BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030735
(172 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225446032|ref|XP_002270117.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic [Vitis vinifera]
gi|297735404|emb|CBI17844.3| unnamed protein product [Vitis vinifera]
Length = 169
Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 148/169 (87%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
M+A I + PV GY+GLKP L P KDS+AWS KTVSNGSKT CMKTWNPINNKKFE
Sbjct: 1 MAAGILSGPVTSFGYVGLKPHQPKLFPAKDSVAWSRKTVSNGSKTHCMKTWNPINNKKFE 60
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
LSYLP LSDDSIAKEIDYMLKKGWIPCLEFDEVGYV R+NS++PGYYDGRYWT+WKLPM
Sbjct: 61 TLSYLPPLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVFRKNSQIPGYYDGRYWTLWKLPM 120
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
FGCND+SQ+LNEI ECKK YPNAYIRCLAF+N+ QGQCM+F+IQKPT +
Sbjct: 121 FGCNDASQVLNEIHECKKTYPNAYIRCLAFDNEHQGQCMAFVIQKPTCS 169
>gi|388492688|gb|AFK34410.1| unknown [Lotus japonicus]
Length = 173
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 146/172 (84%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
MSA FTA VAG+G++GLK S L PV W SKT SNGSKT CMKTWNPINN+KFE
Sbjct: 1 MSAGTFTALVAGAGFVGLKSNSSNLYPVTGFNEWRSKTTSNGSKTLCMKTWNPINNRKFE 60
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
LSYLP L+D+SIAKE+DYMLKKGWIPCLEFDE+G++ RENS+MPGYYDGRYWT+WKLPM
Sbjct: 61 TLSYLPPLTDESIAKEVDYMLKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLPM 120
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTST 172
FGCNDSSQ+LNEIQECK+AYPNAYIRC+AF+N + Q M+F+IQKP T+T
Sbjct: 121 FGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANTTT 172
>gi|388498620|gb|AFK37376.1| unknown [Lotus japonicus]
Length = 173
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 125/172 (72%), Positives = 145/172 (84%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
MSA FTA VAG+G++GLK S L PV W SKT SNGSKT CMKTWNPINN+KFE
Sbjct: 1 MSAGTFTALVAGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFE 60
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
LSYLP L+D+SIAKE+DYMLKKGWIPCLEFDE+G++ RENS+MPGYYDGRYWT+WKLPM
Sbjct: 61 TLSYLPPLTDESIAKEVDYMLKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLPM 120
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTST 172
F CNDSSQ+LNEIQECK+AYPNAYIRC+AF+N + Q M+F+IQKP T+T
Sbjct: 121 FDCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANTTT 172
>gi|357479619|ref|XP_003610095.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
gi|355511150|gb|AES92292.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
gi|388491552|gb|AFK33842.1| unknown [Medicago truncatula]
Length = 173
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/172 (75%), Positives = 142/172 (82%), Gaps = 1/172 (0%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKD-SIAWSSKTVSNGSKTRCMKTWNPINNKKF 59
MSA F APVAG G++GLK S +L P SI W KTVSNGSK CMKTWNPINNKKF
Sbjct: 1 MSAGTFAAPVAGPGFVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKF 60
Query: 60 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 119
E LSYLP LSDDSIAKEIDYMLKK W PCLEFDE G +HR NS+MPGYYDGRYWT+WKLP
Sbjct: 61 ETLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFDEFGCIHRANSQMPGYYDGRYWTLWKLP 120
Query: 120 MFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
MFGCNDSSQ+LNEI ECKK YPNAYIRCLAF+N++ Q M+F+I KPTTTT+
Sbjct: 121 MFGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQAMAFVIHKPTTTTT 172
>gi|224143693|ref|XP_002325043.1| predicted protein [Populus trichocarpa]
gi|118488515|gb|ABK96070.1| unknown [Populus trichocarpa]
gi|222866477|gb|EEF03608.1| predicted protein [Populus trichocarpa]
Length = 170
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 128/168 (76%), Positives = 144/168 (85%), Gaps = 2/168 (1%)
Query: 1 MSASIFTA-PVAGSGYLGLKPT-SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
MSA IF A VA GY GL+ +K K+S+A SS+TVSNGSKT CMKTWNPINNKK
Sbjct: 1 MSAGIFAASAVAAPGYHGLRALPTKQPFATKNSVARSSRTVSNGSKTFCMKTWNPINNKK 60
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
FEALSYLP LS+DSIAKEIDYM+KKGWIPCLEFDEVG V RE+S+MPGYYDGRYWT+WKL
Sbjct: 61 FEALSYLPPLSEDSIAKEIDYMMKKGWIPCLEFDEVGSVRREHSRMPGYYDGRYWTLWKL 120
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
PMFGC DSSQ+L EI ECKKAYP+AYIRCLAF+N+ QGQCM+F+IQKP
Sbjct: 121 PMFGCTDSSQVLEEIHECKKAYPDAYIRCLAFDNKHQGQCMAFVIQKP 168
>gi|351727062|ref|NP_001235868.1| uncharacterized protein LOC100527679 [Glycine max]
gi|255632934|gb|ACU16821.1| unknown [Glycine max]
Length = 172
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 121/172 (70%), Positives = 139/172 (80%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
MSA+ F A +AG+G++GLK S L P I W K VSNGSKT CMKTWNPINNKKFE
Sbjct: 1 MSAATFAAHIAGAGFVGLKSNSSNLCPSTGPIGWKRKIVSNGSKTYCMKTWNPINNKKFE 60
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
LSYLP LSD+SIAKEIDYMLKKGWIPCLEFDE+G V RENS MP YYDGRYWT+WKLPM
Sbjct: 61 TLSYLPPLSDESIAKEIDYMLKKGWIPCLEFDELGCVRRENSHMPEYYDGRYWTLWKLPM 120
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTST 172
F C+DSSQ+L EI EC++ YPNAYIRCLAF+NQ+ Q M+F++ KP TT+T
Sbjct: 121 FACSDSSQVLKEIHECRRVYPNAYIRCLAFDNQRHMQSMAFIVHKPDITTTT 172
>gi|116789830|gb|ABK25403.1| unknown [Picea sitchensis]
Length = 188
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 87/139 (62%), Positives = 114/139 (82%), Gaps = 1/139 (0%)
Query: 32 IAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF 91
+ W KT +NGS+ CM+ W PINN+K+E LSYLP LS +S+ KEIDYM+ KGW+PCLEF
Sbjct: 49 LEWEEKTTTNGSRVHCMQVWPPINNRKYETLSYLPPLSQESLVKEIDYMISKGWVPCLEF 108
Query: 92 DEVGYVHRENSKM-PGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAF 150
D VG + R N M PGYYDGRYW++WKLPMFGC +S+Q+L+E++ECKKAYPNAYIRCL F
Sbjct: 109 DAVGQIQRTNGVMVPGYYDGRYWSLWKLPMFGCTNSAQVLSELEECKKAYPNAYIRCLGF 168
Query: 151 NNQKQGQCMSFLIQKPTTT 169
+N++Q QC++F++ KP+ T
Sbjct: 169 DNKRQTQCIAFIVHKPSHT 187
>gi|302819794|ref|XP_002991566.1| hypothetical protein SELMODRAFT_186173 [Selaginella moellendorffii]
gi|300140599|gb|EFJ07320.1| hypothetical protein SELMODRAFT_186173 [Selaginella moellendorffii]
Length = 178
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 120/166 (72%), Gaps = 3/166 (1%)
Query: 4 SIFTAPVAGS--GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEA 61
+ + PVA G+ GLK T+ AL K + WS KTV+NGS+ CM TW P NN +FE
Sbjct: 14 AALSTPVAPKVPGFTGLKATT-ALTANKGGLQWSQKTVANGSRVSCMLTWTPYNNPRFET 72
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
LSYLP LS D IAKEIDYML+KGW PCLEF + GYV+RE K PG YDGRYWTM+KLPMF
Sbjct: 73 LSYLPDLSADQIAKEIDYMLRKGWFPCLEFSDKGYVYRECHKSPGCYDGRYWTMYKLPMF 132
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
GC DS+Q+L EIQEC++ +P +YIR L F+ +Q QC F++ KPT
Sbjct: 133 GCQDSAQVLREIQECRREFPTSYIRVLGFDRVRQVQCAGFIVYKPT 178
>gi|302779908|ref|XP_002971729.1| hypothetical protein SELMODRAFT_147927 [Selaginella moellendorffii]
gi|300160861|gb|EFJ27478.1| hypothetical protein SELMODRAFT_147927 [Selaginella moellendorffii]
Length = 178
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/154 (62%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 14 GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
G+ GLK T+ AL K + WS KTV+NGS+ CM TW P NN +FE LSYLP LS D I
Sbjct: 26 GFTGLKATT-ALTANKGGLQWSQKTVANGSRVSCMLTWTPYNNPRFETLSYLPDLSPDQI 84
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
AKEIDYMLKKGW PCLEF + GYV+RE K PG YDGRYWTM+KLPMFGC DS+Q+L EI
Sbjct: 85 AKEIDYMLKKGWFPCLEFSDKGYVYRECHKSPGCYDGRYWTMYKLPMFGCQDSAQVLREI 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+ECKK +P ++IR L F+ +Q QC F++ KPT
Sbjct: 145 EECKKDFPTSFIRVLGFDRVRQVQCAGFIVFKPT 178
>gi|115444275|ref|NP_001045917.1| Os02g0152400 [Oryza sativa Japonica Group]
gi|51535337|dbj|BAD38596.1| putative ribulose 1,5-bisphosphate carboxylase small subunit [Oryza
sativa Japonica Group]
gi|51535980|dbj|BAD38061.1| putative ribulose 1,5-bisphosphate carboxylase small subunit [Oryza
sativa Japonica Group]
gi|113535448|dbj|BAF07831.1| Os02g0152400 [Oryza sativa Japonica Group]
gi|218190079|gb|EEC72506.1| hypothetical protein OsI_05882 [Oryza sativa Indica Group]
gi|222622186|gb|EEE56318.1| hypothetical protein OsJ_05407 [Oryza sativa Japonica Group]
Length = 183
Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 112/135 (82%)
Query: 38 TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYV 97
SNG +T CM+TWNP N+++EA+SYLP LS SI+KEI++++ KGW+PCLEFD+ G +
Sbjct: 41 AASNGFRTYCMQTWNPFTNRRYEAMSYLPPLSAKSISKEIEFIMSKGWVPCLEFDKEGEI 100
Query: 98 HRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ 157
HR NS+MPGYYDGRYWT+WKLPMFGC+D++ +L E++EC++ YP+A+IR +AF++ +Q Q
Sbjct: 101 HRSNSRMPGYYDGRYWTLWKLPMFGCSDAAAVLREVEECRREYPDAFIRLIAFDSSRQCQ 160
Query: 158 CMSFLIQKPTTTTST 172
CMSF++ KP + ++
Sbjct: 161 CMSFVVHKPPSAAAS 175
>gi|302818564|ref|XP_002990955.1| hypothetical protein SELMODRAFT_236158 [Selaginella moellendorffii]
gi|300141286|gb|EFJ07999.1| hypothetical protein SELMODRAFT_236158 [Selaginella moellendorffii]
Length = 160
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 109/140 (77%)
Query: 32 IAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF 91
I S VS+GS+ CM+ P++N +FE LSYLP LS D++A+EIDYML K WIPCLEF
Sbjct: 20 IDGSEPPVSSGSRVNCMQIVCPLSNSRFETLSYLPPLSPDNVAREIDYMLSKNWIPCLEF 79
Query: 92 DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN 151
D VG + RENS+ PGYYDGRYWT+WKLPMFGC+D +Q+L EI+ECK YPNAYIR L F+
Sbjct: 80 DHVGAISRENSREPGYYDGRYWTLWKLPMFGCSDPAQVLREIEECKSMYPNAYIRVLGFD 139
Query: 152 NQKQGQCMSFLIQKPTTTTS 171
N KQ QC+SF++QKP+ S
Sbjct: 140 NIKQVQCISFIVQKPSKKQS 159
>gi|255560434|ref|XP_002521232.1| Ribulose bisphosphate carboxylase small chain 1B, chloroplast
precursor, putative [Ricinus communis]
gi|223539597|gb|EEF41184.1| Ribulose bisphosphate carboxylase small chain 1B, chloroplast
precursor, putative [Ricinus communis]
Length = 181
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
+ SNG + +CM+ W P+ KKFE LSYLP L+D+ +AKE+DY+L+KGWIPCLEF+ E
Sbjct: 45 TSIASNGGRVQCMQVWPPLGKKKFETLSYLPDLTDEQLAKEVDYLLRKGWIPCLEFELEH 104
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+REN + PGYYDGRYWTMWKLPMFGC+DS+Q+L E+ E KKAYPN++IR + F+N++
Sbjct: 105 GFVYRENHRSPGYYDGRYWTMWKLPMFGCSDSTQVLKELDEAKKAYPNSFIRIIGFDNRR 164
Query: 155 QGQCMSFLIQKPTTTTS 171
Q QC+SF+ KPTT S
Sbjct: 165 QVQCISFIAYKPTTFNS 181
>gi|397789258|gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Aralia elata]
Length = 183
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 118/158 (74%), Gaps = 3/158 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV + + SNG + +CMK W P+ KKFE LSYLP L+++ +A
Sbjct: 28 FTGLK--STAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPPLTNEELA 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+LNE+
Sbjct: 86 KEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLNEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
+ECKK YPNA+IR + F+N +Q QC+SF+ KP ++
Sbjct: 146 EECKKEYPNAFIRIIGFDNVRQVQCISFIAFKPPQIST 183
>gi|77157637|dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Panax ginseng]
Length = 183
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 116/158 (73%), Gaps = 3/158 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV + + SNG + +CMK W P+ KKFE LSYLP L+ + ++
Sbjct: 28 FTGLK--STAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQLTQEQLS 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC DSSQ+L E+
Sbjct: 86 KEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSSQVLKEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
+ECKK YPNAYIR + F+N +Q QC+SF+ KP + ++
Sbjct: 146 EECKKEYPNAYIRIIGFDNVRQVQCISFIAFKPPSAST 183
>gi|413968476|gb|AFW90575.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Solanum tuberosum]
Length = 181
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/165 (55%), Positives = 121/165 (73%), Gaps = 7/165 (4%)
Query: 3 ASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEAL 62
AS AP + GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E L
Sbjct: 20 ASSMVAP-----FTGLKSTATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETL 73
Query: 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMF
Sbjct: 74 SYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMF 133
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GC D++Q+L E+QECK AYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 134 GCTDATQVLAEVQECKNAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|162946539|gb|ABY21254.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Solanum tuberosum]
Length = 181
Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + RCM+ W PIN KK+E LSYLP L+D+
Sbjct: 27 FTGLK--SAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINTKKYETLSYLPDLTDEQ 83
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 84 LLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLA 143
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QECKK+YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 EVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|302802199|ref|XP_002982855.1| hypothetical protein SELMODRAFT_17395 [Selaginella moellendorffii]
gi|300149445|gb|EFJ16100.1| hypothetical protein SELMODRAFT_17395 [Selaginella moellendorffii]
Length = 132
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 107/132 (81%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG 95
+ VS+GS+ CM+ P++N +FE LSYLP LS D++A+EIDYML K WIPCLEFD VG
Sbjct: 1 TSRVSSGSRVNCMQIVCPLSNSRFETLSYLPPLSPDNVAREIDYMLSKNWIPCLEFDHVG 60
Query: 96 YVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
+ RENS+ PGYYDGRYWT+WKLPMFGC+D +Q+L EI+ECK YPNAYIR L F+N +Q
Sbjct: 61 AISRENSREPGYYDGRYWTLWKLPMFGCSDPAQVLREIEECKSMYPNAYIRVLGFDNIRQ 120
Query: 156 GQCMSFLIQKPT 167
QC+SF++QKP+
Sbjct: 121 VQCISFIVQKPS 132
>gi|3914600|sp|O64416.1|RBS_MARPA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|3168587|dbj|BAA28610.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Marchantia paleacea subsp. diptera]
Length = 180
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 34 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE 93
W +KT +NGS+ CM+ W P NN KFE LSYLP LS D++AK+IDY++K GW PC+EFD
Sbjct: 45 WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDV 104
Query: 94 VGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYIRCLAFNN 152
G V RE S MPGYYDGRYWTMWKLPMFGC DS+ +L EI+ECKK Y YIRCL F+N
Sbjct: 105 QGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDN 164
Query: 153 QKQGQCMSFLIQKPT 167
+Q QC SF++ +PT
Sbjct: 165 TRQVQCASFIVHQPT 179
>gi|162946537|gb|ABY21253.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Solanum tuberosum]
Length = 181
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + RCM+ W PIN KK+E LSYLP L+D+
Sbjct: 27 FTGLK--SAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQ 83
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 84 LLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDTTQVLA 143
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QECKK+YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 EVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|132085|sp|P26574.1|RBS1_SOLTU RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|21563|emb|CAA49413.1| ribulose bisphosphate carboxylase [Solanum tuberosum]
Length = 181
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + RCM+ W PIN KK+E LSYLP L+D+
Sbjct: 27 FTGLK--SAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQ 83
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 84 LLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLA 143
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QECKK+YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 EVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|132125|sp|P26577.1|RBSC_SOLTU RecName: Full=Ribulose bisphosphate carboxylase small chain 2C,
chloroplastic; Short=RuBisCO small subunit 2C; Flags:
Precursor
gi|21569|emb|CAA49416.1| ribulose bisphosphate carboxylase [Solanum tuberosum]
Length = 180
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 117/153 (76%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|132123|sp|P26576.1|RBSB_SOLTU RecName: Full=Ribulose bisphosphate carboxylase small chain 2B,
chloroplastic; Short=RuBisCO small subunit 2B; Flags:
Precursor
gi|21567|emb|CAA49415.1| ribulose bisphosphate carboxylase [Solanum tuberosum]
Length = 180
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 117/153 (76%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|417593|sp|P32764.1|RBS3_SOLTU RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|21571|emb|CAA49417.1| ribulose bisphosphate carboxylase [Solanum tuberosum]
Length = 181
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|255625881|gb|ACU13285.1| unknown [Glycine max]
Length = 178
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 13/177 (7%)
Query: 1 MSASIFTAPV------AGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKT 50
M++S+ ++P AG+G + GLK S A P + + + SNG + +CM+
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQV 58
Query: 51 WNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYD 109
W P+ KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ PGYYD
Sbjct: 59 WAPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 118
Query: 110 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GRYWTMWKLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 119 GRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|3914586|sp|O65349.1|RBS_CAPAN RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|3152715|gb|AAC17126.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Capsicum annuum]
Length = 187
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 13 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ + GLK + + K + +S SNG + CM W PIN KK+E LSYLP LSD+
Sbjct: 24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQ 82
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ KEI+Y+L+KGW+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LN
Sbjct: 83 LLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLN 142
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
E+QE KKAYP A+IR + F+N +Q QC+SF+ KP T
Sbjct: 143 EVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEAT 180
>gi|351725817|ref|NP_001235314.1| uncharacterized protein LOC100500504 [Glycine max]
gi|255630492|gb|ACU15604.1| unknown [Glycine max]
Length = 178
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
S ++ T AG+G + GLK S A P + + + SNG + +CM+ W PI K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|297801782|ref|XP_002868775.1| ribulose bisphosphate carboxylase small chain 1B [Arabidopsis
lyrata subsp. lyrata]
gi|297314611|gb|EFH45034.1| ribulose bisphosphate carboxylase small chain 1B [Arabidopsis
lyrata subsp. lyrata]
Length = 181
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVS-NGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV ++S NG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSATFPVTRKANNDITSISSNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECKK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|10946379|gb|AAG24884.1|AF303941_1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS3 [Glycine
max]
Length = 178
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 13/177 (7%)
Query: 1 MSASIFTAPV------AGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKT 50
M++S+ ++P AG+G + GLK S A P + + + SNG + +CM+
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQV 58
Query: 51 WNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYD 109
W P+ KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ PGYYD
Sbjct: 59 WPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 118
Query: 110 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GRYWTMWKLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 119 GRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|132146|sp|P16031.1|RBS_LARLA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|295822|emb|CAA34161.1| ribulose-1,5-carboxylase/oxygenase [Larix laricina]
Length = 189
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 112/159 (70%), Gaps = 7/159 (4%)
Query: 13 SGYLGLKPTSKALLPVKDSIA-----WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPS 67
S + GLK S A P +++ W KT SNGS+ RCM+ W P NKKFE LSYLP
Sbjct: 30 SAFTGLK--SMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPR 87
Query: 68 LSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 127
L+ + + KE++Y+LK W+PCLEF+E G + R PGYYDGRYW MWKLPMFGC ++S
Sbjct: 88 LTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEAS 147
Query: 128 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
Q+LNE+ EC KAYPNA+IR + F+N +Q QC+SF++ KP
Sbjct: 148 QVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
>gi|297801784|ref|XP_002868776.1| ribulose bisphosphate carboxylase [Arabidopsis lyrata subsp.
lyrata]
gi|297314612|gb|EFH45035.1| ribulose bisphosphate carboxylase [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 122/174 (70%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV + + + SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFSGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECKK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|359807453|ref|NP_001241137.1| ribulose bisphosphate carboxylase small chain 1, chloroplastic-like
[Glycine max]
gi|10946375|gb|AAG24882.1|AF303939_1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS1 [Glycine
max]
gi|1055368|gb|AAA81328.1| ribulose-1,5-bisphosphate carboxylase small subunit [Glycine max]
Length = 178
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
S ++ T AG+G + GLK S A P + + + SNG + +CM+ W P+ K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|351724437|ref|NP_001235266.1| ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 [Glycine
max]
gi|10946377|gb|AAG24883.1|AF303940_1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 [Glycine
max]
Length = 178
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
S ++ T AG+G + GLK S A P + + + SNG + +CM+ W P+ K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDTISIASNGGRVQCMQVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|224284878|gb|ACN40169.1| unknown [Picea sitchensis]
Length = 194
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 112/157 (71%), Gaps = 3/157 (1%)
Query: 13 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLS 69
S + GLK T++ +K + A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 35 SAFTGLKSTAQFPSSMKTNNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLT 94
Query: 70 DDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+
Sbjct: 95 QEQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQV 154
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
LNE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 155 LNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 191
>gi|30421141|gb|AAP31053.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Flaveria bidentis]
Length = 173
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 114/154 (74%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KEIDY+++ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEIDYLIRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
QECKK YP A+IR + F+N +Q QC+SF+ KPT
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPT 171
>gi|229893642|gb|ACQ90230.1| virus-resistance protein [Brassica rapa subsp. chinensis]
Length = 249
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV + S + SNG + CMK W P+ K
Sbjct: 76 SAAVATSPAQATMVAPFTGLK--SSAAFPVTRKSNTDITSIASNGGRVSCMKVWPPVGKK 133
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 134 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMW 193
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 194 KLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 247
>gi|116780863|gb|ABK21852.1| unknown [Picea sitchensis]
Length = 193
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 112/157 (71%), Gaps = 3/157 (1%)
Query: 13 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLS 69
+ + GLK T++ +K S A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 34 AAFTGLKSTAQFPSSMKISNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLT 93
Query: 70 DDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ + KE++Y+L+ W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+
Sbjct: 94 QEQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQV 153
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
LNE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 154 LNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 190
>gi|132120|sp|P26575.1|RBSA_SOLTU RecName: Full=Ribulose bisphosphate carboxylase small chain 2A,
chloroplastic; Short=RuBisCO small subunit 2A; Flags:
Precursor
gi|21565|emb|CAA49414.1| ribulose bisphosphate carboxylase [Solanum tuberosum]
Length = 180
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|116779577|gb|ABK21347.1| unknown [Picea sitchensis]
gi|116780861|gb|ABK21851.1| unknown [Picea sitchensis]
gi|148905962|gb|ABR16142.1| unknown [Picea sitchensis]
gi|224284092|gb|ACN39783.1| unknown [Picea sitchensis]
gi|224284864|gb|ACN40162.1| unknown [Picea sitchensis]
gi|224285028|gb|ACN40243.1| unknown [Picea sitchensis]
Length = 195
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K S A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 37 AFTGLKSTAQFPSSMKISNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 96
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+L+ W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 97 EQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 156
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 157 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 192
>gi|224284697|gb|ACN40080.1| unknown [Picea sitchensis]
Length = 183
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 25 AFTGLKSTAQFPSSMKTNNAGAEWEQKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 84
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 85 EQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 144
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 145 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 180
>gi|40287530|gb|AAR83879.1| Cristal-Glass1 protein [Capsicum annuum]
Length = 180
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 114/151 (75%), Gaps = 2/151 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK + + K + +S SNG + +CM W PIN KK+E LSYLP LSD+ + KE
Sbjct: 28 GLKSAASFPVTRKQDLDITS-IASNGGRVQCMLVWPPINKKKYETLSYLPDLSDEQLLKE 86
Query: 77 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
I+Y+L+KGW+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE
Sbjct: 87 IEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQE 146
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|132144|sp|P07089.1|RBS_FLATR RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|18466|emb|CAA28711.1| unnamed protein product [Flaveria trinervia]
Length = 173
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
QECKK YP A+IR + F+N +Q QC+SF+ KPT
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPT 171
>gi|132150|sp|P10053.1|RBS_PINTH RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|20958|emb|CAA31774.1| ribulose bisphosphate carboxylase preprotein [Pinus thunbergii]
Length = 171
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 3/157 (1%)
Query: 13 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLS 69
S + GLK T++ K S A W KT SNG + RCM+ W P N KFE LSYLP+L+
Sbjct: 14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLT 73
Query: 70 DDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
++ + KE++Y+L+ W+PCLEFD G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ+
Sbjct: 74 EEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQV 133
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+NE++EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 134 INEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
>gi|16195|emb|CAA32702.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
Length = 181
Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSITSNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gi|15240901|ref|NP_198657.1| ribulose bisphosphate carboxylase small chain 3B [Arabidopsis
thaliana]
gi|20141686|sp|P10798.2|RBS3B_ARATH RecName: Full=Ribulose bisphosphate carboxylase small chain 3B,
chloroplastic; Short=RuBisCO small subunit 3B; Flags:
Precursor
gi|13430424|gb|AAK25834.1|AF360124_1 putative ribulose bisphosphate carboxylase small chain 3b precursor
[Arabidopsis thaliana]
gi|15294246|gb|AAK95300.1|AF410314_1 F1O19.10/F1O19.10 [Arabidopsis thaliana]
gi|18087561|gb|AAL58912.1|AF462822_1 At5g38410/F1O19.10 [Arabidopsis thaliana]
gi|9758819|dbj|BAB09353.1| ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO
small subunit 3b) [Arabidopsis thaliana]
gi|15293183|gb|AAK93702.1| putative RuBisCO small 3b subunit precursor [Arabidopsis thaliana]
gi|15450944|gb|AAK96743.1| ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO
small subunit 3b) [Arabidopsis thaliana]
gi|17978793|gb|AAL47390.1| ribulose bisphosphate carboxylase small chain 3b precursor (RuBisCO
small subunit 3b) [Arabidopsis thaliana]
gi|20466117|gb|AAM19980.1| At5g38410/F1O19.10 [Arabidopsis thaliana]
gi|23397160|gb|AAN31863.1| putative ribulose bisphosphate carboxylase small chain 3b precursor
(RuBisCO small subunit 3b) [Arabidopsis thaliana]
gi|332006928|gb|AED94311.1| ribulose bisphosphate carboxylase small chain 3B [Arabidopsis
thaliana]
Length = 181
Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gi|116779842|gb|ABK21447.1| unknown [Picea sitchensis]
gi|116780594|gb|ABK21733.1| unknown [Picea sitchensis]
gi|116782047|gb|ABK22347.1| unknown [Picea sitchensis]
gi|116783228|gb|ABK22845.1| unknown [Picea sitchensis]
gi|116785645|gb|ABK23805.1| unknown [Picea sitchensis]
gi|116785985|gb|ABK23931.1| unknown [Picea sitchensis]
gi|116786044|gb|ABK23949.1| unknown [Picea sitchensis]
gi|116790039|gb|ABK25479.1| unknown [Picea sitchensis]
gi|116793644|gb|ABK26825.1| unknown [Picea sitchensis]
gi|224284814|gb|ACN40137.1| unknown [Picea sitchensis]
gi|224285468|gb|ACN40456.1| unknown [Picea sitchensis]
gi|224285619|gb|ACN40528.1| unknown [Picea sitchensis]
gi|224285683|gb|ACN40557.1| unknown [Picea sitchensis]
Length = 194
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 36 AFTGLKSTAQFPSSMKTNNAGAEWEQKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 95
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 96 EQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 155
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 156 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 191
>gi|116779377|gb|ABK21259.1| unknown [Picea sitchensis]
gi|116779401|gb|ABK21267.1| unknown [Picea sitchensis]
gi|116779440|gb|ABK21283.1| unknown [Picea sitchensis]
gi|116781990|gb|ABK22328.1| unknown [Picea sitchensis]
gi|116782020|gb|ABK22337.1| unknown [Picea sitchensis]
gi|116782035|gb|ABK22342.1| unknown [Picea sitchensis]
gi|116784457|gb|ABK23349.1| unknown [Picea sitchensis]
gi|116785630|gb|ABK23799.1| unknown [Picea sitchensis]
gi|116786299|gb|ABK24056.1| unknown [Picea sitchensis]
gi|116791702|gb|ABK26077.1| unknown [Picea sitchensis]
gi|116792861|gb|ABK26530.1| unknown [Picea sitchensis]
gi|148905732|gb|ABR16030.1| unknown [Picea sitchensis]
gi|224284032|gb|ACN39754.1| unknown [Picea sitchensis]
gi|224284134|gb|ACN39804.1| unknown [Picea sitchensis]
gi|224284171|gb|ACN39822.1| unknown [Picea sitchensis]
gi|224284301|gb|ACN39886.1| unknown [Picea sitchensis]
gi|224284342|gb|ACN39906.1| unknown [Picea sitchensis]
gi|224284389|gb|ACN39929.1| unknown [Picea sitchensis]
gi|224284796|gb|ACN40128.1| unknown [Picea sitchensis]
gi|224284941|gb|ACN40200.1| unknown [Picea sitchensis]
gi|224284998|gb|ACN40228.1| unknown [Picea sitchensis]
gi|224285010|gb|ACN40234.1| unknown [Picea sitchensis]
gi|224285109|gb|ACN40282.1| unknown [Picea sitchensis]
gi|224285123|gb|ACN40289.1| unknown [Picea sitchensis]
gi|224285656|gb|ACN40544.1| unknown [Picea sitchensis]
gi|224285893|gb|ACN40660.1| unknown [Picea sitchensis]
Length = 194
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 36 AFTGLKSTAQFPSSMKTNNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 95
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 96 EQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 155
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 156 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 191
>gi|255581641|ref|XP_002531624.1| Ribulose bisphosphate carboxylase small chain, chloroplast
precursor, putative [Ricinus communis]
gi|223528742|gb|EEF30752.1| Ribulose bisphosphate carboxylase small chain, chloroplast
precursor, putative [Ricinus communis]
Length = 180
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S ++ PV T+ SNG K CM+ W P+ KKFE LSYLP LS++S+
Sbjct: 26 FTGLK--SSSVFPVTRKQNNDITTLASNGGKVHCMQVWPPVGKKKFETLSYLPPLSEESL 83
Query: 74 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
AKE+DY+L+ GW+PCLEF+ E G+V+REN + PGYYDGR WTMWKLPMFGC DSSQ+L E
Sbjct: 84 AKEVDYLLRMGWVPCLEFELEHGFVYRENHRSPGYYDGRCWTMWKLPMFGCTDSSQVLKE 143
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
++E KKAYPN++IR + F+N++Q QC+SF+ KP+
Sbjct: 144 LEEAKKAYPNSFIRIIGFDNKRQVQCISFIAYKPS 178
>gi|270383724|dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 179
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 115/153 (75%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S + K S +S + SNG + +CM+ W PI KKFE LSYLP LS +S+A
Sbjct: 25 FTGLKSASAFPVTRKSSEDITSLS-SNGGRVQCMQVWPPIGKKKFETLSYLPPLSPESLA 83
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC DS+Q+L E+
Sbjct: 84 KEVDYLLRSGWVPCLEFELEHGFVYREHHSSPGYYDGRYWTMWKLPMFGCTDSAQVLKEL 143
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A+IR + F+N++Q QC+SF+ KP
Sbjct: 144 EEAKKAYPTAFIRIIGFDNKRQVQCISFIAYKP 176
>gi|116780912|gb|ABK21876.1| unknown [Picea sitchensis]
gi|116782420|gb|ABK22499.1| unknown [Picea sitchensis]
gi|116784603|gb|ABK23405.1| unknown [Picea sitchensis]
gi|116793621|gb|ABK26814.1| unknown [Picea sitchensis]
gi|116793637|gb|ABK26822.1| unknown [Picea sitchensis]
gi|116794195|gb|ABK27041.1| unknown [Picea sitchensis]
gi|148907673|gb|ABR16965.1| unknown [Picea sitchensis]
gi|224285721|gb|ACN40576.1| unknown [Picea sitchensis]
Length = 193
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K S A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 35 AFTGLKSTAQFPSSMKISNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 94
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+L+ W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 95 EQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 154
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 155 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 190
>gi|116782078|gb|ABK22359.1| unknown [Picea sitchensis]
Length = 193
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K S A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 35 AFTGLKSTAQFPSSMKISNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 94
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+L+ W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 95 EQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 154
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 155 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 190
>gi|132154|sp|P08135.1|RBS_RAPSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|755803|emb|CAA29801.1| carboxylase [Raphanus sativus]
gi|226003|prf||1405335A ribulose bisphosphate carboxylase S
Length = 181
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA++ T+ + + + GLK S A PV + + + SNG + CMK W PI K
Sbjct: 8 SAAVVTSQLQATMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECKK YPNA IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|132153|sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|218021|dbj|BAA00450.1| RuBisCO small subunit [Pyrus pyrifolia var. culta]
Length = 183
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 112/152 (73%), Gaps = 3/152 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+AKE
Sbjct: 32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89
Query: 77 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E
Sbjct: 90 VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
KKAYP ++IR + F+N +Q QC+SF+ KP
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181
>gi|30421144|gb|AAP31054.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Flaveria bidentis]
Length = 173
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+++ W+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLIRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
QECKK YP A+IR + F+N +Q QC+SF+ KPT
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPT 171
>gi|3914597|sp|Q39749.1|RBS7_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 7,
chloroplastic; Short=RuBisCO small subunit 7; Flags:
Precursor
gi|967231|gb|AAB67851.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 173
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>gi|56900734|gb|AAW31667.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Ammopiptanthus mongolicus]
Length = 174
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 119/157 (75%), Gaps = 4/157 (2%)
Query: 12 GSGYLGLKPTSKALLPVKDSIAWSSKTVSN-GSKTRCMKTWNPINNKKFEALSYLPSLSD 70
G+ + GLK S A PV + T++N G + +CM W P+ KKFE LSYLP LS
Sbjct: 15 GAPFTGLK--SMASFPVPRKVNSDITTIANNGGRVQCMLVWPPLGRKKFETLSYLPPLSI 72
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+S+ KE++Y+L+KGW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC+D+SQ+
Sbjct: 73 ESLTKEVEYLLRKGWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCSDASQV 132
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+ E++ECKK YP A++R + F+N++Q QC+SF+ KP
Sbjct: 133 MKELEECKKEYPTAFVRIIGFDNKRQVQCISFIAYKP 169
>gi|403160|gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus x
domestica x Pyrus communis]
Length = 179
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+A
Sbjct: 26 FTGLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLA 83
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+K W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DSSQ+L E+
Sbjct: 84 KEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSSQVLKEL 143
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP ++IR + F+N +Q QC+SF+ KP
Sbjct: 144 EEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 176
>gi|132113|sp|P12468.1|RBS4_SOYBN RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
chloroplastic; Short=RuBisCO small subunit 4; Flags:
Precursor
gi|170058|gb|AAA34008.1| ribulose 1,5-bisphosphate carboxylase [Glycine max]
gi|225579|prf||1306410A ribulose bisphosphate carboxylase S
Length = 178
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 121/170 (71%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
S ++ T AG+G + GLK S A LP + + + SNG + +CM+ W P+ K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGLPTRKTNNDITSIASNGGRVQCMQVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ GYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|464595|sp|Q02980.1|RBS_MALSP RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|19581|emb|CAA46475.1| ribulose bisphosphate carboxylase [Malus sp.]
