443


No 88 
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=31.30  E-value=86  Score=27.03  Aligned_cols=44  Identities=18%  Similarity=0.226  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 030733           79 IKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRT  129 (172)
Q Consensus        79 Ik~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~  129 (172)
                      -.+..|+.+.+-.||.       ...++.|+|.+-|+.|++.+||-.+|..
T Consensus        73 WSq~~RRkma~qnP~m-------HNSEISK~LG~~WK~Lse~EKrPFi~EA  116 (331)
T KOG0527|consen   73 WSQGQRRKLAKQNPKM-------HNSEISKRLGAEWKLLSEEEKRPFVDEA  116 (331)
T ss_pred             hhHHHHHHHHHhCcch-------hhHHHHHHHHHHHhhcCHhhhccHHHHH
Confidence            3567788888888985       4456789999999999999999888843


No 89 
>PF03206 NifW:  Nitrogen fixation protein NifW;  InterPro: IPR004893  Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=30.20  E-value=1.6e+02  Score=21.02  Aligned_cols=65  Identities=17%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             ccCccccccCCCCC-----CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHc--CChhHHHHH
Q 030733           61 PGSLYEILGIQTGA-----TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL--SDPKKRADY  126 (172)
Q Consensus        61 ~~~~YevLgv~~~a-----s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vL--sdp~~R~~Y  126 (172)
                      ..+|++.|||+-+.     ..=.|-+.|.......++. ....+.+.-...-..+.+||+..  ++|..-+.+
T Consensus        14 AEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~-~~~~e~~~~~~~R~~L~~AY~dFv~S~p~~ekvF   85 (105)
T PF03206_consen   14 AEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFA-PGLSEEEDWAAYRRALERAYQDFVTSTPLEEKVF   85 (105)
T ss_pred             HHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhcCChhhhHHH
Confidence            35799999998764     3445788888888888664 11111122223344688899854  455444443


No 90 
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=28.78  E-value=1e+02  Score=22.08  Aligned_cols=63  Identities=17%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             ccCccccccCCCCCC-----HHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHc--CChhHH
Q 030733           61 PGSLYEILGIQTGAT-----CQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL--SDPKKR  123 (172)
Q Consensus        61 ~~~~YevLgv~~~as-----~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vL--sdp~~R  123 (172)
                      ..+|++.|||+-+-.     .=-|-+.|.......+.+.-...+.+.....-..+.+||+..  ++|..-
T Consensus        14 AEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~~Stp~~e   83 (105)
T PRK14102         14 AEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFLTSTPLEQ   83 (105)
T ss_pred             HHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHccCChhhh
Confidence            358999999987643     345778888887775544311111122233344688899854  444433


No 91 
>PF15178 TOM_sub5:  Mitochondrial import receptor subunit TOM5 homolog
Probab=28.32  E-value=1e+02  Score=18.89  Aligned_cols=23  Identities=22%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             cccccCCCCCCHHHHHHHHHHHH
Q 030733           65 YEILGIQTGATCQEIKTAYRKLA   87 (172)
Q Consensus        65 YevLgv~~~as~~eIk~ayr~l~   87 (172)
                      +.+=|+.|..+++|.|+.-|+-+
T Consensus         2 ~~~egl~pk~DPeE~k~kmR~dv   24 (51)
T PF15178_consen    2 FRIEGLGPKMDPEEMKRKMREDV   24 (51)
T ss_pred             cccccCCCCCCHHHHHHHHHHHH
Confidence            45678999999999998877644


No 92 
>PF00505 HMG_box:  HMG (high mobility group) box;  InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=27.19  E-value=1.6e+02  Score=18.15  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHH
Q 030733           80 KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRAD  125 (172)
Q Consensus        80 k~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~  125 (172)
                      .+.++...+..||+.       ...+..+.|.+.|..|++.++...
T Consensus        12 ~~~~~~~~k~~~p~~-------~~~~i~~~~~~~W~~l~~~eK~~y   50 (69)
T PF00505_consen   12 CKEKRAKLKEENPDL-------SNKEISKILAQMWKNLSEEEKAPY   50 (69)
T ss_dssp             HHHHHHHHHHHSTTS-------THHHHHHHHHHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc-------ccccchhhHHHHHhcCCHHHHHHH
Confidence            445566677779984       356678889999999986544433


