BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030735
MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE
ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM
FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTST

High Scoring Gene Products

Symbol, full name Information P value
RBCS1B
Rubisco small subunit 1B
protein from Arabidopsis thaliana 5.4e-47
RBCS2B
Rubisco small subunit 2B
protein from Arabidopsis thaliana 6.9e-47
RBCS
Ribulose bisphosphate carboxylase small chain, chloroplastic
protein from Nicotiana tabacum 1.4e-46
RBCS3B
Rubisco small subunit 3B
protein from Arabidopsis thaliana 2.3e-46
RBCS1A
ribulose bisphosphate carboxylase small chain 1A
protein from Arabidopsis thaliana 3.8e-46
rbcS
Ribulose bisphosphate carboxylase small chain
protein from Oryza sativa 6.4e-44

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030735
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2177406 - symbol:RBCS1B "Rubisco small subunit...   492  5.4e-47   1
TAIR|locus:2177416 - symbol:RBCS2B "Rubisco small subunit...   491  6.9e-47   1
UNIPROTKB|P69249 - symbol:RBCS "Ribulose bisphosphate car...   488  1.4e-46   1
TAIR|locus:2177426 - symbol:RBCS3B "Rubisco small subunit...   486  2.3e-46   1
TAIR|locus:2033686 - symbol:RBCS1A "ribulose bisphosphate...   484  3.8e-46   1
UNIPROTKB|Q36688 - symbol:rbcS "Ribulose bisphosphate car...   463  6.4e-44   1


>TAIR|locus:2177406 [details] [associations]
            symbol:RBCS1B "Rubisco small subunit 1B" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009573 "chloroplast ribulose bisphosphate carboxylase complex"
            evidence=ISS] [GO:0015977 "carbon fixation" evidence=ISS]
            [GO:0016984 "ribulose-bisphosphate carboxylase activity"
            evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0009637 "response to blue
            light" evidence=IEP] [GO:0010114 "response to red light"
            evidence=IEP] [GO:0010218 "response to far red light" evidence=IEP]
            InterPro:IPR000894 Pfam:PF00101 EMBL:AB005248 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0016020 GO:GO:0048046
            GO:GO:0004497 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
            GO:GO:0010114 GO:GO:0031969 GO:GO:0009579 GO:GO:0009853
            GO:GO:0019253 UniGene:At.39706 UniGene:At.46639 GO:GO:0016984
            UniGene:At.25361 UniGene:At.49098 UniGene:At.70032 UniGene:At.70053
            eggNOG:COG4451 HOGENOM:HOG000141332 KO:K01602 ProtClustDB:PLN02289
            Gene3D:3.30.190.10 InterPro:IPR024681 InterPro:IPR024680
            Pfam:PF12338 PRINTS:PR00152 SMART:SM00961 SUPFAM:SSF55239
            EMBL:X14564 EMBL:AF410283 EMBL:AY143814 IPI:IPI00521186 PIR:S03717
            RefSeq:NP_198659.1 UniGene:At.25577 UniGene:At.73308
            ProteinModelPortal:P10796 SMR:P10796 IntAct:P10796 STRING:P10796
            World-2DPAGE:0003:P10796 PaxDb:P10796 PRIDE:P10796
            EnsemblPlants:AT5G38430.1 GeneID:833830 KEGG:ath:AT5G38430
            TAIR:At5g38430 InParanoid:P10796 OMA:APTVMAS PhylomeDB:P10796
            BioCyc:MetaCyc:AT5G38430-MONOMER Genevestigator:P10796
            GermOnline:AT5G38430 Uniprot:P10796
        Length = 181

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 93/175 (53%), Positives = 123/175 (70%)

Query:     2 SASIFTAPVAGS---GYLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINN 56
             SA++ T+P   +    + GLK  S A  PV  K +   +S T SNG +  CMK W PI  
Sbjct:     8 SAAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGK 64

Query:    57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTM 115
             KKFE LSYLP L+D  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTM
Sbjct:    65 KKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTM 124