Length = 183
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 114/154 (74%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK +S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+A
Sbjct: 30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLA 87
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E+
Sbjct: 88 KEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKEL 147
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+E KKAYP ++IR + F+N +Q QC+SF+ KP
Sbjct: 148 EEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181
>gi|132086|sp|P00865.1|RBS1_SOYBN RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|18742|emb|CAA23736.1| rubpcase [Glycine max]
Length = 178
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
S ++ T AG+G + GLK S A P + + + SNG + +CM+ W PI K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ P YYDGRYWTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|132112|sp|P05349.1|RBS3B_SOLLC RecName: Full=Ribulose bisphosphate carboxylase small chain 3B,
chloroplastic; Short=RuBisCO small subunit 3B; Flags:
Precursor
gi|19336|emb|CAA29403.1| ribulose 1,5-bisphosphate carboxylase/oxyenase [Solanum
lycopersicum]
gi|218318|dbj|BAA01888.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Solanum lycopersicum]
Length = 180
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 145 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>gi|3914580|sp|Q39745.1|RBS3_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|967223|gb|AAB67847.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 173
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>gi|132104|sp|P07180.1|RBS3A_SOLLC RecName: Full=Ribulose bisphosphate carboxylase small chain 3A/3C,
chloroplastic; Short=RuBisCO small subunit 3A/3C; Flags:
Precursor
gi|19334|emb|CAA29402.1| ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum
lycopersicum]
gi|19338|emb|CAA29404.1| ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum
lycopersicum]
gi|170500|gb|AAA34190.1| ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit
[Solanum lycopersicum]
Length = 180
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 145 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>gi|162463469|ref|NP_001105294.1| ribulose bisphosphate carboxylase small chain, chloroplastic
precursor [Zea mays]
gi|132147|sp|P05348.1|RBS_MAIZE RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|22474|emb|CAA29784.1| ribulose-1,5-bisphosphate carboxylase (RuBPC) precursor [Zea mays]
gi|217964|dbj|BAA00120.1| ribulose 1,5-bisphosphate carboxylase small subunit [Zea mays]
gi|194702004|gb|ACF85086.1| unknown [Zea mays]
gi|194703936|gb|ACF86052.1| unknown [Zea mays]
gi|413924938|gb|AFW64870.1| ribulose bisphosphate carboxylase small subunit1 [Zea mays]
gi|359512|prf||1312317A ribulosebisphosphate carboxylase
Length = 170
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 115/160 (71%), Gaps = 2/160 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
++ A + + GLK S A LPV + S VSNG + RCM+ W NKKFE LSYLP
Sbjct: 9 SSATAVAPFQGLK--STASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLP 66
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
LS D + K++DY+L+ GWIPCLEF +VG+V+RENS P YYDGRYWTMWKLPMFGCND+
Sbjct: 67 PLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDA 126
Query: 127 SQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+Q+ E+QE K+YP+A+ R + F+N KQ QC+SF+ KP
Sbjct: 127 TQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166
>gi|3914591|sp|Q42823.1|RBS_GLYTA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|1079740|gb|AAA82071.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
precursor [Glycine tabacina]
Length = 178
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 123/177 (69%), Gaps = 13/177 (7%)
Query: 1 MSASIFTAPV------AGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKT 50
M++S+ ++P AG+G + GLK S A P + + + SNG + +CM+
Sbjct: 1 MASSMISSPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQV 58
Query: 51 WNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYD 109
W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ + PGYYD
Sbjct: 59 WPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYD 118
Query: 110 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GRYWTMWKLPMFGC D+SQ+L E+QE K AYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 119 GRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKP 175
>gi|388509310|gb|AFK42721.1| unknown [Lotus japonicus]
Length = 182
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV+ + + SNG + +CM+ W PI KKFE LSYLP L+ + +
Sbjct: 29 FTGLK--SMAGFPVRKANNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPPLTTEQLL 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+L+KGW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC+D++Q+L E+
Sbjct: 87 KEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLKEL 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
E +AYPNA++R + F+N +Q QC+SF+ +P
Sbjct: 147 DEAVRAYPNAFVRIIGFDNVRQVQCISFIAHRPA 180
>gi|19464|emb|CAA38346.1| ribulose bisphosphate carboxylase [Larix laricina]
Length = 171
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 111/159 (69%), Gaps = 7/159 (4%)
Query: 13 SGYLGLK-----PTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPS 67
S + GLK P+SK + W KT SNG++ RCM+ W P NKK+E LSYLP
Sbjct: 12 SAFTGLKSMAQFPSSKTM--SNAGAEWERKTTSNGARVRCMQVWPPYANKKWETLSYLPR 69
Query: 68 LSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 127
L+ + + KE++Y+LK W+PCLEF+E G + R PGYYDGRYW MWKLPMFGC ++S
Sbjct: 70 LTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEAS 129
Query: 128 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
Q+LNE+ EC KAYPNAYIR + F+N +Q QC+SF++ KP
Sbjct: 130 QVLNEVNECAKAYPNAYIRVIGFDNVRQVQCISFIVHKP 168
>gi|3914582|sp|Q39747.1|RBS5_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 5,
chloroplastic; Short=RuBisCO small subunit 5; Flags:
Precursor
gi|967227|gb|AAB67849.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 173
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>gi|132095|sp|P07179.2|RBS2A_SOLLC RecName: Full=Ribulose bisphosphate carboxylase small chain 2A,
chloroplastic; Short=RuBisCO small subunit 2A; AltName:
Full=LESS 5; Flags: Precursor
gi|170498|gb|AAA34189.1| ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit (EC
4.1.1.39) [Solanum lycopersicum]
gi|4456641|emb|CAA29401.2| ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum
lycopersicum]
Length = 180
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 116/155 (74%), Gaps = 6/155 (3%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+
Sbjct: 26 FTGLK--SSATFPVTKKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQ 82
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ EI+Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 83 LLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLA 142
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 143 EVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>gi|53748417|emb|CAH59401.1| Rubisco SSU [Plantago major]
Length = 177
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 113/153 (73%), Gaps = 4/153 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
Y GLK TS + P ++K N K RCM+ W P+ KK+E LSYLP L+ + +A
Sbjct: 25 YAGLKSTS--VFPATRKTG-NAKLARNAGKVRCMQVWPPLGKKKYETLSYLPDLTVEQLA 81
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KEIDY+L+ WIPCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D+SQ++ E+
Sbjct: 82 KEIDYLLRSKWIPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDASQVIAEL 141
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+ECKK YPNA++R + F+N +Q QC+SF+ KP
Sbjct: 142 EECKKEYPNAWVRIIGFDNVRQVQCISFIAAKP 174
>gi|162946541|gb|ABY21255.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Solanum tuberosum]
Length = 181
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 115/155 (74%), Gaps = 6/155 (3%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + RCM+ W PIN KK+E LSYLP L+D+
Sbjct: 27 FTGLK--SAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINTKKYETLSYLPDLTDEQ 83
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ KE++Y+LK GW+PCLEF+ E G V+RE K PGYYDGRYW MWKLPMFGC D++Q+L
Sbjct: 84 LLKEVEYLLKNGWVPCLEFETEHGIVYREKHKSPGYYDGRYWNMWKLPMFGCTDATQVLA 143
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QECKK+YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 EVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|3914576|sp|Q39743.1|RBS1_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|967219|gb|AAB67845.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 173
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>gi|170504|gb|AAA34192.1| ribulose-1,5-bisphosphate carboxylase, small subunit precursor
[Solanum lycopersicum]
Length = 180
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 6/155 (3%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+
Sbjct: 26 FTGLK--SSATFPVTKKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQ 82
Query: 73 IAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L
Sbjct: 83 LLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLA 142
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 143 EVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>gi|15240912|ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1B [Arabidopsis
thaliana]
gi|132090|sp|P10796.1|RBS1B_ARATH RecName: Full=Ribulose bisphosphate carboxylase small chain 1B,
chloroplastic; Short=RuBisCO small subunit 1B; Flags:
Precursor
gi|15294184|gb|AAK95269.1|AF410283_1 F1O19.10/F1O19.10 [Arabidopsis thaliana]
gi|16193|emb|CAA32700.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
gi|9758821|dbj|BAB09355.1| ribulose bisphosphate carboxylase small chain 1b precursor (RuBisCO
small subunit 1b) [Arabidopsis thaliana]
gi|23505787|gb|AAN28753.1| At5g38430/F1O19.10 [Arabidopsis thaliana]
gi|332006932|gb|AED94315.1| ribulose bisphosphate carboxylase small chain 1B [Arabidopsis
thaliana]
Length = 181
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gi|132079|sp|P08706.2|RBS1_SOLLC RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; AltName:
Full=LESS 17; Flags: Precursor
gi|170496|gb|AAA34188.1| ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit
[Solanum lycopersicum]
gi|295814|emb|CAA29400.1| ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum
lycopersicum]
Length = 181
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EI+Y+LK GW+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 SEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178
>gi|270383720|dbj|BAI53118.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 181
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 117/164 (71%), Gaps = 6/164 (3%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALS 63
T+PV + + GLK S + PV + SNG + +CM+ W P+ KKFE LS
Sbjct: 17 TSPVQAAMVAPFTGLK--SASAFPVTRKSNDITSLPSNGGRVQCMQVWPPVGLKKFETLS 74
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFG 122
YLP L+ +AKEIDY+L+ GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFG
Sbjct: 75 YLPPLTPTQLAKEIDYLLRSGWVPCLEFETEKGFVYREHHHSPGYYDGRYWTMWKLPMFG 134
Query: 123 CNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
C DS+Q+L E++ECKKAYP A++R + F+N++Q QC+SF+ KP
Sbjct: 135 CTDSAQVLKELEECKKAYPTAFVRIIGFDNKRQVQCISFIAFKP 178
>gi|1079736|gb|AAA82069.1| ribulose 1,5-bisphosphate carboxylase small subunit precursor
[Glycine soja]
Length = 178
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 120/170 (70%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
S ++ T AG+G + GLK S A P + + + SNG + +CM+ W P+ K
Sbjct: 8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+++ PGYYDGR WTMW
Sbjct: 66 KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRCWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 126 KLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|266891|sp|P05346.2|RBS1_BRANA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|17850|emb|CAA43410.1| ribulose bisphosphate carboxylase [Brassica napus]
Length = 181
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
SA++ T+P + + GLK +S A + + + VSNG + CMK W P+ KK
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK-SSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKK 66
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
FE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWK 126
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|296784927|dbj|BAJ08160.1| ribulose 1,5-bisphosphate carboxylase/oxygenase [Brassica rapa
subsp. chinensis]
Length = 181
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 120/173 (69%), Gaps = 5/173 (2%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
SA++ T+P + + GLK +S A + + + VSNG + CMK W P+ KK
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK-SSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKK 66
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
FE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWK 126
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|132080|sp|P22433.1|RBS2_NICSY RecName: Full=Ribulose bisphosphate carboxylase small chain S41,
chloroplastic; Short=RuBisCO small subunit S41; Flags:
Precursor
gi|295823|emb|CAA37516.1| NySS41 [Nicotiana sylvestris]
Length = 181
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS++ +
Sbjct: 27 FTGLKSATSFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
+E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 REVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|15240903|ref|NP_198658.1| ribulose bisphosphate carboxylase small chain 2B [Arabidopsis
thaliana]
gi|27735224|sp|P10797.2|RBS2B_ARATH RecName: Full=Ribulose bisphosphate carboxylase small chain 2B,
chloroplastic; Short=RuBisCO small subunit 2B; Flags:
Precursor
gi|9758820|dbj|BAB09354.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|16649139|gb|AAL24421.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|17064722|gb|AAL32515.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|17064764|gb|AAL32536.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|17064934|gb|AAL32621.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|20259880|gb|AAM13287.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|25083689|gb|AAN72105.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|27311897|gb|AAO00914.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|28058980|gb|AAO29974.1| ribulose bisphosphate carboxylase small chain 2b precursor (RuBisCO
small subunit 2b) [Arabidopsis thaliana]
gi|332006931|gb|AED94314.1| ribulose bisphosphate carboxylase small chain 2B [Arabidopsis
thaliana]
Length = 181
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
S ++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 STAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gi|16194|emb|CAA32701.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
Length = 181
Score = 191 bits (486), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
S ++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 STAVVTSPAQATMVAPFTGLK--SSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gi|3914590|sp|Q42822.1|RBS_GLYTO RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|1079738|gb|AAA82070.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
precursor [Glycine tomentella]
Length = 178
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 122/177 (68%), Gaps = 13/177 (7%)
Query: 1 MSASIFTAPV------AGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKT 50
M++S+ ++P AG+G + GLK S A P + + + SNG + +CM+
Sbjct: 1 MASSMISSPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQV 58
Query: 51 WNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYD 109
W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+REN + PGYYD
Sbjct: 59 WPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYD 118
Query: 110 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GRYWTMWKLP+FGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF+ KP
Sbjct: 119 GRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175
>gi|3914599|sp|O48550.1|RBS_ZANAE RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|2665670|gb|AAC18406.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Zantedeschia aethiopica]
Length = 178
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 105/145 (72%)
Query: 22 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYML 81
S A PV A SSK SNG + RCM+ W P KKFE LSYLP L+ + + +E+DY++
Sbjct: 31 SSAAFPVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLI 90
Query: 82 KKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYP 141
+ GWIPC+EF +VG+V+RE PGYYDGRYWTMWKLPMFGC DSSQ+L E+ EC KAYP
Sbjct: 91 RNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYP 150
Query: 142 NAYIRCLAFNNQKQGQCMSFLIQKP 166
+ + R + F+N +Q QC+SFL KP
Sbjct: 151 DYFNRIIGFDNTRQVQCISFLTYKP 175
>gi|3914604|sp|Q40250.1|RBS_LACSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|217946|dbj|BAA03103.1| riburose-1,5-bisphosphate carboxylase/oxygenase small subunit
precursor [Lactuca sativa]
Length = 181
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W PI KK+E LSYLP LSD++++KEIDY+++ WIPCLEF+ E G+V+
Sbjct: 50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YPNA+IR + F+N +Q QC
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQC 169
Query: 159 MSFLIQKP 166
+SF++ KP
Sbjct: 170 ISFIVAKP 177
>gi|3914581|sp|Q39746.1|RBS4_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
chloroplastic; Short=RuBisCO small subunit 4; Flags:
Precursor
gi|967225|gb|AAB67848.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 178
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A P S SNG + +CMK W P+ KK+E LSYLP+L++ +A
Sbjct: 25 FTGLK--SNAAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLA 82
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 83 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 142
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 143 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
>gi|388497188|gb|AFK36660.1| unknown [Lotus japonicus]
gi|388515177|gb|AFK45650.1| unknown [Lotus japonicus]
Length = 177
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + CM+ W PI KKFE LSYLP L+ + +AKE++Y+++KGW+PCLEF+ E G+V+
Sbjct: 47 SNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVY 106
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN K PGYYDGRYWTMWKLPMFG D+SQ+L E++E KKAYPNA+IR + F+N++Q QC
Sbjct: 107 RENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQC 166
Query: 159 MSFLIQKP 166
+SF+ +P
Sbjct: 167 ISFIAHRP 174
>gi|186527416|ref|NP_001119331.1| ribulose bisphosphate carboxylase small chain 3B [Arabidopsis
thaliana]
gi|332006930|gb|AED94313.1| ribulose bisphosphate carboxylase small chain 3B [Arabidopsis
thaliana]
Length = 186
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 121/179 (67%), Gaps = 12/179 (6%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV-----GYVHRENSKMPGYYDGR 111
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ EV G+V+RE+ PGYYDGR
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGR 125
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
YWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 184
>gi|132091|sp|P27985.1|RBS2_BRANA RecName: Full=Ribulose bisphosphate carboxylase small chain F1,
chloroplastic; Short=RuBisCO small subunit F1; Flags:
Precursor
gi|17852|emb|CAA39402.1| ribulose bisphosphate carboxylase /oxygenase small subunit
[Brassica napus]
Length = 181
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV + + + SNG + CMK W P+ K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|170502|gb|AAA34191.1| ribulose-1,5-bisphosphate carboxylase, small subunit precursor
[Solanum lycopersicum]
Length = 181
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP SD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDFSDEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EI+Y+LK GW+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 SEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178
>gi|79013990|gb|ABB51649.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit precursor [Brassica napus]
Length = 181
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV + + + SNG + CMK W P+ K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMW
Sbjct: 66 KFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|132071|sp|P10647.1|RBS0_SOLTU RecName: Full=Ribulose bisphosphate carboxylase small chain C,
chloroplastic; Short=RuBisCO small subunit C; Flags:
Precursor
gi|169557|gb|AAA33838.1| ribulose bisphosphate carboxylase (EC 4.1.1.39) [Solanum tuberosum]
Length = 181
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ +
Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D +Q+L E+
Sbjct: 86 KEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE K AYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 QEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
>gi|116780460|gb|ABK21690.1| unknown [Picea sitchensis]
Length = 194
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIAWSS---KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A + KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 36 AFTGLKSTAQFPSSMKTNNAGAELEQKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 95
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 96 EQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 155
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 156 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 191
>gi|154269258|gb|ABS72189.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1A
[Corchorus olitorius]
Length = 183
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 106/137 (77%), Gaps = 1/137 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
+ SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ GWIPCLEF+ E
Sbjct: 46 TSIASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSGWIPCLEFELEH 105
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE+ PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP+A+IR + F+N++
Sbjct: 106 GFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPDAFIRIIGFDNRR 165
Query: 155 QGQCMSFLIQKPTTTTS 171
Q QC+SF+ KP + S
Sbjct: 166 QVQCISFIAYKPPSFKS 182
>gi|339013500|gb|AEJ33935.1| chloroplast putative ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Wolffia
australiana]
Length = 177
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 114/151 (75%), Gaps = 1/151 (0%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GL+ +S AL + + A S +SNG K RCM+ W P KKFE LSYLP LS +++AKE
Sbjct: 28 GLR-SSAALPATRKANADLSTLLSNGGKARCMQVWPPEGLKKFETLSYLPPLSTEALAKE 86
Query: 77 IDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
++Y+++ GWIPC+EF + G+V+RE PGYYDGRYWTMWKLPMFGC D+SQ++ E++E
Sbjct: 87 VEYLIRNGWIPCIEFSKEGFVYREYHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEA 146
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
KKAYP+ ++R + F+N++Q QC+SF+ KPT
Sbjct: 147 KKAYPDYFVRIIGFDNKRQVQCVSFIAYKPT 177
>gi|224285107|gb|ACN40281.1| unknown [Picea sitchensis]
Length = 194
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A W KT SNG + R M+ W P NN KFE LSYLP L+
Sbjct: 36 AFTGLKSTAQFPSSMKTNNAGAEWERKTTSNGGRVRYMQVWPPYNNPKFETLSYLPRLTQ 95
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 96 EQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 155
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 156 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 191
>gi|388519945|gb|AFK48034.1| unknown [Lotus japonicus]
Length = 181
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV+ + +NG + +CM+ W PI KKFE LSYLP L+ + +
Sbjct: 28 FTGLK--SMAGFPVRKVNNDITSIANNGGRVQCMQVWPPIGKKKFETLSYLPPLTTEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+L+KGW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC+D++Q+L E+
Sbjct: 86 KEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDATQVLKEL 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KAYPNA++R + F+N +Q QC+SF+ +P
Sbjct: 146 DEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRP 178
>gi|388491604|gb|AFK33868.1| unknown [Lotus japonicus]
Length = 177
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + CM+ W PI KKFE LSYLP L+ + +AKE++Y+++KGW+PCLEF+ E G+V+
Sbjct: 47 SNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVY 106
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN K PGYYDGRYWTMWKLPMFG D+SQ+L E++E KKAYPNA+IR + F+N++Q QC
Sbjct: 107 RENLKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQC 166
Query: 159 MSFLIQKP 166
+SF+ +P
Sbjct: 167 ISFIAHRP 174
>gi|406727|emb|CAA53083.1| ribulose-1,5-bisphosphate carboxylase /oxygenase, small subunit
[Brassica napus]
Length = 181
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 119/174 (68%), Gaps = 7/174 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
SA++ ++P + + GLK S A PV ++ SNG + CMK W P+ K
Sbjct: 8 SATVVSSPAQAAMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVNCMKVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGY DGRYWTMW
Sbjct: 66 KFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYNDGRYWTMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 126 KLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|116672873|gb|ABK15574.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Camellia sinensis]
Length = 176
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 11/175 (6%)
Query: 1 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWS-SKTVSNGSKTRCMKTWN 52
M+ASI ++ V + GLK TS PV + + SNG + +CMK W
Sbjct: 1 MAASIISSAVVAPAQASMAAPFTGLKSTSA--FPVTRKLDTDITSLASNGGRVQCMKVWP 58
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
P+ KKFE LSYLP L+ + KE+DY+++ GWIPCLEF + G+V+RE++K PGYYDGR
Sbjct: 59 PLGLKKFETLSYLPPLTQAQLGKEVDYLIRLGWIPCLEFSVQGGFVYREHNKSPGYYDGR 118
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YWTMWKLPMFGC DSSQ+L E++ECKK YP ++IR + F+N++Q QC+SF+ KP
Sbjct: 119 YWTMWKLPMFGCTDSSQVLKEVEECKKEYPQSFIRIIGFDNKRQVQCISFICYKP 173
>gi|59800169|sp|P69249.1|RBS_TOBAC RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; AltName:
Full=TSSU3-8; Flags: Precursor
gi|59800184|sp|P69250.1|RBS1_NICSY RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|19760|emb|CAA25862.1| unnamed protein product [Nicotiana sylvestris]
gi|20024|emb|CAA26208.1| small subunit ribulose 1,5-bisphosphate carboxylase [Nicotiana
tabacum]
gi|224384|prf||1103193A carboxylase,RBP
Length = 180
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|3914606|sp|Q41351.1|RBS_STELP RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|556418|gb|AAA69018.1| ribulose 1,5-bisphosphate carboxylase small subunit [Stellaria
longipes]
Length = 180
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 112/154 (72%), Gaps = 4/154 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A PV ++ SNG + RCM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLK--SNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQL 83
Query: 74 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
EI+Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D++Q+ E
Sbjct: 84 LSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAE 143
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+QE KKAYP+A+IR + F+N +Q QC+SF+ KP
Sbjct: 144 VQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177
>gi|3914592|sp|Q96542.1|RBS_BETVE RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|1536889|emb|CAA69102.1| ribulose-bisphosphate carboxylase [Betula pendula]
Length = 182
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 1/132 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
+ SNG + +CM+ W P+ KKFE LSYLP LS + +AKE+DY+L+K IPCLEF+ E
Sbjct: 48 TSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEH 107
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE+++ PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKKAYP+A+IR + F+N++
Sbjct: 108 GFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKR 167
Query: 155 QGQCMSFLIQKP 166
Q Q +SF+ KP
Sbjct: 168 QVQIISFIAYKP 179
>gi|119720784|gb|ABL97962.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
precursor [Brassica rapa]
Length = 181
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 119/173 (68%), Gaps = 5/173 (2%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
SA++ T+P + + GLK +S A + + + VSNG + CMK W P+ KK
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK-SSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKK 66
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
FE LSYLP L++ + KE+DY+L+ WIPC+E + E G+V+RE+ PGYYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTEVELGKEVDYLLRNKWIPCVELELEHGFVYREHGSTPGYYDGRYWTMWK 126
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|132087|sp|P00871.2|RBS1_WHEAT RecName: Full=Ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic; Short=RuBisCO small subunit PWS4.3;
Flags: Precursor
gi|170769|gb|AAA34301.1| ribulose-1,5-bisphosphate carboxylase/oxygenase [Triticum aestivum]
Length = 174
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV S +VSNG + RCM+ W KKFE LSYLP LS ++++
Sbjct: 16 FQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALS 73
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 74 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 133
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165
>gi|6635351|gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Lactuca sativa]
Length = 181
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 104/128 (81%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W PI KK+E LSYLP LSD++++KEIDY+++ W+PCLEF+ E G+V+
Sbjct: 50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVY 109
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YPNA+IR + F++ +Q QC
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQC 169
Query: 159 MSFLIQKP 166
+SF++ KP
Sbjct: 170 ISFIVSKP 177
>gi|3914596|sp|Q39748.1|RBS6_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 6,
chloroplastic; Short=RuBisCO small subunit 6; Flags:
Precursor
gi|967229|gb|AAB67850.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 173
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + A PV + S SNG + +CMK W P+ KK+ LSYLP+L++ +A
Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLA 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS Q++ E+
Sbjct: 78 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKEL 137
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 138 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
>gi|15219826|ref|NP_176880.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
thaliana]
gi|27735223|sp|P10795.2|RBS1A_ARATH RecName: Full=Ribulose bisphosphate carboxylase small chain 1A,
chloroplastic; Short=RuBisCO small subunit 1A; Flags:
Precursor
gi|11762170|gb|AAG40363.1|AF325011_1 000C10C11 [Arabidopsis thaliana]
gi|15294200|gb|AAK95277.1|AF410291_1 F1O19.10/F1O19.10 [Arabidopsis thaliana]
gi|4204274|gb|AAD10655.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|15451002|gb|AAK96772.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|15809842|gb|AAL06849.1| At1g67090/F1O19.10 [Arabidopsis thaliana]
gi|16604426|gb|AAL24219.1| At1g67090/F1O19.10 [Arabidopsis thaliana]
gi|16649141|gb|AAL24422.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|17065072|gb|AAL32690.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|17065270|gb|AAL32789.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|17473628|gb|AAL38277.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|20260064|gb|AAM13379.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|20260080|gb|AAM13387.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|20453287|gb|AAM19882.1| At1g67090/F1O19.10 [Arabidopsis thaliana]
gi|23198308|gb|AAN15681.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|25083492|gb|AAN72087.1| ribulose bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]
gi|110741032|dbj|BAE98610.1| ribulose bisphosphate carboxylase like protein, small subunit
[Arabidopsis thaliana]
gi|110741446|dbj|BAE98685.1| ribulose bisphosphate carboxylase like protein, small subunit
[Arabidopsis thaliana]
gi|110741475|dbj|BAE98695.1| ribulose bisphosphate carboxylase like protein, small subunit
[Arabidopsis thaliana]
gi|110741865|dbj|BAE98874.1| ribulose bisphosphate carboxylase like protein, small subunit
[Arabidopsis thaliana]
gi|332196473|gb|AEE34594.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
thaliana]
Length = 180
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + CM+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+
Sbjct: 48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVY 107
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 108 REHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQC 167
Query: 159 MSFLIQKPTTTT 170
+SF+ KP + T
Sbjct: 168 ISFIAYKPPSFT 179
>gi|1673456|emb|CAA70416.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Zea
mays]
gi|194702782|gb|ACF85475.1| unknown [Zea mays]
gi|194703224|gb|ACF85696.1| unknown [Zea mays]
gi|195636562|gb|ACG37749.1| ribulose bisphosphate carboxylase small chain C [Zea mays]
gi|414588565|tpg|DAA39136.1| TPA: ribulose bisphosphate carboxylase small subunit2 [Zea mays]
Length = 170
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 112/160 (70%), Gaps = 2/160 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
++ A + + GLK S A LPV S VSNG + RCM+ W NKKFE LSYLP
Sbjct: 9 SSATAVAPFQGLK--SAASLPVARRSTRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLP 66
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
LS D + K++DY+L+ GWIPCLEF ++G+V+RENS P YYDGRYWTMWKLPMFGC D+
Sbjct: 67 PLSTDDLLKQVDYLLRNGWIPCLEFSKLGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDA 126
Query: 127 SQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+Q+ E+QE AYP+A+ R + F+N +Q QC+SF+ KP
Sbjct: 127 TQVYKELQEAIAAYPDAFHRVIGFDNVRQTQCVSFIAYKP 166
>gi|6573202|gb|AAF17589.1|AF202645_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena clauda]
Length = 168
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV A S +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSASSLGSVSNGGRIRCMQVWPTEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|3914574|sp|O22572.1|RBS2_FRIAG RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|2605708|gb|AAB84180.1| ribulose 1,5 bisphosphate carboxylase, small subunit type II
[Fritillaria agrestis]
Length = 179
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK S + PV + ++ S SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLK--SASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>gi|3914575|sp|O24634.1|RBS1_FRIAG RecName: Full=Ribulose bisphosphate carboxylase small chain 1/4,
chloroplastic; Short=RuBisCO small subunit 1/4; Flags:
Precursor
gi|2605706|gb|AAB84179.1| ribulose 1,5 bisphosphate carboxylase, small subunit type I
[Fritillaria agrestis]
gi|2641203|gb|AAB86853.1| ribulose 1,5 bisphosphate carboxylase small subunit type IV
[Fritillaria agrestis]
Length = 179
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A+IR + F+N +Q QC+SF++++P
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
>gi|3914577|sp|Q39744.1|RBS2_FLAPR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|967221|gb|AAB67846.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
protein [Flaveria pringlei]
Length = 178
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S P S SNG + +CMK W P+ K++E LSYLP+L++ +A
Sbjct: 25 FTGLK--SNVAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLA 82
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+
Sbjct: 83 KEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKEL 142
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 143 QECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
>gi|297841389|ref|XP_002888576.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
lyrata subsp. lyrata]
gi|297334417|gb|EFH64835.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
lyrata subsp. lyrata]
Length = 180
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 119/173 (68%), Gaps = 5/173 (2%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
SA++ +P + + GLK +S A + + + SNG + CM+ W P+ KK
Sbjct: 8 SATMVASPAQATMVAPFTGLK-SSAAFPATRKANNDITSITSNGGRVNCMQVWPPVGKKK 66
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
FE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTDSELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWK 126
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVEECKKEYPEAFIRIIGFDNSRQVQCISFIAYKPPSFT 179
>gi|4038673|dbj|BAA35153.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops longissima]
gi|4038703|dbj|BAA35168.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops longissima]
gi|4038721|dbj|BAA35177.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 165
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSSASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|313150676|dbj|BAJ40065.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sorghum bicolor]
Length = 169
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 2/160 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
++ A + + GLK S A LPV S VSNG + RCM+ W NKKFE LSYLP
Sbjct: 8 SSATAVAPFQGLK--STATLPVARRSTTSFAKVSNGGRIRCMQVWPAYGNKKFETLSYLP 65
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
L+++ + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+
Sbjct: 66 PLTEEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDA 125
Query: 127 SQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
SQ+ E+QE +YP+AY+R L F+N KQ QC+SF+ KP
Sbjct: 126 SQVYKELQEAIASYPDAYVRILGFDNIKQTQCVSFIAYKP 165
>gi|242070055|ref|XP_002450304.1| hypothetical protein SORBIDRAFT_05g003480 [Sorghum bicolor]
gi|241936147|gb|EES09292.1| hypothetical protein SORBIDRAFT_05g003480 [Sorghum bicolor]
Length = 169
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 112/160 (70%), Gaps = 2/160 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
++ A + + GLK S A LPV S VSNG + RCM+ W NKKFE LSYLP
Sbjct: 8 SSATAVAPFQGLK--STATLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLP 65
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
L+++ + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+
Sbjct: 66 PLTEEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDA 125
Query: 127 SQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
SQ+ E+QE +YP+AY+R L F+N KQ QC+SF+ KP
Sbjct: 126 SQVYKELQEAIASYPDAYVRILGFDNIKQTQCVSFIAYKP 165
>gi|6573204|gb|AAF17590.1|AF202646_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena clauda]
Length = 168
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV A S +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSASSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|168061506|ref|XP_001782729.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665762|gb|EDQ52435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 176
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 108/156 (69%), Gaps = 5/156 (3%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ + GLK S L P K A + +V NGS+ +CM+ WNPI KFE SYLP LSD
Sbjct: 25 SAKAFTGLK--SATLFPSK---AQTLSSVQNGSRVQCMQVWNPIGQTKFETFSYLPPLSD 79
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
D+IAK+++YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L
Sbjct: 80 DAIAKQVEYMIQQKLIPCLEFDNSNGVSRVNNSSPGYYDGRYWTMWKLPMFGCQDSAQVL 139
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
EI+ECKK +P Y+R L F+N KQ Q FL+ +P
Sbjct: 140 REIEECKKTFPGCYVRVLGFDNVKQVQICGFLVARP 175
>gi|406366502|gb|AFS41748.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
Length = 179
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 120/170 (70%), Gaps = 6/170 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK ++ A ++ + + SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLK-SASAFPVIRKANNDITSLASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 127 KLPMFGCTDSAQVLKELEECKKAYPNAFIRIIGFDNVRQVQCISFIAYKP 176
>gi|255582745|ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chain, chloroplast
precursor, putative [Ricinus communis]
gi|223528159|gb|EEF30223.1| Ribulose bisphosphate carboxylase small chain, chloroplast
precursor, putative [Ricinus communis]
Length = 185
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%), Gaps = 4/154 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSN-GSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK TS PV T++N G + +CM+ W P+ KKFE LSYLP L+ + +
Sbjct: 28 FTGLKSTSA--FPVTRKTNTDITTLANNGGRVQCMQVWPPLGKKKFETLSYLPDLTREQL 85
Query: 74 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
AKE++Y+L+KGW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC+D+ Q+L E
Sbjct: 86 AKEVEYLLRKGWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCSDAVQVLKE 145
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+ E KAYPN+++R + F+N +Q QC+SF+ KP
Sbjct: 146 LDEAIKAYPNSFVRIIGFDNVRQVQCISFIAYKP 179
>gi|385298941|gb|AFI60243.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Panicum virgatum]
Length = 148
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 112/147 (76%), Gaps = 3/147 (2%)
Query: 17 GLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
GLK T++ LP+ + S + + VSNG + RCM+ W NNKKFE LSYLP LS + + K
Sbjct: 2 GLKSTAR--LPISRRSSSKGFRNVSNGGRIRCMQVWPTENNKKFETLSYLPPLSTEDLLK 59
Query: 76 EIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+IDY+++ W+PCLEF ++G+V REN+ PGYYDGRYWTMWKLPMFGC D++Q+ E++E
Sbjct: 60 QIDYLIRNNWVPCLEFSKLGFVFRENATSPGYYDGRYWTMWKLPMFGCTDATQVYAELEE 119
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFL 162
CKKAYP+ YIR L F+N +Q QC+SF+
Sbjct: 120 CKKAYPDNYIRILGFDNARQVQCVSFI 146
>gi|3914578|sp|O22573.1|RBS3_FRIAG RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|2605710|gb|AAB84181.1| ribulose 1,5 bisphosphate carboxylase, small subunit type III
[Fritillaria agrestis]
Length = 179
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>gi|371942054|gb|AEX60839.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium hirsutum]
gi|406366482|gb|AFS41738.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366498|gb|AFS41746.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
gi|406366522|gb|AFS41758.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 179
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVTPFTGLKSASAFPVTRKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 127 KLPMFGCTDSAQVLEELEECKKAYPNAFIRIIGFDNVRQVQCISFIAYKP 176
>gi|449434620|ref|XP_004135094.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Cucumis sativus]
gi|449512849|ref|XP_004164158.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Cucumis sativus]
Length = 185
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 115/153 (75%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK ++ + K+++ ++ SNG K +CMK W P+ +KFE LSYLP +S++ ++
Sbjct: 28 FTGLKSSAGFPITRKNNVDITT-LASNGGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLS 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE DY+L+ GW+PC+EFD G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ++ EI
Sbjct: 87 KECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVIQEI 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+A+IR + F+N +Q QC+SF+ KP
Sbjct: 147 EEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
>gi|406366512|gb|AFS41753.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium mustelinum]
Length = 179
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VH
Sbjct: 49 SNGGRVQCMQVWPPTGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVH 108
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q QC
Sbjct: 109 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELEECKKAYPNAFIRIIGFDNVRQVQC 168
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 169 ISFIAYKP 176
>gi|379131260|emb|CCF55356.1| ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis
sativus]
Length = 185
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 115/153 (75%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK ++ + K+++ ++ SNG K +CMK W P+ +KFE LSYLP +S++ ++
Sbjct: 28 FTGLKSSAGFPITRKNNVDITT-LASNGGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLS 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE DY+L+ GW+PC+EFD G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ++ EI
Sbjct: 87 KECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVIQEI 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+A+IR + F+N +Q QC+SF+ KP
Sbjct: 147 EEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
>gi|371942060|gb|AEX60842.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366450|gb|AFS41722.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium arboreum]
gi|406366452|gb|AFS41723.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium arboreum]
gi|406366466|gb|AFS41730.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366468|gb|AFS41731.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366480|gb|AFS41737.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366496|gb|AFS41745.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
gi|406366510|gb|AFS41752.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium mustelinum]