No 93 
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17  E-value=59  Score=30.30  Aligned_cols=28  Identities=14%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhhCCCC
Q 030733           67 ILGIQTGATCQEIKTAYRKLARVLHPDV   94 (172)
Q Consensus        67 vLgv~~~as~~eIk~ayr~l~~~~HPDk   94 (172)
                      .|-++..+..++||.++.++.+.|||.|
T Consensus       394 ~~~~Ps~~~mEqvk~k~~~m~r~YSP~k  421 (651)
T KOG2320|consen  394 FLSTPSDVLMEQVKQKFTAMQRRYSPSK  421 (651)
T ss_pred             eccCCcHHHHHHHHHHHHHHHHhhChHH
Confidence            3444556778899999999999999996


No 94 
>PF12725 DUF3810:  Protein of unknown function (DUF3810);  InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=25.09  E-value=78  Score=26.94  Aligned_cols=59  Identities=24%  Similarity=0.265  Sum_probs=37.9

Q ss_pred             cCccccccCCC-CCCHHHHHHHHHHHHHhh-------CCCCcccCC-ChHHHHHHHHHHHHHHHcCCh
Q 030733           62 GSLYEILGIQT-GATCQEIKTAYRKLARVL-------HPDVAAKSQ-NENSAYKFMKLHEAYETLSDP  120 (172)
Q Consensus        62 ~~~YevLgv~~-~as~~eIk~ayr~l~~~~-------HPDk~~~~~-~~~~~~~f~~I~~Ay~vLsdp  120 (172)
                      .++++-|||.. ..+.+|+++-...++.+.       ++|...... .....+.++.+.++|+.|.+.
T Consensus        82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~  149 (318)
T PF12725_consen   82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER  149 (318)
T ss_pred             cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence            35678899988 778888877776655544       333211101 123467788899999988753


No 95 
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=24.97  E-value=33  Score=30.73  Aligned_cols=24  Identities=8%  Similarity=0.202  Sum_probs=18.7

Q ss_pred             CccCccccccCCCCCCHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAY   83 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ay   83 (172)
                      ...++|.||++.-+...+|..+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~   97 (444)
T PLN00112         74 TKKECYGVFCLTYDLKAEEETKSW   97 (444)
T ss_pred             cCCCceEEEEEEEecccchhhhcC
Confidence            356899999999998888765544


No 96 
>PF08447 PAS_3:  PAS fold;  InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.  This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=24.88  E-value=12  Score=24.22  Aligned_cols=28  Identities=36%  Similarity=0.752  Sum_probs=20.0

Q ss_pred             cCccccccCCCCCCHHHH-HHHHHHHHHhhCCC
Q 030733           62 GSLYEILGIQTGATCQEI-KTAYRKLARVLHPD   93 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eI-k~ayr~l~~~~HPD   93 (172)
                      .+++++||+++    +++ +.....+....|||
T Consensus         6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpd   34 (91)
T PF08447_consen    6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPD   34 (91)
T ss_dssp             THHHHHHTS-H----HHHTCBEHHHHHHHB-TT
T ss_pred             HHHHHHhCCCH----HHhccCCHHHHHhhcCHH
Confidence            46889999865    566 56677788899999


No 97 
>PF14606 Lipase_GDSL_3:  GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.69  E-value=91  Score=24.39  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=18.4

Q ss_pred             cccCCCCCCHHHHHHHH---HHHHHhhCCCC
Q 030733           67 ILGIQTGATCQEIKTAY---RKLARVLHPDV   94 (172)
Q Consensus        67 vLgv~~~as~~eIk~ay---r~l~~~~HPDk   94 (172)
                      +|.+-++.+.++|+++.   -+..+.-|||+
T Consensus        64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~t   94 (178)
T PF14606_consen   64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDT   94 (178)
T ss_dssp             EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS
T ss_pred             EEEeecCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            55555667777777765   45666779997