Query:   116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
             WKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+  KP + T
Sbjct:   125 WKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>TAIR|locus:2177416 [details] [associations]
            symbol:RBCS2B "Rubisco small subunit 2B" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009573 "chloroplast ribulose bisphosphate carboxylase complex"
            evidence=ISS] [GO:0015977 "carbon fixation" evidence=ISS]
            [GO:0016984 "ribulose-bisphosphate carboxylase activity"
            evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0048046
            "apoplast" evidence=IDA] [GO:0009637 "response to blue light"
            evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
            [GO:0010218 "response to far red light" evidence=IEP]
            InterPro:IPR000894 Pfam:PF00101 EMBL:AB005248 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0016020 GO:GO:0048046
            GO:GO:0004497 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
            GO:GO:0010114 GO:GO:0009579 GO:GO:0009853 GO:GO:0022626
            GO:GO:0019253 UniGene:At.46639 GO:GO:0016984 UniGene:At.49098
            UniGene:At.70032 UniGene:At.70053 HOGENOM:HOG000141332 KO:K01602
            ProtClustDB:PLN02289 Gene3D:3.30.190.10 InterPro:IPR024681
            InterPro:IPR024680 Pfam:PF12338 PRINTS:PR00152 SMART:SM00961
            SUPFAM:SSF55239 EMBL:X14564 EMBL:AY059939 EMBL:AY062437
            EMBL:AY062458 EMBL:AY062543 EMBL:AY093288 EMBL:BT002094
            EMBL:BT002554 EMBL:BT003356 EMBL:Z18199 IPI:IPI00523477 PIR:S03718
            RefSeq:NP_198658.1 UniGene:At.67185 UniGene:At.75410
            ProteinModelPortal:P10797 SMR:P10797 IntAct:P10797 STRING:P10797
            EnsemblPlants:AT5G38420.1 GeneID:833829 KEGG:ath:AT5G38420
            TAIR:At5g38420 InParanoid:P10797 OMA:SIICINS PhylomeDB:P10797
            BioCyc:MetaCyc:AT5G38420-MONOMER Genevestigator:P10797
            GermOnline:AT5G38420 Uniprot:P10797
        Length = 181

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 93/175 (53%), Positives = 122/175 (69%)

Query:     2 SASIFTAPVAGS---GYLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINN 56
             S ++ T+P   +    + GLK  S A  PV  K +   +S T SNG +  CMK W PI  
Sbjct:     8 STAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGK 64

Query:    57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTM 115
             KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTM
Sbjct:    65 KKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTM 124

Query:   116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
             WKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+  KP + T
Sbjct:   125 WKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>UNIPROTKB|P69249 [details] [associations]
            symbol:RBCS "Ribulose bisphosphate carboxylase small chain,
            chloroplastic" species:4097 "Nicotiana tabacum" [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000894 Pfam:PF00101
            GO:GO:0009507 GO:GO:0004497 GO:GO:0009853 GO:GO:0015979
            GO:GO:0015977 GO:GO:0016984 Gene3D:3.30.190.10 InterPro:IPR024681
            InterPro:IPR024680 Pfam:PF12338 PRINTS:PR00152 SUPFAM:SSF55239
            EMBL:X02353 EMBL:M32419 PIR:A22934 PDB:1EJ7 PDB:1RLC PDB:1RLD
            PDB:3RUB PDB:4RUB PDBsum:1EJ7 PDBsum:1RLC PDBsum:1RLD PDBsum:3RUB
            PDBsum:4RUB ProteinModelPortal:P69249 SMR:P69249 DIP:DIP-40635N
            IntAct:P69249 MINT:MINT-1176585 SABIO-RK:P69249
            EvolutionaryTrace:P69249 Uniprot:P69249
        Length = 180

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 87/155 (56%), Positives = 116/155 (74%)

Query:    15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
             + GLK  S A  PV  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + 
Sbjct:    26 FTGLK--SAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQ 82

Query:    73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
             +  E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L 
Sbjct:    83 LLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLA 142

Query:   132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
             E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   143 EVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177