gi|406366524|gb|AFS41759.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 179
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VH
Sbjct: 49 SNGGRVQCMQVWPPTGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVH 108
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q QC
Sbjct: 109 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELEECKKAYPNAFIRIIGFDNVRQVQC 168
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 169 ISFIAYKP 176
>gi|4038679|dbj|BAA35156.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops searsii]
gi|4038685|dbj|BAA35159.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum dicoccoides]
gi|4038687|dbj|BAA35160.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 165
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|22465|emb|CAA68419.1| ribulose 1,5-bisphosphate carboxylase/oxygenase [Zea mays]
Length = 169
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 114/160 (71%), Gaps = 3/160 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
++ A + + GLK S A LPV + S VSNG + RCM+ W NKKFE LSYLP
Sbjct: 9 SSATAVAPFQGLK--STASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLP 66
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
LS D + K++DY L+ GWIPCLEF +VG+V+RENS P YYDGRYWTMWKLPMFGCND+
Sbjct: 67 PLSTDDLLKQVDY-LRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDA 125
Query: 127 SQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+Q+ E+QE K+YP+A+ R + F+N KQ QC+SF+ KP
Sbjct: 126 TQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 165
>gi|406366472|gb|AFS41733.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
Length = 179
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VH
Sbjct: 49 SNGGRVQCMQVWPPTGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVH 108
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q QC
Sbjct: 109 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKAYPNAFIRIIGFDNVRQVQC 168
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 169 ISFIAYKP 176
>gi|4038689|dbj|BAA35161.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Secale cereale]
Length = 165
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSSGSLGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|4038691|dbj|BAA35162.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Hordeum vulgare subsp. vulgare]
Length = 165
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP L+ +++
Sbjct: 12 FQGLK--STAGLPVSRRSSASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRP 161
>gi|119720808|gb|ABL97974.1| ribulose bisphosphate carboxylase [Brassica rapa]
Length = 162
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
+ VSNG + CMK W P+ KKFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E
Sbjct: 25 TSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEH 84
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +
Sbjct: 85 GFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNR 144
Query: 155 QGQCMSFLIQKPTTTT 170
Q QC+SF+ KP + T
Sbjct: 145 QVQCISFIAYKPPSFT 160
>gi|6409337|gb|AAF07946.1|AF192777_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena clauda]
Length = 168
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV A S VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSASSLGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|168062257|ref|XP_001783098.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665415|gb|EDQ52101.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 183
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 107/149 (71%), Gaps = 5/149 (3%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + +SSK +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK++
Sbjct: 34 KAFSGLKSNTLFSSKAQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 93
Query: 78 DYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 137
+YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGCNDS+Q+L EI+ECK
Sbjct: 94 EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCNDSAQVLREIEECK 153
Query: 138 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
K +P ++R L F+N KQ Q FL+ +P
Sbjct: 154 KTFPGCFVRVLGFDNVKQVQICGFLVARP 182
>gi|3978515|gb|AAC83374.1| ribulose-1,5-bisphosphate carboxylase small subunit [Avena clauda]
Length = 168
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSSASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|132155|sp|P18960.1|RBS_SILPR RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|169892|gb|AAB39037.1| ribulose bisphosphate carboxylase precursor [Silene latifolia
subsp. alba]
Length = 177
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 117/154 (75%), Gaps = 4/154 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS + K ++ +S +NG + CM+ W P N KKFE LSYLP+LS++S+
Sbjct: 25 FSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLL 83
Query: 75 KEIDYMLKKGWIPCLEFDEVG--YVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
KEI+Y+L KGW+PCLEF EVG +V+REN+K PGYYDGRYWTMWKLPMFGC D+SQ+ E
Sbjct: 84 KEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAE 142
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+ ECK AYP+A++R + F+N++Q QC+SF+ KP
Sbjct: 143 VVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176
>gi|17855|emb|CAA30290.1| rubisco ssu precursor [Brassica napus]
Length = 181
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 119/173 (68%), Gaps = 5/173 (2%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
SA++ T+P + + GLK +S A + + + VSNG + M+ W P+ KK
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK-SSSAFPVTRKANNDITSIVSNGGRVNSMQVWPPVGKKK 66
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
FE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWK 126
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 179
>gi|326492692|dbj|BAJ90202.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326498503|dbj|BAJ98679.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506242|dbj|BAJ86439.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326515130|dbj|BAK03478.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 174
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S VSNG + RCM+ W KKFE LSYLP L+ +++
Sbjct: 16 FQGLK--STAGLPVSRRSSASLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTTEALL 73
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 74 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 133
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRP 165
>gi|3928152|emb|CAA10290.1| ribulose 1,5-bisphosphate carboxylase small subunit [Cicer
arietinum]
Length = 181
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 3/157 (1%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A PV+ + SNG + CM+ W PI KKFE LSYLP L++
Sbjct: 24 AVAPFVGLK--SMAGFPVRKVNNDITSIASNGGRVHCMQVWPPIGKKKFETLSYLPPLTE 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ + KE++Y+L+KGW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLP+FGC ++ Q+
Sbjct: 82 EQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNNSPGYYDGRYWTMWKLPLFGCTEAVQV 141
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
L E+QE KAYPNA++R + F+N +Q QC+SF+ P
Sbjct: 142 LKELQEVVKAYPNAFVRIIGFDNVRQVQCISFIAHTP 178
>gi|371942058|gb|AEX60841.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366462|gb|AFS41728.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366476|gb|AFS41735.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366492|gb|AFS41743.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
gi|406366506|gb|AFS41750.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium mustelinum]
gi|406366520|gb|AFS41757.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 182
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|406366494|gb|AFS41744.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
Length = 182
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|397702095|gb|AFO59569.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Saccharum hybrid cultivar GT28]
Length = 169
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
Query: 1 MSASIF-TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKF 59
M+ S+ ++ A + + GLK T A LPV S VSNG + RCM+ W NKKF
Sbjct: 1 MAPSVMASSATAVAPFQGLKST--ASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKF 58
Query: 60 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 119
E LSYLP L+ + + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLP
Sbjct: 59 ETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPYYYDGRYWTMWKLP 118
Query: 120 MFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
MFGC D+SQ+ E+QE +YP+AY+R L F+N +Q QC+SF+ KP
Sbjct: 119 MFGCTDASQVYKELQEAIASYPDAYVRILGFDNIRQTQCVSFIAYKP 165
>gi|4038723|dbj|BAA35178.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Secale cereale]
Length = 165
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLK--STAGLPVSRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|4038697|dbj|BAA35165.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 165
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSSASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|4038669|dbj|BAA35151.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops longissima]
gi|4038671|dbj|BAA35152.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops longissima]
gi|4038675|dbj|BAA35154.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops sharonensis]
gi|4038677|dbj|BAA35155.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops bicornis]
gi|4038681|dbj|BAA35157.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops tauschii]
gi|4038693|dbj|BAA35163.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Thinopyrum intermedium]
gi|4038709|dbj|BAA35171.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops searsii]
gi|4038715|dbj|BAA35174.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum timopheevii subsp. armeniacum]
Length = 165
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLK--STAGLPVSRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|326488091|dbj|BAJ89884.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326490758|dbj|BAJ90046.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326499502|dbj|BAJ86062.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526929|dbj|BAK00853.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 166
>gi|164698711|gb|ABY66908.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Miscanthus x giganteus]
Length = 169
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 2/156 (1%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + + GLK S A LPV S VSNG + RCM+ W NKKFE LSYLP L++
Sbjct: 12 AVAPFQGLK--STASLPVARRPTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTE 69
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+SQ+
Sbjct: 70 EQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVY 129
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+QE +YP+AY+R L F+N +Q QC+SF+ KP
Sbjct: 130 KELQEAIASYPDAYVRILGFDNIRQTQCVSFIAYKP 165
>gi|406366454|gb|AFS41724.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium raimondii]
Length = 182
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSNLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|53748423|emb|CAH59404.1| Rubisco SSU [Plantago major]
Length = 174
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
S+G K RCM+ W P KK+E LSYLP L+ + +AKEIDY+L+ WIPCLEF+ E G+V+
Sbjct: 44 SSGLKVRCMQVWPPTGKKKYETLSYLPDLTVEQLAKEIDYLLRSKWIPCLEFELEHGFVY 103
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN++ PGYYDGRYWTMWKLPMFGC D+SQ++ E++ECKK YPNA++R + F+N +Q QC
Sbjct: 104 RENARSPGYYDGRYWTMWKLPMFGCTDASQVIAELEECKKEYPNAWVRIIGFDNVRQVQC 163
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 164 ISFIASKP 171
>gi|118489251|gb|ABK96431.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 182
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 111/152 (73%), Gaps = 4/152 (2%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
GLK T A PV A ++ SNG + +CM+ W P KKFE LSYLP L+++ +AK
Sbjct: 30 GLKST--AAFPVSTRKANDITSIASNGGRVQCMQVWPPTGLKKFETLSYLPDLTEEELAK 87
Query: 76 EIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
EIDY+L+ W+PCLEF+ E G+VHRE+ PGYYDGRYWTMWKLPMFGC ++SQ+L E+
Sbjct: 88 EIDYLLRSKWVPCLEFELEKGWVHREHHSSPGYYDGRYWTMWKLPMFGCTEASQVLVELG 147
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 148 EAKKAYPNAFIRIIGFDNTRQVQCISFIAAKP 179
>gi|4038701|dbj|BAA35167.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 165
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVGRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|132118|sp|P26573.1|RBS8_NICPL RecName: Full=Ribulose bisphosphate carboxylase small chain 8B,
chloroplastic; Short=RuBisCO small subunit 8B; Flags:
Precursor
gi|19706|emb|CAA31994.1| ribulose bisphosphate carboxylase [Nicotiana plumbaginifolia]
gi|170318|gb|AAA34110.1| ribulose bisphosphate carboxylase [Nicotiana plumbaginifolia]
Length = 180
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EI+Y+LK GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP A++R + F+N +Q QC+SF+ KP
Sbjct: 145 EEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
>gi|3914579|sp|O22645.1|RBS5_FRIAG RecName: Full=Ribulose bisphosphate carboxylase small chain 5,
chloroplastic; Short=RuBisCO small subunit 5; Flags:
Precursor
gi|2641205|gb|AAB86854.1| ribulose 1,5 bisphosphate carboxylase small subunit type V
[Fritillaria agrestis]
Length = 179
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 28 FVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 85
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC ++Q++ E
Sbjct: 86 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEA 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct: 146 AECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>gi|13241109|gb|AAK16231.1|AF044399_1 ribulose-1,5-bisphosphate carboxylase small subunit P1B [Flaveria
palmeri]
gi|13241113|gb|AAK16233.1|AF044401_1 ribulose-1,5-bisphosphate carboxylase small subunit P2B [Flaveria
palmeri]
Length = 131
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+
Sbjct: 1 SNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVY 60
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC
Sbjct: 61 RENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQC 120
Query: 159 MSFLIQKPT 167
+SF+ KPT
Sbjct: 121 VSFIASKPT 129
>gi|132145|sp|P08705.1|RBS_HELAN RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|18808|emb|CAA68490.1| ribulose bisphosphate carboxylase [Helianthus annuus]
gi|755735|emb|CAA28737.1| RuBisCO (SSU) [Helianthus annuus]
Length = 178
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 114/164 (69%), Gaps = 6/164 (3%)
Query: 7 TAPVAG---SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALS 63
TAP + + GLK S A P S SNG + +CMK W P+ KK+E LS
Sbjct: 14 TAPAQANMVAPFTGLK--SNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLS 71
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFG 122
YLP L++ +AKE+DY+L+K W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFG
Sbjct: 72 YLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFG 131
Query: 123 CNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
C DS+Q++ E+ ECKK YP A+IR + F+N +Q QC+ F+ +P
Sbjct: 132 CTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175
>gi|11762156|gb|AAG40356.1|AF325004_1 At1g67090 [Arabidopsis thaliana]
Length = 180
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 119/173 (68%), Gaps = 5/173 (2%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK 58
SA++ +P + + GLK +S A + + + SNG + CM+ W PI KK
Sbjct: 8 SATMVASPAQATMVAPFNGLK-SSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKK 66
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
FE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+RE+ P YYDGRYWTMWK
Sbjct: 67 FETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPRYYDGRYWTMWK 126
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 LPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gi|168002996|ref|XP_001754199.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694753|gb|EDQ81100.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 106/151 (70%), Gaps = 5/151 (3%)
Query: 21 TSKALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
T KA +K + +S K +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK
Sbjct: 30 TVKAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAK 89
Query: 76 EIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+++YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+E
Sbjct: 90 QVEYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEE 149
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
CKK +P ++R L F+N KQ Q FL+ +P
Sbjct: 150 CKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180
>gi|406366546|gb|AFS41770.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium gossypioides]
Length = 168
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 100/124 (80%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 44 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 103
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +PGYYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 104 RKYSSLPGYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 163
Query: 159 MSFL 162
+SF+
Sbjct: 164 ISFI 167
>gi|371942062|gb|AEX60843.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium hirsutum]
gi|406366484|gb|AFS41739.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366500|gb|AFS41747.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
gi|406366526|gb|AFS41760.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 179
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK ++ A ++ + + SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLK-SASAFPVIRKANNDITSLASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 127 KLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 176
>gi|357496895|ref|XP_003618736.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
gi|217071562|gb|ACJ84141.1| unknown [Medicago truncatula]
gi|355493751|gb|AES74954.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
Length = 180
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 111/156 (71%), Gaps = 4/156 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A PV K + + SNG + CM+ W PI KKFE LSYLP L+++ +
Sbjct: 26 FTGLK--SSAAFPVTKKTNNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTEEQL 83
Query: 74 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
AKE++Y+++KGW+PCLEF+ E G+V+REN PGYYDGRYWTMWKLP+FG DSSQ+L E
Sbjct: 84 AKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVLKE 143
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
+ E K AYP ++IR + F+N +Q QC+SF+ P T
Sbjct: 144 LAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPAT 179
>gi|4038661|dbj|BAA35147.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 165
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FHGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFSAFRP 161
>gi|4038713|dbj|BAA35173.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum urartu]
Length = 165
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLK--STAGLPVSRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE+ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHYSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|4090291|emb|CAA10496.1| hypothetical protein [Secale cereale]
Length = 175
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKST--AGLPVGRRSGSAGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFVFREHNNSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166
>gi|4038657|dbj|BAA35145.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
gi|4038659|dbj|BAA35146.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
gi|4038665|dbj|BAA35149.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 165
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FHGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|4038683|dbj|BAA35158.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum timopheevii subsp. armeniacum]
Length = 165
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|4038667|dbj|BAA35150.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 165
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FHGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|11990897|dbj|BAB19812.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 175
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q++NE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 166
>gi|357496893|ref|XP_003618735.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
gi|355493750|gb|AES74953.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
Length = 177
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 100/130 (76%), Gaps = 1/130 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + CM+ W PI KKFE LSYLP L++D +AKE++Y+++KGW+PCLEF+ E G+V+
Sbjct: 47 SNGGRVNCMQVWPPIGKKKFETLSYLPPLTEDQLAKEVEYLIRKGWVPCLEFELEKGFVY 106
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN PGYYDGRYWTMWKLP+FG DSSQ+L E+ E K AYP ++IR + F+N +Q QC
Sbjct: 107 RENHSSPGYYDGRYWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQC 166
Query: 159 MSFLIQKPTT 168
+SF+ P T
Sbjct: 167 ISFIAHTPAT 176
>gi|326495856|dbj|BAJ90550.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 176
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 114/160 (71%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
+A A + + GLK T+ + A +VSNG + RCM+ W KKFE LSYLP
Sbjct: 8 SAATAVAPFQGLKSTAGLPVSRLSGNAAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLP 67
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D+
Sbjct: 68 PLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 127
Query: 127 SQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 128 TQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 167
>gi|132106|sp|P07689.1|RBS3_PEA RecName: Full=Ribulose bisphosphate carboxylase small chain 3A,
chloroplastic; Short=RuBisCO small subunit 3A; Flags:
Precursor
gi|20855|emb|CAA27864.1| ribulose bisphosphate carboxylase [Pisum sativum]
gi|225288|prf||1211236A carboxylase,ribulose bisphosphate
Length = 180
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 116/166 (69%), Gaps = 5/166 (3%)
Query: 2 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEA 61
++++ +A VA G GLK S PVK + SNG + +CM+ W PI KKFE
Sbjct: 16 ASTVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFET 71
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPM 120
LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPM
Sbjct: 72 LSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPM 131
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
FG D+SQ+L E+ E AYP A++R + F+N +Q QC+SF+ P
Sbjct: 132 FGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
>gi|406366470|gb|AFS41732.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366486|gb|AFS41740.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366528|gb|AFS41761.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 179
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLKSASAFPVTRKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 127 KLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 176
>gi|326499422|dbj|BAJ86022.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509829|dbj|BAJ87130.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKST--AGLPVSRRSGSAGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRP 166
>gi|13241103|gb|AAK16228.1|AF044396_1 ribulose-1,5-bisphosphate carboxylase small subunit R2 [Flaveria
ramosissima]
Length = 131
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+
Sbjct: 1 SNGGRVQCMKVWPPLGKKKYETLSYLPDLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVY 60
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC
Sbjct: 61 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQC 120
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 121 ISFIASKP 128
>gi|406366456|gb|AFS41725.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium raimondii]
Length = 179
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLKSASAFPVTRKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSNLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 127 KLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 176
>gi|4038711|dbj|BAA35172.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops tauschii]
Length = 165
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLK--STAGLPVSRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGIVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|168053419|ref|XP_001779134.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669494|gb|EDQ56080.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 5/149 (3%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K S +SSK +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK++
Sbjct: 32 KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91
Query: 78 DYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 137
DYM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC D +Q+L EI+ECK
Sbjct: 92 DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151
Query: 138 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
K +P ++R L F+N KQ Q FL+ +P
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARP 180
>gi|585791|sp|Q08186.1|RBS6_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 6,
chloroplastic; Short=RuBisCO small subunit 6; Flags:
Precursor
gi|304447|gb|AAA03698.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
Length = 186
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 4/156 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S PV + TV SNG K +CM+ W P+ KKFE LSYLP LS++S+
Sbjct: 30 FTGLKSVSA--FPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESL 87
Query: 74 AKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E
Sbjct: 88 LKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 147
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
++E KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 148 LEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 183
>gi|11990895|dbj|BAB19811.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
gi|11990903|dbj|BAB19815.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 174
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 73
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ GYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 74 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSSGYYDGRYWTMWKLPMFGCTDATQVLNEVE 133
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165
>gi|406366514|gb|AFS41754.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium mustelinum]
Length = 179
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLKSASAFPVTRKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEDGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 127 KLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 176
>gi|4090293|emb|CAA10497.1| hypothetical protein [Secale cereale]
Length = 175
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP L+ +++
Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q++NE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 166
>gi|13241107|gb|AAK16230.1|AF044398_1 ribulose-1,5-bisphosphate carboxylase small subunit P1A, partial
[Flaveria palmeri]
Length = 131
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+
Sbjct: 1 SNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVY 60
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC
Sbjct: 61 RENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQC 120
Query: 159 MSFLIQKPT 167
+SF+ KPT
Sbjct: 121 VSFISPKPT 129
>gi|30013663|gb|AAP03874.1| putative ribulose bisphosphate carboxylase small subunit protein
precursor [Nicotiana tabacum]
Length = 180
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 112/153 (73%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K ++ +S SNG + +CM+ W P KK+E LSYLP LS++ +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLSEEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EI+Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 SEIEYLLKNGWVPCLEFETERGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 145 GEAKKAYPEAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|13241111|gb|AAK16232.1|AF044400_1 ribulose-1,5-bisphosphate carboxylase small subunit P2A [Flaveria
palmeri]
Length = 131
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 102/129 (79%), Gaps = 1/129 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+ + W+PCLEF+ E G+V+
Sbjct: 1 SNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLHRNKWVPCLEFELEHGFVY 60
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC
Sbjct: 61 RENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQC 120
Query: 159 MSFLIQKPT 167
+SF+ KPT
Sbjct: 121 VSFIASKPT 129
>gi|118487084|gb|ABK95372.1| unknown [Populus trichocarpa]
gi|118488041|gb|ABK95841.1| unknown [Populus trichocarpa]
Length = 182
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 112/152 (73%), Gaps = 4/152 (2%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
GLK S A PV A ++ SNG + +CM+ W P KKFE LSYLP L+++ +AK
Sbjct: 30 GLK--SAAAFPVSTRKANDITSIASNGGRVQCMQVWPPTGLKKFETLSYLPDLTEEELAK 87
Query: 76 EIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
EIDY+L+ W+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC ++SQ+L E++
Sbjct: 88 EIDYLLRSKWVPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMFGCTEASQVLLELE 147
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 148 EAKKAYPNAFIRIIGFDNTRQVQCISFIAAKP 179
>gi|326494270|dbj|BAJ90404.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518274|dbj|BAJ88166.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + +VSNG + RCM+ W KKFE LSYLP L+ +++
Sbjct: 16 FQGLKST--AGLPVSRRSGSAGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFRP 166
>gi|4038705|dbj|BAA35169.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops sharonensis]
Length = 165
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + R M+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSSASLGSVSNGGRIRYMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|224077170|ref|XP_002305162.1| predicted protein [Populus trichocarpa]
gi|118486788|gb|ABK95229.1| unknown [Populus trichocarpa]
gi|118486831|gb|ABK95250.1| unknown [Populus trichocarpa]
gi|222848126|gb|EEE85673.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 112/152 (73%), Gaps = 4/152 (2%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
GLK S A PV A ++ SNG + +CM+ W P KKFE LSYLP L+++ +AK
Sbjct: 30 GLK--SAAAFPVSTRKANDITSIASNGGRVQCMQVWPPTGLKKFETLSYLPDLTEEELAK 87
Query: 76 EIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
EIDY+L+ W+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC ++SQ+L E++
Sbjct: 88 EIDYLLRSKWVPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMFGCTEASQVLLELE 147
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 148 EAKKAYPNAFIRIIGFDNTRQVQCISFIAAKP 179
>gi|132138|sp|P08474.1|RBS_CUCSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|167542|gb|AAA33131.1| ribulose bisphosphate carboxylase/oxygenase precursor peptide
[Cucumis sativus]
Length = 189
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK ++ + K+++ ++ SN K +CMK W P+ +KFE LSYLP +S++ ++
Sbjct: 28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLS 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE DY+L+ GW+PC+EFD G+V+REN + PG+YDGRYWTMWKLPMFGC DSSQ++ EI
Sbjct: 87 KECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEI 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+A+IR + F+N +Q QC+SF+ KP
Sbjct: 147 EEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
>gi|406366464|gb|AFS41729.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366478|gb|AFS41736.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366508|gb|AFS41751.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium mustelinum]
Length = 182
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELENCKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|388504618|gb|AFK40375.1| unknown [Medicago truncatula]
Length = 180
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 110/156 (70%), Gaps = 4/156 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A PV K + + SNG + CM+ W PI KKFE LSYLP L+++ +
Sbjct: 26 FTGLK--SSAAFPVTKKTNNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTEEQL 83
Query: 74 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
KE++Y+++KGW+PCLEF+ E G+V+REN PGYYDGRYWTMWKLP+FG DSSQ+L E
Sbjct: 84 VKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDSSQVLKE 143
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
+ E K AYP ++IR + F+N +Q QC+SF+ P T
Sbjct: 144 LAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPAT 179
>gi|167270|gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
Length = 180
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 109/155 (70%), Gaps = 3/155 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+
Sbjct: 25 FTGLK--SVSAFPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLM 82
Query: 75 KEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E+
Sbjct: 83 KEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAEL 142
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
+E KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 143 EEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 177
>gi|225905973|gb|ACO35888.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Ageratina adenophora]
Length = 178
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A P S +NG + +CMK W P+ KK+E LSYLP+L++ +A
Sbjct: 25 FTGLK--SNAAFPATKKANDFSTLPNNGGRVQCMKVWPPLGLKKYETLSYLPTLTETQLA 82
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+DY+L+ W+PCLEF+ E G+V+RE+++ PGYYDGR+WTMWKLPMFGC DS+Q+L E+
Sbjct: 83 KEVDYLLRNKWVPCLEFELEHGFVYREHARSPGYYDGRHWTMWKLPMFGCTDSAQVLKEV 142
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 143 GECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
>gi|357168157|ref|XP_003581511.1| PREDICTED: ribulose bisphosphate carboxylase small chain A,
chloroplastic-like [Brachypodium distachyon]
Length = 176
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 112/152 (73%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + ++ A +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKSTAGLPVSRRNRSAAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSVEALL 75
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+++ W+PCLEF +VG+V RE+++ PGYYDGRYWTMWKLPMFGC D++Q+L E++
Sbjct: 76 KQIEYLIRSKWVPCLEFSKVGFVFREHARSPGYYDGRYWTMWKLPMFGCTDATQVLKELE 135
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+A+IR + F+N +Q QC+SF+ KP
Sbjct: 136 EAKKEYPDAFIRIIGFDNVRQVQCISFIAYKP 167
>gi|6409343|gb|AAF07949.1|AF192780_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
maroccana]
Length = 168
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIREVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|4038707|dbj|BAA35170.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops bicornis]
Length = 164
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T LPV S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKSTGG--LPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYD RYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDSRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|6573206|gb|AAF17591.1|AF202647_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
agadiriana]
gi|6573208|gb|AAF17592.1|AF202648_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
maroccana]
gi|3901434|gb|AAC78644.1| ribulose-1,5-bisphosphate carboxylase small subunit [Avena
maroccana]
Length = 168
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|406366532|gb|AFS41763.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium herbaceum]
gi|406366534|gb|AFS41764.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium herbaceum]
Length = 165
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 99/124 (79%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VH
Sbjct: 41 SNGGRVQCMQVWPPTGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVH 100
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q QC
Sbjct: 101 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELEECKKAYPNAFIRIIGFDNVRQVQC 160
Query: 159 MSFL 162
+SF+
Sbjct: 161 ISFI 164
>gi|295792|emb|CAA31948.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
Length = 182
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 120/175 (68%), Gaps = 7/175 (4%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMK--TWNPINN 56
SA++ +P + + GLK +S A + + + SNG + CM+ W PI
Sbjct: 8 SATMVASPAQATMVAPFNGLK-SSAAFPATRKANNDITSITSNGGRVNCMQMQVWPPIGK 66
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTM 115
KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+RE+ PGYYDGRYWTM
Sbjct: 67 KKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTM 126
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
WKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 WKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFVAYKPPSFT 181
>gi|132099|sp|P26667.1|RBS2_WHEAT RecName: Full=Ribulose bisphosphate carboxylase small chain PW9,
chloroplastic; Short=RuBisCO small subunit PW9; Flags:
Precursor
gi|170771|gb|AAA34302.1| ribulose-1,5-bisphosphate carboxylase/oxygenase [Triticum aestivum]
Length = 175
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVK-DSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A LP+ S + +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLK--STAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166
>gi|3901432|gb|AAC78643.1| ribulose-1,5-bisphosphate carboxylase small subunit [Avena
vaviloviana]
Length = 168
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|406366460|gb|AFS41727.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366474|gb|AFS41734.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium barbadense]
gi|406366490|gb|AFS41742.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
Length = 182
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|1352821|sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|450505|emb|CAA38026.1| ribulose bisphosphate carboxylase [Gossypium hirsutum]
gi|371942044|gb|AEX60834.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium hirsutum]
gi|406366448|gb|AFS41721.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium arboreum]
gi|406366458|gb|AFS41726.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366488|gb|AFS41741.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
gi|406366504|gb|AFS41749.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium mustelinum]
gi|406366516|gb|AFS41755.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 182
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|132097|sp|P00869.1|RBS2_PEA RecName: Full=Ribulose bisphosphate carboxylase small chain 3C,
chloroplastic; Short=RuBisCO small subunit 3C; AltName:
Full=PSS15; Flags: Precursor
gi|20857|emb|CAA27865.1| ribulose 1.5-bisphosphate carboxylase (RBC) [Pisum sativum]
gi|20859|emb|CAA25390.1| ribulose bisphosphate carboxylase [Pisum sativum]
gi|225289|prf||1211236B carboxylase,ribulose bisphosphate
Length = 180
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 112/161 (69%), Gaps = 5/161 (3%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
+A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP
Sbjct: 21 SAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLP 76
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCND 125
L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFG D
Sbjct: 77 PLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTD 136
Query: 126 SSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+SQ+L E+ E AYP A++R + F+N +Q QC+SF+ P
Sbjct: 137 ASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
>gi|585786|sp|P16032.2|RBS1_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|304442|gb|AAA03693.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
gi|228311|prf||1802403A RuBisCO:SUBUNIT=small
Length = 182
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S A PV + +NG + +CM+ W P+ KKFE LSYLP LS++S+ KE
Sbjct: 29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKE 86
Query: 77 IDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E
Sbjct: 87 VQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 146
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 147 AKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 179
>gi|168045558|ref|XP_001775244.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673457|gb|EDQ59980.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
Query: 31 SIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLE 90
S A S +V NGS+ +CM+ WNPI KFE SYLP LSDDSIAK+++YM+++G IPCLE
Sbjct: 45 SKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDSIAKQVEYMIQQGLIPCLE 104
Query: 91 FD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLA 149
FD V R N+ PGYYDGRYWTMWKLPMFGC DSSQ+L EI+ECKK +P ++R L
Sbjct: 105 FDVNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSSQVLREIEECKKTFPGCFVRILG 164
Query: 150 FNNQKQGQCMSFLIQKP 166
F+N KQ Q FL+ +P
Sbjct: 165 FDNVKQVQICGFLVARP 181
>gi|132098|sp|P04715.1|RBS2_PETHY RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A,
chloroplastic; Short=RuBisCO small subunit SSU11A;
Flags: Precursor
gi|68085|pir||RKPJS1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
(ssu11A) precursor - garden petunia
gi|20493|emb|CAA27445.1| ribulose 1,5-bisphosphate carboxylase [Petunia x hybrida]
Length = 180
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 111/153 (72%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK + + K ++ +S SNG + +CM+ W P KK+E LSYLP L+D+ +
Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLL 84
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 85 KEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGEL 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE KKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 145 QEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177
>gi|132094|sp|P19308.1|RBS2_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU26,
chloroplastic; Short=RuBisCO small subunit SSU26; Flags:
Precursor
gi|295817|emb|CAA35101.1| ribulose bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 99/128 (77%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG K CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+R
Sbjct: 50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
EN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169
Query: 160 SFLIQKPT 167
SF+ KPT
Sbjct: 170 SFIAYKPT 177
>gi|76574238|gb|ABA46900.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 27 FTGLKSTS-AFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 85
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 86 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 145
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A+IR + F+N +Q QC+SF+ KP
Sbjct: 146 ECKKEYPKAFIRIIGFDNNRQVQCISFIAFKP 177
>gi|167268|gb|AAA33035.1| ribulose-1-5-bisphosphate carboxylase [Mesembryanthemum
crystallinum]
Length = 182
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S A PV + +NG + +CM+ W P+ KKFE LSYLP LS++S+ KE
Sbjct: 29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKE 86
Query: 77 IDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E
Sbjct: 87 VQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELRE 146
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 147 AKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 179
>gi|28139169|gb|AAO25119.1| ribulose-1,5-bisphosphate carboxylase small subunit [Chrysanthemum
x morifolium]
Length = 179
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S PV S SNG + +CMK W P+ KK+E LSYLP L++ +A
Sbjct: 26 FTGLK--SNVAFPVTKKSNDFSSLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLA 83
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+L+ W+PCLEF+ E G+ +REN++ PGYYDGRYWTMWKLPMFGCND+SQ+L E+
Sbjct: 84 KEVEYLLRNKWVPCLEFELEHGFPYRENNRSPGYYDGRYWTMWKLPMFGCNDASQVLKEL 143
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP +++R + F+N +Q QC+SF+ KP
Sbjct: 144 NECKKEYPQSWVRIIGFDNVRQVQCISFIAHKP 176
>gi|406366536|gb|AFS41765.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium armourianum]
gi|406366540|gb|AFS41767.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium davidsonii]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 99/124 (79%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 44 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 103
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 104 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 163
Query: 159 MSFL 162
+SF+
Sbjct: 164 ISFI 167
>gi|132116|sp|P19311.1|RBS5_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU5A,
chloroplastic; Short=RuBisCO small subunit SSU5A; Flags:
Precursor
gi|295820|emb|CAA35099.1| ribulose bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 99/128 (77%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+R
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