No 98 
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.97  E-value=1.8e+02  Score=22.78  Aligned_cols=46  Identities=24%  Similarity=0.331  Sum_probs=29.6

Q ss_pred             CCCCCHHHHHHHHHH-----------HHHhhCCCCccc---------------------CCChHHHHHHHHHHHHHHH
Q 030733           71 QTGATCQEIKTAYRK-----------LARVLHPDVAAK---------------------SQNENSAYKFMKLHEAYET  116 (172)
Q Consensus        71 ~~~as~~eIk~ayr~-----------l~~~~HPDk~~~---------------------~~~~~~~~~f~~I~~Ay~v  116 (172)
                      .+.++.+++..+...           .+..-|||..+.                     ...+...++|..||+||..
T Consensus        41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~  118 (176)
T COG3195          41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVE  118 (176)
T ss_pred             CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence            566677777666643           345679997421                     1124556789999999963


No 99 
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.09  E-value=73  Score=22.38  Aligned_cols=22  Identities=32%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             cccCCCCCCHHHHHHHHHHHHH
Q 030733           67 ILGIQTGATCQEIKTAYRKLAR   88 (172)
Q Consensus        67 vLgv~~~as~~eIk~ayr~l~~   88 (172)
                      +|-|.++|+..+||+|..++--
T Consensus        25 vF~V~~~AtK~~IK~AvE~lF~   46 (94)
T COG0089          25 VFIVDPDATKPEIKAAVEELFG   46 (94)
T ss_pred             EEEECCCCCHHHHHHHHHHHhC
Confidence            6789999999999999987743


No 100
>COG2879 Uncharacterized small protein [Function unknown]
Probab=22.28  E-value=1.9e+02  Score=18.88  Aligned_cols=16  Identities=31%  Similarity=0.464  Sum_probs=12.3

Q ss_pred             HHHHHHHHhhCCCCcc
Q 030733           81 TAYRKLARVLHPDVAA   96 (172)
Q Consensus        81 ~ayr~l~~~~HPDk~~   96 (172)
                      ..|.+-+++.|||+.+
T Consensus        26 dnYVehmr~~hPd~p~   41 (65)
T COG2879          26 DNYVEHMRKKHPDKPP   41 (65)
T ss_pred             HHHHHHHHHhCcCCCc
Confidence            3577888999999743


No 101
>PF11126 Phage_DsbA:  Transcriptional regulator DsbA;  InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=21.09  E-value=1.5e+02  Score=19.65  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=22.6

Q ss_pred             HHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHc
Q 030733           81 TAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL  117 (172)
Q Consensus        81 ~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vL  117 (172)
                      +-|.++.+.||-+-     .+..++.-..|.+.|+.+
T Consensus        35 k~Fnkl~~lyHk~~-----Re~fE~e~ee~~elYD~~   66 (69)
T PF11126_consen   35 KMFNKLLKLYHKQE-----REEFEAENEEVVELYDAV   66 (69)
T ss_pred             HHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH
Confidence            45788999999872     245555666777888765


No 102
>PF10475 DUF2450:  Protein of unknown function N-terminal domain (DUF2450)  ;  InterPro: IPR019515  This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known. 
Probab=20.31  E-value=1.2e+02  Score=25.12  Aligned_cols=34  Identities=26%  Similarity=0.562  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChh
Q 030733           76 CQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK  121 (172)
Q Consensus        76 ~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~  121 (172)
                      .+.|...+.+++..+.|+            .|..|.+||..|++..
T Consensus       181 ~~~ld~~l~~~~~~Fd~~------------~Y~~v~~AY~lLgk~~  214 (291)
T PF10475_consen  181 EEQLDSDLSKVCQDFDPD------------KYSKVQEAYQLLGKTQ  214 (291)
T ss_pred             HHHHHHHHHHHHHhCCHH------------HHHHHHHHHHHHhhhH
Confidence            344566666666666666            5788999999999653


Done!