>TAIR|locus:2177426 [details] [associations]
            symbol:RBCS3B "Rubisco small subunit 3B" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009573 "chloroplast ribulose bisphosphate carboxylase complex"
            evidence=ISS] [GO:0015977 "carbon fixation" evidence=ISS]
            [GO:0016984 "ribulose-bisphosphate carboxylase activity"
            evidence=ISS] [GO:0005618 "cell wall" evidence=IDA] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0009637 "response to blue light" evidence=IEP] [GO:0010114
            "response to red light" evidence=IEP] [GO:0010218 "response to far
            red light" evidence=IEP] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0015979 "photosynthesis" evidence=IMP]
            [GO:0080158 "chloroplast ribulose bisphosphate carboxylase complex
            biogenesis" evidence=IMP] InterPro:IPR000894 Pfam:PF00101
            EMBL:AB005248 EMBL:CP002688 GO:GO:0005618 GO:GO:0009570
            GO:GO:0016020 GO:GO:0048046 GO:GO:0004497 GO:GO:0009941
            GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0009579
            GO:GO:0009853 GO:GO:0022626 GO:GO:0015979 UniGene:At.24772
            GO:GO:0015977 UniGene:At.46639 GO:GO:0016984 UniGene:At.49098
            UniGene:At.70032 UniGene:At.70053 eggNOG:COG4451
            HOGENOM:HOG000141332 KO:K01602 ProtClustDB:PLN02289 GO:GO:0080158
            Gene3D:3.30.190.10 InterPro:IPR024681 InterPro:IPR024680
            Pfam:PF12338 PRINTS:PR00152 SMART:SM00961 SUPFAM:SSF55239
            UniGene:At.75410 UniGene:At.20381 IPI:IPI00891841
            RefSeq:NP_001119331.1 UniGene:At.49366 UniGene:At.71313
            UniGene:At.74604 UniGene:At.75674 ProteinModelPortal:B3H5S2
            SMR:B3H5S2 STRING:B3H5S2 PaxDb:B3H5S2 PRIDE:B3H5S2
            EnsemblPlants:AT5G38410.3 GeneID:833828 KEGG:ath:AT5G38410
            OMA:EVINTKH Genevestigator:B3H5S2 Uniprot:B3H5S2
        Length = 186

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 92/179 (51%), Positives = 121/179 (67%)

Query:     2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
             SA++ T+P   +    + GLK  S A  PV         ++ SNG +  CMK W PI  K
Sbjct:     8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKK 65

Query:    58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV-----GYVHRENSKMPGYYDGR 111
             KFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ EV     G+V+RE+   PGYYDGR
Sbjct:    66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGR 125

Query:   112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
             YWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+  KP + T
Sbjct:   126 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 184


>TAIR|locus:2033686 [details] [associations]
            symbol:RBCS1A "ribulose bisphosphate carboxylase small
            chain 1A" species:3702 "Arabidopsis thaliana" [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009573 "chloroplast ribulose
            bisphosphate carboxylase complex" evidence=ISS] [GO:0015977 "carbon
            fixation" evidence=ISS] [GO:0016984 "ribulose-bisphosphate
            carboxylase activity" evidence=ISS] [GO:0031977 "thylakoid lumen"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0005507 "copper
            ion binding" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0009637 "response to blue
            light" evidence=IEP] [GO:0010114 "response to red light"
            evidence=IEP] [GO:0010218 "response to far red light" evidence=IEP]
            [GO:0015979 "photosynthesis" evidence=IMP] [GO:0080158 "chloroplast
            ribulose bisphosphate carboxylase complex biogenesis" evidence=IMP]
            InterPro:IPR000894 Pfam:PF00101 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0048046 GO:GO:0004497
            GO:GO:0009409 GO:GO:0009941 GO:GO:0005507 GO:GO:0009637
            GO:GO:0010218 GO:GO:0010114 GO:GO:0031969 EMBL:AC007152
            GO:GO:0009853 GO:GO:0009535 GO:GO:0022626 GO:GO:0031977
            GO:GO:0015979 EMBL:AC004146 GO:GO:0019253 UniGene:At.46639
            GO:GO:0016984 UniGene:At.37531 EMBL:X13611 EMBL:AF325011
            EMBL:AF325004 EMBL:AF372874 EMBL:AF410291 EMBL:AY054188
            EMBL:AY054581 EMBL:AY058831 EMBL:AY059940 EMBL:AY062612
            EMBL:AY062711 EMBL:AY065101 EMBL:AY093380 EMBL:AY093388
            EMBL:AY097366 EMBL:BT000362 EMBL:BT002076 EMBL:X68342
            IPI:IPI00539020 PIR:G96694 PIR:S03720 RefSeq:NP_176880.1
            UniGene:At.12721 UniGene:At.30194 UniGene:At.49098 UniGene:At.67454
            UniGene:At.68122 UniGene:At.70032 UniGene:At.70053
            ProteinModelPortal:P10795 SMR:P10795 IntAct:P10795
            MINT:MINT-2584041 STRING:P10795 World-2DPAGE:0003:P10795
            PaxDb:P10795 PRIDE:P10795 ProMEX:P10795 EnsemblPlants:AT1G67090.1
            GeneID:843029 KEGG:ath:AT1G67090 TAIR:At1g67090 eggNOG:COG4451
            HOGENOM:HOG000141332 InParanoid:P10795 KO:K01602 OMA:AFPATRK
            PhylomeDB:P10795 ProtClustDB:PLN02289
            BioCyc:MetaCyc:AT1G67090-MONOMER Genevestigator:P10795
            GO:GO:0080158 Gene3D:3.30.190.10 InterPro:IPR024681
            InterPro:IPR024680 Pfam:PF12338 PRINTS:PR00152 SMART:SM00961
            SUPFAM:SSF55239 Uniprot:P10795
        Length = 180