EN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169
Query: 160 SFLIQKPT 167
SF+ KPT
Sbjct: 170 SFIAYKPT 177
>gi|357146204|ref|XP_003573910.1| PREDICTED: ribulose bisphosphate carboxylase small chain PW9,
chloroplastic-like [Brachypodium distachyon]
Length = 175
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 116/161 (72%), Gaps = 3/161 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYL 65
+A A + + GLK T A LP+ + S + +VSNG + RCM+ W KKFE LSYL
Sbjct: 8 SAATAVAPFQGLKST--AGLPIGRRSASAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYL 65
Query: 66 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCND 125
P L+ +S+ K+I+Y+++ W+PCLEF +VG+V RE+ PGYYDGRYWTMWKLPMFGC D
Sbjct: 66 PPLTVESLLKQIEYLIRSKWVPCLEFSKVGFVFREHGNSPGYYDGRYWTMWKLPMFGCTD 125
Query: 126 SSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
++Q+L E++E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 126 ATQVLKELEEVKKEYPDAYVRIIGFDNTRQVQCISFIAFKP 166
>gi|6409339|gb|AAF07947.1|AF192778_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena sterilis
subsp. ludoviciana]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP L+++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|4038695|dbj|BAA35164.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Avena sativa]
Length = 165
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVGRRSNAGLGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|6409331|gb|AAF07943.1|AF192774_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
strigosa]
gi|6409333|gb|AAF07944.1|AF192775_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
strigosa]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F N +Q QC+SF+ KP
Sbjct: 130 EVKKKYPDAYVRIIGFVNIRQVQCVSFIAFKP 161
>gi|132117|sp|P19312.1|RBS6_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU5B,
chloroplastic; Short=RuBisCO small subunit SSU5B; Flags:
Precursor
gi|295821|emb|CAA35100.1| ribulose bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 99/128 (77%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+R
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
EN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169
Query: 160 SFLIQKPT 167
SF+ KPT
Sbjct: 170 SFIAYKPT 177
>gi|13241101|gb|AAK16227.1|AF044395_1 ribulose-1,5-bisphosphate carboxylase small subunit R1 [Flaveria
ramosissima]
Length = 131
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 102/128 (79%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+
Sbjct: 1 SNGGRVQCMKVWPPLGKKKYETLSYLPNLTETQLAKEVDYLLRNKWVPCLEFELEHGFVY 60
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN + PGYYDGRYWTMWKLPMFGC DSSQ++ E+ ECKK YP A+IR + F+N +Q QC
Sbjct: 61 RENHRSPGYYDGRYWTMWKLPMFGCTDSSQVMKELGECKKEYPQAWIRIIGFDNVRQVQC 120
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 121 ISFIASKP 128
>gi|6409335|gb|AAF07945.1|AF192776_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena clauda]
gi|6409341|gb|AAF07948.1|AF192779_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
maroccana]
Length = 168
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 106/145 (73%)
Query: 22 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYML 81
S A LPV +VSNG + RCM+ W KKFE LSYLP LS++++ K+ID+++
Sbjct: 17 STAGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALLKQIDFLI 76
Query: 82 KKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYP 141
+ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KK YP
Sbjct: 77 RSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVEEVKKEYP 136
Query: 142 NAYIRCLAFNNQKQGQCMSFLIQKP 166
+AY+R + F+N +Q QC+SF+ KP
Sbjct: 137 DAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|4038663|dbj|BAA35148.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 165
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FHGLKST--AGLPVSRRSSGSLGRVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK Y +AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYSDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|132161|sp|P17673.1|RBS_TRIRP RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|295846|emb|CAA36542.1| ribulose bisphosphate carboxylase [Trifolium repens]
Length = 178
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 114/167 (68%), Gaps = 6/167 (3%)
Query: 4 SIFTAPVAG---SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
+I APV + + GLK S A PV + SNGS+ CM+ W P+ KKFE
Sbjct: 11 TINRAPVQANLATPFTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFE 68
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLP 119
LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ + PGYYDGRYWTMW+LP
Sbjct: 69 TLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLP 128
Query: 120 MFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+FG D++Q+L E+ ECK YP A+IR + F+N +Q QC+SF+ P
Sbjct: 129 LFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175
>gi|132083|sp|P04714.1|RBS1_PETHY RecName: Full=Ribulose bisphosphate carboxylase small chain SSU8,
chloroplastic; Short=RuBisCO small subunit SSU8; Flags:
Precursor
gi|68086|pir||RKPJS8 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain (ssu8)
precursor - garden petunia
gi|20491|emb|CAA27444.1| ribulose 1,5-bisphosphate carboxylase [Petunia x hybrida]
Length = 180
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 101/132 (76%), Gaps = 1/132 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
+ SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E
Sbjct: 46 TSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEH 105
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +
Sbjct: 106 GFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVR 165
Query: 155 QGQCMSFLIQKP 166
Q QC+SF+ KP
Sbjct: 166 QVQCISFIAYKP 177
>gi|164698713|gb|ABY66909.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Miscanthus x giganteus]
Length = 169
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 103/145 (71%)
Query: 22 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYML 81
S A LPV S VSNG + RCM+ W NKKFE LSYLP L+++ + K++DY+L
Sbjct: 21 STASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTEEQLLKQVDYLL 80
Query: 82 KKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYP 141
+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+SQ+ E QE +YP
Sbjct: 81 RNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKEPQEAIASYP 140
Query: 142 NAYIRCLAFNNQKQGQCMSFLIQKP 166
+AY+R L F+N +Q QC+SF+ KP
Sbjct: 141 DAYVRILGFDNIRQTQCVSFIAYKP 165
>gi|270383722|dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 181
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S + PV A + SNG + +CM+ W PI KKFE LSYLP LS + +
Sbjct: 28 FTGLK--SASAFPVTRKSADITSLASNGGRVQCMQVWPPIGKKKFETLSYLPPLSREELL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KEI+Y+L+ W+PCLEF+ E G+V+R+N K PGYYDGRYWTMWKLPMFGC D Q+ E+
Sbjct: 86 KEIEYLLRMNWVPCLEFELEKGFVYRDNHKSPGYYDGRYWTMWKLPMFGCTDPLQVFKEL 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E K YPNA++R + F+N++Q QC+SF+ KP
Sbjct: 146 DEAIKTYPNAFVRIIGFDNKRQVQCISFIAYKP 178
>gi|3914601|sp|O65194.1|RBS_MEDSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|3044116|gb|AAC13293.1| ribulose-1,5-bisphosphate carboxylase small subunit [Medicago
sativa]
Length = 180
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 112/154 (72%), Gaps = 4/154 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A PV K + + SNG + CM+ W P+ KKFE LSYLP L+++ +
Sbjct: 26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQL 83
Query: 74 AKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
AKE++Y+++KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMW+LP+FG DSSQ+L E
Sbjct: 84 AKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKE 143
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+ +CK YP+++IR + F+N +Q QC+SF+ P
Sbjct: 144 LADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177
>gi|6409329|gb|AAF07942.1|AF192773_1 ribulose-1,5-bisphosphate carboxylase small subunit [Avena
agadiriana]
Length = 168
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREYGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|347451|gb|AAA84592.1| ribulose 1,5-bisphosphate carboxylase [Oryza sativa]
Length = 169
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A +PV S VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 11 FQGLKST--AGMPVARRSNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLL 68
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ W+PCLEF +VG+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E++
Sbjct: 69 KQIEYLLRSKWVPCLEFSKVGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLKELE 128
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 129 EAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 160
>gi|585787|sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|304444|gb|AAA03694.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
Length = 180
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 108/155 (69%), Gaps = 3/155 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+
Sbjct: 25 FTGLK--SVSAFPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLM 82
Query: 75 KEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E+
Sbjct: 83 KEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAEL 142
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
+E KKAYP A+ R + F+N +Q QC+SF+ KP +
Sbjct: 143 EEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKPAS 177
>gi|357154841|ref|XP_003576920.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
gi|357154845|ref|XP_003576921.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
gi|357154848|ref|XP_003576922.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 3 [Brachypodium distachyon]
gi|357154851|ref|XP_003576923.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 4 [Brachypodium distachyon]
gi|357154854|ref|XP_003576924.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 5 [Brachypodium distachyon]
Length = 175
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + +S +VSNG + RCM+ W KKFE LSYLP LS +S+
Sbjct: 16 FQGLKST--AGLPVASRRSSNSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSVESL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EEVKKEYPDAYVRIIGFDNTRQVQCISFIAFKP 166
>gi|406366548|gb|AFS41771.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium gossypioides]
Length = 165
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 98/124 (79%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 41 SNGGRVQCMQVWPPTGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 100
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 101 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 160
Query: 159 MSFL 162
+SF+
Sbjct: 161 ISFI 164
>gi|168066786|ref|XP_001785313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|34915976|dbj|BAC87878.1| Ribulose bisphosphate carboxylase small chain [Physcomitrella
patens subsp. patens]
gi|162663096|gb|EDQ49881.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 108/152 (71%), Gaps = 8/152 (5%)
Query: 23 KALLPVKDSIAWSSKT-----VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + ++SK+ V NGS+ +CM+ WNPI KFE SYLP LSDD IA+++
Sbjct: 32 KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91
Query: 78 DYMLKKGWIPCLEFDEVGYVHREN---SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
DYM+++ IPC+EFD VG V R N S GYYDGRYWTMWKLPMFGC DSSQ+L EIQ
Sbjct: 92 DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECK +YP+ ++R L F+++KQ Q FL+ +P
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183
>gi|585788|sp|Q08183.1|RBS3_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|436487|gb|AAA03695.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
Length = 183
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE
Sbjct: 30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKE 87
Query: 77 IDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E
Sbjct: 88 VQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 147
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 148 AKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180
>gi|167272|gb|AAA33037.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
Length = 183
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE
Sbjct: 30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLIKE 87
Query: 77 IDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E
Sbjct: 88 VQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 147
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 148 AKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180
>gi|11990893|dbj|BAB19810.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 175
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S +VSNG + R M+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRRMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q++NE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 166
>gi|406366538|gb|AFS41766.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium armourianum]
gi|406366542|gb|AFS41768.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium davidsonii]
gi|406366544|gb|AFS41769.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium davidsonii]
Length = 165
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 98/124 (79%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VH
Sbjct: 41 SNGGRVQCMQVWPPTGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVH 100
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 101 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQC 160
Query: 159 MSFL 162
+SF+
Sbjct: 161 ISFI 164
>gi|327554106|gb|AEB00556.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Brassica juncea]
Length = 181
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 2 SASIFTAPVAG---SGYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV + + + SNG + CMK W P+ K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MW
Sbjct: 66 KFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWPMW 125
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP+FGC DS+Q+L E+QECK YPN +IR + F +Q QC+SF+ KP
Sbjct: 126 KLPLFGCADSAQVLKEVQECKTEYPNPFIRIIGFATTRQVQCISFIAYKP 175
>gi|168068057|ref|XP_001785912.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662411|gb|EDQ49270.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 6/150 (4%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + +SSK +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK++
Sbjct: 32 KAFSGLKSATLFSSKAQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91
Query: 78 DYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
+YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+EC
Sbjct: 92 EYMIQQNLIPCLEFDVNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEEC 151
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KK +P ++R L F+N KQ Q FL+ +P
Sbjct: 152 KKTFPGCFVRVLGFDNVKQVQICGFLVARP 181
>gi|3914585|sp|O22077.1|RBS_FAGCR RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|2588890|dbj|BAA23214.1| small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase
[Fagus crenata]
Length = 182
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ A + S + SNG + +CMK W P+ +KFE LSYLP LS +S+A
Sbjct: 28 FTGLKSTA-AFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLA 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y++ KGWIPCLEF+ E +V+REN++ PGYYDGRYW MWKLPMFGC D++Q+L E+
Sbjct: 87 KQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAEL 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
QE K YP ++IR + F+N++Q QC+SF+ KP
Sbjct: 147 QEASKTYPTSHIRIIGFDNKRQVQCISFIAYKP 179
>gi|79329200|ref|NP_001031981.1| ribulose bisphosphate carboxylase small chain 3B [Arabidopsis
thaliana]
gi|332006929|gb|AED94312.1| ribulose bisphosphate carboxylase small chain 3B [Arabidopsis
thaliana]
Length = 174
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 114/173 (65%), Gaps = 12/173 (6%)
Query: 2 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNK 57
SA++ T+P + + GLK S A PV ++ SNG + CMK W PI K
Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKK 65
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
KFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E+ PGYYDGRYWTMWK
Sbjct: 66 KFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFE------LEHGNTPGYYDGRYWTMWK 119
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
LP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF+ KP + T
Sbjct: 120 LPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 172
>gi|5763513|dbj|BAA83481.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Physcomitrella patens]
Length = 214
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 115/178 (64%), Gaps = 14/178 (7%)
Query: 3 ASIFTAPVA---GSGYLGLKPTS---KALLPVKDSIAWSSKT-----VSNGSKTRCMKTW 51
S APVA S +G S KA +K + +S KT V NGS+ +CM+ W
Sbjct: 36 VSTVVAPVALGGASSCVGAPSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVW 95
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHREN---SKMPGYY 108
NPI KFE SYLP L+DD IAK++DYM+++ IPC+EFD VG V R N + GYY
Sbjct: 96 NPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYY 155
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
DGRYWTMWKLPMFGC DSSQ+L EIQECK +P+ ++R L F+++KQ Q FL+ +P
Sbjct: 156 DGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213
>gi|3978511|gb|AAC83372.1| ribulose-1,5-bisphosphate carboxylase small subunit [Avena
agadiriana]
Length = 168
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIEFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + +N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGLDNIRQVQCVSFIAFKP 161
>gi|3978513|gb|AAC83373.1| ribulose-1,5-bisphosphate carboxylase small subunit [Avena
strigosa]
Length = 168
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+ KK YP+AY+R + F N +Q QC+SF+ KP
Sbjct: 130 DVKKKYPDAYVRIIGFVNIRQVQCVSFIAFKP 161
>gi|585789|sp|Q08184.1|RBS4_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
chloroplastic; Short=RuBisCO small subunit 4; Flags:
Precursor
gi|167274|gb|AAA33038.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
gi|436488|gb|AAA03696.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Mesembryanthemum crystallinum]
Length = 183
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE
Sbjct: 30 GLK--SISAFPVTRKNNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKE 87
Query: 77 IDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E
Sbjct: 88 VQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 147
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 148 AKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 180
>gi|3914588|sp|Q40004.1|RBS_HORVU RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|1167948|gb|AAA87039.1| ribulose-1,5-bisphosphate carboxylase small subunit [Hordeum
vulgare subsp. vulgare]
Length = 174
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV SS +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLK--STAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 73
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 74 KQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 133
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165
>gi|125551406|gb|EAY97115.1| hypothetical protein OsI_19041 [Oryza sativa Indica Group]
Length = 175
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|51949879|gb|AAU14862.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Fagus sylvatica]
Length = 181
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 102/128 (79%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ +KFE LSYLP LS +S+AK+I+Y++ KGWIPCLEF+ E +V+
Sbjct: 52 SNGGRVQCMKVWPPLGLQKFETLSYLPPLSLESLAKQIEYLILKGWIPCLEFELEHPFVY 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN++ PGYYDGRYW MWKLPMFGC D++Q+L E+QE K YP ++IR + F+N++Q QC
Sbjct: 112 RENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|168068055|ref|XP_001785911.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662410|gb|EDQ49269.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 6/150 (4%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + +SSK +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK++
Sbjct: 32 KAFSGLKSATLFSSKAQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91
Query: 78 DYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
+YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+EC
Sbjct: 92 EYMIQQNLIPCLEFDVNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEEC 151
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KK +P ++R L F+N KQ Q FL+ +P
Sbjct: 152 KKTFPGCFVRVLGFDNVKQVQICGFLVARP 181
>gi|132111|sp|P19310.1|RBS4_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU40B,
chloroplastic; Short=RuBisCO small subunit SSU40B;
Flags: Precursor
gi|295819|emb|CAA35103.1| ribulose bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 99/128 (77%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+R
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
EN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169
Query: 160 SFLIQKPT 167
SF+ KPT
Sbjct: 170 SFIAYKPT 177
>gi|3790104|gb|AAC67588.1| ribulose-1,5-bisphosphate carboxylase small subunit [Avena sterilis
subsp. ludoviciana]
Length = 168
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV +VSNG + RCM+ W KKFE LSYLP L+++++
Sbjct: 12 FQGLKST--AGLPVSRRSNAGLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF + G++ RE+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSQGGFIFREHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|168020434|ref|XP_001762748.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686156|gb|EDQ72547.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 98/134 (73%)
Query: 33 AWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD 92
A + +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK+++YM+++ IPCLEFD
Sbjct: 48 AQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFD 107
Query: 93 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+ECK +P Y+R L F+N
Sbjct: 108 NSNGVSRVNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKTTFPGCYVRVLGFDN 167
Query: 153 QKQGQCMSFLIQKP 166
KQ Q FL+ +P
Sbjct: 168 VKQVQICGFLVARP 181
>gi|168020266|ref|XP_001762664.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686072|gb|EDQ72463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 98/134 (73%)
Query: 33 AWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD 92
A + +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK+++YM+++ IPCLEFD
Sbjct: 48 AQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFD 107
Query: 93 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+ECK +P Y+R L F+N
Sbjct: 108 NSNGVSRVNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKTTFPGCYVRVLGFDN 167
Query: 153 QKQGQCMSFLIQKP 166
KQ Q FL+ +P
Sbjct: 168 VKQVQICGFLVARP 181
>gi|168047750|ref|XP_001776332.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168047818|ref|XP_001776366.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672292|gb|EDQ58831.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672326|gb|EDQ58865.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 108/154 (70%), Gaps = 8/154 (5%)
Query: 21 TSKALLPVKDSIAWSSKT-----VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
T KA +K + +SSKT V NGS+ +CM+ WNPI KFE SYLP L+DD IAK
Sbjct: 30 TVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 89
Query: 76 EIDYMLKKGWIPCLEFDEVGYVHREN---SKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
++DYM+++ IPC+EFD VG V R N + GYYDGRYWTMWKLPMFGC DSSQ+L E
Sbjct: 90 QVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLRE 149
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
IQECK +P+ ++R L F+++KQ Q FL+ +P
Sbjct: 150 IQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183
>gi|132078|sp|P00872.2|RBS1_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU1,
chloroplastic; Short=RuBisCO small subunit SSU1; Flags:
Precursor
gi|19408|emb|CAA35104.1| unnamed protein product [Lemna gibba]
Length = 173
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 100/128 (78%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
S+G + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+R
Sbjct: 46 SSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 105
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
EN+ PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+
Sbjct: 106 ENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 165
Query: 160 SFLIQKPT 167
SF+ KPT
Sbjct: 166 SFIAYKPT 173
>gi|357155405|ref|XP_003577109.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
gi|357155408|ref|XP_003577110.1| PREDICTED: ribulose bisphosphate carboxylase small chain PWS4.3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 174
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LP+ + S VSNG + CM+ W KKFE LSYLP LS +S+
Sbjct: 16 FQGLKST--AGLPLSRRSSNSLGRVSNGGRISCMQVWPIEGIKKFETLSYLPPLSVESLL 73
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L E++
Sbjct: 74 KQIEYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLKELE 133
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 134 EVKKEYPDAYVRIIGFDNTRQVQCISFIAFKP 165
>gi|20139858|sp|Q9XGX5.1|RBS2_AMAHP RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|5002363|gb|AAD37439.1|AF150666_1 ribulose 1,5 bisphosphate carboxylase small subunit precursor
[Amaranthus hypochondriacus]
Length = 184
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 108/154 (70%), Gaps = 3/154 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S A PV + SNG + +CM+ W P+ KKFE LSYLP LSD + +
Sbjct: 32 GLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQ 89
Query: 77 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L KGWIPC+EF+ E +V+REN + PGY DGRYWTMWKLPM+GC D +Q+LNE++E
Sbjct: 90 VQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEE 149
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
KKAYP A+IR + F+N++Q QC+SF+ KP +
Sbjct: 150 AKKAYPTAFIRIIGFDNKRQVQCVSFIAYKPADS 183
>gi|168016916|ref|XP_001760994.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687680|gb|EDQ74061.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 95/126 (75%)
Query: 41 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRE 100
NGS+ CM+ WNPI KFE SYLP LSDD+IAK+++YM+++ IPCLEFD V RE
Sbjct: 55 NGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNSKGVTRE 114
Query: 101 NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+ECKK +P ++R L F+N KQ Q
Sbjct: 115 NNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICG 174
Query: 161 FLIQKP 166
FL+ +P
Sbjct: 175 FLVARP 180
>gi|24940138|emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Coffea arabica]
gi|24940140|emb|CAD11991.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Coffea arabica]
Length = 181
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 107/151 (70%), Gaps = 3/151 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S P+ + +NG + +CM+ W P KK+E LSYLP L+D+ + KE
Sbjct: 30 GLKAASS--FPISKKSVDITSLATNGGRVQCMQVWPPRGLKKYETLSYLPDLTDEQLLKE 87
Query: 77 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
IDY+++ GW+PCLEF+ E G+V+RE + PGYYDGRYWTMWKLPM+GC D++Q+LNE+ E
Sbjct: 88 IDYLIRSGWVPCLEFELEKGFVYREYHRSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGE 147
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
C K YPN ++R + F+N +Q QC+SF+ KP
Sbjct: 148 CLKEYPNCWVRIIGFDNVRQVQCISFIAAKP 178
>gi|406366530|gb|AFS41762.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium herbaceum]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 98/124 (79%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 44 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 103
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC
Sbjct: 104 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQC 163
Query: 159 MSFL 162
+SF+
Sbjct: 164 ISFI 167
>gi|76574240|gb|ABA46901.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 181
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 28 FTGLKSTS-AFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLL 86
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D++Q+ E++
Sbjct: 87 KQIEYLLRSKWIPCLEFSHEGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELE 146
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECKK YP A++ + F+N +Q QC+SF+ KP
Sbjct: 147 ECKKEYPRAFVGIIGFDNNRQVQCISFIAHKP 178
>gi|168041645|ref|XP_001773301.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675343|gb|EDQ61839.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 179
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 109/155 (70%), Gaps = 8/155 (5%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + S A +V NGS+ +CM+ WNPI KFE SYLP L+DD IA
Sbjct: 29 FSGLKSTT-----LSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIA 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPG---YYDGRYWTMWKLPMFGCNDSSQILN 131
K++D+M+++ IPC+EFD VG V R N PG YYDGRYWTMWKLPMFGC DS+Q+L
Sbjct: 84 KQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLR 143
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
EIQECK+++P+ ++R L F+++KQ Q FL+ +P
Sbjct: 144 EIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178
>gi|115488144|ref|NP_001066559.1| Os12g0274700 [Oryza sativa Japonica Group]
gi|122234140|sp|Q0INY7.1|RBS1_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=Ribulose bisphosphate carboxylase
small chain C; Short=RuBisCO small subunit;
Short=RuBisCO small subunit C; Flags: Precursor
gi|158513174|sp|A2Y205.2|RBS1_ORYSI RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=Ribulose bisphosphate carboxylase
small chain C; Short=RuBisCO small subunit;
Short=RuBisCO small subunit C; Flags: Precursor
gi|218208|dbj|BAA00538.1| small subunit of ribulose-1,5-bisphosphate carboxylase [Oryza
sativa Japonica Group]
gi|2407283|gb|AAB70544.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oryza sativa
Indica Group]
gi|77554260|gb|ABA97056.1| Ribulose bisphosphate carboxylase small chain C, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|113649066|dbj|BAF29578.1| Os12g0274700 [Oryza sativa Japonica Group]
gi|149392066|gb|ABR25908.1| chloroplast ribulose bisphosphate carboxylase small chain precursor
[Oryza sativa Indica Group]
gi|215692618|dbj|BAG88038.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767359|dbj|BAG99587.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768262|dbj|BAH00491.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630752|gb|EEE62884.1| hypothetical protein OsJ_17688 [Oryza sativa Japonica Group]
gi|226375|prf||1508256A ribulose bisphosphate carboxylase S
Length = 175
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|358347598|ref|XP_003637843.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355503778|gb|AES84981.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 181
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A PV + SNG + CM+ W PI KKFE LSYLP L+
Sbjct: 24 AVAPFVGLK--SMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ +AKE++Y+++KGW+ CLEF+ E G+V+REN PGYYDGRYWTMWKLP+FG D+SQ+
Sbjct: 82 EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
L E+ E AYPNA++R + F+N +Q QC+SF+ P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178
>gi|217075090|gb|ACJ85905.1| unknown [Medicago truncatula]
gi|388491562|gb|AFK33847.1| unknown [Medicago truncatula]
Length = 181
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A PV + SNG + CM+ W PI KKFE LSYLP L+
Sbjct: 24 AVAPFVGLK--SMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ +AKE++Y+++KGW+ CLEF+ E G+V+REN PGYYDGRYWTMWKLP+FG D+SQ+
Sbjct: 82 EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
L E+ E AYPNA++R + F+N +Q QC+SF+ P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178
>gi|6272550|gb|AAF06100.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
Length = 184
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS K S +S SNG + +CM+ W KKFE LSYLP LS + +A
Sbjct: 28 FTGLKSTSAFTATTKTSADITS-LASNGGRVQCMQVWPTRGKKKFETLSYLPPLSREQLA 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EIDY+L+ GWIPCLEF+ E G+V+R + +PGYYDGRYWTMWKLPMFGC DSSQ+L E+
Sbjct: 87 SEIDYLLRSGWIPCLEFELEHGFVYRAHGSLPGYYDGRYWTMWKLPMFGCTDSSQVLKEL 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
E KA+P+ + R + F+N +Q QC+SF+ KP T
Sbjct: 147 DELIKAHPDGFARIIGFDNVRQVQCISFIAYKPPGT 182
>gi|224127464|ref|XP_002329284.1| predicted protein [Populus trichocarpa]
gi|118488169|gb|ABK95904.1| unknown [Populus trichocarpa]
gi|118488741|gb|ABK96181.1| unknown [Populus trichocarpa]
gi|222870738|gb|EEF07869.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 112/151 (74%), Gaps = 2/151 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK TS + K + +S SNG + +CM+ W P KKFE LSYLP L+ + +A+E
Sbjct: 29 GLKSTSAFPVTRKANNDITS-IASNGGRVQCMQVWPPTGLKKFETLSYLPDLTTEQLAQE 87
Query: 77 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
I+Y+L+ W+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC ++SQ+L E++E
Sbjct: 88 IEYLLRNKWVPCLEFELEKGWVYREHHQSPGYYDGRYWTMWKLPMFGCTEASQVLIELEE 147
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KKAYPN++IR + F+N +Q QC+SF+ KP
Sbjct: 148 AKKAYPNSFIRIIGFDNTRQVQCISFIASKP 178
>gi|118489530|gb|ABK96567.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 181
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 2/151 (1%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK TS + K + +S SNG + +CM+ W P KKFE LSYLP L+ + +A+E
Sbjct: 29 GLKSTSAFPVTRKANNDITS-IASNGGRVQCMQVWPPTGLKKFETLSYLPDLTTEQLARE 87
Query: 77 IDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
I+Y+L+ W+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC ++SQ+L E++E
Sbjct: 88 IEYLLRNKWVPCLEFELEKGWVYREHHQSPGYYDGRYWTMWKLPMFGCTEASQVLIELEE 147
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KKAYPN+++R + F+N +Q QC+SF+ KP
Sbjct: 148 AKKAYPNSFVRIIGFDNTRQVQCISFIASKP 178
>gi|168033061|ref|XP_001769035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679669|gb|EDQ66113.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 6/150 (4%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + +SSK +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK++
Sbjct: 32 KAFSGLKSTTLFSSKAQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91
Query: 78 DYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
+YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+EC
Sbjct: 92 EYMIQQKLIPCLEFDVNANGVSRANNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEEC 151
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KK +P ++R L F+N KQ Q FL+ +P
Sbjct: 152 KKTFPGCFVRVLGFDNVKQVQICGFLVARP 181
>gi|1405796|emb|CAA67061.1| ribulose-bisphosphate carboxylase [Pteris vittata]
Length = 174
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 96/130 (73%)
Query: 38 TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYV 97
+SNGS+ M W P +NKKFE LSYLP L++D IAK+++YM++KGW PC+EFD +G V
Sbjct: 44 AISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSV 103
Query: 98 HRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ 157
+RE+ GYYDGRYW MWKLPMFGC DS +L EI EC K YP A+IR L F+ ++Q Q
Sbjct: 104 YREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQ 163
Query: 158 CMSFLIQKPT 167
FL++KP+
Sbjct: 164 VAGFLVKKPS 173
>gi|11990901|dbj|BAB19814.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 175
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A LPV + S + +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLK--STAGLPVSRRSSSAGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE+
Sbjct: 74 LKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 134 EEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 166
>gi|4038699|dbj|BAA35166.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Aegilops speltoides]
Length = 154
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 108/145 (74%), Gaps = 2/145 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVGRRSSGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L+E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLSEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCM 159
E KK YP+AY+R + F+N +Q QC+
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCV 154
>gi|357460041|ref|XP_003600302.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355489350|gb|AES70553.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 181
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A PV + SNG + CM+ W PI KKFE LSYLP L+
Sbjct: 24 AVAPFVGLK--SMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ +AKE++Y+++KGW+ CLEF+ E G+V+REN PGYYDGRYWTMWKLP+FG D+SQ+
Sbjct: 82 EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
L E+ E AYPNA++R + F+N +Q QC+SF+ P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178
>gi|333776970|dbj|BAK23964.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 170
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 111/154 (72%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPA 167
>gi|284433770|gb|ADB85091.1| ribulose 1,5-bisphosphate carboxylase small subunit [Jatropha
curcas]
Length = 181
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 109/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A P + + + NG + +CMK W KKFE LSYLP L+ + +A
Sbjct: 28 FTGLK--STAGFPARKTTNDITSIAGNGGRVQCMKVWPTQGLKKFETLSYLPPLTREQLA 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+L+ GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D+ Q+LNE+
Sbjct: 86 KEVEYLLRSGWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVLNEL 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KA+PN ++R + F++ +Q QC+SF+ KP
Sbjct: 146 DEAIKAHPNGFVRIIGFDSYRQVQCISFIAYKP 178
>gi|4038725|dbj|BAA35179.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Bromus catharticus]
Length = 164
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 5/153 (3%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S VS+G + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLKST--AGLPVSRRSTGLGS--VSSGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 67
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+IDY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D+SQ++ E+
Sbjct: 68 LKQIDYLIRSKWVPCLEFSKVGFVFREHNASPGYYDGRYWTMWKLPMFGCTDASQVIKEL 127
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 128 EEVKKEYPDAYVRIIGFDNLRQVQCVSFIAFKP 160
>gi|21050|emb|CAA42618.1| ribulose bisphosphate carboxylase [Phaseolus vulgaris]
gi|21053|emb|CAA40339.1| small subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase
[Phaseolus vulgaris]
Length = 180
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 113/161 (70%), Gaps = 8/161 (4%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
AP G LG P+ K + + I + +NG + +C++ W + KKFE LSYLP
Sbjct: 24 VAPFTGLKSLGGFPSRK----MNNDI---TSVANNGGRVQCIQVWPTVGKKKFETLSYLP 76
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCND 125
L+ +AKE+DY+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFGC D
Sbjct: 77 PLTKQQLAKEVDYLLRKGWVPCLEFELEHGFVYREHNKSPGYYDGRYWTMWKLPMFGCTD 136
Query: 126 SSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
SSQ+L E+ E + A+P+ +IR + F+N +Q QC+SF+ KP
Sbjct: 137 SSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKP 177
>gi|168041707|ref|XP_001773332.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675374|gb|EDQ61870.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 179
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 100/132 (75%), Gaps = 3/132 (2%)
Query: 38 TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYV 97
+V NGS+ +CM+ WNPI KFE SYLP L+DD IAK++D+M+++ IPC+EFD VG V
Sbjct: 47 SVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSV 106
Query: 98 HRENSKMPG---YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
R N PG YYDGRYWTMWKLPMFGC DS+Q+L EIQECK+++P+ ++R L F+++K
Sbjct: 107 SRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKK 166
Query: 155 QGQCMSFLIQKP 166
Q Q FL+ +P
Sbjct: 167 QVQICGFLVARP 178
>gi|132103|sp|P19309.1|RBS3_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU40A,
chloroplastic; Short=RuBisCO small subunit SSU40A;
Flags: Precursor
gi|295818|emb|CAA35102.1| ribulose bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 98/127 (77%)
Query: 41 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRE 100
NG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+RE
Sbjct: 51 NGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRE 110
Query: 101 NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
N PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+S
Sbjct: 111 NHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCIS 170
Query: 161 FLIQKPT 167
F+ KPT
Sbjct: 171 FIAYKPT 177
>gi|20139857|sp|Q9XGX4.1|RBS3_AMAHP RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|5002365|gb|AAD37440.1|AF150667_1 ribulose 1,5 bisphosphate carboxylase small subunit precursor
[Amaranthus hypochondriacus]
Length = 180
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%), Gaps = 12/175 (6%)
Query: 1 MSASIFTAPVAGSG--------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWN 52
MS +I TA V SG + GLK S A PV + SNG + +CM+ W
Sbjct: 6 MSNAI-TAVVGASGAQANMVAPFNGLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWP 62
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
P+ KKFE LSYLP LSD + ++ Y+L GWIPC+EF+ E +V+REN + PGY DGR
Sbjct: 63 PVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGR 122
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YWTMWKLPM+GC D +Q+LNE++E KKAYP+A+IR + F+N++Q QC+SF+ KP
Sbjct: 123 YWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKP 177
>gi|3914598|sp|O24045.1|RBS_MUSAC RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|2258433|gb|AAB63287.1| ribulose-1,5-bisphosphate carboxylase small subunit [Musa
acuminata]
Length = 180
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 109/154 (70%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S + PV + A S SNG + +CMK W KKFE LSYLP++ D+++
Sbjct: 27 FTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEAL 84
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q+ E+
Sbjct: 85 VKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+ECKK YP+A+IR + F+N +Q QC+SF+ KPT
Sbjct: 145 EECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPT 178
>gi|358345814|ref|XP_003636970.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355502905|gb|AES84108.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 181
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A P+ + SNG + CM+ W PI KKFE LSYLP L+
Sbjct: 24 AVAPFVGLK--SMAGFPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ +AKE++Y+++KGW+ CLEF+ E G+V+REN PGYYDGRYWTMWKLP+FG D+SQ+
Sbjct: 82 EQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQV 141
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
L E+ E AYPNA++R + F+N +Q QC+SF+ P
Sbjct: 142 LKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178
>gi|6409426|gb|AAF07985.1|AF200303_1 ribulose-1,5-bisphosphate carboxylase small subunit, partial [Avena
clauda]
Length = 168
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK T+ + + + S VSNG + RCM+ W KKFE LSYLP LS++++
Sbjct: 12 FQGLKSTAGLAVSRRSNAGLGS--VSNGGRIRCMQVWPIEGIKKFETLSYLPPLSEEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+ID++++ W+PCLEF +VG++ R + PGYYDGRYWTMWKLPMFGC D+SQ++ E++
Sbjct: 70 KQIDFLIRSKWVPCLEFSKVGFIFRVHGSTPGYYDGRYWTMWKLPMFGCTDASQVIKEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 130 EVKKEYPDAYVRIIGFDNIRQVQCVSFIAFKP 161
>gi|146724107|gb|ABQ42552.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|238801314|gb|ACR56377.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 109/154 (70%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S + PV + A S SNG + +CMK W KKFE LSYLP+L D+++
Sbjct: 27 FTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGLKKFETLSYLPTLKDEAL 84
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q+ E+
Sbjct: 85 LKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+ECKK YP+A+IR + F+N +Q QC+SF+ KPT
Sbjct: 145 EECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPT 178
>gi|168059634|ref|XP_001781806.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666713|gb|EDQ53360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 183
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 107/152 (70%), Gaps = 8/152 (5%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + +SS+ +V NGS+ +CM+ WNPI KFE SYLP L+DD IAK++
Sbjct: 31 KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90
Query: 78 DYMLKKGWIPCLEFDEVGYVHREN---SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
DYM+++ IPC+EFD VG V R N + GYYDGRYWTMWKLPMFGC DSSQ+L EIQ
Sbjct: 91 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
ECK +P+ ++R L F+++KQ Q FL+ +P
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182
>gi|3914583|sp|Q43832.1|RBS2_SPIOL RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|1297052|emb|CAA66201.1| ribulose-bisphosphate carboxylase [Spinacia oleracea]
Length = 180
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W N K++E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+
Sbjct: 50 SNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVY 109
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLPMFGC D +Q+LNE++ECKK YPNA+IR + F++ +Q QC
Sbjct: 110 REHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQC 169