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 90/175 (51%), Positives = 122/175 (69%)

Query:     2 SASIFTAPVAGS---GYLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINN 56
             SA++  +P   +    + GLK  S A  P   K +   +S T SNG +  CM+ W PI  
Sbjct:     8 SATMVASPAQATMVAPFNGLK--SSAAFPATRKANNDITSIT-SNGGRVNCMQVWPPIGK 64

Query:    57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTM 115
             KKFE LSYLP L+D  +AKE+DY+++  WIPC+EF+ E G+V+RE+   PGYYDGRYWTM
Sbjct:    65 KKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTM 124

Query:   116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
             WKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+  KP + T
Sbjct:   125 WKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>UNIPROTKB|Q36688 [details] [associations]
            symbol:rbcS "Ribulose bisphosphate carboxylase small chain"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC;ISS]
            InterPro:IPR000894 Pfam:PF00101 GO:GO:0005618 GO:GO:0009536
            GO:GO:0009570 GO:GO:0048046 GO:GO:0004497 GO:GO:0009409
            GO:GO:0009941 GO:GO:0005507 GO:GO:0009637 GO:GO:0010218
            GO:GO:0010114 GO:GO:0009853 GO:GO:0009535 GO:GO:0022626
            GO:GO:0031977 GO:GO:0015979 GO:GO:0015977 GO:GO:0016984
            Gene3D:3.30.190.10 InterPro:IPR024681 InterPro:IPR024680
            Pfam:PF12338 PRINTS:PR00152 SUPFAM:SSF55239 EMBL:L22155
            ProteinModelPortal:Q36688 SMR:Q36688 Gramene:Q36688
            Genevestigator:Q36688 Uniprot:Q36688
        Length = 169

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 84/153 (54%), Positives = 112/153 (73%)

Query:    15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINN-KKFEALSYLPSLSDDSI 73
             + GLK T  A +PV      S   VSNG + RCM+ W PI   KKFE LSYLP L+ + +
Sbjct:    11 FQGLKST--AGMPVARRSNSSFGNVSNGGRIRCMQVW-PIEGIKKFETLSYLPPLTVEDL 67

Query:    74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
              K+I+Y+L+  W+PCLEF +VG+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct:    68 LKQIEYLLRSKWVPCLEFSKVGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 127

Query:   134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
             +E KKAYP+A++R + F+N +Q Q +SF+  KP
Sbjct:   128 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       172   0.00093  108 3  11 22  0.42    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.85u 0.09s 16.94t   Elapsed:  00:00:01
  Total cpu time:  16.86u 0.09s 16.95t   Elapsed:  00:00:01
  Start:  Thu May  9 18:34:32 2013   End:  Thu May  9 18:34:33 2013

Back to top