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 170 VSFIAYKP 177
>gi|6272548|gb|AAF06098.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
gi|6272551|gb|AAF06101.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
Length = 184
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS K S +S SNG + +CM+ W KKFE LSYLP LS + +A
Sbjct: 28 FTGLKSTSAFPATTKTSADITS-LASNGGRVQCMQVWPTRGKKKFETLSYLPPLSREQLA 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
EIDY+L+ GWIPCLEF+ E G+V+R + +PGYYDGRYWTMWKLPMFGC DSSQ+L E+
Sbjct: 87 SEIDYLLRSGWIPCLEFELEHGFVYRAHGSLPGYYDGRYWTMWKLPMFGCTDSSQVLKEL 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
E KA+P+ + R + F+N +Q QC+SF+ KP T
Sbjct: 147 DELIKAHPDGFARIIGFDNVRQVQCISFIAYKPPGT 182
>gi|3914589|sp|Q42516.1|RBS1_AMAHP RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|5002361|gb|AAD37438.1|AF150665_1 ribulose 1,5 bisphosphate carboxylase small subunit precursor
[Amaranthus hypochondriacus]
gi|809533|emb|CAA60636.1| ribulose 1,5-bisphosphate carboxylase-oxygenase [Amaranthus
hypochondriacus]
Length = 183
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 110/153 (71%), Gaps = 4/153 (2%)
Query: 17 GLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAK 75
GLK S A P+ K S S SNG + +CM+ W P+ KKFE LSYLP LSD +
Sbjct: 30 GLK--SFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLA 87
Query: 76 EIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
++ Y+L KGWIPC+EF+ E +V+REN + PGY DGRYWTMWKLPM+GC D +Q+LNE++
Sbjct: 88 QVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVE 147
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
E KKAYP+A+IR + F+N++Q QC+SF+ KP
Sbjct: 148 EAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPA 180
>gi|2529378|gb|AAB81105.1| ribulose 1,5-bisphosphate carboxylase small subunit [Spinacia
oleracea]
Length = 180
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W N K++E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+
Sbjct: 50 SNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVY 109
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLPMFGC D +Q+LNE++ECKK YPNA+IR + F++ +Q QC
Sbjct: 110 REHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQC 169
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 170 VSFIAYKP 177
>gi|115488240|ref|NP_001066607.1| Os12g0292400 [Oryza sativa Japonica Group]
gi|77554383|gb|ABA97179.1| Ribulose bisphosphate carboxylase small chain C, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|77554384|gb|ABA97180.1| Ribulose bisphosphate carboxylase small chain C, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|113649114|dbj|BAF29626.1| Os12g0292400 [Oryza sativa Japonica Group]
gi|125579070|gb|EAZ20216.1| hypothetical protein OsJ_35820 [Oryza sativa Japonica Group]
gi|149390921|gb|ABR25478.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
gi|215687018|dbj|BAG90832.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215687290|dbj|BAG91855.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 175
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + S VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVNRRSSSSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|115488238|ref|NP_001066606.1| Os12g0291400 [Oryza sativa Japonica Group]
gi|77554377|gb|ABA97173.1| Ribulose bisphosphate carboxylase small chain A, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|108862507|gb|ABG21973.1| Ribulose bisphosphate carboxylase small chain A, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|113649113|dbj|BAF29625.1| Os12g0291400 [Oryza sativa Japonica Group]
gi|125579068|gb|EAZ20214.1| hypothetical protein OsJ_35814 [Oryza sativa Japonica Group]
gi|215704569|dbj|BAG94202.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 175
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + +VSNG + CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSNSAGLGSVSNGGRISCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|115488234|ref|NP_001066604.1| Os12g0291100 [Oryza sativa Japonica Group]
gi|109940134|sp|P18566.2|RBS2_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase small chain A,
chloroplastic; Short=RuBisCO small subunit A; Flags:
Precursor
gi|38374128|gb|AAR19268.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Oryza sativa Japonica Group]
gi|77554373|gb|ABA97169.1| Ribulose bisphosphate carboxylase small chain A, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|108862508|gb|ABG21974.1| Ribulose bisphosphate carboxylase small chain A, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|108862509|gb|ABG21975.1| Ribulose bisphosphate carboxylase small chain A, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|113649111|dbj|BAF29623.1| Os12g0291100 [Oryza sativa Japonica Group]
gi|149391337|gb|ABR25686.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
gi|218186697|gb|EEC69124.1| hypothetical protein OsI_38042 [Oryza sativa Indica Group]
gi|222616937|gb|EEE53069.1| hypothetical protein OsJ_35811 [Oryza sativa Japonica Group]
gi|347737186|gb|AEP20544.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Oryza sativa Japonica Group]
Length = 175
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 111/153 (72%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|406366550|gb|AFS41772.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypioides kirkii]
gi|406366552|gb|AFS41773.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypioides kirkii]
Length = 168
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYL L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 44 SNGGRVQCMQVWPPTGKKKFETLSYLLDLTPLQLAKEVDYLLRSKWIPCLEFELEDGFVH 103
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E+ ECKKAYPNA+IR + F+N +Q QC
Sbjct: 104 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLKELDECKKAYPNAFIRIIGFDNVRQVQC 163
Query: 159 MSFL 162
+SF+
Sbjct: 164 ISFI 167
>gi|116791718|gb|ABK26083.1| unknown [Picea sitchensis]
Length = 159
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 94/123 (76%)
Query: 44 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSK 103
+ RCM+ W P NN KFE LSYLP L+ + + KE++Y+L+ W+PCLEFDE G + R+
Sbjct: 34 RVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGS 93
Query: 104 MPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYP A+IR + F+N +Q QC+SF++
Sbjct: 94 TPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIV 153
Query: 164 QKP 166
KP
Sbjct: 154 HKP 156
>gi|169156|gb|AAA33686.1| ribulose 1,5-bisphosphate carboxylase small subunit propeptide,
partial [Pisum sativum]
Length = 156
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Query: 26 LPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGW 85
PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW
Sbjct: 12 FPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGW 71
Query: 86 IPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAY 144
+PCLEF+ E G+V+RE++K P YYDGRYWTMWKLPMFG D+SQ+L E+ E AYP A+
Sbjct: 72 VPCLEFELEKGFVYREHNKSPRYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAF 131
Query: 145 IRCLAFNNQKQGQCMSFLIQKPTT 168
+R + F+N +Q QC+SF+ P +
Sbjct: 132 VRIIGFDNVRQVQCISFIAHTPES 155
>gi|125536346|gb|EAY82834.1| hypothetical protein OsI_38046 [Oryza sativa Indica Group]
Length = 175
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + S VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKFT--AGLPVNRRSSSSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|11990899|dbj|BAB19813.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 173
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + + NG + RCM+ W KKFE LSYLP LS +++
Sbjct: 16 FQGLK--STAGLPVSRRSS-EPRPRHNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 72
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 73 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 132
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R F+N +Q QC+SF+ +P
Sbjct: 133 EVKKEYPDAYVRVNGFDNLRQVQCVSFIAFRP 164
>gi|224284074|gb|ACN39774.1| unknown [Picea sitchensis]
Length = 136
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 96/132 (72%)
Query: 35 SSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV 94
+K + RCM+ W P NN KFE LSYLP L+ + + KE++Y+LK W+PCLEFDE
Sbjct: 2 GAKDNEQRRRVRCMQVWPPYNNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDED 61
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G + R+ PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYP A+IR + F+N +
Sbjct: 62 GIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVR 121
Query: 155 QGQCMSFLIQKP 166
Q QC+SF++ KP
Sbjct: 122 QVQCISFIVHKP 133
>gi|168023160|ref|XP_001764106.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168023306|ref|XP_001764179.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684546|gb|EDQ70947.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684619|gb|EDQ71020.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 31 SIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLE 90
S A + +V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK+++YM+++ IPCLE
Sbjct: 45 SKAETLSSVQNGSRVQCMQVWNPIGQTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLE 104
Query: 91 FD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLA 149
FD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+ECKK +P ++R L
Sbjct: 105 FDVNSNGVSRANNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLG 164
Query: 150 FNNQKQGQCMSFLIQKP 166
F+N KQ Q FL+ +P
Sbjct: 165 FDNVKQVQICGFLVARP 181
>gi|62176930|emb|CAG25595.1| putative rubisco small subunit [Triticum durum]
Length = 170
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 99/126 (78%)
Query: 41 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRE 100
NG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG+V RE
Sbjct: 36 NGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFRE 95
Query: 101 NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+S
Sbjct: 96 HNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVS 155
Query: 161 FLIQKP 166
F+ +P
Sbjct: 156 FIAFRP 161
>gi|315075926|gb|ADT78691.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Litchi chinensis]
Length = 188
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Query: 39 VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYV 97
SNG + +CM+ W P+ K FE LSYLP LS++ + KE++Y+L+ GWIPCLEF E +
Sbjct: 50 ASNGGRVQCMQVWPPVGKKFFETLSYLPPLSEEELLKEVNYLLRMGWIPCLEFQMEYPFP 109
Query: 98 HRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ 157
+REN ++P YYDGRYWTMWKLPMFGCND+SQ++ E+QE KK YP +++R L F+N++Q Q
Sbjct: 110 YRENCRVPTYYDGRYWTMWKLPMFGCNDASQVIKELQEAKKEYPTSHVRILGFDNKRQVQ 169
Query: 158 CMSFLIQKP 166
C+SF+ +P
Sbjct: 170 CISFIAYRP 178
>gi|86156014|gb|ABC86738.1| ribulose-1,5-bisphophate carboxylase/oxygenase small subunit [Vitis
pseudoreticulata]
Length = 180
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 109/163 (66%), Gaps = 7/163 (4%)
Query: 6 FTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYL 65
AP G L P ++ SIA SNG + RCMK W KFE LSYL
Sbjct: 24 MVAPFTGLKSLSTFPGTRKANTDITSIA------SNGGRVRCMKVWPTEGLMKFETLSYL 77
Query: 66 PSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCN 124
P L+D+ ++KE+DY+L+ WIPCLEF ++ Y HRE+++ PGYYDGRYWTMWKLPMFGC
Sbjct: 78 PPLTDEQLSKEVDYLLRMNWIPCLEFTKLYPYPHREHNRSPGYYDGRYWTMWKLPMFGCT 137
Query: 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
DS+Q++ E+QE + YPNA+IR + F+N +Q QC++F+ KP+
Sbjct: 138 DSAQVIKEVQEARTEYPNAHIRIIGFDNNRQVQCIAFIAYKPS 180
>gi|76574236|gb|ABA46899.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 108/154 (70%), Gaps = 3/154 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S + PV + A S SNG + +CMK W KKFE LSYLP+L D+++
Sbjct: 27 FTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTLKDEAL 84
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMW LPMFGC D+ Q+ E+
Sbjct: 85 LKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWNLPMFGCTDAVQVAKEV 144
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+ECKK YP+A+IR + F+N +Q QC+SF+ KPT
Sbjct: 145 EECKKEYPHAFIRIIGFDNNRQVQCVSFIAYKPT 178
>gi|4038717|dbj|BAA35175.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum dicoccoides]
Length = 165
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLK--STAGLPVGRRSSGSLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAYRP 161
>gi|168000577|ref|XP_001752992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695691|gb|EDQ82033.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 97/130 (74%), Gaps = 1/130 (0%)
Query: 38 TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGY 96
+V NGS+ +CM+ WNPI KFE SYLP LSDD+IAK+++YM+++ IPCLEFD
Sbjct: 54 SVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDVNSNG 113
Query: 97 VHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+ECKK +P Y+R L F+N KQ
Sbjct: 114 VSRVNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCYVRVLGFDNVKQV 173
Query: 157 QCMSFLIQKP 166
Q FL+ +P
Sbjct: 174 QICGFLVARP 183
>gi|168062277|ref|XP_001783108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665425|gb|EDQ52111.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 38 TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGY 96
+V NGS+ +CM+ WNPI KFE SYLP LSD++IAK+++YM+++ IPCLEFD
Sbjct: 52 SVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDEAIAKQVEYMIQQKLIPCLEFDLNSKG 111
Query: 97 VHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
V R+N+ PGYYDGRYWTMWKLPMFGCNDS+Q+L EIQECK +PN ++R L F+N KQ
Sbjct: 112 VSRDNNSSPGYYDGRYWTMWKLPMFGCNDSAQVLREIQECKTTFPNCWVRVLGFDNVKQV 171
Query: 157 QCMSFLIQKP 166
Q FL+ +P
Sbjct: 172 QICGFLVARP 181
>gi|336478223|emb|CBY05833.1| Ribulose 1,5-bisphosphate carboxylase small subunit precursor
[Coffea canephora]
gi|336478343|emb|CBY89197.1| ribulose 1,5-bisphosphate carboxylase small subunit precursor
[Coffea canephora]
Length = 181
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 105/153 (68%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S P+ + +NG + +CM+ W P K E SYLP L+D+ +
Sbjct: 28 FTGLKAASS--FPISKKSVDITSLATNGGRVQCMQVWPPTGKLKNETFSYLPDLTDEQLL 85
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KEIDY+++ GWIPCLEF+ E G+V+RE + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 86 KEIDYLIRNGWIPCLEFELEKGHVYREYHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEV 145
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+EC K YPN ++R + F+N +Q QC+SF+ KP
Sbjct: 146 RECLKEYPNCWVRIIGFDNVRQVQCISFIAAKP 178
>gi|168066778|ref|XP_001785309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663092|gb|EDQ49877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 182
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 105/150 (70%), Gaps = 6/150 (4%)
Query: 23 KALLPVKDSIAWSSK-----TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + ++SK +V N S+ +CM+ WNPI KFE SYLP LSDD+IAK++
Sbjct: 32 KAFSGLKSATLFTSKAQTLSSVQNRSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91
Query: 78 DYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
+YM+++ IPCLEFD V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+EC
Sbjct: 92 EYMIQQKLIPCLEFDVNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEEC 151
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KK +P ++R L F+N KQ Q FL+ +P
Sbjct: 152 KKTFPGCFVRVLGFDNVKQVQICGFLVARP 181
>gi|3063524|gb|AAC14064.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oryza sativa
Japonica Group]
Length = 175
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKA P+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKANPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|809069|emb|CAA42617.1| ribulose bisphosphate carboxylase [Phaseolus vulgaris]
Length = 135
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 102/132 (77%), Gaps = 1/132 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
+ +NG + +C++ W + KKFE LSYLP L+ +AKE+DY+L+KGW+PCLEF+ E
Sbjct: 1 TSVANNGGRVQCIQVWPTVGKKKFETLSYLPPLTKQQLAKEVDYLLRKGWVPCLEFELEH 60
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE++K PGYYDGRYWTMWKLPMFGC DSSQ+L E+ E + A+P+ +IR + F+N +
Sbjct: 61 GFVYREHNKSPGYYDGRYWTMWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVR 120
Query: 155 QGQCMSFLIQKP 166
Q QC+SF+ KP
Sbjct: 121 QVQCISFIAYKP 132
>gi|149392260|gb|ABR25969.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
Length = 157
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 107/146 (73%), Gaps = 1/146 (0%)
Query: 22 SKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYM 80
S A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + + K+I+Y+
Sbjct: 3 STAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYL 62
Query: 81 LKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY 140
L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAY
Sbjct: 63 LRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAY 122
Query: 141 PNAYIRCLAFNNQKQGQCMSFLIQKP 166
P+A++R + F+N +Q Q +SF+ KP
Sbjct: 123 PDAFVRIIGFDNVRQVQLISFIAYKP 148
>gi|13926229|gb|AAK49590.1|AF372874_1 F1O19.10/F1O19.10 [Arabidopsis thaliana]
Length = 125
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 74/125 (59%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+RE+ PG
Sbjct: 1 MQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 120
Query: 167 TTTTS 171
+ T
Sbjct: 121 PSFTG 125
>gi|225455934|ref|XP_002276967.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic isoform 1 [Vitis vinifera]
gi|147807983|emb|CAN64291.1| hypothetical protein VITISV_022329 [Vitis vinifera]
Length = 180
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV- 94
+ SNG + RCMK W KFE LSYLP L+D+ + KE+DY+L+ WIPCLEF ++
Sbjct: 48 TSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQLCKEVDYLLRMKWIPCLEFTKLY 107
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
Y HRE+++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QE + AYP+A+IR + F+N +
Sbjct: 108 PYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIKEVQEARTAYPDAHIRIIGFDNNR 167
Query: 155 QGQCMSFLIQKPT 167
Q QC++F+ KP+
Sbjct: 168 QVQCIAFIAYKPS 180
>gi|149938960|gb|ABR45725.1| RBCS1 [Actinidia deliciosa]
Length = 176
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 99/128 (77%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
S+G K +CM+ W P+ +KFE LSYLP L D++ K+IDY+++ GWIPC+EF G+V+
Sbjct: 44 SSGFKVKCMQVWPPLGKRKFETLSYLPPLPVDALLKQIDYLIRSGWIPCIEFTVGEGFVY 103
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLPM+GC DS+Q+L E++ KK YPN+YIR + F+N++Q QC
Sbjct: 104 REHHHSPGYYDGRYWTMWKLPMYGCTDSTQVLAEVEANKKEYPNSYIRIIGFDNKRQVQC 163
Query: 159 MSFLIQKP 166
+SF++ P
Sbjct: 164 VSFIVHTP 171
>gi|2407281|gb|AAB70543.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oryza sativa
Indica Group]
Length = 175
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
++ KKAYP+A++R + F+N +Q Q +S + KP
Sbjct: 134 EDAKKAYPDAFVRIIGFDNVRQVQLISLIANKP 166
>gi|4689388|gb|AAD27881.1|AF139469_1 ribulose-1,5-bisphosphate carboxylase small subunit [Vigna radiata]
Length = 181
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 112/168 (66%), Gaps = 10/168 (5%)
Query: 2 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEA 61
A+ AP G LG PT K + I + +NG + +CM+ W I KKFE
Sbjct: 18 GAAGMVAPFTGLKSLGGFPTRK----TNNDI---TSVANNGGRVQCMQVWPTIGKKKFET 70
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD---EVGYVHRENSKMPGYYDGRYWTMWKL 118
LSYLP L+++ + KE+DY+L+ GWIPCLEF+ + + HREN++ PGYYDGRYWTMWKL
Sbjct: 71 LSYLPDLTEEQLGKEVDYLLRSGWIPCLEFELSHKDAFPHRENNRSPGYYDGRYWTMWKL 130
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
PM+GC DSSQ+L E++E + YP+ ++R + F++ +Q QC+SF+ KP
Sbjct: 131 PMYGCTDSSQVLKELREARTLYPDGFVRIVGFDSVRQVQCISFIAYKP 178
>gi|3914608|sp|Q42915.1|RBS_MANES RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|168363|gb|AAA99429.1| ribulose 1,5-bisphosphate carboxylase [Manihot esculenta]
gi|6272549|gb|AAF06099.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
Length = 182
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG K +CMK W + KKFE LSYLP L+ + +A E++Y+L+ GWIPCLEF+ E G V+
Sbjct: 52 SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVY 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE++++PGYYDGRYWTMWKLPMFGC D++Q+L E+ E K +P+ Y R + F+N +Q QC
Sbjct: 112 REHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SFL KP
Sbjct: 172 ISFLAYKP 179
>gi|218210|dbj|BAA00539.1| small subunit of ribulose-1,5-bisphosphate carboxylase [Oryza
sativa Japonica Group]
Length = 175
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S VSNG + + M+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKFMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A+IR + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFIRIIGFDNVRQVQLISFIAYKP 166
>gi|12019640|gb|AAA33685.2| ribulose 1,5 bisphosphate carboxylase [Pisum sativum]
Length = 139
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+K W+PCLEF+ E G+V+
Sbjct: 9 SNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKPWVPCLEFELEKGFVY 68
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE++K PGYYDGRYWTMWKLPMFG D+SQ+L E+ E AYP A++R + F+N +Q QC
Sbjct: 69 REHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQC 128
Query: 159 MSFLIQKPTT 168
+SF+ P +
Sbjct: 129 ISFIAHTPES 138
>gi|585790|sp|Q08185.1|RBS5_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 5,
chloroplastic; Short=RuBisCO small subunit 5; Flags:
Precursor
gi|436489|gb|AAA03697.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial [Mesembryanthemum crystallinum]
Length = 182
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Query: 17 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKE 76
GLK S + PV + SNG + +CM W P+ KKFE LSYLP LS++S+ KE
Sbjct: 30 GLK--SISAFPVTRKNNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKE 86
Query: 77 IDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E
Sbjct: 87 VQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEE 146
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KKAYP A+IR + F+N +Q QC+SF+ KP +
Sbjct: 147 AKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 179
>gi|371942046|gb|AEX60835.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium herbaceum]
Length = 171
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQC 171
>gi|71041702|pdb|1UZD|C Chain C, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041704|pdb|1UZD|F Chain F, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041706|pdb|1UZD|I Chain I, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041707|pdb|1UZD|J Chain J, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041709|pdb|1UZD|M Chain M, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041711|pdb|1UZD|P Chain P, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041713|pdb|1UZD|T Chain T, Chlamydomonas,Spinach Chimeric Rubisco
gi|71041715|pdb|1UZD|W Chain W, Chlamydomonas,Spinach Chimeric Rubisco
Length = 134
Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-DEVGYVHRENSKMPG 106
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF + G+V+RE+ PG
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFATDHGFVYREHHNSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL+Q+P
Sbjct: 61 YYDGRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 120
Query: 167 TTT 169
T
Sbjct: 121 KTA 123
>gi|371942050|gb|AEX60837.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium herbaceum]
Length = 165
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 111/159 (69%), Gaps = 6/159 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLKSASAFPVARKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
KLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q
Sbjct: 127 KLPMFGCTDSAQVLEELEECKKAYPNAFIRIIGFDNVRQ 165
>gi|371942056|gb|AEX60840.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium herbaceum]
Length = 165
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 111/159 (69%), Gaps = 6/159 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLKSASAFPVTRKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
KLPMFGC DS+Q+L E++ECKKAYPNA+IR + F+N +Q
Sbjct: 127 KLPMFGCTDSAQVLEELEECKKAYPNAFIRIIGFDNVRQ 165
>gi|297734205|emb|CBI15452.3| unnamed protein product [Vitis vinifera]
Length = 157
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV- 94
+ SNG + RCMK W KFE LSYLP L+D+ + KE+DY+L+ WIPCLEF ++
Sbjct: 25 TSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQLCKEVDYLLRMKWIPCLEFTKLY 84
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
Y HRE+++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QE + AYP+A+IR + F+N +
Sbjct: 85 PYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIKEVQEARTAYPDAHIRIIGFDNNR 144
Query: 155 QGQCMSFLIQKPT 167
Q QC++F+ KP+
Sbjct: 145 QVQCIAFIAYKPS 157
>gi|4038719|dbj|BAA35176.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Triticum aestivum]
Length = 165
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A LPV + S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 12 FQGLK--STAGLPVGRRSSGSLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALL 69
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+L E++
Sbjct: 70 KQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLIEVE 129
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KK YP+AY+R + F+N +Q QC+SF+ +P
Sbjct: 130 EVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 161
>gi|18413570|emb|CAD21856.1| putative ribulose 1,5 biphosphate carboxylase small subunit
percursor [Rumex obtusifolius]
Length = 181
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 97/134 (72%), Gaps = 1/134 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG K RCM+ W P KFE LSYLP LS+ + +I+Y+L GW+PCLEFD G V+
Sbjct: 47 SNGGKVRCMQVWPPEGKIKFETLSYLPPLSEADLLAQINYLLINGWVPCLEFDVGPGAVY 106
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ PGYYDGRYWTMWKLPMFGC D++Q++ E++E KKAYP+A++R + F+N +Q QC
Sbjct: 107 REHHHSPGYYDGRYWTMWKLPMFGCTDATQVVAELEEAKKAYPHAFVRIIGFDNVRQVQC 166
Query: 159 MSFLIQKPTTTTST 172
+SF+ KP T
Sbjct: 167 VSFIAYKPPRAEGT 180
>gi|230922|pdb|3RUB|S Chain S, Crystal Structure Of The Unactivated Form Of
Ribulose-1,5-Bisphosphate Carboxylase(Slash)oxygenase
From Tobacco Refined At 2.0-Angstroms Resolution
gi|443238|pdb|1RLC|S Chain S, Crystal Structure Of The Unactivated Ribulose 1,
5-Bisphosphate Carboxylase(Slash)oxygenase Complexed
With A Transition State Analog, 2-Carboxy-D-Arabinitol
1,5-Bisphosphate
gi|515240|pdb|1RLD|S Chain S, Solid-State Phase Transition In The Crystal Structure Of
Ribulose 1,5- Biphosphate Carboxylase(Slash)oxygenase
gi|515242|pdb|1RLD|T Chain T, Solid-State Phase Transition In The Crystal Structure Of
Ribulose 1,5- Biphosphate Carboxylase(Slash)oxygenase
gi|7546556|pdb|1EJ7|S Chain S, Crystal Structure Of Unactivated Tobacco Rubisco With
Bound Phosphate Ions
Length = 123
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN+K PG
Sbjct: 1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 120
>gi|357146206|ref|XP_003573911.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase
small chain PW9, chloroplastic-like [Brachypodium
distachyon]
Length = 175
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 3/161 (1%)
Query: 7 TAPVAGSGYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYL 65
A A + + GLK T A LPV + S +VSNG + M+ W KKFE LSYL
Sbjct: 8 AAATAVAPFRGLKST--AGLPVSRRSAGAGLGSVSNGGRITSMQVWPIEGIKKFETLSYL 65
Query: 66 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCND 125
P L+ +S+ K+I+Y+++ W+PCLEF +VG+V RE+ PGY DGRYWTMWKLPMFGC D
Sbjct: 66 PPLTVESLLKQIEYLIRSKWVPCLEFSKVGFVFREHGNSPGYXDGRYWTMWKLPMFGCTD 125
Query: 126 SSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
++Q+L E++E KK YP AY+R + F+N +Q QC+SF+ KP
Sbjct: 126 ATQVLKELEEVKKEYPGAYVRIIGFDNTRQVQCISFIAFKP 166
>gi|371942048|gb|AEX60836.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium raimondii]
Length = 168
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 93/117 (79%), Gaps = 1/117 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q
Sbjct: 112 RKYSNLPTYYDGRYWTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQ 168
>gi|359490952|ref|XP_003634190.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic [Vitis vinifera]
Length = 187
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 73/140 (52%), Positives = 100/140 (71%), Gaps = 8/140 (5%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV- 94
+ SNG + RCMK W KFE LSYLP L+D+ + KE+DY+L+ WIPCLEF ++
Sbjct: 48 TSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQLCKEVDYLLRMKWIPCLEFTKLV 107
Query: 95 -------GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
Y HRE+++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QE + AYP+A+IR
Sbjct: 108 IFMNFSYPYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIKEVQEARTAYPDAHIRI 167
Query: 148 LAFNNQKQGQCMSFLIQKPT 167
+ F+N +Q QC++F+ KP+
Sbjct: 168 IGFDNNRQVQCIAFIAYKPS 187
>gi|333776968|dbj|BAK23963.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 170
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 109/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|371942052|gb|AEX60838.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gossypium raimondii]
Length = 165
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 110/159 (69%), Gaps = 6/159 (3%)
Query: 2 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNK 57
SA+I TA A + + GLK S + K + +S SNG + +CM+ W P K
Sbjct: 8 SATIATASPAQANMVAPFTGLKSASAFPVTRKANNDITS-LASNGGRVQCMQVWPPTGKK 66
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMW 116
KFE LSYLP L+ +AKE+DY+L+ W+PCLEF+ E G+VHR+ S +P YYDGRYWTMW
Sbjct: 67 KFETLSYLPDLTPVQLAKEVDYLLRSKWVPCLEFELEEGFVHRKYSNLPTYYDGRYWTMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
KLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q
Sbjct: 127 KLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQ 165
>gi|333776966|dbj|BAK23962.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 175
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 109/153 (71%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDATQVLKEL 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 134 EEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
>gi|231070|pdb|4RUB|S Chain S, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
gi|231072|pdb|4RUB|T Chain T, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
gi|576415|pdb|4RUB|U Chain U, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
gi|576417|pdb|4RUB|V Chain V, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
Length = 123
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN+K PG
Sbjct: 1 MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFGC D++Q+L E+ E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 120
>gi|50978423|emb|CAH10356.1| ribulose 1,5 bisphosphate carboxylase/oxygenase, small subunit
[Limonium gibertii]
Length = 154
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Query: 42 GSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHR 99
G K +CM+ W P KKFE LSYLP L + +A EI Y+++ GW+PCLEF EVG Y+HR
Sbjct: 27 GGKVQCMQVWPPEGLKKFETLSYLPPLDREGLANEISYLMRMGWVPCLEF-EVGEAYIHR 85
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
E +PGYYDGRYWTMWKLPM+GC D +Q+L E+ EC K YP+A+IR L F+N++Q QC+
Sbjct: 86 EYHNLPGYYDGRYWTMWKLPMYGCTDPAQVLKEVDECSKLYPHAHIRILGFDNKRQVQCI 145
Query: 160 SFLIQKPTT 168
SF+ KP +
Sbjct: 146 SFIAYKPPS 154
>gi|149938962|gb|ABR45726.1| RBCS1 [Actinidia chinensis]
Length = 176
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 101/132 (76%), Gaps = 1/132 (0%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EV 94
S + S+G K +CM+ W P+ KKFE LSYLP L ++++ K+IDY+++ GWIPC+EF
Sbjct: 40 SGSRSSGFKVKCMQVWPPLGKKKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGE 99
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE+ PGYYDGRYWTMWKLPM+GC DS+Q+ E++ KK YP+++IR + F+N++
Sbjct: 100 GFVYREHHHSPGYYDGRYWTMWKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKR 159
Query: 155 QGQCMSFLIQKP 166
Q QC+SF++ P
Sbjct: 160 QVQCVSFIVHTP 171
>gi|50978421|emb|CAH10355.1| ribulose 1,5 bisphosphate carboxylase/oxygenase, small subunit
[Limonium gibertii]
Length = 153
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 95/127 (74%), Gaps = 3/127 (2%)
Query: 42 GSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHR 99
G + RCM+ W P KKFE LSYLP L + +A EI Y+++ GW+PCLEF EVG Y+HR
Sbjct: 27 GGRVRCMQVWPPEGLKKFETLSYLPPLDREGLANEISYLMRMGWVPCLEF-EVGEAYIHR 85
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
E +PGYYDGRYWTMWKLPM+GC D +Q+L E+ EC + YP+A++R L F+N++Q QC+
Sbjct: 86 EYHNLPGYYDGRYWTMWKLPMYGCTDPAQVLKEVDECSQLYPHAHVRILGFDNKRQVQCI 145
Query: 160 SFLIQKP 166
SF+ KP
Sbjct: 146 SFIAYKP 152
>gi|266892|sp|P29684.1|RBS_HEVBR RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|168217|gb|AAA33361.1| ribulose-1,5-bisphosphate carboxylase small subunit [Hevea
brasiliensis]
Length = 183
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 106/153 (69%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + + SNG + +CM+ W P K +E LSYLP L+ + +A
Sbjct: 28 FTGLKSTS-AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLA 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+L+KGW+PCLEF+ E G V+RE + PGYYDGRYWTMWKLPMFGC D+ Q+L E+
Sbjct: 87 KEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQEL 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KAYP+ Y R + F+N +Q QC+SFL KP
Sbjct: 147 DEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKP 179
>gi|154000871|gb|ABS57004.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 129
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
MK W P+ KK+E LSYLP L++ +AKE+DY+L+K W+PCLEF+ E G+V+REN++ PG
Sbjct: 1 MKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YP A+IR + F+N +Q QC+ F+ +P
Sbjct: 61 YYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 120
>gi|223593|prf||0902172A carboxylase/oxygenase,RBP
Length = 123
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W PIN KK+E LSYLP LS + + E DY+LK GW+PCLEF+ E G+V+REN+K PG
Sbjct: 1 MQVWPPINKKKYETLSYLPDLSQEQLLLEPDYLLKDGWVPCLEFETEHGFVYRENNKSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFGC D++Q+L E+ E KKAYP A+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDATQVLAEVGEAKKAYPEAWIRIIGFDNVRQVQCISFIAYKP 120
>gi|132082|sp|P00868.1|RBS1_PEA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; AltName:
Full=PSSU1; Flags: Precursor
gi|169148|gb|AAA33684.1| ribulose-1,5-bisphosphate carboxylase small subunit precursor
[Pisum sativum]
Length = 136
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
Query: 35 SSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV 94
++ SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ +
Sbjct: 1 NTDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELL 60
Query: 95 -GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ 153
G+V+ E++K P YYDGRYWTMWKLPMFG D +Q++ E+ E AYP A++R + FNN
Sbjct: 61 KGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNV 120
Query: 154 KQGQCMSFLIQKPTT 168
+Q QC+SF+ P +
Sbjct: 121 RQVQCISFIAHTPES 135
>gi|3914587|sp|Q38793.1|RBS_AEGTA RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|599620|emb|CAA58150.1| rbcS gene [Aegilops tauschii]
Length = 175
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS + +
Sbjct: 16 FQGLK--STAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC +Q++ E+
Sbjct: 74 LKQVDYLIRSKWVPCLEFRKVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEV 133
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E +K YP+ Y R + F+N +Q Q +SF+ KP
Sbjct: 134 EEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKP 166
>gi|406366518|gb|AFS41756.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 182
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VH
Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVH 111
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
R+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC
Sbjct: 112 RKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELEECKKEYPNAFIRIIGFDNVRQVQC 171
Query: 159 MSFLIQKP 166
+SF+ KP
Sbjct: 172 ISFIAYKP 179
>gi|76574234|gb|ABA46898.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 161
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|30523254|gb|AAP31674.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Citrus limon]
Length = 119
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 69/119 (57%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Query: 42 GSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRE 100
G + +CMK W P KKFE LSYLP LSD+++ KEI+Y+L+ GWIPCLEF+ E G+V+RE
Sbjct: 1 GGRVKCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLLRSGWIPCLEFELEKGWVYRE 60
Query: 101 NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
+ + PGYYDGRYWTMWKLPMFGC D++Q+L E+ E +K YP++++R + F+N++Q QC+
Sbjct: 61 HHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCI 119
>gi|410563178|pdb|4HHH|S Chain S, Structure Of Pisum Sativum Rubisco
gi|410563179|pdb|4HHH|T Chain T, Structure Of Pisum Sativum Rubisco
gi|410563180|pdb|4HHH|U Chain U, Structure Of Pisum Sativum Rubisco
gi|410563181|pdb|4HHH|V Chain V, Structure Of Pisum Sativum Rubisco
Length = 123
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+RE++K PG
Sbjct: 1 MQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELKKGFVYREHNKSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFG D +Q+L E+ E KK YP A++R + FNN +Q QC+SF+ P
Sbjct: 61 YYDGRYWTMWKLPMFGTTDPAQVLKELDEVKKEYPRAFVRVIGFNNVRQVQCISFIAHTP 120
Query: 167 TT 168
+
Sbjct: 121 ES 122
>gi|3914607|sp|Q41373.1|RBS_SACHY RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|485507|pir||S33613 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor - sugarcane
gi|169842|gb|AAA33922.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Saccharum hybrid cultivar H32-8560]
Length = 168
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 107/161 (66%), Gaps = 5/161 (3%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
++ A + + GLK T A LPV S VSNG + RCM+ W NKKFE LSYLP
Sbjct: 8 SSATAAAPFQGLKST--ASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLP 65
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDS 126
L+ + + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+
Sbjct: 66 PLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDA 125
Query: 127 SQILNEIQECKKAYPNAYIRC-LAFNNQKQGQCMSFLIQKP 166
SQ+ E+QE +YP +R L F+N +Q Q ++F+ KP
Sbjct: 126 SQVYKELQEAIASYPE--LRAILGFDNIRQTQWLTFIAYKP 164
>gi|359490954|ref|XP_002276991.2| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic isoform 2 [Vitis vinifera]
Length = 173
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 96/132 (72%), Gaps = 6/132 (4%)
Query: 36 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG 95
+ SNG + RCMK W KFE LSYLP L+D+ + KE+DY+L+ WIPCLEF
Sbjct: 48 TSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQLCKEVDYLLRMKWIPCLEFT--- 104
Query: 96 YVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
+E+++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QE + AYP+A+IR + F+N +Q
Sbjct: 105 ---KEHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIKEVQEARTAYPDAHIRIIGFDNNRQ 161
Query: 156 GQCMSFLIQKPT 167
QC++F+ KP+
Sbjct: 162 VQCIAFIAYKPS 173
>gi|76574187|gb|ABA46875.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
gi|76574189|gb|ABA46876.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W KKFE LSYLP+L D+++
Sbjct: 25 FTGLKSTS-AFPITRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|76574256|gb|ABA46909.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 25 FTGLKSTS-AFRVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A++R + F+N
Sbjct: 144 ECKKEYPKAFVRIIGFDN 161
>gi|76574260|gb|ABA46911.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CM+ W KKFE LSYLP+L D+ +
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPSNGGRVQCMEVWPIEGKKKFETLSYLPTLVDEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|76574214|gb|ABA46888.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
gi|76574224|gb|ABA46893.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 161
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 96/138 (69%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S NG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|76574191|gb|ABA46877.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W K+FE LSYLP+L D+++
Sbjct: 25 FTGLKSTS-AFPITRKANADLSHLPSNGGRVQCMKVWPIEGKKRFETLSYLPTLVDEALV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|76574220|gb|ABA46891.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 157
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 96/138 (69%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S NG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 21 FTGLKSTS-AFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 79
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 80 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 139
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 140 ECKKEYPKAFIRIIGFDN 157
>gi|193230752|gb|ACF16408.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small
subunit [Myrmecia incisa]
Length = 189
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
Query: 23 KALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLK 82
KAL P + + ++ KTVSNG KTR M W P NN+ FE LS+LP L+DD IAK++DYM+
Sbjct: 26 KALAPAR-AATFAQKTVSNGIKTRQMMVWQPTNNRYFETLSFLPPLTDDQIAKQVDYMIN 84
Query: 83 KGWIPCLEFDE--VGYVHREN-----SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQE 135
GW+PCLEF E + YV +N + GY D RYWTM+KLPMFGC D Q+L EI
Sbjct: 85 NGWVPCLEFSEANMAYVASDNCIRYGNVASGYQDNRYWTMFKLPMFGCTDPGQVLTEIAN 144
Query: 136 CKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
+K +P+AYIR +AF+N Q Q FL+ +P +
Sbjct: 145 AEKCFPDAYIRLVAFDNVTQTQVAGFLVHRPAS 177
>gi|76574216|gb|ABA46889.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S SNG + +CMK W KKFE LSYLP+L ++ +
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYLPTLVNEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|76574201|gb|ABA46882.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S NG + +CMK W KKFE LSYLP+L D+++
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+N
Sbjct: 144 ECKKEYPKAFIRIIGFDN 161
>gi|315570432|gb|ADU33221.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dunaliella parva]
Length = 189
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 9/171 (5%)
Query: 7 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLP 66
TAPVA G +L P A K + M W P+NNK+FE SYLP
Sbjct: 8 TAPVATPISRGSTKVQASLRPAVTRPA--PKAQVPAVRANQMMVWQPVNNKQFETFSYLP 65
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMP-------GYYDGRYWTMWKLP 119
L+ D IAK++DY++ GWIPCLEF E Y + N+ YYD RYWTMWKLP
Sbjct: 66 PLTADQIAKQVDYIVGNGWIPCLEFSEESYAYVANTNTVRFGPVSNNYYDNRYWTMWKLP 125
Query: 120 MFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
MFGCND +Q+L EIQ+C +A+P AY R +AF+N++Q Q +SFL+Q+P +T
Sbjct: 126 MFGCNDPAQVLMEIQKCSRAFPEAYQRLVAFDNKRQVQVISFLVQRPKNST 176
>gi|224284271|gb|ACN39871.1| unknown [Picea sitchensis]
Length = 136
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 88/113 (77%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
INN KFE LSYLP L+ + + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW
Sbjct: 21 INNPKFETLSYLPRLTQEQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYW 80
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
MWKLPMFGC ++SQ+LNE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 81 VMWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 133
>gi|226532904|ref|NP_001146043.1| ribulose bisphosphate carboxylase small subunit2 [Zea mays]
gi|219885421|gb|ACL53085.1| unknown [Zea mays]
gi|414588566|tpg|DAA39137.1| TPA: ribulose bisphosphate carboxylase small subunit2 [Zea mays]
Length = 153
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 91/119 (76%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
M+ W NKKFE LSYLP LS D + K++DY+L+ GWIPCLEF ++G+V+RENS P Y
Sbjct: 31 MQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKLGFVYRENSTSPCY 90
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC D++Q+ E+QE AYP+A+ R + F+N +Q QC+SF+ KP
Sbjct: 91 YDGRYWTMWKLPMFGCTDATQVYKELQEAIAAYPDAFHRVIGFDNVRQTQCVSFIAYKP 149
>gi|19439|emb|CAA24969.1| unnamed protein product [Lemna gibba]
Length = 120
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 93/120 (77%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
M+ W P KKFE LSY P S + +AKE+DY+L+ W+PC+EF + G+V+REN+ PGY
Sbjct: 1 MQVWPPEGLKKFETLSYFPLSSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENNASPGY 60
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
YDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF+ KPT
Sbjct: 61 YDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 120
>gi|168997361|gb|ACA42439.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Hevea brasiliensis]
Length = 183
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 102/153 (66%), Gaps = 2/153 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + + SNG + +CM+ W P K FE YLP L+ + +A
Sbjct: 28 FTGLKSTS-AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFFETFLYLPPLTREQLA 86
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++Y+ KGW+PCLEF+ E G V+RE + PGYYDGRYWTMWKLPMFGC D+ Q+L E+
Sbjct: 87 KEVEYLFCKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQEL 146
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E KAYP+ Y R + F+N +Q QC+SFL KP
Sbjct: 147 DEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKP 179
>gi|76574258|gb|ABA46910.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 96/138 (69%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S NG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A++R + F+N
Sbjct: 144 ECKKEYPKAFVRIIGFDN 161
>gi|148907565|gb|ABR16912.1| unknown [Picea sitchensis]
Length = 188
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 36 AFTGLKSTAQFPSSMKTNNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 95
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ + KE++Y+LK W+PCLEFDE G + R+ PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 96 EQLLKEVEYLLKNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTEASQVL 155
Query: 131 NEIQECKKAYPN 142
NE+ EC KAYPN
Sbjct: 156 NEVNECAKAYPN 167
>gi|146454848|gb|ABQ42090.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Sonneratia apetala]
Length = 178
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 7/165 (4%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALS 63
TAP S + GLK S + P A + SNG + +CM+ W P KKFE LS
Sbjct: 11 TAPAQASMVAPFTGLK--SSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLS 68
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
YLP LS + + KEI+Y+++ GW PCLEF Y +REN + PGYYDGRYWTMWKLPMF
Sbjct: 69 YLPDLSREQLIKEIEYLIRNGWFPCLEFSCPAFAYPYRENHRSPGYYDGRYWTMWKLPMF 128
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GC D Q++ E+ E KAYP + R F+ ++Q QC+SF+ KP
Sbjct: 129 GCTDPIQVIKELDEGIKAYPTYFFRIAGFSARRQVQCISFIAYKP 173
>gi|383875287|pdb|3AXK|S Chain S, Structure Of Rice Rubisco In Complex With Nadp(H)
gi|383875289|pdb|3AXK|T Chain T, Structure Of Rice Rubisco In Complex With Nadp(H)
Length = 129
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 94/119 (78%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
M+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGY
Sbjct: 2 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGY 61
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q QC+SF+ KP
Sbjct: 62 YDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQCISFIAYKP 120
>gi|44890113|gb|AAS48504.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dunaliella tertiolecta]
Length = 188
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 113/176 (64%), Gaps = 15/176 (8%)
Query: 2 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEA 61
SAS+ APVA + ++K +K ++ K + + M W PINNK+FE
Sbjct: 8 SASV--APVAS------RTSTKVQASLKPAVRAVPKAQAPAVRANQMMVWQPINNKQFET 59
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHRENSKMPG-----YYDGRYWT 114
SYLP L+ D IA+++DY+++ GW PCLEF E G YV +++ G YYD RYWT
Sbjct: 60 FSYLPPLTADQIARQVDYIVENGWTPCLEFAEEGQAYVSSDSAVRFGAVSANYYDNRYWT 119
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
MWKLPMFGC D SQ+L+EI +C +A+PN+Y R +AF+N+KQ Q +SFL+Q+P T
Sbjct: 120 MWKLPMFGCTDPSQVLSEINKCSRAFPNSYQRLVAFDNKKQVQVISFLVQRPRNAT 175
>gi|12240092|gb|AAG49562.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
precursor [Citrus reticulata]
Length = 118
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 47 CMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMP 105
CM+ W P KKFE LSYLP LSD+++ KEI Y+L+ GWIPCLEF+ E G+V+RE+ P
Sbjct: 1 CMQVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSP 60
Query: 106 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
GYYDGRYWTMWKLPM+GC D++Q+L E+ E +K YP++++R + F+N++Q QC+SF+
Sbjct: 61 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 117
>gi|76574222|gb|ABA46892.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 161
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK TS A + + A S NG + +CMK W KKFE LSYLP+L D+ +
Sbjct: 25 FTGLKSTS-AFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLV 83
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++
Sbjct: 84 KQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVE 143
Query: 135 ECKKAYPNAYIRCLAFNN 152
ECKK YP A+IR + F+
Sbjct: 144 ECKKEYPKAFIRIIGFDK 161
>gi|326487358|dbj|BAJ89663.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 135
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 94/119 (78%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
++ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGY
Sbjct: 8 LQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGY 67
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 68 YDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 126
>gi|146454996|gb|ABQ42164.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Sonneratia ovata]
Length = 178
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 102/165 (61%), Gaps = 7/165 (4%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALS 63
TAP S + GLK S + P A + SNG + +CM+ W P KKFE LS
Sbjct: 11 TAPAQASMAAPFTGLK--SSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLS 68
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
YLP L+ + + KEI+Y+++ GW PCLEF Y +REN + PGYYDGRYWTMWKLPMF
Sbjct: 69 YLPDLTREQLIKEIEYLIRNGWFPCLEFSCPAFAYPYRENHRSPGYYDGRYWTMWKLPMF 128
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GC D Q++ E+ E KAYP + R F+ ++Q QC+SF+ KP
Sbjct: 129 GCTDPIQVIKELDEGIKAYPTYFFRIAGFSARRQVQCISFIAYKP 173
>gi|1311404|pdb|1AUS|S Chain S, Activated Unliganded Spinach Rubisco
gi|1827839|pdb|8RUC|I Chain I, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
gi|1827840|pdb|8RUC|J Chain J, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
gi|1827841|pdb|8RUC|K Chain K, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
gi|1827842|pdb|8RUC|L Chain L, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
gi|1941999|pdb|1RBO|S Chain S, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
gi|1942001|pdb|1RBO|C Chain C, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
gi|1942003|pdb|1RBO|F Chain F, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
gi|1942005|pdb|1RBO|I Chain I, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
gi|1942008|pdb|1RCO|S Chain S, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|1942010|pdb|1RCO|C Chain C, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|1942012|pdb|1RCO|F Chain F, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|1942014|pdb|1RCO|I Chain I, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|1942016|pdb|1RCO|M Chain M, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|1942018|pdb|1RCO|P Chain P, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|2392030|pdb|1AA1|S Chain S, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
gi|2392032|pdb|1AA1|C Chain C, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
gi|2392034|pdb|1AA1|F Chain F, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
gi|2392036|pdb|1AA1|I Chain I, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
gi|2392521|pdb|1RCX|S Chain S, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392523|pdb|1RCX|C Chain C, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392525|pdb|1RCX|F Chain F, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392527|pdb|1RCX|I Chain I, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392529|pdb|1RCX|M Chain M, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392531|pdb|1RCX|P Chain P, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392533|pdb|1RCX|T Chain T, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392535|pdb|1RCX|W Chain W, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
gi|2392539|pdb|1RXO|S Chain S, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
gi|2392541|pdb|1RXO|C Chain C, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
gi|2392543|pdb|1RXO|F Chain F, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
gi|2392545|pdb|1RXO|I Chain I, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
gi|3184489|pdb|1RCO|T Chain T, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|3184491|pdb|1RCO|W Chain W, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
gi|38493081|pdb|1UPM|C Chain C, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493083|pdb|1UPM|F Chain F, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493085|pdb|1UPM|I Chain I, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493088|pdb|1UPM|M Chain M, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493090|pdb|1UPM|P Chain P, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493092|pdb|1UPM|S Chain S, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493093|pdb|1UPM|T Chain T, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493095|pdb|1UPM|W Chain W, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
gi|38493100|pdb|1UPP|I Chain I, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
gi|38493101|pdb|1UPP|J Chain J, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
gi|38493102|pdb|1UPP|K Chain K, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
gi|38493103|pdb|1UPP|L Chain L, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
gi|157838192|pdb|1AUS|T Chain T, Activated Unliganded Spinach Rubisco
gi|157838194|pdb|1AUS|U Chain U, Activated Unliganded Spinach Rubisco
gi|157838196|pdb|1AUS|V Chain V, Activated Unliganded Spinach Rubisco
Length = 123
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W +N KK+E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+RE+ PG
Sbjct: 1 MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFGC D +Q+LNE++ECKK YPNA+IR + F++ ++ QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKP 120
Query: 167 T 167
Sbjct: 121 A 121
>gi|76574193|gb|ABA46878.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 106/157 (67%), Gaps = 8/157 (5%)
Query: 2 SASIFT--APVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPIN 55
SA+ FT +P S + GLK S + PV + A S SNG + +CMK W
Sbjct: 7 SAATFTRVSPAQSSMVAPFTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEG 64
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTM
Sbjct: 65 LKKFETLSYLPTLKDEALLKQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDGRYWTM 124
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
WKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 125 WKLPMFGCTDAVQVVKELEECKKEYPKAFIRIIGFDN 161
>gi|1204056|emb|CAA63441.1| Rubisco [Betula pendula]
Length = 110
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 93/110 (84%), Gaps = 1/110 (0%)
Query: 45 TRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSK 103
+CM+ W P+ KKFE LSYLP LS + +AKE+DY+L+K IPCLEF+ E G+V+RE+++
Sbjct: 1 VQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNR 60
Query: 104 MPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ 153
PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKKAYP+A+IR + F+++
Sbjct: 61 SPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDDK 110
>gi|53793876|gb|AAU93597.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dunaliella salina]
Length = 190
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 96/143 (67%), Gaps = 7/143 (4%)
Query: 35 SSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV 94
+ K + +T M W P+NNK+FE SYLP L+ D IA+++DY++ GWIPCLEF E
Sbjct: 35 APKAQAPAVRTNQMMVWRPVNNKQFETFSYLPPLTADQIARQVDYIVGNGWIPCLEFSEE 94
Query: 95 GYVHRENSKMP-------GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
Y + N+ YYD RYWTMWKLPMFGC D +Q+L EIQ+C +A+P AY R
Sbjct: 95 SYAYVANTNTARFGPVSNNYYDNRYWTMWKLPMFGCTDPAQVLMEIQKCSRAFPEAYQRL 154
Query: 148 LAFNNQKQGQCMSFLIQKPTTTT 170
+AF+N+KQ Q +SFL+Q+P +T
Sbjct: 155 VAFDNKKQVQVISFLVQRPKNST 177
>gi|76574218|gb|ABA46890.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 116
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 4 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALVKQIEYLLRSKWIPCLEFSHEGFVGR 63
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 64 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVEECKKEYPKAFIRIIGFDN 116
>gi|255760387|gb|ACU32662.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Chlorella pyrenoidosa]
Length = 184
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 108/179 (60%), Gaps = 18/179 (10%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGS--KTRCMKTWNPINNKK 58
+SAS+ APVA + LKP K V TVSNG+ KT M W P+NNK
Sbjct: 5 ISASLVKAPVATTQRSVLKPAGKTFKAV---------TVSNGNVQKTSAMMVWTPVNNKF 55
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVH-----RENSKMPGYYDGR 111
FE SYLP LS D IA+++DY++ GW PCLEF + YV R + GY D R
Sbjct: 56 FETFSYLPPLSGDQIARQVDYIVLNGWTPCLEFADPDCAYVSNDSCVRFGNVSVGYQDNR 115
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
YWTMWKLPMFGC D SQ+L EI C++A+P+AYIR +AF+ +Q Q FL+ +P + T
Sbjct: 116 YWTMWKLPMFGCTDPSQVLKEISNCERAFPDAYIRLVAFDAIRQVQITGFLVHRPMSAT 174
>gi|327323115|gb|AEA48975.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Rosa
roxburghii]
Length = 179
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 99/130 (76%), Gaps = 7/130 (5%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W + KKFE LSYLP LS +S+AKE+DY+L+KGW+PCLEF+ E G+V+
Sbjct: 51 SNGGRVQCMKVWPTVGMKKFETLSYLPPLSPESLAKEVDYLLRKGWVPCLEFELEHGFVY 110
Query: 99 --RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
R+ + PG RYWTMWKLPMFGC DS+Q+L E++E KKA+P+ +IR + F+N +Q
Sbjct: 111 LGRDLERPPG----RYWTMWKLPMFGCTDSAQVLKELEEAKKAHPDGFIRIIGFDNVRQV 166
Query: 157 QCMSFLIQKP 166
QC+SF+ KP
Sbjct: 167 QCISFIAYKP 176
>gi|76574203|gb|ABA46883.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 97/139 (69%), Gaps = 3/139 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S + PV + A S SNG + +CMK W KK E LSYLP+L D+++
Sbjct: 25 FTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGLKKLETLSYLPTLKDEAL 82
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q++ E+
Sbjct: 83 LKQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEV 142
Query: 134 QECKKAYPNAYIRCLAFNN 152
+ECKK YP A+IR + F+N
Sbjct: 143 EECKKEYPKAFIRIIGFDN 161
>gi|159488841|ref|XP_001702409.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1,
chloroplast precursor [Chlamydomonas reinhardtii]
gi|132076|sp|P00873.1|RBS1_CHLRE RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|158271077|gb|EDO96904.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1,
chloroplast precursor [Chlamydomonas reinhardtii]
Length = 185
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRF 105
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M
Sbjct: 106 GSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMG 165
Query: 161 FLIQKPTTT 169
FL+Q+P T
Sbjct: 166 FLVQRPKTA 174
>gi|76574272|gb|ABA46917.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVGR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVEECKKEYPKAFIRIIGFDN 115
>gi|118489576|gb|ABK96590.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 189
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 100/133 (75%), Gaps = 3/133 (2%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CM+ W P KKFE LSYLP L+ + +A+EI+Y+L+ W+PCLEF+ E G+V+
Sbjct: 51 SNGGRVQCMQVWPPTGLKKFETLSYLPDLTTEQLAREIEYLLRNKWVPCLEFELEKGWVY 110
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE+ + PGYYDGRYWTMWKLPMFGC ++SQ+L E++E KKAYPN+++R + F + + +C
Sbjct: 111 REHHQSPGYYDGRYWTMWKLPMFGCTEASQVLIELEEAKKAYPNSFVRIIGF--ETRVKC 168
Query: 159 MSFLIQKPTTTTS 171
+ ++ P+ S
Sbjct: 169 SASVLSPPSRRVS 181
>gi|146454846|gb|ABQ42089.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Sonneratia alba]
Length = 178
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 102/165 (61%), Gaps = 7/165 (4%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALS 63
TAP S + GLK S + P A + SNG + +CM+ W P KKFE LS
Sbjct: 11 TAPAQASMVAPFTGLK--SSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLS 68
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
YLP L+ + + KEI+Y+++ GW PCLEF Y +REN + PGYYDGRYWTMWKLPM+
Sbjct: 69 YLPDLTREQLIKEIEYLIRNGWFPCLEFSCPAFAYPYRENHRSPGYYDGRYWTMWKLPMY 128
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GC D Q++ E+ E KAYP + R F+ ++Q QC+SF+ KP
Sbjct: 129 GCTDPIQVIKELDEGIKAYPTYFFRIAGFSARRQVQCISFIAYKP 173
>gi|241865230|gb|ACS68693.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sonneratia alba]
gi|241865463|gb|ACS68764.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sonneratia alba]
Length = 173
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 102/165 (61%), Gaps = 7/165 (4%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALS 63
TAP S + GLK S + P A + SNG + +CM+ W P KKFE LS
Sbjct: 10 TAPAQASMVAPFTGLK--SSSAFPTTRKTADITSLASNGGRVQCMQVWPPEGLKKFETLS 67
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
YLP L+ + + KEI+Y+++ GW PCLEF Y +REN + PGYYDGRYWTMWKLPM+
Sbjct: 68 YLPDLTREQLIKEIEYLIRNGWFPCLEFSCPAFAYPYRENHRSPGYYDGRYWTMWKLPMY 127
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GC D Q++ E+ E KAYP + R F+ ++Q QC+SF+ KP
Sbjct: 128 GCTDPIQVIKELDEGIKAYPTYFFRIAGFSARRQVQCISFIAYKP 172
>gi|426206140|dbj|BAM68686.1| ribulose 1,5-bisphosphate carboxlase/oxygenase small subunit
[Botryococcus braunii]
gi|426206142|dbj|BAM68687.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Botryococcus braunii]
Length = 190
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 95/142 (66%), Gaps = 7/142 (4%)
Query: 34 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE 93
W+ KTVSNG KT M W P NNK FE SYLP LSD IAK+++Y++ G+I CLEF E
Sbjct: 37 WAKKTVSNGIKTSAMMVWTPTNNKFFETFSYLPPLSDAEIAKQVEYIVNNGYIACLEFAE 96
Query: 94 --VGYVH-----RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIR 146
+ YV R N+ P YYD RYWTMWKLPMFGC D Q+L EI C KA+P+A+IR
Sbjct: 97 SDLAYVGDKSMIRMNNVAPCYYDNRYWTMWKLPMFGCTDPDQVLREIMLCTKAFPDAFIR 156
Query: 147 CLAFNNQKQGQCMSFLIQKPTT 168
+AF+N++Q Q L+ +P T
Sbjct: 157 LVAFDNKRQVQIGGMLVHRPPT 178
>gi|20150190|pdb|1IR1|S Chain S, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
gi|20150192|pdb|1IR1|T Chain T, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
gi|20150194|pdb|1IR1|U Chain U, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
gi|20150196|pdb|1IR1|V Chain V, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
Length = 123
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 93/119 (78%), Gaps = 1/119 (0%)
Query: 49 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGY 107
K W N K++E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+RE+ PGY
Sbjct: 2 KVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGY 61
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC D +Q+LNE++ECKK YPNA+IR + F++ +Q QC+SF+ KP
Sbjct: 62 YDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP 120
>gi|76574230|gb|ABA46896.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 115
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVGR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVEECKKEYPKAFIRIIGFDN 115
>gi|76574276|gb|ABA46919.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
gi|76574278|gb|ABA46920.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
gi|76574284|gb|ABA46923.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALVKQIEYLLRSRWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPKAFIRIIGFDN 115
>gi|383875291|pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6pg
gi|383875293|pdb|3AXM|T Chain T, Structure Of Rice Rubisco In Complex With 6pg
gi|383875295|pdb|3AXM|U Chain U, Structure Of Rice Rubisco In Complex With 6pg
gi|383875297|pdb|3AXM|V Chain V, Structure Of Rice Rubisco In Complex With 6pg
gi|383875299|pdb|3AXM|W Chain W, Structure Of Rice Rubisco In Complex With 6pg
gi|383875301|pdb|3AXM|X Chain X, Structure Of Rice Rubisco In Complex With 6pg
gi|383875303|pdb|3AXM|Y Chain Y, Structure Of Rice Rubisco In Complex With 6pg
gi|383875305|pdb|3AXM|Z Chain Z, Structure Of Rice Rubisco In Complex With 6pg
Length = 129
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 93/119 (78%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
M+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGY
Sbjct: 2 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGY 61
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 62 YDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 120
>gi|671740|emb|CAA59218.1| ribulose-bisphosphate carboxylase [synthetic construct]
gi|77554374|gb|ABA97170.1| Ribulose bisphosphate carboxylase small chain A, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 128
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 93/119 (78%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
M+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGY
Sbjct: 1 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGY 60
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 61 YDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 119
>gi|51849612|dbj|BAD42334.1| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit
[Nannochloris bacillaris]
Length = 182
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 39 VSNGS--KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EV 94
VSNG+ KT M W PINNK FE S+LP LSD I K++DY+++ GW PCLEF E
Sbjct: 32 VSNGTVKKTTAMLVWTPINNKFFETFSFLPPLSDSEITKQVDYIVRNGWTPCLEFSDPEG 91
Query: 95 GYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLA 149
Y+ N+ GY D RYW+MWKLPMFGC D SQ+L EI C KA+P AYIR +A
Sbjct: 92 AYIGDTNTVRLQGTSAGYQDNRYWSMWKLPMFGCTDGSQVLKEIAGCTKAFPGAYIRLVA 151
Query: 150 FNNQKQGQCMSFLIQKP 166
F+NQKQ QC FL+ +P
Sbjct: 152 FDNQKQVQCTGFLVHRP 168
>gi|51849610|dbj|BAD42333.1| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit
[Nannochloris bacillaris]
Length = 182
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 101/164 (61%), Gaps = 13/164 (7%)
Query: 16 LGLKPTSKALLPVKDSIAWSSKT----VSNGS--KTRCMKTWNPINNKKFEALSYLPSLS 69
+ + + + P+ A S+K VSNG+ KT M W PINNK FE S+LP LS
Sbjct: 5 IAISTAAVRIAPITKVNAASTKARTAFVSNGTVKKTTAMLVWTPINNKFFETFSFLPPLS 64
Query: 70 DDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS-----KMPGYYDGRYWTMWKLPMFG 122
D I K++DY+++ GW PCLEF E Y+ N+ GY D RYW+MWKLPMFG
Sbjct: 65 DSEITKQVDYIVRNGWTPCLEFSDPEGAYIGDTNTVRLQGTSAGYQDNRYWSMWKLPMFG 124
Query: 123 CNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
C D SQ+L EI C KA+P AYIR +AF+NQKQ QC FL+ +P
Sbjct: 125 CTDGSQVLKEIAGCTKAFPGAYIRLVAFDNQKQVQCTGFLVHRP 168
>gi|384250555|gb|EIE24034.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small
subunit [Coccomyxa subellipsoidea C-169]
Length = 195
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 115/185 (62%), Gaps = 18/185 (9%)
Query: 1 MSASIFTAPVA------GSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPI 54
++AS+ + PVA +G+ GL ++ LP K ++ +TVSNG +TR M W P+
Sbjct: 4 LTASLVSCPVAVAAKPSKAGFSGL---ARVALPAKAVPTFAQRTVSNGCRTRQMLVWEPV 60
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHR-ENSKMPG----- 106
+NK FE SYLP L+DD IAK++DY++++GW P LEF E YV N + G
Sbjct: 61 DNKFFETFSYLPPLTDDQIAKQVDYIIRQGWTPALEFSNAESAYVKDVANIRFTGGSASC 120
Query: 107 -YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
YYD RYW M+KLPMFGC D+SQ+L EI K +P++Y+R AF+ +Q Q ++ L+ +
Sbjct: 121 NYYDNRYWAMYKLPMFGCTDASQVLAEIANAVKTFPDSYVRMAAFDAVRQVQTVAILVHR 180
Query: 166 PTTTT 170
P + T
Sbjct: 181 PASAT 185
>gi|302848291|ref|XP_002955678.1| hypothetical protein VOLCADRAFT_96573 [Volvox carteri f.
nagariensis]
gi|28797560|gb|AAO46872.1| ribulose-bisphosphate carboxylase small subunit Vc2 [Volvox
carteri]
gi|300259087|gb|EFJ43318.1| hypothetical protein VOLCADRAFT_96573 [Volvox carteri f.
nagariensis]
Length = 185
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 108/171 (63%), Gaps = 14/171 (8%)
Query: 3 ASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEAL 62
+S+ TA VA G++P + +K S+ + V+ ++ M W P+NNK FE
Sbjct: 8 SSVATA-VARPARSGVRPVAV----LKPSV--RATPVATPTQANKMMVWTPVNNKMFETF 60
Query: 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG-----YYDGRYWTM 115
SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYWTM
Sbjct: 61 SYLPPLSDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRFGPVSCLYYDNRYWTM 120
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLPMFGC D Q+L EI C KA+P+AY+R +AF+N KQ Q M FL+Q+P
Sbjct: 121 WKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMGFLVQRP 171
>gi|76574266|gb|ABA46914.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGXKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVGR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVEECKKEYPKAFIRIIGFDN 115
>gi|76574184|gb|ABA46874.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 115
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPKAFIRIIGFDN 115
>gi|76574268|gb|ABA46915.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGDRVQCMKVWPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVGR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPKAFIRIIGFDN 115
>gi|20341|emb|CAA30393.1| ribulose bisphosphate carboxylase [Oryza sativa]
Length = 172
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 95/131 (72%)
Query: 41 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRE 100
+G + RCM+ W KKFE LSYLP L+ + + K+I+Y+ +PCLEF +VG+V+RE
Sbjct: 39 HGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLAPFQVVPCLEFSKVGFVYRE 98
Query: 101 NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
N K PGYYDGRYWTMWKLPMFGC D++Q++ E++E KKAYP+A++R + F+N +Q Q +S
Sbjct: 99 NHKSPGYYDGRYWTMWKLPMFGCTDATQVVKELEEAKKAYPDAFVRIIGFDNVRQVQLIS 158
Query: 161 FLIQKPTTTTS 171
F+ P S
Sbjct: 159 FIAYNPGCEES 169
>gi|76574246|gb|ABA46904.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 115
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVEECKKEYPKAFVRIIGFDN 115
>gi|76574177|gb|ABA46871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
gi|76574199|gb|ABA46881.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
gi|76574270|gb|ABA46916.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
gi|76574274|gb|ABA46918.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
gi|76574282|gb|ABA46922.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 87/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVRIIGFDN 115
>gi|302848293|ref|XP_002955679.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Volvox carteri f. nagariensis]
gi|28797559|gb|AAO46871.1| ribulose-bisphosphate carboxylase small subunit Vc1 [Volvox
carteri]
gi|300259088|gb|EFJ43319.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Volvox carteri f. nagariensis]
Length = 185
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 110/176 (62%), Gaps = 9/176 (5%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
M+A + + VA + + + + + +K +I + V++ ++ M W P+NNK FE
Sbjct: 1 MAAIVAKSSVATAVVRPARSSVRPVAVLKPAI--KAAPVASPAQANKMMVWTPVNNKMFE 58
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG-----YYDGRYW 113
SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYW
Sbjct: 59 TFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRFGPVSCLYYDNRYW 118
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
TMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+N KQ Q M FL+Q+P +
Sbjct: 119 TMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMGFLVQRPKSA 174
>gi|132092|sp|P08475.1|RBS2_CHLRE RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|295799|emb|CAA28160.1| ribulose bisphosphate carboxylase [Chlamydomonas reinhardtii]
Length = 185
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRF 105
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M
Sbjct: 106 GSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMG 165
Query: 161 FLIQKPTTT 169
FL+Q+P +
Sbjct: 166 FLVQRPKSA 174
>gi|76574252|gb|ABA46907.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 115
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKEVEECKKEYPKAFVRIIGFDN 115
>gi|159492355|gb|ABW97364.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit 2 [Lotharella amoeboformis]
Length = 188
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 97/154 (62%), Gaps = 7/154 (4%)
Query: 21 TSKALLPVKDSIAWSSKTVSNGSKTR-------CMKTWNPINNKKFEALSYLPSLSDDSI 73
+S PV S+TV+ R C + +P NN ++E +SY+P ++
Sbjct: 28 SSNVAAPVAGRTMAFSRTVTPAPTFRSAIANAYCEEVVDPTNNVRYETMSYMPDFNERDQ 87
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
+IDYM++ G IPC+EFD G RENS+MP YYDGRYWTMWKLPMFG D+ Q++ E+
Sbjct: 88 EAQIDYMIRNGLIPCVEFDSQGTTFRENSRMPNYYDGRYWTMWKLPMFGATDARQVMQEV 147
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+EC++ P AYIR L F+N KQ QCM FL+ KP+
Sbjct: 148 RECQRNNPKAYIRILGFDNIKQVQCMGFLVAKPS 181
>gi|76574195|gb|ABA46879.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 106/157 (67%), Gaps = 8/157 (5%)
Query: 2 SASIFT--APVAGS---GYLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPIN 55
SA+ FT +P S + GLK S + PV + A S SNG + +CMK W
Sbjct: 7 SAATFTRVSPAQSSMVAPFTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEG 64
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTM
Sbjct: 65 LKKFETLSYLPTLKDEALLKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTM 124
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
WKLPMFGC D+ Q+ E++ECKK YP+A+IR + F+N
Sbjct: 125 WKLPMFGCTDAVQVAKELEECKKEYPDAFIRIIGFDN 161
>gi|76574206|gb|ABA46884.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 115
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPRAFVRIIGFDN 115
>gi|6440788|dbj|BAA78582.1| ribulose-bisphosphate carboxylase small chain precursor
[Chlamydomonas sp. HS-5]
Length = 158
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 9/148 (6%)
Query: 28 VKDSIAWSSKTVSNGSKTRC--MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGW 85
+K S+A +++ + + R K W P+NNK++E SYLP+L+ + IA+++DY+++ G+
Sbjct: 3 LKSSMASATRKATPVAAPRASAFKVWQPVNNKQYETFSYLPALTSEQIARQVDYVIRNGY 62
Query: 86 IPCLEFDEVGY--VHRENS-KMPG----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 138
PCLEF + Y V EN+ + G YYD RYWTMWKLPMFGC D++Q+L E+ C +
Sbjct: 63 TPCLEFADAAYSFVSNENTVRFSGVSANYYDNRYWTMWKLPMFGCTDAAQVLKEVALCTR 122
Query: 139 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
A+PNAY+R +AF+N KQ QCM FL+Q+P
Sbjct: 123 AFPNAYVRLVAFDNTKQVQCMGFLVQRP 150
>gi|228864|prf||1813208A RuBisCO:SUBUNIT=small
Length = 278
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 194
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 195 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 254
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 255 FVVQRP 260
>gi|76574208|gb|ABA46885.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
gi|76574226|gb|ABA46894.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|76574242|gb|ABA46902.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|76574248|gb|ABA46905.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
gi|76574250|gb|ABA46906.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 115
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVRIIGFDN 115
>gi|76574264|gb|ABA46913.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLLKQIEYLLRSKWIPCLEFSREGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVRIIGFDN 115
>gi|76574212|gb|ABA46887.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 98/139 (70%), Gaps = 3/139 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S + PV + A S SNG + +CMK W +KFE LSYLP++ D+++
Sbjct: 25 FTGLK--SASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVRKFETLSYLPTMKDEAL 82
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ WIPCLEF G+V REN + PGYYDGRYWTMWKLPMFGC D+ Q+ E+
Sbjct: 83 LKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEV 142
Query: 134 QECKKAYPNAYIRCLAFNN 152
+ECKK YP+A+IR + F+N
Sbjct: 143 EECKKEYPHAFIRIIGFDN 161
>gi|5777796|emb|CAA47180.2| ribulose 1-5 bisphosphate carboxylase/oxygenase [Euglena gracilis]
Length = 271
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 194
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 195 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 254
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 255 FVVQRP 260
>gi|83375904|gb|ABC17790.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375906|gb|ABC17791.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375908|gb|ABC17792.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375910|gb|ABC17793.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375912|gb|ABC17794.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375914|gb|ABC17795.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375916|gb|ABC17796.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375918|gb|ABC17797.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375920|gb|ABC17798.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375922|gb|ABC17799.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375924|gb|ABC17800.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|83375926|gb|ABC17801.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
Length = 117
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
P KK+E LSYLP L+D+ + KEIDY+++ GW+PCLEF+ E G+V+RE + PGYYDGR
Sbjct: 1 PRGLKKYETLSYLPDLTDEQLLKEIDYLIRSGWVPCLEFELEKGFVYREYHRSPGYYDGR 60
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YWTMWKLPM+GC D++Q+LNE+ EC K YPN ++R + F+N +Q QC+SF+ KP
Sbjct: 61 YWTMWKLPMYGCTDATQVLNEVGECLKEYPNCWVRIIGFDNVRQVQCISFIAAKP 115
>gi|18033077|gb|AAL56980.1| ribulose 1,5-bisphosphate carboxylase small subunit [Larrea
tridentata]
Length = 107
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 47 CMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMP 105
CMK W P KK E LSYLP LS +S+AKEI+Y ++KGWIPCLEF E G+V+RE S+MP
Sbjct: 1 CMKVWPPRGKKKLETLSYLPPLSIESLAKEIEYFIRKGWIPCLEFSIESGFVYRETSRMP 60
Query: 106 GYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIR 146
GYYDGRYWTMWKLPMFGC D+ Q+LNE++E KKAYP+A+IR
Sbjct: 61 GYYDGRYWTMWKLPMFGCTDAVQVLNELEEAKKAYPDAFIR 101
>gi|76574197|gb|ABA46880.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 115
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALVKQIEYPLRSRWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPKAFIRIIGFDN 115
>gi|44890111|gb|AAS48503.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dunaliella tertiolecta]
Length = 189
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 92/130 (70%), Gaps = 7/130 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M WNPINNK+FE SYLP L+ D IAK++DY++ GW PCLEF E YV +++
Sbjct: 47 MMVWNPINNKQFETFSYLPPLTADQIAKQVDYIVNNGWTPCLEFAEQNQAYVSSDSAVRF 106
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D SQ+L+EI +C +A+P +Y R +AF+N+KQ Q +S
Sbjct: 107 GAVSANYYDNRYWTMWKLPMFGCTDPSQVLSEINKCSRAFPESYQRLVAFDNKKQVQVIS 166
Query: 161 FLIQKPTTTT 170
FL+Q+P T
Sbjct: 167 FLVQRPRNAT 176
>gi|56966763|pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
gi|56966765|pdb|1WDD|W Chain W, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
Length = 128
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 92/118 (77%)
Query: 49 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYY 108
+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGYY
Sbjct: 2 QVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYY 61
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
DGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 62 DGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 119
>gi|76574181|gb|ABA46873.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 115
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A IR + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPKASIRIIGFDN 115
>gi|762923|emb|CAA28159.1| ribulose bisphosphate carboxylase [Chlamydomonas reinhardtii]
Length = 140
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRF 60
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M
Sbjct: 61 GSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMG 120
Query: 161 FLIQKPTTT 169
FL+Q+P T
Sbjct: 121 FLVQRPKTA 129
>gi|302848295|ref|XP_002955680.1| hypothetical protein VOLCADRAFT_76826 [Volvox carteri f.
nagariensis]
gi|300259089|gb|EFJ43320.1| hypothetical protein VOLCADRAFT_76826 [Volvox carteri f.
nagariensis]
Length = 186
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 7/138 (5%)
Query: 39 VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GY 96
V+ ++ M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E Y
Sbjct: 38 VTAPAQANKMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAY 97
Query: 97 VHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN 151
V E++ G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+
Sbjct: 98 VSNESTVRFGPVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFD 157
Query: 152 NQKQGQCMSFLIQKPTTT 169
N KQ Q M FL+Q+P +
Sbjct: 158 NVKQVQIMGFLVQRPKSA 175
>gi|164698715|gb|ABY66910.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit, partial [Miscanthus x giganteus]
Length = 121
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 89/117 (76%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYD 109
W NKKFE LSYLP L+++ + K++DY+L+ W+PCLEF + G+V+RENS P YYD
Sbjct: 1 VWPAYGNKKFETLSYLPPLTEEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYD 60
Query: 110 GRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
GRYWTMWKLPMFGC D+SQ+ E+QE +YP+AY+R L F+N +Q QC+SF+ KP
Sbjct: 61 GRYWTMWKLPMFGCTDASQVYKELQEAIASYPDAYVRILGFDNIRQTQCVSFIGYKP 117
>gi|132143|sp|P16881.1|RBS_EUGGR RecName: Full=Ribulose bisphosphate carboxylase small chains,
chloroplastic; Short=RuBisCO small subunits; Contains:
RecName: Full=Ribulose bisphosphate carboxylase small
chain P1, chloroplastic; Contains: RecName:
Full=Ribulose bisphosphate carboxylase small chain P2,
chloroplastic; Contains: RecName: Full=Ribulose
bisphosphate carboxylase small chain P3, chloroplastic;
Contains: RecName: Full=Ribulose bisphosphate
carboxylase small chain P4, chloroplastic; Contains:
RecName: Full=Ribulose bisphosphate carboxylase small
chain P5, chloroplastic; Contains: RecName:
Full=Ribulose bisphosphate carboxylase small chain P6,
chloroplastic; Contains: RecName: Full=Ribulose
bisphosphate carboxylase small chain P7, chloroplastic;
Contains: RecName: Full=Ribulose bisphosphate
carboxylase small chain P8, chloroplastic; Flags:
Precursor
gi|18428|emb|CAA35584.1| unnamed protein product [Euglena gracilis]
Length = 1273
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 95/132 (71%), Gaps = 7/132 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 338
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 339 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 398
Query: 161 FLIQKPTTTTST 172
F++Q+P+ ++S+
Sbjct: 399 FVVQRPSGSSSS 410
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 95/132 (71%), Gaps = 7/132 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 625
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 626 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 685
Query: 161 FLIQKPTTTTST 172
F++Q+P+ ++S+
Sbjct: 686 FVVQRPSGSSSS 697
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 7/128 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 1200
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 1201 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1260
Query: 161 FLIQKPTT 168
F++Q+P++
Sbjct: 1261 FVVQRPSS 1268
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 99/156 (63%), Gaps = 21/156 (13%)
Query: 18 LKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
+KP A+LP + + MK WNP+NNKKFE SYLP LSD IAK++
Sbjct: 119 MKPKVAAVLPF--------------TSEKDMKVWNPVNNKKFETFSYLPPLSDAQIAKQV 164
Query: 78 DYMLKKGWIPCLEFD--EVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L
Sbjct: 165 DMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVL 224
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
EI EC++AYP Y+R AF++ KQ Q +SF++Q+P
Sbjct: 225 REISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 260
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 768
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 769 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 828
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 829 FVVQRP 834
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 1056
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 1057 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1116
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 1117 FVVQRP 1122
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 91/126 (72%), Gaps = 8/126 (6%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 913
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R LAF++ KQ Q +S
Sbjct: 914 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVIS 972
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 973 FVVQRP 978
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 89/126 (70%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 481
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD YWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 482 SGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 541
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 542 FVVQRP 547
>gi|32307566|gb|AAP79188.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1
[Bigelowiella natans]
Length = 229
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 87/120 (72%)
Query: 47 CMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPG 106
C + +P NN +FE +SY ++ IA +I+YM+ G +PC+EFD+ G + RE+S MPG
Sbjct: 63 CEEVVDPANNARFETMSYTREFTERDIATQINYMIGMGAVPCIEFDQNGEIFREHSNMPG 122
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFG D+ ++NEI ECK+ PN++IR L F+N KQ QCM FL+ KP
Sbjct: 123 YYDGRYWTMWKLPMFGATDAGAVMNEIMECKRNNPNSFIRVLGFDNIKQVQCMGFLVSKP 182
>gi|255760385|gb|ACU32661.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Chlorella pyrenoidosa]
Length = 181
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 105/170 (61%), Gaps = 18/170 (10%)
Query: 8 APVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGS--KTRCMKTWNPINNKKFEALSYL 65
APVA GLK K++ A ++TVSNGS KT M+ W PINNK FE SYL
Sbjct: 9 APVAVRPVAGLKQ-------AKNTSA--ARTVSNGSIQKTTAMQVWTPINNKMFETFSYL 59
Query: 66 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVH-------RENSKMPGYYDGRYWTMWKL 118
P L+D I++++DY++ GW PCLEF E + R N+ YYD RYWTMWKL
Sbjct: 60 PPLTDAEISRQVDYIVNNGWTPCLEFAESASAYASNENCIRMNNTTCLYYDNRYWTMWKL 119
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
PMFGC D Q+L E+ C++A+P+AYIR + F+ +Q Q FL+ +P+T
Sbjct: 120 PMFGCTDGHQVLQEVANCRRAFPDAYIRMVGFDPIRQVQVAGFLVNRPST 169
>gi|307111911|gb|EFN60145.1| hypothetical protein CHLNCDRAFT_29368 [Chlorella variabilis]
Length = 184
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 13/171 (7%)
Query: 10 VAGSGYLGLKP-TSKALLPVKDSIAWSSKTVSNGS--KTRCMKTWNPINNKKFEALSYLP 66
VA + ++P S L K++ A ++TVSNGS K M+ W P+NNK FE S+LP
Sbjct: 5 VAAIAPVAVRPMASTPLKQAKNTFA--ARTVSNGSIKKVSAMQVWTPLNNKMFETFSFLP 62
Query: 67 SLSDDSIAKEIDYMLKKGWIPCLEF--------DEVGYVHRENSKMPGYYDGRYWTMWKL 118
L+D I++++DY+++ GW PCLEF D+ + + +P YYD RYW MWKL
Sbjct: 63 PLTDGEISRQVDYIVRNGWTPCLEFADADHAYVDDTSTIRLRGNAVPLYYDNRYWCMWKL 122
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
PMFGC D Q+L EIQ C++A+P+AYIR + F++ +Q Q L+ +P +
Sbjct: 123 PMFGCTDGQQVLREIQNCRRAFPDAYIRLVGFDSVRQVQVAGLLVNRPASV 173
>gi|223346|prf||0709274A carboxylase S,RBP
Length = 123
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPG 106
M+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+ E++K P
Sbjct: 1 MQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPR 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFG D +Q++ E+ E AYP A++R + FNN +Q QC+SF+ P
Sbjct: 61 YYDGRYWTMWKLPMFGTTDPAQVVKELDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 120
Query: 167 TT 168
+
Sbjct: 121 ES 122
>gi|76574179|gb|ABA46872.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 115
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + GYYDGRYWTMWKLPMFGC D+ Q++ E++ECKK YP A+IR + F+N
Sbjct: 63 ENHRSSGYYDGRYWTMWKLPMFGCTDAVQVVKELEECKKEYPKAFIRIIGFDN 115
>gi|356567276|ref|XP_003551847.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase
small chain 1, chloroplastic-like [Glycine max]
Length = 195
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S A PV + + SN + +CM+ W P+ KKFE LS+LP S + +
Sbjct: 23 FTGLK--SMAGFPVTKTNYDINSIASNSERVQCMQVWPPVGKKKFETLSHLPPFSREQLL 80
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KE++ +L+ G IPCLEF+ E G+V+REN + P Y DGRYWTMWKLPM GC DS+Q+L +
Sbjct: 81 KEVEXLLRNGXIPCLEFELEQGFVYRENHRSPEYNDGRYWTMWKLPMIGCTDSAQVLKGV 140
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
E KAYP A++R + F+N +Q QC+ F+ K + S
Sbjct: 141 DEAVKAYPTAFVRIIGFDNVRQVQCVIFIAYKSNASFS 178
>gi|302848289|ref|XP_002955677.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Volvox carteri f. nagariensis]
gi|28797561|gb|AAO46873.1| ribulose-bisphosphate carboxylase small subunit Vc3 [Volvox
carteri]
gi|300259086|gb|EFJ43317.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Volvox carteri f. nagariensis]
Length = 185
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 7/129 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRF 105
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+N KQ Q M
Sbjct: 106 GPVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMG 165
Query: 161 FLIQKPTTT 169
FL+Q+P +
Sbjct: 166 FLVQRPKSA 174
>gi|302848303|ref|XP_002955684.1| ribulose-bisphosphate carboxylase small subunit [Volvox carteri f.
nagariensis]
gi|300259093|gb|EFJ43324.1| ribulose-bisphosphate carboxylase small subunit [Volvox carteri f.
nagariensis]
Length = 185
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 7/138 (5%)
Query: 39 VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GY 96
V+ ++ M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E Y
Sbjct: 37 VATPAQANKMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAY 96
Query: 97 VHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN 151
V E++ G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+
Sbjct: 97 VSNESTVRFGPVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFD 156
Query: 152 NQKQGQCMSFLIQKPTTT 169
N KQ Q M FL+Q+P +
Sbjct: 157 NVKQVQIMGFLVQRPKSA 174
>gi|16975084|pdb|1GK8|I Chain I, Rubisco From Chlamydomonas Reinhardtii
gi|16975085|pdb|1GK8|K Chain K, Rubisco From Chlamydomonas Reinhardtii
gi|16975086|pdb|1GK8|M Chain M, Rubisco From Chlamydomonas Reinhardtii
gi|16975087|pdb|1GK8|O Chain O, Rubisco From Chlamydomonas Reinhardtii
gi|157836607|pdb|2V63|I Chain I, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836608|pdb|2V63|J Chain J, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836609|pdb|2V63|K Chain K, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836610|pdb|2V63|L Chain L, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836611|pdb|2V63|M Chain M, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836612|pdb|2V63|N Chain N, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836613|pdb|2V63|O Chain O, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836614|pdb|2V63|P Chain P, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
gi|157836623|pdb|2V67|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836624|pdb|2V67|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836625|pdb|2V67|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836626|pdb|2V67|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836627|pdb|2V67|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836628|pdb|2V67|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836629|pdb|2V67|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836630|pdb|2V67|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
gi|157836639|pdb|2V68|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836640|pdb|2V68|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836641|pdb|2V68|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836642|pdb|2V68|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836643|pdb|2V68|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836644|pdb|2V68|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836645|pdb|2V68|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836646|pdb|2V68|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
gi|157836655|pdb|2V69|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836656|pdb|2V69|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836657|pdb|2V69|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836658|pdb|2V69|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836659|pdb|2V69|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836660|pdb|2V69|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836661|pdb|2V69|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836662|pdb|2V69|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
gi|157836671|pdb|2V6A|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836672|pdb|2V6A|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836673|pdb|2V6A|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836674|pdb|2V6A|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836675|pdb|2V6A|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836676|pdb|2V6A|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836677|pdb|2V6A|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|157836678|pdb|2V6A|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
gi|211939006|pdb|2VDH|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939007|pdb|2VDH|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939008|pdb|2VDH|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939009|pdb|2VDH|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939010|pdb|2VDH|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939011|pdb|2VDH|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939012|pdb|2VDH|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939013|pdb|2VDH|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
gi|211939022|pdb|2VDI|I Chain I, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939023|pdb|2VDI|J Chain J, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939024|pdb|2VDI|K Chain K, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939025|pdb|2VDI|L Chain L, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939026|pdb|2VDI|M Chain M, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939027|pdb|2VDI|N Chain N, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939028|pdb|2VDI|O Chain O, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
gi|211939029|pdb|2VDI|P Chain P, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
Length = 140
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG- 106
W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G
Sbjct: 3 VWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGS 62
Query: 107 ----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL
Sbjct: 63 VSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 122
Query: 163 IQKPTTT 169
+Q+P T
Sbjct: 123 VQRPKTA 129
>gi|76574262|gb|ABA46912.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++ + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVGIIGFDN 115
>gi|60593630|pdb|1UW9|C Chain C, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593632|pdb|1UW9|F Chain F, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593634|pdb|1UW9|I Chain I, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593635|pdb|1UW9|J Chain J, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593637|pdb|1UW9|M Chain M, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593639|pdb|1UW9|P Chain P, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593641|pdb|1UW9|T Chain T, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593643|pdb|1UW9|W Chain W, L290f-a222t Chlamydomonas Rubisco Mutant
gi|60593646|pdb|1UWA|C Chain C, L290f Mutant Rubisco From Chlamydomonas
gi|60593648|pdb|1UWA|F Chain F, L290f Mutant Rubisco From Chlamydomonas
gi|60593650|pdb|1UWA|I Chain I, L290f Mutant Rubisco From Chlamydomonas
gi|60593651|pdb|1UWA|J Chain J, L290f Mutant Rubisco From Chlamydomonas
gi|60593653|pdb|1UWA|M Chain M, L290f Mutant Rubisco From Chlamydomonas
gi|60593655|pdb|1UWA|P Chain P, L290f Mutant Rubisco From Chlamydomonas
gi|60593657|pdb|1UWA|T Chain T, L290f Mutant Rubisco From Chlamydomonas
gi|60593659|pdb|1UWA|W Chain W, L290f Mutant Rubisco From Chlamydomonas
Length = 140
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRF 60
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M
Sbjct: 61 GSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMG 120
Query: 161 FLIQKPTTT 169
FL+Q+P +
Sbjct: 121 FLVQRPKSA 129
>gi|307111587|gb|EFN59821.1| hypothetical protein CHLNCDRAFT_59545 [Chlorella variabilis]
Length = 184
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 96/146 (65%), Gaps = 10/146 (6%)
Query: 34 WSSKTVSNGS--KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF 91
++++TVSNGS K M+ W P+NNK FE S+LP L+D I++++DY+++ GW PCLEF
Sbjct: 28 FAARTVSNGSIKKVSAMQVWTPLNNKMFETFSFLPPLTDGEISRQVDYIVRNGWTPCLEF 87
Query: 92 --------DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNA 143
D+ + + +P YYD RYW MWKLPMFGC D Q+L EIQ C++A+P+A
Sbjct: 88 ADADHAYVDDTSTIRLRGNAVPLYYDNRYWCMWKLPMFGCTDGQQVLREIQNCRRAFPDA 147
Query: 144 YIRCLAFNNQKQGQCMSFLIQKPTTT 169
YIR + F++ +Q Q L+ +P +
Sbjct: 148 YIRLVGFDSVRQVQVAGLLVNRPASV 173
>gi|159492353|gb|ABW97363.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit 1 [Lotharella amoeboformis]
Length = 235
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 7/147 (4%)
Query: 27 PVKDSIAWSSKTVSNGSKTR-------CMKTWNPINNKKFEALSYLPSLSDDSIAKEIDY 79
PV S+TV+ R C + +P NK++E +SY+P S+ +I+Y
Sbjct: 33 PVAGRTMQFSRTVTPAPTFRSAVAQAYCEEVVDPTANKRYETMSYMPDFSERDQEAQINY 92
Query: 80 MLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139
M++ G IPC+EFD+ G + RENSKMPGYYDGRYWTMWKLPMFG D+ ++ E++EC+K
Sbjct: 93 MIQNGLIPCVEFDKNGDMFRENSKMPGYYDGRYWTMWKLPMFGATDARSVMAEVKECQKY 152
Query: 140 YPNAYIRCLAFNNQKQGQCMSFLIQKP 166
P++YIR L F+N KQ QCM FL+ KP
Sbjct: 153 NPSSYIRILGFDNIKQVQCMGFLVAKP 179
>gi|76574286|gb|ABA46924.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 85/113 (75%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALVKQIEYLLRSRWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D+ Q+ E++ECKK YP A++ + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKELEECKKEYPRAFVGIIGFDN 115
>gi|642977|emb|CAA55779.1| ribulose-bisphosphate carboxylase [Euglena gracilis]
Length = 1275
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 7/128 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 1143 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 1202
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 1203 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1262
Query: 161 FLIQKPTT 168
F++Q+P++
Sbjct: 1263 FVVQRPSS 1270
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 99/156 (63%), Gaps = 21/156 (13%)
Query: 18 LKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
+KP A+LP + + MK WNP+NNKKFE SYLP LSD IAK++
Sbjct: 119 MKPKVAAVLPF--------------TSEKDMKVWNPVNNKKFETFSYLPPLSDAQIAKQV 164
Query: 78 DYMLKKGWIPCLEFD--EVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L
Sbjct: 165 DMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVL 224
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
EI EC++AYP Y+R AF++ KQ Q +SF++Q+P
Sbjct: 225 REISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 260
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 338
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 339 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 398
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 399 FVVQRP 404
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 423 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 482
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 483 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 542
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 543 FVVQRP 548
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 567 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 626
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 627 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 686
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 687 FVVQRP 692
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 711 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 770
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 771 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 830
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 831 FVVQRP 836
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 855 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 914
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 915 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 974
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 975 FVVQRP 980
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 90/126 (71%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD--EVGYVHRENS--- 102
MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+
Sbjct: 999 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRF 1058
Query: 103 --KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +S
Sbjct: 1059 SGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1118
Query: 161 FLIQKP 166
F++Q+P
Sbjct: 1119 FVVQRP 1124
>gi|76574280|gb|ABA46921.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAB Group]
Length = 115
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGY DGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++R + F+N
Sbjct: 63 ENHRSPGYCDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVRIIGFDN 115
>gi|76574228|gb|ABA46895.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|76574244|gb|ABA46903.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|76574254|gb|ABA46908.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 115
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 85/113 (75%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++ + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVGIIGFDN 115
>gi|159492357|gb|ABW97365.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit 3 [Lotharella amoeboformis]
Length = 176
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 10 VAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLS 69
V G LG P + + ++ + S + C + +P N ++E +SY+P +
Sbjct: 16 VTFGGRLG-APVASRTMAFSRTVTPAPTFRSAVANAYCEEVVDPTRNVRYETMSYMPDFN 74
Query: 70 DDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ +++YM++ G IPC+EFD+ G RENS+MP YYDGRYWTMWKLPMFG D+ Q+
Sbjct: 75 ERDQEAQVNYMIRNGLIPCIEFDQQGVTFRENSRMPNYYDGRYWTMWKLPMFGATDARQV 134
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+ E++EC++ P AYIR L F+N KQ QCM FL+ KP+
Sbjct: 135 MQEVRECQRNNPKAYIRILGFDNIKQVQCMGFLVAKPS 172
>gi|302848299|ref|XP_002955682.1| hypothetical protein VOLCADRAFT_106899 [Volvox carteri f.
nagariensis]
gi|300259091|gb|EFJ43322.1| hypothetical protein VOLCADRAFT_106899 [Volvox carteri f.
nagariensis]
Length = 284
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 7/129 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 145 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRF 204
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+N KQ Q M
Sbjct: 205 GPVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMG 264
Query: 161 FLIQKPTTT 169
FL+Q+P +
Sbjct: 265 FLVQRPKSA 273
>gi|159488835|ref|XP_001702406.1| hypothetical protein CHLREDRAFT_108283 [Chlamydomonas reinhardtii]
gi|158271074|gb|EDO96901.1| predicted protein [Chlamydomonas reinhardtii]
Length = 139
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG- 106
W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G
Sbjct: 2 VWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGS 61
Query: 107 ----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL
Sbjct: 62 VSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 121
Query: 163 IQKPTTT 169
+Q+P +
Sbjct: 122 VQRPKSA 128
>gi|20150198|pdb|1IR2|I Chain I, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150200|pdb|1IR2|J Chain J, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150202|pdb|1IR2|K Chain K, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150204|pdb|1IR2|L Chain L, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150206|pdb|1IR2|M Chain M, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150208|pdb|1IR2|N Chain N, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150210|pdb|1IR2|O Chain O, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150212|pdb|1IR2|P Chain P, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150214|pdb|1IR2|1 Chain 1, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150216|pdb|1IR2|2 Chain 2, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150218|pdb|1IR2|3 Chain 3, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150220|pdb|1IR2|4 Chain 4, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150222|pdb|1IR2|5 Chain 5, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150224|pdb|1IR2|6 Chain 6, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150226|pdb|1IR2|7 Chain 7, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
gi|20150228|pdb|1IR2|8 Chain 8, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
Length = 140
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG- 106
W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G
Sbjct: 3 VWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGS 62
Query: 107 ----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL
Sbjct: 63 VSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 122
Query: 163 IQKPTTT 169
+Q+P +
Sbjct: 123 VQRPKSA 129
>gi|76574232|gb|ABA46897.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 115
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+ + ++I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEVLLRQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPMFGC D++Q+ E++ECKK YP A++ + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMFGCTDATQVAKELEECKKEYPRAFVGIIGFDN 115
>gi|132157|sp|P00870.1|RBS1_SPIOL RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
Length = 123
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPG 106
M+ W P+ KKFE LSYLP L+ + + E++Y+L KGWIP LEF+ + G+V+RE+ K PG
Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPG 60
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YYDGRYWTMWKLPMFG D +Q++NE++E KKA P+A++R + FN++++ QC+SF+ KP
Sbjct: 61 YYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKP 120
Query: 167 T 167
Sbjct: 121 A 121
>gi|32307568|gb|AAP79189.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2
[Bigelowiella natans]
Length = 252
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 106/163 (65%), Gaps = 12/163 (7%)
Query: 16 LGLKPTSKAL-LPVKD----SIAWSSKTVSNGSKTR-------CMKTWNPINNKKFEALS 63
L + P+S+ L PV S +++++T+S R C + +P NN K+E +S
Sbjct: 23 LSMGPSSQQLGAPVATRAAMSTSFAARTMSPAPTFRSAIANAYCEEVVDPANNLKYETMS 82
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC 123
Y ++ IA +I+YM++ G IPC+EFD+ G + RE+S+MPGYYDGRYWTMWKLPMFG
Sbjct: 83 YTNVFTEQDIAAQINYMIQNGLIPCVEFDKGGQIFREHSRMPGYYDGRYWTMWKLPMFGA 142
Query: 124 NDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
D+ ++ EI ECK+ P+++IR L F+N KQ QCM FL +P
Sbjct: 143 TDAGAVMREIAECKQNNPDSFIRVLGFDNIKQVQCMGFLASRP 185
>gi|2754843|gb|AAB95215.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
Length = 147
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 96/138 (69%), Gaps = 6/138 (4%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEAL 62
TAP S ++GLK TS PV A T+ SNG + +CMK W + KKFE L
Sbjct: 12 TAPAQASMVAPFVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETL 69
Query: 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFG 122
SYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFG
Sbjct: 70 SYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFG 129
Query: 123 CNDSSQILNEIQECKKAY 140
C D++Q++ E ECKK Y
Sbjct: 130 CTDAAQVVKEAAECKKEY 147
>gi|13241105|gb|AAK16229.1|AF044397_1 ribulose-1,5-bisphosphate carboxylase small subunit R3 [Flaveria
ramosissima]
Length = 133
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 94/130 (72%), Gaps = 3/130 (2%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W P+ KK+E LS LP+L++ +AKE+DY+ W+PCLEF+ E G+V
Sbjct: 1 SNGGRVQCMKVWPPLGKKKYETLSSLPNLTETQLAKEVDYLPPNKWVPCLEFELEHGFVS 60
Query: 99 RENSKMPGYYDGRYWTMWKLP--MFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
N + P YYDGR WT+WKLP MFGC DSSQ++ E+ ECKK YP A+IR + F+N +Q
Sbjct: 61 PYNRRSPRYYDGRSWTIWKLPMFMFGCTDSSQVMKELGECKKEYPQAWIRIIGFDNVRQV 120
Query: 157 QCMSFLIQKP 166
QC+SF+ KP
Sbjct: 121 QCISFIASKP 130
>gi|76574210|gb|ABA46886.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 115
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHR 99
SNG + +CMK W KKFE LSYLP+L D+++ K+I+Y+L+ WIPCLEF G+V R
Sbjct: 3 SNGGRVQCMKVWPIEGKKKFETLSYLPTLVDEALLKQIEYLLRSKWIPCLEFSHEGFVWR 62
Query: 100 ENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
EN + PGYYDGRYWTMWKLPM GC D++Q+ E++ECKK YP A++ + F+N
Sbjct: 63 ENHRSPGYYDGRYWTMWKLPMSGCTDATQVAKELEECKKEYPRAFVGIIGFDN 115
>gi|4098852|gb|AAD00448.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Chloromonas sp. ANT3]
Length = 140
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 91/130 (70%), Gaps = 7/130 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENS-KM 104
K W P+NNK++E SYLP+L+ + IAK++DY+++ GW PCLEF + +V EN+ +
Sbjct: 1 FKVWQPVNNKQYETFSYLPALTTEQIAKQVDYVIRNGWTPCLEFADPSSSFVSNENTVRF 60
Query: 105 PG----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWTMWKLPMFGC D+SQ+L EI C A+P +Y R +AF+N KQ QCM
Sbjct: 61 RGASSNYYDNRYWTMWKLPMFGCTDASQVLKEIAACNAAFPESYSRLVAFDNNKQVQCMG 120
Query: 161 FLIQKPTTTT 170
FL+Q+P T
Sbjct: 121 FLVQRPKNAT 130
>gi|193875826|gb|ACF24549.1| ribulose bisphosphate carboxylase/oxygenase small subunit 1
[Gymnochlora stellata]
Length = 185
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 13 SGYLGLKPTSKALLPVKDSIAWSSKTVSNG-SKTRCMKTWNPINNKKFEALSYLPSLSDD 71
S LG TS+A ++T + ++ C + +P NN ++E +SYLP ++
Sbjct: 28 SSQLGAPVTSRATTTSFSRAVTPAQTFRSAVAQAYCEEVVDPTNNARYETMSYLPDFNER 87
Query: 72 SIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131
+ +++YM+ G +PC+EFD++G RENS+MP YYDGRYWT+WKLPMFG ++ ++
Sbjct: 88 DMENQVNYMINNGLVPCIEFDKMGTTFRENSRMPNYYDGRYWTLWKLPMFGATNARSVMQ 147
Query: 132 EIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E+ ECK+ P++YIR L F+N KQ QC++FL KP
Sbjct: 148 EVNECKRNNPDSYIRILGFDNIKQVQCVAFLASKP 182
>gi|132136|sp|P17537.1|RBS_CHLMO RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|22555|emb|CAA32152.1| unnamed protein product [Chlamydomonas moewusii]
Length = 168
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 7/126 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSKM- 104
K W P+NNK++E SYLP L++ I +++DY++ GW PCLEF + +V N+
Sbjct: 29 FKVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRL 88
Query: 105 ----PGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
GYYD RYWTMWKLPMFGC D SQ+L E+ C+ A+PN YIR +AF+N KQ QCM
Sbjct: 89 QGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMG 148
Query: 161 FLIQKP 166
FL+Q+P
Sbjct: 149 FLVQRP 154
>gi|2754837|gb|AAB95212.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
Length = 147
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 3/127 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 23 FVGLKSTSS--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 80
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 81 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 140
Query: 134 QECKKAY 140
ECKK Y
Sbjct: 141 AECKKEY 147
>gi|3914594|sp|Q38692.1|RBS6_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 6,
chloroplastic; Short=RuBisCO small subunit 6; AltName:
Full=rbcS4; Flags: Precursor
gi|2654375|emb|CAA82266.1| ribulosebiphosphate carboxylase, small subunit [Acetabularia
peniculus]
Length = 182
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
M+A++ + + S K SK + P K SI S K R M W P NNK FE
Sbjct: 1 MAATMMSKTIISS-----KQCSKPIAPPKVSINKGFVNTSAAIKNREMMVWQPFNNKMFE 55
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYW 113
SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW
Sbjct: 56 TFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYW 115
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
TMWKLPMFGC D SQ+L EIQ C KA+P+AYIR + F+ +Q Q FL+ +P + T
Sbjct: 116 TMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPPSAT 172
>gi|1352820|sp|P26985.2|RBS_BATOE RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor
gi|2654261|emb|CAA40538.1| ribulose bisphosphate carboxylase small subunit [Batophora
oerstedii]
Length = 175
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 92/143 (64%), Gaps = 9/143 (6%)
Query: 37 KTVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--D 92
+ +SNG SK+R M W P NNK FE SYLP L+DD I K++DY+L+ W PCLEF
Sbjct: 23 RFLSNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGS 82
Query: 93 EVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
+ YV +N+ G Y D RYWTMWKLPMFGC D SQ+L EI C KA+P+AYIR
Sbjct: 83 DQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRL 142
Query: 148 LAFNNQKQGQCMSFLIQKPTTTT 170
+ F+ +Q Q FL+ +P + T
Sbjct: 143 VCFDANRQVQISGFLVHRPESAT 165
>gi|2754833|gb|AAB95210.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
gi|2754845|gb|AAB95216.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
Length = 147
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 92/127 (72%), Gaps = 3/127 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +++
Sbjct: 23 FVGLKSTSS--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVETL 80
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 81 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 140
Query: 134 QECKKAY 140
ECKK Y
Sbjct: 141 AECKKEY 147
>gi|228356|prf||1803224A RuBisCO:SUBUNIT=small:ISOTYPE=1
Length = 175
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 92/143 (64%), Gaps = 9/143 (6%)
Query: 37 KTVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--D 92
+ +SNG SK+R M W P NNK FE SYLP L+DD I K++DY+L+ W PCLEF
Sbjct: 23 RFLSNGTISKSRAMMVWXPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGS 82
Query: 93 EVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
+ YV +N+ G Y D RYWTMWKLPMFGC D SQ+L EI C KA+P+AYIR
Sbjct: 83 DQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRL 142
Query: 148 LAFNNQKQGQCMSFLIQKPTTTT 170
+ F+ +Q Q FL+ +P + T
Sbjct: 143 VCFDANRQVQISGFLVHRPESAT 165
>gi|2754835|gb|AAB95211.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
gi|2754839|gb|AAB95213.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
Length = 147
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 92/127 (72%), Gaps = 3/127 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 23 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 80
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 81 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 140
Query: 134 QECKKAY 140
ECKK Y
Sbjct: 141 AECKKEY 147
>gi|2754841|gb|AAB95214.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
Length = 147
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 6/138 (4%)
Query: 7 TAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEAL 62
TAP S ++GLK TS PV A T+ SNG + +CMK W + KKFE L
Sbjct: 12 TAPAQASMVAPFVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETL 69
Query: 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFG 122
SYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTM KLPMFG
Sbjct: 70 SYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMLKLPMFG 129
Query: 123 CNDSSQILNEIQECKKAY 140
C D++Q++ E ECKK Y
Sbjct: 130 CTDAAQVVKEAAECKKEY 147
>gi|78058384|gb|ABB17556.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Haematococcus pluvialis]
Length = 141
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 7/130 (5%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMP 105
M W PINNK++E SYLP L+ D IA+++DY++ GWIPCLEF + YV ++
Sbjct: 1 MMVWQPINNKQYETFSYLPPLTSDQIARQVDYVVGNGWIPCLEFADASQAYVSNASTVRF 60
Query: 106 G-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
G YYD RYWT+WKLPMFGC D S +L EI KA+P AYIR +AF+N +Q Q MS
Sbjct: 61 GSVSACYYDNRYWTLWKLPMFGCTDPSAVLTEISRASKAFPQAYIRMVAFDNVRQVQIMS 120
Query: 161 FLIQKPTTTT 170
FL+Q+P T
Sbjct: 121 FLVQRPRAAT 130
>gi|132107|sp|P07398.1|RBS3_WHEAT RecName: Full=Ribulose bisphosphate carboxylase small chain clone
512; Short=RuBisCO small subunit
gi|21866|emb|CAA25057.1| unnamed protein product [Triticum aestivum]
Length = 113
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 86/104 (82%)
Query: 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFG 122
+YLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFG
Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFG 60
Query: 123 CNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
C D++Q++NE++E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 61 CTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 104
>gi|6063022|gb|AAF03096.1|AF162195_1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
precursor [Lactuca sativa]
Length = 174
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG + +CMK W PI KK+E LS LP LSD++++KEIDY+++ WIPCLEF+ E G+V+
Sbjct: 50 SNGGRVQCMKVWPPIGLKKYETLSCLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY 140
RE+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK Y
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEY 151
>gi|168066784|ref|XP_001785312.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663095|gb|EDQ49880.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 156
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 86/121 (71%), Gaps = 8/121 (6%)
Query: 23 KALLPVKDSIAWSSKT-----VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
KA +K + ++SK+ V NGS+ +CM+ WNPI KFE SYLP LSDD IA+++
Sbjct: 36 KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 95
Query: 78 DYMLKKGWIPCLEFDEVGYVHREN---SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
DYM+++ IPC+EFD VG V R N S GYYDGRYWTMWKLPMFGC DSSQ+L EIQ
Sbjct: 96 DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 155
Query: 135 E 135
E
Sbjct: 156 E 156
>gi|2754847|gb|AAB95217.1| ribulose 1,5 bisphosphate carboxylase small subunit [Fritillaria
agrestis]
Length = 147
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 91/127 (71%), Gaps = 3/127 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK T PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+
Sbjct: 23 FVGLKSTFA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESL 80
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E
Sbjct: 81 LKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEA 140
Query: 134 QECKKAY 140
ECKK Y
Sbjct: 141 AECKKEY 147
>gi|321273536|gb|ADW80768.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
Length = 97
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+VHREN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTETQLAKEVDYLLRNKWVPCLEFELEHGFVHRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|132114|sp|P16133.1|RBS5_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 5,
chloroplastic; Short=RuBisCO small subunit 5; Flags:
Precursor
gi|732548|emb|CAA36107.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia peniculus]
Length = 184
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 86/134 (64%), Gaps = 7/134 (5%)
Query: 44 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHREN 101
K+R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN
Sbjct: 41 KSREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNEN 100
Query: 102 SKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q
Sbjct: 101 CIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQV 160
Query: 157 QCMSFLIQKPTTTT 170
Q FL+ +P T T
Sbjct: 161 QISGFLVHRPPTAT 174
>gi|169216|gb|AAA33716.1| ribulose 1,5-bisphosphate carboxylase, partial [Petunia x hybrida]
Length = 106
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 84/105 (80%), Gaps = 1/105 (0%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
+E LSY P L+D+ + KE++Y+L KGW+PCLEF+ + +++RE PGYYDGRYWTMWK
Sbjct: 1 YETLSYFPDLTDEQLFKEVEYLLNKGWVPCLEFELKHKFIYREYHASPGYYDGRYWTMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
LPMFGC D++Q+L E+QE KKAYPNA+IR + F N +Q QC+SF+
Sbjct: 61 LPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFENVRQVQCISFI 105
>gi|255580407|ref|XP_002531030.1| ribulose-bisphosphate carboxylase, putative [Ricinus communis]
gi|223529383|gb|EEF31347.1| ribulose-bisphosphate carboxylase, putative [Ricinus communis]
Length = 94
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 70/76 (92%)
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
GYVHRENS+MPGYYDGRYWT+WKLPMFGCNDSSQ+LNEI ECKKAYPNAYIRCLAF+N +
Sbjct: 18 GYVHRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKAYPNAYIRCLAFDNTR 77
Query: 155 QGQCMSFLIQKPTTTT 170
Q QCMSF+IQ P TT
Sbjct: 78 QAQCMSFVIQNPKATT 93
>gi|6272547|gb|AAF06097.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
Length = 176
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 7/128 (5%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVH 98
SNG K +CMK W + KKFE LSYLP L+ + +AK PCLEF+ E G V+
Sbjct: 52 SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLAKP------SCIGPCLEFELEHGLVY 105
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
RE++++PGYYDGRYWTMWKLPMFGC D++Q+L E+ E K +P+ Y R + F+N +Q QC
Sbjct: 106 REHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQC 165
Query: 159 MSFLIQKP 166
+SFL KP
Sbjct: 166 ISFLAYKP 173
>gi|321273588|gb|ADW80794.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273590|gb|ADW80795.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273592|gb|ADW80796.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273596|gb|ADW80798.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273598|gb|ADW80799.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273600|gb|ADW80800.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273602|gb|ADW80801.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
Length = 97
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPTLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273546|gb|ADW80773.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273548|gb|ADW80774.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273550|gb|ADW80775.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
Length = 97
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTETQLAKEVDYLLRSKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273594|gb|ADW80797.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
Length = 97
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPLGKKKYETLSYLPTLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273556|gb|ADW80778.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273582|gb|ADW80791.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273584|gb|ADW80792.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273586|gb|ADW80793.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
Length = 97
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273552|gb|ADW80776.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
Length = 97
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTEAQLAKEVDYLLRSKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVIKELQECKKEYPQAWI 97
>gi|321273323|gb|ADW80664.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273325|gb|ADW80665.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273388|gb|ADW80694.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
gi|321273392|gb|ADW80696.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
gi|321273396|gb|ADW80698.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
gi|321273398|gb|ADW80699.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
gi|321273410|gb|ADW80705.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273412|gb|ADW80706.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273526|gb|ADW80763.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273532|gb|ADW80766.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273538|gb|ADW80769.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria linearis]
gi|321273604|gb|ADW80802.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
Length = 97
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPNLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273376|gb|ADW80688.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
Length = 97
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMEELQECKKEYPQAWI 97
>gi|321273542|gb|ADW80771.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
Length = 97
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPLGKKKYETLSYLPDLTETQLAKEVDYLLRSKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|132101|sp|P16136.1|RBS3_ACEAT RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|732553|emb|CAA36110.1| ribulose bisphophate carboxylase, small subunit precursor
[Acetabularia acetabulum]
Length = 182
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 87/136 (63%), Gaps = 7/136 (5%)
Query: 42 GSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHR 99
+K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y
Sbjct: 37 ATKNRGMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGN 96
Query: 100 ENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
EN G Y D RYWTMWKLPMFGC D+SQ+L+EIQ C KA+P+AYIR + F+ +
Sbjct: 97 ENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANR 156
Query: 155 QGQCMSFLIQKPTTTT 170
Q Q FL+ +P + T
Sbjct: 157 QVQISGFLVHRPPSAT 172
>gi|321273327|gb|ADW80666.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273400|gb|ADW80700.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273404|gb|ADW80702.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273406|gb|ADW80703.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273408|gb|ADW80704.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273424|gb|ADW80712.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273426|gb|ADW80713.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273428|gb|ADW80714.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria linearis]
gi|321273430|gb|ADW80715.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria linearis]
gi|321273432|gb|ADW80716.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria linearis]
gi|321273534|gb|ADW80767.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
gi|321273572|gb|ADW80786.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273574|gb|ADW80787.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273576|gb|ADW80788.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273578|gb|ADW80789.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
gi|321273580|gb|ADW80790.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
Length = 97
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273351|gb|ADW80676.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria angustifolia]
gi|321273368|gb|ADW80684.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273370|gb|ADW80685.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273372|gb|ADW80686.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273374|gb|ADW80687.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273378|gb|ADW80689.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273380|gb|ADW80690.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273382|gb|ADW80691.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
Length = 97
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273353|gb|ADW80677.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria angustifolia]
gi|321273355|gb|ADW80678.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273357|gb|ADW80679.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria angustifolia]
gi|321273359|gb|ADW80680.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria angustifolia]
gi|321273365|gb|ADW80683.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273416|gb|ADW80708.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273418|gb|ADW80709.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273420|gb|ADW80710.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273422|gb|ADW80711.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
gi|321273434|gb|ADW80717.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273438|gb|ADW80719.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273440|gb|ADW80720.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273442|gb|ADW80721.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273444|gb|ADW80722.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273554|gb|ADW80777.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria angustifolia]
gi|321273558|gb|ADW80779.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273560|gb|ADW80780.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273562|gb|ADW80781.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273564|gb|ADW80782.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273566|gb|ADW80783.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
gi|321273570|gb|ADW80785.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
Length = 97
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273386|gb|ADW80693.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria cronquistii]
gi|321273394|gb|ADW80697.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
gi|321273540|gb|ADW80770.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria linearis]
Length = 97
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPLGKKKYETLSYLPNLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|262072919|dbj|BAI47767.1| ribulose bisphosphate carboxylase small subunit [Ulva pertusa]
gi|262072921|dbj|BAI47768.1| ribulose -1, 5-bisphosphate carboxylase/oxygenase small subunit
[Ulva pertusa]
Length = 180
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 87/136 (63%), Gaps = 8/136 (5%)
Query: 39 VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGY 96
V+N SK M W P+NNK FE S+LP LS IA+++DY++ GW CLEF + Y
Sbjct: 30 VANVSKASEMMVWTPLNNKMFETFSFLPPLSHGEIARQVDYIIANGWTGCLEFADSDCAY 89
Query: 97 VHRE------NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAF 150
V + NS P YYD RYWTMWKLPMFGC D +Q+L EI CK+A+P YIR +AF
Sbjct: 90 VQDKANVRFGNSASPNYYDNRYWTMWKLPMFGCTDPNQVLGEIDACKRAFPECYIRLVAF 149
Query: 151 NNQKQGQCMSFLIQKP 166
+N Q Q + FL+ +P
Sbjct: 150 DNIAQCQTIGFLVNRP 165
>gi|132073|sp|P16134.1|RBS1_ACEAT RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
chloroplastic; Short=RuBisCO small subunit 1; Flags:
Precursor
gi|732551|emb|CAA36108.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia acetabulum]
Length = 182
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 7/136 (5%)
Query: 42 GSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHR 99
+K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y
Sbjct: 37 ATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGN 96
Query: 100 ENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +
Sbjct: 97 ENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANR 156
Query: 155 QGQCMSFLIQKPTTTT 170
Q Q FL+ +P + T
Sbjct: 157 QVQISGFLVHRPPSAT 172
>gi|321273361|gb|ADW80681.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria angustifolia]
gi|321273363|gb|ADW80682.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273384|gb|ADW80692.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria pringlei]
gi|321273568|gb|ADW80784.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
Length = 97
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPLGKKKYETLSYLPDLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|132100|sp|P16131.1|RBS3_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor
gi|732546|emb|CAA36105.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia peniculus]
Length = 183
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 88/140 (62%), Gaps = 9/140 (6%)
Query: 40 SNGSKTRC--MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVG 95
SN + +C M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF +
Sbjct: 34 SNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQA 93
Query: 96 YVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAF 150
Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F
Sbjct: 94 YAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCF 153
Query: 151 NNQKQGQCMSFLIQKPTTTT 170
+ +Q Q FL+ +P + T
Sbjct: 154 DANRQVQISGFLVHRPPSAT 173
>gi|321273504|gb|ADW80752.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria kochiana]
gi|321273506|gb|ADW80753.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria kochiana]
gi|321273508|gb|ADW80754.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria kochiana]
Length = 97
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|132108|sp|P16132.1|RBS4_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
chloroplastic; Short=RuBisCO small subunit 4; Flags:
Precursor
gi|732547|emb|CAA36106.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia peniculus]
Length = 182
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Query: 43 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRE 100
+K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y E
Sbjct: 38 NKKREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNE 97
Query: 101 NSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
N G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q
Sbjct: 98 NCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ 157
Query: 156 GQCMSFLIQKPTTTT 170
Q FL+ +P + T
Sbjct: 158 VQISGFLVHRPPSAT 172
>gi|321273446|gb|ADW80723.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273448|gb|ADW80724.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273450|gb|ADW80725.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273452|gb|ADW80726.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273454|gb|ADW80727.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273456|gb|ADW80728.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273460|gb|ADW80730.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273464|gb|ADW80732.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273468|gb|ADW80734.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
Length = 97
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|132089|sp|P16135.1|RBS2_ACEAT RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
chloroplastic; Short=RuBisCO small subunit 2; Flags:
Precursor
gi|732552|emb|CAA36109.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia acetabulum]
Length = 173
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 7/136 (5%)
Query: 42 GSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHR 99
+K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y
Sbjct: 28 ATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGN 87
Query: 100 ENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +
Sbjct: 88 ENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANR 147
Query: 155 QGQCMSFLIQKPTTTT 170
Q Q FL+ +P + T
Sbjct: 148 QVQISGFLVHRPPSAT 163
>gi|132109|sp|P16137.1|RBS4_ACEAT RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
chloroplastic; Short=RuBisCO small subunit 4; Flags:
Precursor
gi|732554|emb|CAA36111.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia acetabulum]
Length = 182
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFE 60
MSA++ V S + ++ K S A TV+N K R M W P NNK FE
Sbjct: 1 MSAAMMNKSVVLSKQCTKPAATPKVVTSKRSFA---STVAN--KNREMMVWQPFNNKMFE 55
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYW 113
S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW
Sbjct: 56 TFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYW 115
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
TMWKLPMFGC D SQ+L+EIQ C A+P+AYIR + F+ +Q Q FL+ +P + T
Sbjct: 116 TMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPPSAT 172
>gi|321273478|gb|ADW80739.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
Length = 97
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKGYPQAWI 97
>gi|321273414|gb|ADW80707.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
Length = 97
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKEPQECKKEYPQAWI 97
>gi|321273402|gb|ADW80701.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria anomala]
Length = 97
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E L YLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLPYLPDLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273472|gb|ADW80736.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273476|gb|ADW80738.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273480|gb|ADW80740.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273482|gb|ADW80741.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273484|gb|ADW80742.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273490|gb|ADW80745.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273492|gb|ADW80746.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
gi|321273494|gb|ADW80747.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273498|gb|ADW80749.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273500|gb|ADW80750.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273502|gb|ADW80751.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273510|gb|ADW80755.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
gi|321273512|gb|ADW80756.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
gi|321273516|gb|ADW80758.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
gi|321273518|gb|ADW80759.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
gi|321273520|gb|ADW80760.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
gi|321273522|gb|ADW80761.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
gi|321273524|gb|ADW80762.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
Length = 97
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273514|gb|ADW80757.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria palmeri]
Length = 97
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELAEAQLAKEVDYLIRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273474|gb|ADW80737.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
Length = 97
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVVKELQECKKEYPQAWI 97
>gi|148908844|gb|ABR17527.1| unknown [Picea sitchensis]
Length = 169
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 93/156 (59%), Gaps = 28/156 (17%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K + A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 36 AFTGLKSTAQFPSSMKTNNAGAEWEQKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 95
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQIL 130
+ +LK G PGYYDGRYW MWKLPMFGC ++SQ+L
Sbjct: 96 EQ-------LLKYG------------------STPGYYDGRYWVMWKLPMFGCTEASQVL 130
Query: 131 NEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
NE+ EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct: 131 NEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 166
>gi|321273496|gb|ADW80748.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
Length = 97
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPLGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273528|gb|ADW80764.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
Length = 97
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPNLTETQLAKEVDYLLRNKWVPCLEFELGHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273530|gb|ADW80765.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria floridana]
Length = 97
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E SYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETPSYLPNLTETQLAKEVDYLLRNEWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273466|gb|ADW80733.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
Length = 97
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGSVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|71041718|pdb|1UZH|C Chain C, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041720|pdb|1UZH|F Chain F, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041722|pdb|1UZH|I Chain I, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041723|pdb|1UZH|J Chain J, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041725|pdb|1UZH|M Chain M, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041727|pdb|1UZH|P Chain P, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041729|pdb|1UZH|T Chain T, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
gi|71041731|pdb|1UZH|W Chain W, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
Length = 122
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 81/122 (66%), Gaps = 11/122 (9%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGY 107
M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E H +
Sbjct: 1 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAE----HSNPEEF--- 53
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
YWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL+Q+P
Sbjct: 54 ----YWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPK 109
Query: 168 TT 169
T
Sbjct: 110 TA 111
>gi|132115|sp|P16138.1|RBS5_ACEAT RecName: Full=Ribulose bisphosphate carboxylase small chain 5,
chloroplastic; Short=RuBisCO small subunit 5; Flags:
Precursor
gi|732555|emb|CAA36112.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia acetabulum]
Length = 183
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
Query: 43 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRE 100
+K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y E
Sbjct: 39 NKNRDMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNE 98
Query: 101 NSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQ 155
N G Y D RYWTMWKLPMFGC D SQ+L+EIQ C A+P+AYIR + F+ +Q
Sbjct: 99 NCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQ 158
Query: 156 GQCMSFLIQKPTTTT 170
Q FL+ +P + T
Sbjct: 159 VQISGFLVHRPPSAT 173
>gi|321273390|gb|ADW80695.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
Length = 97
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLE + E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPNLTETQLAKEVDYLLRNKWVPCLESELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|262072923|dbj|BAI47769.1| ribulose -1, 5-bisphosphate carboxylase/oxygenase small subunit
[Ulva pertusa]
Length = 180
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 8/136 (5%)
Query: 39 VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGY 96
V+N SK M W P+NNK FE S+LP LS IA+++DY++ GW CLEF + Y
Sbjct: 30 VANVSKASEMMVWTPLNNKMFETFSFLPPLSHGEIARQVDYIIANGWTGCLEFADSDCAY 89
Query: 97 VHRE------NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAF 150
V + NS YYD RYWTMWKLPMFGC D +Q+L EI CK+A+P YIR +AF
Sbjct: 90 VQDKANVRFGNSASANYYDNRYWTMWKLPMFGCTDPNQVLGEIDACKRAFPECYIRLVAF 149
Query: 151 NNQKQGQCMSFLIQKP 166
+N Q Q + FL+ +P
Sbjct: 150 DNIAQCQTIGFLVNRP 165
>gi|3914595|sp|Q38693.1|RBS7_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 7,
chloroplastic; Short=RuBisCO small subunit 7; AltName:
Full=rbcS1; Flags: Precursor
gi|2654374|emb|CAA82265.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Acetabularia peniculus]
Length = 183
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 85/134 (63%), Gaps = 7/134 (5%)
Query: 44 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHREN 101
K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN
Sbjct: 40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNEN 99
Query: 102 SKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
G Y D RYWTMWKLPMFGC D SQ+L+++Q C KA+P+AYIR + F+ +Q
Sbjct: 100 CIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQV 159
Query: 157 QCMSFLIQKPTTTT 170
Q FL+ +P + T
Sbjct: 160 QICGFLVHRPPSAT 173
>gi|424513154|emb|CCO66738.1| predicted protein [Bathycoccus prasinos]
Length = 170
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 46 RCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMP 105
+ M W P NK FE S+LP LSD ++K++ Y+L GW PCLEF++ + + +
Sbjct: 25 KSMMVWRPHGNKMFETFSFLPPLSDADLSKQVQYLLNNGWTPCLEFEDPAHAYTDGHGNS 84
Query: 106 G--------YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ 157
G YYD RYW MWKLPM+GCND S++L E++ C KA+PN Y+RC F+N KQ Q
Sbjct: 85 GLDSSINTNYYDNRYWVMWKLPMYGCNDPSEVLTEVKACVKAFPNCYVRCAGFDNIKQVQ 144
Query: 158 CMSFLIQKP 166
C SFL+ +P
Sbjct: 145 CHSFLVYRP 153
>gi|321273544|gb|ADW80772.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria chlorifolia]
Length = 97
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTETQLAKEVDYLLRSKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGR WTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRCWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273606|gb|ADW80803.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria sonorensis]
Length = 97
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LS LP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSCLPNLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273486|gb|ADW80743.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
Length = 97
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWAPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273348|gb|ADW80675.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria kochiana]
Length = 97
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+D +L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDCLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273488|gb|ADW80744.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria vaginata]
Length = 97
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+++ W+PCLEF+ E G V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLIRNKWVPCLEFELEHGSVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|321273436|gb|ADW80718.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria ramosissima]
Length = 97
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPDLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFG DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGRTDSAQVMKELQECKKEYPQAWI 97
>gi|424512862|emb|CCO66446.1| predicted protein [Bathycoccus prasinos]
Length = 170
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 46 RCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMP 105
+ M W P NK FE S+LP LSD + K++ Y+L GW PCLEF++ + + +
Sbjct: 25 KSMMVWRPHGNKMFETFSFLPPLSDADLGKQVQYLLNNGWTPCLEFEDPAHAYTDGHGNS 84
Query: 106 G--------YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ 157
G YYD RYW MWKLPM+GCND S++L E++ C KA+PN Y+RC F+N KQ Q
Sbjct: 85 GLDSSINTNYYDNRYWVMWKLPMYGCNDPSEVLAEVKACVKAFPNCYVRCAGFDNIKQVQ 144
Query: 158 CMSFLIQKP 166
C SFL+ +P
Sbjct: 145 CHSFLVYRP 153
>gi|321273458|gb|ADW80729.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
gi|321273470|gb|ADW80735.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
Length = 97
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPM GC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMSGCTDSAQVMKELQECKKEYPQAWI 97
>gi|303290674|ref|XP_003064624.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454222|gb|EEH51529.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 38 TVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF---- 91
VS G SK+ M+ WNP NNK FE S+LP LSD IA+++ Y++ GW PC+EF
Sbjct: 16 AVSTGKASKSSAMQVWNPTNNKFFETFSFLPPLSDQEIARQVQYLINNGWAPCIEFEGAG 75
Query: 92 ----DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
D G+ ++S GYYD RYW MWKLPM+GC ++L E++ C +A+P+ +IR
Sbjct: 76 KAYCDTHGWSGLDSSVNAGYYDNRYWVMWKLPMYGCTSPDEVLAEVRACTRAFPDCFIRV 135
Query: 148 LAFNNQKQGQCMSFLIQKPT 167
F+N KQ QC SFL +P
Sbjct: 136 AGFDNIKQVQCSSFLAHRPA 155
>gi|303290676|ref|XP_003064625.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454223|gb|EEH51530.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 183
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 38 TVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF---- 91
VS G SK+ M+ WNP NNK FE S+LP LSD IA+++ Y++ GW PC+EF
Sbjct: 16 AVSTGKASKSSAMQVWNPTNNKFFETFSFLPPLSDQEIARQVQYLINNGWAPCIEFEGAG 75
Query: 92 ----DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
D G+ ++S GYYD RYW MWKLPM+GC ++L E++ C +A+P+ +IR
Sbjct: 76 KAYCDTHGWSGLDSSVNAGYYDNRYWVMWKLPMYGCTSPDEVLAEVRACTRAFPDCFIRV 135
Query: 148 LAFNNQKQGQCMSFLIQKPT 167
F+N KQ QC SFL +P
Sbjct: 136 AGFDNIKQVQCSSFLAHRPA 155
>gi|303290342|ref|XP_003064458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454056|gb|EEH51363.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 186
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 38 TVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF---- 91
VS G SK+ M+ WNP NNK FE S+LP LSD IA+++ Y++ GW PC+EF
Sbjct: 16 AVSTGKASKSSAMQVWNPTNNKFFETFSFLPPLSDQEIARQVQYLINNGWAPCIEFEGAG 75
Query: 92 ----DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
D G+ ++S GYYD RYW MWKLPM+GC ++L E++ C +A+P+ +IR
Sbjct: 76 KAYCDTHGWSGLDSSVNAGYYDNRYWVMWKLPMYGCTSPDEVLAEVRACTRAFPDCFIRV 135
Query: 148 LAFNNQKQGQCMSFLIQKPT 167
F+N KQ QC SFL +P
Sbjct: 136 AGFDNIKQVQCSSFLAHRPA 155
>gi|321273462|gb|ADW80731.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria trinervia]
Length = 97
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYLP L++ +AKE+D +L+ W+PCLEF+ E G+V+REN+ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLPELTEAQLAKEVDCLLRNKWVPCLEFELEHGFVYRENASSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|51849619|dbj|BAD42340.1| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit
[Nannochloris bacillaris]
Length = 180
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 87/145 (60%), Gaps = 10/145 (6%)
Query: 29 KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPC 88
K+ A S+ T+ N T W P+NNK FE S+LP LS+ I+K++DYM++ + PC
Sbjct: 25 KNVFAVSNSTIKN---TSAFMVWTPVNNKFFETFSFLPPLSESEISKQVDYMVRNAFTPC 81
Query: 89 LEFDEV--GYVH-----RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYP 141
LEF E YV R GY D RYW MWKLPMFGC D SQ+L EI C KA+P
Sbjct: 82 LEFSEPENAYVGDASTIRLCGTSSGYQDNRYWPMWKLPMFGCTDGSQVLKEIAACTKAFP 141
Query: 142 NAYIRCLAFNNQKQGQCMSFLIQKP 166
AYIR +AF+ +Q Q FL+ +P
Sbjct: 142 GAYIRLVAFDASRQVQVAGFLVHRP 166
>gi|237510762|gb|ACQ99367.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Ankistrodesmus convolutus]
Length = 165
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--------VGYVHREN 101
W P+NNK FE SYLP L+D+ IA+++DY++ GW PCLEF + V +N
Sbjct: 26 VWQPVNNKFFETFSYLPPLNDEQIARQVDYIVNNGWTPCLEFSDSQTAYMSNTNVVRIQN 85
Query: 102 SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSF 161
YYD RYWT+WKLPMFGC D SQ+L EI C KA P+AY+R AF+ +Q Q S
Sbjct: 86 GATANYYDNRYWTLWKLPMFGCTDPSQVLKEIAACVKACPDAYVRMAAFDANRQVQVASM 145
Query: 162 LIQKPTT 168
L+ +P +
Sbjct: 146 LVHRPAS 152
>gi|82257|pir||A05119 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
petunia (clone pSSU 117) (fragment)
Length = 106
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWK 117
+E LSYLP L+ + + KE++Y+L KGW+PCLEF+ + +++RE PGYYDGRYWTMWK
Sbjct: 1 YETLSYLPDLTGEQLLKEVEYLLDKGWVPCLEFELKHKFIYREYHASPGYYDGRYWTMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
LPMFGC D++Q+L E+QE KKAYPNA + F+N +Q QC+SF+
Sbjct: 61 LPMFGCTDATQVLGELQEAKKAYPNAGSGIIGFDNVRQVQCISFI 105
>gi|20218815|emb|CAC84492.1| putative ribulose bisphosphate carboxylase small chain [Pinus
pinaster]
Length = 148
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 38/147 (25%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV----------------------- 94
KFE LSYLP L+++ + KE++Y+L+ W+PCLEFD V
Sbjct: 2 KFETLSYLPQLTEEQLVKEVEYLLRNKWVPCLEFDLVSFYFFKIDLWRFELSYYVENKIG 61
Query: 95 ---------------GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139
G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ++NE+ EC KA
Sbjct: 62 TNFYYELCVCMCAQEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVNECAKA 121
Query: 140 YPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YP A+IR + F+N +Q QC+SF++ KP
Sbjct: 122 YPKAFIRVIGFDNVRQVQCISFIVHKP 148
>gi|357479621|ref|XP_003610096.1| Ribulose bisphosphate carboxylase small chain [Medicago
truncatula]
gi|355511151|gb|AES92293.1| Ribulose bisphosphate carboxylase small chain [Medicago
truncatula]
Length = 98
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKD-SIAWSSKTVSNGSKTRCMKTWNPINNKKF 59
MSA F APVAG G++GLK S +L P SI W KTVSNGSK CMKTWNPINNKKF
Sbjct: 1 MSAGTFAAPVAGPGFVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKF 60
Query: 60 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV 94
E LSYLP LSDDSIAKEIDYMLKK W PCLEFDEV
Sbjct: 61 ETLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFDEV 95
>gi|149392308|gb|ABR25985.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
Length = 133
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 86/120 (71%), Gaps = 3/120 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK S A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLK--STAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKEL 133
>gi|149392567|gb|ABR26086.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
Length = 103
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 78/94 (82%)
Query: 73 IAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE 132
+ K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E
Sbjct: 1 LLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKE 60
Query: 133 IQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
++E KKAYP+A++R + F+N +Q Q +SF+ KP
Sbjct: 61 LEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 94
>gi|225465|prf||1303356A RuBisCO small subunit
Length = 138
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 14/137 (10%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-----EVGY------ 96
MK WNP+NNK +E SYLP LSD IAK++D ++ KGWIPCLEF E Y
Sbjct: 1 MKVWNPVNNKFWETFSYLPPLSDAEIAKQVDMIIAKGWIPCLEFSLREISERAYPCCYIA 60
Query: 97 ---VHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ 153
+R + GYYD RYWTMWKLPMFGC D+SQ+L E+ + A P ++R AF++
Sbjct: 61 NDNTYRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLKELSPLEFAAPENFVRLAAFDSV 120
Query: 154 KQGQCMSFLIQKPTTTT 170
KQ Q SF++Q+P+ ++
Sbjct: 121 KQVQVTSFVVQRPSGSS 137
>gi|255074175|ref|XP_002500762.1| ribulose bisphosphate carboxylase small chain 1, chloroplast
[Micromonas sp. RCC299]
gi|226516025|gb|ACO62020.1| ribulose bisphosphate carboxylase small chain 1, chloroplast
[Micromonas sp. RCC299]
Length = 179
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 10/142 (7%)
Query: 36 SKTVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-- 91
+ VS G + T M W P NK FE S+LP LSD +A+++ Y+L GW PC+EF
Sbjct: 14 APVVSTGKAANTNSMMVWQPHGNKFFETFSFLPPLSDQEVARQVQYLLNNGWTPCIEFES 73
Query: 92 ------DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
D G+ ++S GYYD RYW MWKLPM+GC + ++L EI+ C +A+P +I
Sbjct: 74 AAKAYADTHGWSGLDSSVTAGYYDNRYWVMWKLPMYGCTNPDEVLQEIRACTQAFPECFI 133
Query: 146 RCLAFNNQKQGQCMSFLIQKPT 167
R F+N KQ QC SFL +PT
Sbjct: 134 RVAGFDNIKQVQCSSFLAHRPT 155
>gi|321273339|gb|ADW80672.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
Length = 97
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYL +L++ +AK+ DY+L+ W+PCLEF+ E G+V+ EN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLLNLTEAQLAKKADYLLRNKWVPCLEFESEHGFVYHENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMEELQECKKEYPQAWI 97
>gi|321273329|gb|ADW80667.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273335|gb|ADW80670.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273341|gb|ADW80673.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
gi|321273343|gb|ADW80674.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
Length = 97
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYL +L++ +AK+ DY+L+ W+PCLEF+ E G+V+ EN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLLNLTEAQLAKKADYLLRNKWVPCLEFESEHGFVYHENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|16224234|gb|AAL15646.1|AF411547_1 ribulose-1,5-bisphosphate carboxylase small subunit [Medicago
sativa]
Length = 100
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 71 DSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
+ +A+E++Y+++KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMW+LP+FG DSSQ+
Sbjct: 1 EQLAREVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQV 60
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
L E+ +CK YP+++IR + F+N +Q QC+SF+ P
Sbjct: 61 LKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 97
>gi|255075025|ref|XP_002501187.1| ribulose bisphosphate carboxylase small chain 1, chloroplast
[Micromonas sp. RCC299]
gi|226516450|gb|ACO62445.1| ribulose bisphosphate carboxylase small chain 1, chloroplast
[Micromonas sp. RCC299]
Length = 191
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 84/141 (59%), Gaps = 10/141 (7%)
Query: 36 SKTVSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-- 91
+ VS G + T M W P NK FE S+LP LSD +A+++ Y+L GW PC+EF
Sbjct: 14 APVVSTGKAANTNSMMVWQPHGNKFFETFSFLPPLSDQEVARQVQYLLNNGWTPCIEFES 73
Query: 92 ------DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
D G+ ++S GYYD RYW MWKLPM+GC + ++L EI+ C A+P+ +I
Sbjct: 74 AAKAYADTHGWSGLDSSVTAGYYDNRYWVMWKLPMYGCTNPEEVLQEIRACTSAFPDCFI 133
Query: 146 RCLAFNNQKQGQCMSFLIQKP 166
R F+N KQ QC SFL +P
Sbjct: 134 RVAGFDNIKQVQCSSFLAHRP 154
>gi|338746116|emb|CCC15107.1| ribulose-bisphosphate carboxylase [Lepidodinium chlorophorum]
Length = 212
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 98/148 (66%), Gaps = 3/148 (2%)
Query: 18 LKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
L+P + PV+D ++ +T ++ ++P N KK+E LSYLP L+++ IAK+I
Sbjct: 67 LEPLAGRPSPVRDQPLAAAH---GAMQTAQIQAYSPFNGKKYETLSYLPPLTNEDIAKQI 123
Query: 78 DYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 137
+M+K W PCLE + G ++ + P YYD RYW+++KLPMFGC D ++++ EI+ CK
Sbjct: 124 TFMIKNHWTPCLEVSDDGDIYLNTAMGPNYYDNRYWSLYKLPMFGCTDPNEVIREIEACK 183
Query: 138 KAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
+ +PNA +R +AF++++Q Q F++++
Sbjct: 184 REFPNAKVRVIAFDSKRQVQTAGFIVRE 211
>gi|321273337|gb|ADW80671.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
Length = 97
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYL +L++ +A++ DY+L+ W+PCLEF+ E G+V+ EN++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLLNLTEAQLAEKADYLLRNKWVPCLEFESEHGFVYHENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|229893640|gb|ACQ90229.1| TuMV resistance protein-like protein [Brassica rapa subsp.
chinensis]
Length = 162
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 78 DYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
Y+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QEC
Sbjct: 67 QYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQEC 126
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
K YPNA+IR + F+N +Q QC+SF+ KP + T
Sbjct: 127 KTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSFT 160
>gi|321273333|gb|ADW80669.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
Length = 97
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+E LSYL +L++ +AK+ DY+L+ W+PCLEF+ E G+V+ E+++ PGYY
Sbjct: 1 VWPPVGKKKYETLSYLLNLTEAQLAKKADYLLRNKWVPCLEFESEHGFVYHEDARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|408455885|gb|AFU67072.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial [Solanum melongena]
Length = 89
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 49 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGY 107
+ W PIN KK+E LSYLP LSD+ + KEIDY+++ GW+PCLEF+ E G+V+RE + PGY
Sbjct: 1 QVWPPINKKKYETLSYLPDLSDEQLLKEIDYLIRSGWVPCLEFETEHGFVYREYHQSPGY 60
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
YDGRYWTMWKLPMFGC D+ Q+LNE+ EC
Sbjct: 61 YDGRYWTMWKLPMFGCTDAIQVLNEVGEC 89
>gi|145355860|ref|XP_001422165.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582405|gb|ABP00482.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 169
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 11/162 (6%)
Query: 18 LKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEI 77
+ ++A V ++A ++ V+N + M W P NK FE S+LP LSD I+K++
Sbjct: 1 MSAITQASAQVAKTVAVTTGKVANA---KSMMIWRPHGNKMFETFSFLPPLSDAEISKQV 57
Query: 78 DYMLKKGWIPCLEF--------DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
Y+L GW PC+EF D G+ + + S GYYD RYW MWKLPM+GC + ++
Sbjct: 58 QYLLNNGWTPCIEFEDSAHAYTDGHGWANMDTSINAGYYDNRYWVMWKLPMYGCQNPDEV 117
Query: 130 LNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
+ EI C K +P+ Y+R F+N KQ QC +FL +P + +
Sbjct: 118 IAEINTCIKCFPDCYVRVAGFDNIKQVQCSAFLAHRPASEAA 159
>gi|321273331|gb|ADW80668.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Flaveria bidentis]
Length = 97
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYY 108
W P+ KK+ LSYL +L++ +AK+ DY+L+ W+PCLEF+ E G+V+ EN++ PGYY
Sbjct: 1 VWPPVGKKKYGTLSYLLNLTEAQLAKKADYLLRNKWVPCLEFESEHGFVYHENARSPGYY 60
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYI 145
DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+I
Sbjct: 61 DGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWI 97
>gi|149392711|gb|ABR26158.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
Length = 129
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 85/116 (73%), Gaps = 3/116 (2%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S + S VSNG + RCM+ W KKFE LSYLP L+ + +
Sbjct: 16 FQGLKFT--AGLPVNRRSSSSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDL 73
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQI 129
K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+
Sbjct: 74 LKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQV 129
>gi|167515243|gb|ABZ81845.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Ulva mutabilis]
gi|167515245|gb|ABZ81846.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Ulva mutabilis]
Length = 180
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 8/127 (6%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRE----- 100
M+ W P NNK FE S+LP LS IA+++DY++ GW CLEF + YV +
Sbjct: 39 MRVWTPHNNKMFETFSFLPPLSHGEIARQVDYIIANGWTSCLEFADSDCAYVQDKANIRF 98
Query: 101 -NSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
NS YYD RYWTMWKLPMFGC + +++L EI CK+A+P +YIR +AF+N Q Q +
Sbjct: 99 GNSASCNYYDNRYWTMWKLPMFGCTNPNEVLGEIDSCKRAFPESYIRLVAFDNIAQCQTI 158
Query: 160 SFLIQKP 166
FL+ +P
Sbjct: 159 GFLVNRP 165
>gi|15809660|gb|AAL07277.1| ribulose-1,5-bisphosphate carboxylase small subunit [Sequoia
sempervirens]
Length = 93
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 72/92 (78%)
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
K++DY+LK W+PC+EFDE Y+ R + PGYYDGRYW MWKLPMFGCND+SQ+++EI
Sbjct: 2 KQVDYLLKNKWVPCIEFDEDAYIKRIHGNTPGYYDGRYWVMWKLPMFGCNDASQVMSEIN 61
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
E +KAYP A++R + F+ +Q QC+SF+ KP
Sbjct: 62 EVRKAYPKAFVRIIGFDAVRQVQCISFIAHKP 93
>gi|308813856|ref|XP_003084234.1| Ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit (IC)
[Ostreococcus tauri]
gi|116056117|emb|CAL58650.1| Ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit (IC)
[Ostreococcus tauri]
Length = 168
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 91/152 (59%), Gaps = 11/152 (7%)
Query: 28 VKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIP 87
V ++A S+ V+N + M W P NK FE S+LP LSD IAK+ Y+L GW P
Sbjct: 10 VAKTVAVSTGKVANA---KSMMIWRPHGNKMFETFSFLPPLSDAEIAKQCQYLLNNGWTP 66
Query: 88 CLEFDEV--------GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139
C+EF++ G+ + ++S YYD RYW MWKLPM+GC ++ ++L E+ KK
Sbjct: 67 CIEFEDAEHAYADGHGWSNLDSSINSLYYDNRYWVMWKLPMYGCQNTDEVLAEVNMAKKC 126
Query: 140 YPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
+P+ YIR + F+N KQ QC FL+ +P + +
Sbjct: 127 FPDCYIRVVGFDNIKQVQCAGFLVYRPASGAA 158
>gi|424513046|emb|CCO66630.1| predicted protein [Bathycoccus prasinos]
Length = 134
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 8/116 (6%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPG--------YYDG 110
FE S+LP LSD ++K++ Y+L GW PCLEF++ + + + G YYD
Sbjct: 2 FETFSFLPPLSDADLSKQVQYLLNNGWTPCLEFEDPAHAYTDGHGNSGLDSSINTNYYDN 61
Query: 111 RYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
RYW MWKLPM+GCND S++L E++ C KA+PN Y+RC F+N KQ QC SFL+ +P
Sbjct: 62 RYWVMWKLPMYGCNDPSEVLTEVKACVKAFPNCYVRCAGFDNIKQVQCHSFLVYRP 117
>gi|116109615|gb|ABJ74187.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Artemisia annua]
Length = 90
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 81 LKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139
++ GW+PCLEF+ E G+V+REN + PGYYDGR WTMWKLPMFGC DS+Q++ E+QE KK
Sbjct: 1 IRNGWVPCLEFEVEHGFVYRENHRSPGYYDGRTWTMWKLPMFGCTDSAQVMKELQEAKKE 60
Query: 140 YPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 61 YPNAFIRIIGFDNVRQVQCISFIAHKP 87
>gi|170320|gb|AAA34111.1| ribulose-1,5-bisphosphate carboxylase, partial [Nicotiana
sylvestris]
gi|223650|prf||0905192A carboxylase,RBP
Length = 86
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Query: 85 WIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNA 143
W+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A
Sbjct: 1 WVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQA 60
Query: 144 YIRCLAFNNQKQGQCMSFLIQKP 166
+IR + F+N +Q QC+SF+ KP
Sbjct: 61 WIRIIGFDNVRQVQCISFIAYKP 83
>gi|125380592|gb|ABN41481.1| putative chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Cucumis sativus]
Length = 93
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 85 WIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNA 143
W+PC+EFD G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ++ EI+E KK YP+A
Sbjct: 1 WVPCVEFDIGSGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDA 60
Query: 144 YIRCLAFNNQKQGQCMSFLIQKPTT 168
+IR + F+N +Q QC+SF+ KP
Sbjct: 61 FIRVIGFDNVRQVQCISFIAYKPQV 85
>gi|117661825|gb|ABK55670.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Cucumis sativus]
Length = 125
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 80/108 (74%), Gaps = 2/108 (1%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK ++ + K+++ ++ SNG K +CMK W P+ +KFE LSYLP +S++ ++
Sbjct: 19 FTGLKSSAGFPITRKNNVDITT-LASNGGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLS 77
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
KE DY+L+ GW+PC+EFD G+V+REN + PGYYDGRYWTMWKLPMF
Sbjct: 78 KECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGYYDGRYWTMWKLPMF 125
>gi|354460737|gb|AER24546.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial [Vigna unguiculata]
Length = 103
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Query: 75 KEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
KEIDY+L+ GWIPCLEF + + +RE ++ PGYYDGRYWTMWKLPMFGC D++Q+L E+
Sbjct: 8 KEIDYLLRNGWIPCLEFTLQDPFPYREQNRSPGYYDGRYWTMWKLPMFGCTDATQVLQEV 67
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
E + A+PN ++R + F+N +Q QC+SF+ K
Sbjct: 68 VEARTAHPNGFVRIIGFDNVRQVQCISFIAYK 99
>gi|145355862|ref|XP_001422166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582406|gb|ABP00483.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 177
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 11/140 (7%)
Query: 43 SKTRCMKTWNPI---NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-------- 91
S+ RC + + + + FE S+LP LSD I+K++ Y+L GW PC+EF
Sbjct: 28 SRERCTDRFRFVFTSSRRMFETFSFLPPLSDAEISKQVQYLLNNGWTPCIEFEDSAHAYT 87
Query: 92 DEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN 151
D G+ + + S GYYD RYW MWKLPM+GC + +++ EI C K +P+ Y+R F+
Sbjct: 88 DGHGWANMDTSINAGYYDNRYWVMWKLPMYGCQNPDEVIAEINTCIKCFPDCYVRVAGFD 147
Query: 152 NQKQGQCMSFLIQKPTTTTS 171
N KQ QC +FL +P + +
Sbjct: 148 NIKQVQCSAFLAHRPASEAA 167
>gi|132072|sp|P16129.1|RBS1_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 1;
Short=RuBisCO small subunit 1
gi|1345492|emb|CAA36103.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia peniculus]
Length = 126
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 75/116 (64%), Gaps = 7/116 (6%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWT 114
SYLP L+D+ I+K++DY+L W PCLEF + Y +N G Y D RYWT
Sbjct: 1 FSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWT 60
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
MWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL+ +P + T
Sbjct: 61 MWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPPSAT 116
>gi|145356084|ref|XP_001422271.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582511|gb|ABP00588.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 134
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--------DEVGYVHRENSKMPGYY 108
+ FE S+LP LSD I+K++ Y+L GW PC+EF D G+ + + S GYY
Sbjct: 2 RMFETFSFLPPLSDAEISKQVQYLLNNGWTPCIEFEDSAHAYTDGHGWANMDTSINAGYY 61
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
D RYW MWKLPM+GC + +++ EI C K +P Y+R F+N KQ QC +FL +P +
Sbjct: 62 DNRYWVMWKLPMYGCQNPDEVIAEINTCIKCFPECYVRVAGFDNIKQVQCSAFLAHRPAS 121
Query: 169 TTS 171
+
Sbjct: 122 EAA 124
>gi|308813858|ref|XP_003084235.1| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit (IC)
[Ostreococcus tauri]
gi|118511755|emb|CAL58651.2| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit (IC)
[Ostreococcus tauri]
Length = 191
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 34/175 (19%)
Query: 28 VKDSIAWSSKTVSNGSKTRCMKTWNPINNK-----------------------KFEALSY 64
V ++A S+ V+N + M W P NK FE S+
Sbjct: 10 VAKTVAVSTGKVANA---KSMMIWRPHGNKYVSRKIKAHARGCVLAITRASRPMFETFSF 66
Query: 65 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--------GYVHRENSKMPGYYDGRYWTMW 116
LP LSD IAK+ Y+L GW PC+EF++ G+ + ++S YYD RYW MW
Sbjct: 67 LPPLSDAEIAKQCQYLLNNGWTPCIEFEDAEHAYADGHGWSNLDSSINSLYYDNRYWVMW 126
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
KLPM+GC ++ ++L E+ KK +P+ YIR + F+N KQ QC FL+ +P + +
Sbjct: 127 KLPMYGCQNTDEVLAEVNMAKKCFPDCYIRVVGFDNIKQVQCAGFLVYRPASGAA 181
>gi|81157951|dbj|BAE48226.1| RuBisCO small subunits [Chlorella pyrenoidosa]
Length = 124
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVH-------RENSKMPGYYDGRYWTMW 116
YLP L+D I++++DY++ GW PCLEF E + R N+ YYD RYWTMW
Sbjct: 1 YLPPLTDAEISRQVDYIVNNGWTPCLEFAESTSAYASNENCIRMNNTTCLYYDNRYWTMW 60
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLPMFGC D Q+L E+ C++A+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 61 KLPMFGCTDGHQVLAEVSNCRRAFPDAYIRLVGFDPVRQVQVAGFLVHRP 110
>gi|132156|sp|P13951.1|RBS_SINAL RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|1345574|emb|CAA34458.1| unnamed protein product [Sinapis alba]
Length = 82
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 63/80 (78%)
Query: 93 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN 152
E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA+IR + F+N
Sbjct: 3 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDN 62
Query: 153 QKQGQCMSFLIQKPTTTTST 172
+Q QC+SF+ KP + T
Sbjct: 63 NRQVQCISFIAYKPPSFTDA 82
>gi|22299047|ref|NP_682294.1| ribulose bisphosphate carboxylase small subunit
[Thermosynechococcus elongatus BP-1]
gi|381352851|pdb|2YBV|B Chain B, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352853|pdb|2YBV|D Chain D, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352855|pdb|2YBV|F Chain F, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352857|pdb|2YBV|H Chain H, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352859|pdb|2YBV|J Chain J, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352861|pdb|2YBV|L Chain L, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352863|pdb|2YBV|N Chain N, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|381352865|pdb|2YBV|P Chain P, Structure Of Rubisco From Thermosynechococcus Elongatus
gi|402550165|pdb|3ZXW|B Chain B, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
gi|402550167|pdb|3ZXW|D Chain D, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
gi|402550169|pdb|3ZXW|F Chain F, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
gi|402550171|pdb|3ZXW|H Chain H, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
gi|217138|dbj|BAA02739.1| ribulosebiphosphate carboxylase [Synechococcus sp.]
gi|22295229|dbj|BAC09056.1| ribulose bisphosphate carboxylase small subunit
[Thermosynechococcus elongatus BP-1]
gi|128168924|dbj|BAF48767.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Thermosynechococcus vulcanus]
gi|742244|prf||2009324B RuBisCO:SUBUNIT=small
Length = 118
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 11/115 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E SYLP LSD IA++I Y + +G+ PC+EF+E N+++ RYWTMW
Sbjct: 8 RRYETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETS-----NAEI------RYWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
KLP+F C ++ +LNE+Q+C+ YPN +IR +AF+N KQ Q MSF++ KP S
Sbjct: 57 KLPLFNCTNAQDVLNEVQQCRSEYPNCFIRVVAFDNIKQCQVMSFIVYKPNQANS 111
>gi|218246441|ref|YP_002371812.1| ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 8801]
gi|257059483|ref|YP_003137371.1| ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 8802]
gi|218166919|gb|ACK65656.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 8801]
gi|256589649|gb|ACV00536.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 8802]
Length = 111
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K+I+YML +G+IP +EF+E + P Y +WTM
Sbjct: 7 ERRYETLSYLPPLTDQQIVKQIEYMLDQGFIPGVEFEE--------NPEPQTY---FWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+FG + S Q+L EI+EC+ YPN+YIR + F+N KQ Q MSF++ KP T
Sbjct: 56 WKLPLFGASSSQQVLAEIRECRSEYPNSYIRVIGFDNIKQCQTMSFIVHKPNT 108
>gi|168063526|ref|XP_001783722.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664787|gb|EDQ51494.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 67/90 (74%), Gaps = 3/90 (3%)
Query: 80 MLKKGWIPCLEFDEVGYVHREN---SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136
M+++ IPC+EFD VG V R N S GYYDGRYWTMWKLPMFGC DSSQ+L EIQEC
Sbjct: 1 MIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQEC 60
Query: 137 KKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
K +YP+ ++R L F+++KQ Q FL+ +P
Sbjct: 61 KTSYPSCWVRVLGFDSKKQVQICGFLVARP 90
>gi|427713060|ref|YP_007061684.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 6312]
gi|427377189|gb|AFY61141.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 6312]
Length = 115
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 76/116 (65%), Gaps = 11/116 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E SYLP LSD IA++I Y + +G+ PC+EF+E +S YY WTM
Sbjct: 7 ERRYETFSYLPPLSDAQIARQIQYTIDQGYHPCVEFNE-------SSAAEIYY----WTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
WKLP+F C+ ++LNE+Q+C+ YPN YIR +AF+N KQ Q MSF++ KP + S
Sbjct: 56 WKLPLFDCSSPQEVLNEVQQCRSEYPNCYIRVVAFDNIKQCQVMSFIVHKPNQSGS 111
>gi|82619|pir||A05005 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
precursor (clone 234) - wheat (fragment)
Length = 138
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 28/153 (18%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 4 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 61
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ P E+
Sbjct: 62 LKQVDYLIRSKWVPCLEFSKVGFIFREHNASP-------------------------VEV 96
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 97 EEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 129
>gi|443320372|ref|ZP_21049477.1| ribulose bisphosphate carboxylase small subunit [Gloeocapsa sp. PCC
73106]
gi|442789922|gb|ELR99550.1| ribulose bisphosphate carboxylase small subunit [Gloeocapsa sp. PCC
73106]
Length = 113
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 79/115 (68%), Gaps = 11/115 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LS+LP L+D I ++IDYM+++G+IP +EF+E + P +WT+W
Sbjct: 8 RRYETLSFLPPLTDQQITRQIDYMIEQGYIPAIEFEE--------NPQPT---DHHWTLW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
KLP+F +S +++NE++EC+ YPN YIR + F+N KQ Q +SF++ KP +TT+
Sbjct: 57 KLPLFEARNSQEVINEVRECRSEYPNYYIRVIGFDNIKQCQTVSFIVHKPNSTTN 111
>gi|149392158|gb|ABR25937.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
Length = 85
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 63/76 (82%)
Query: 91 FDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAF 150
F +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F
Sbjct: 1 FSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGF 60
Query: 151 NNQKQGQCMSFLIQKP 166
+N +Q Q +SF+ KP
Sbjct: 61 DNVRQVQLISFIAYKP 76
>gi|19462|emb|CAA38345.1| ribulose bisphosphate carboxylase [Larix laricina]
Length = 80
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 90 EFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLA 149
EF+E G + R PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR +
Sbjct: 1 EFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIG 60
Query: 150 FNNQKQGQCMSFLIQKP 166
F+N +Q QC+SF++ KP
Sbjct: 61 FDNVRQVQCISFIVHKP 77
>gi|19852103|gb|AAM00006.1|AF493617_1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Acetabularia acetabulum]
Length = 126
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 7/115 (6%)
Query: 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTM 115
S+LP L+D+ I+K++DY+L W CLEF + Y +N Y D RYWTM
Sbjct: 2 SFLPPLTDEQISKQVDYILANSWTACLEFAASDQAYAGNDNCIRMRPVASTYQDNRYWTM 61
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
WKLPMFGC D SQ+L+EIQ C A+P+AYIR + F+ +Q Q FL+ +P + T
Sbjct: 62 WKLPMFGCTDGSQVLSEIQACTNAFPDAYIRFVCFDAYRQVQISGFLVHRPPSAT 116
>gi|157064949|gb|ABV04329.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Geitlerinema sp. PCC 8501]
Length = 118
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 15/117 (12%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSKMPGYYDGRYWT 114
+++E SYLPSL+D IA++I Y L +G+ PC+EF+E +H YWT
Sbjct: 8 RRYETFSYLPSLTDAQIARQIQYTLDQGYFPCIEFNEDSAAEIH-------------YWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
MWKLP+F ++LNE+Q+C+ +PN YIR +AF+N KQ Q MSF++ KP S
Sbjct: 55 MWKLPLFNATSPQEVLNEVQQCRSEFPNCYIRVVAFDNIKQCQVMSFIVYKPNQANS 111
>gi|428221688|ref|YP_007105858.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427995028|gb|AFY73723.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 111
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 77/114 (67%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D IAK+I Y+L +G+IP +EF+E + P Y +WT+
Sbjct: 7 ERRYETLSYLPPLTDAKIAKQIQYILSQGFIPAIEFNE--------TSEPTVY---FWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+FG + ++L+EIQ C+ Y N++IR + F+N KQ Q MSF++ KPT++
Sbjct: 56 WKLPLFGAKSTQEVLSEIQACRSEYSNSFIRVIGFDNVKQCQTMSFIVHKPTSS 109
>gi|302848297|ref|XP_002955681.1| hypothetical protein VOLCADRAFT_96577 [Volvox carteri f.
nagariensis]
gi|300259090|gb|EFJ43321.1| hypothetical protein VOLCADRAFT_96577 [Volvox carteri f.
nagariensis]
Length = 211
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 35/202 (17%)
Query: 1 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKK-- 58
M+A + + VA + + + + +K ++ + TV+ ++ M W P+NNK
Sbjct: 1 MAAMVMKSSVATAVVRPARSSVRPCAVLKPAV--KAATVTAPAQANKMMVWTPVNNKASM 58
Query: 59 -FEALSYLPSLSDDSIA-----------KEIDYMLKK------------GWIPCLEFDEV 94
L +LP + + I ++ + GWIPCLEF E
Sbjct: 59 YHTDLLHLPCYNTKNPCFFQSGRGFRNPHGIRFLTARWLRWFAACKRPPGWIPCLEFAEA 118
Query: 95 --GYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
YV E++ G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R
Sbjct: 119 DKAYVSNESTVRFGPVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRL 178
Query: 148 LAFNNQKQGQCMSFLIQKPTTT 169
+AF+N KQ Q M FL+Q+P +
Sbjct: 179 VAFDNVKQVQIMGFLVQRPKSA 200
>gi|18920396|gb|AAL82195.1|AF396697_1 s/s2 [Nicotiana benthamiana]
Length = 113
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 60/75 (80%)
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+RE+ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A++R + F+N +
Sbjct: 8 GFVYREHHSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVR 67
Query: 155 QGQCMSFLIQKPTTT 169
Q QC+SF+ KP T
Sbjct: 68 QVQCISFIASKPEAT 82
>gi|126657385|ref|ZP_01728544.1| ribulose bisphosphate carboxylase small subunit [Cyanothece sp.
CCY0110]
gi|126621372|gb|EAZ92084.1| ribulose bisphosphate carboxylase small subunit [Cyanothece sp.
CCY0110]
Length = 111
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I +++ Y+L +G IP +EF+E P + +WTM
Sbjct: 7 ERRYETLSYLPPLTDQQIVRQVQYVLDQGMIPGIEFEE--------DPQP---ETHFWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+FG + + Q+L E++EC+ YPNAYIR + F+N KQ Q MSF++ KP
Sbjct: 56 WKLPLFGASSAQQVLAEVRECRSEYPNAYIRVIGFDNIKQCQTMSFIVHKP 106
>gi|172038077|ref|YP_001804578.1| ribulose bisphosphate carboxylase small subunit [Cyanothece sp.
ATCC 51142]
gi|354556426|ref|ZP_08975721.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. ATCC 51472]
gi|171699531|gb|ACB52512.1| ribulose bisphosphate carboxylase small subunit [Cyanothece sp.
ATCC 51142]
gi|353551638|gb|EHC21039.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. ATCC 51472]
Length = 111
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 75/111 (67%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I +++ Y+L +G IP +EF+E + +P + +WTM
Sbjct: 7 ERRYETLSYLPPLTDQQIVRQVQYVLDQGMIPGVEFEE--------NPLP---ETHFWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+FG + + ++L E++EC+ YPNAYIR + F+N KQ Q MSF++ KP
Sbjct: 56 WKLPLFGASSAQEVLAEVRECRSEYPNAYIRVIGFDNIKQCQTMSFIVHKP 106
>gi|428217179|ref|YP_007101644.1| ribulose 1,5-bisphosphate carboxylase small subunit [Pseudanabaena
sp. PCC 7367]
gi|427988961|gb|AFY69216.1| ribulose 1,5-bisphosphate carboxylase small subunit [Pseudanabaena
sp. PCC 7367]
Length = 109
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 74/110 (67%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE LSYLP LSD I+K+I Y++ +G+ PC+EF+E + P Y YWTMW
Sbjct: 8 RKFETLSYLPPLSDAQISKQIQYVIDQGFFPCVEFNE--------TSNPEEY---YWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP+F N + ++L+E+Q C+ A+ N YIR +AF+N +Q Q SF++ KP
Sbjct: 57 KLPLFNANSAQEVLSEVQACRSAFSNCYIRVVAFDNIRQCQVTSFIVHKP 106
>gi|119508825|ref|ZP_01627977.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nodularia spumigena CCY9414]
gi|119466354|gb|EAW47239.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nodularia spumigena CCY9414]
Length = 111
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK++ Y+L +G+IP +EF+E+ E ++ YWTM
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQVQYILTQGYIPAIEFNEIS----EPTEF-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+FG + ++L+E+Q C+ Y N YIR + F+N KQ Q +SF++ KP+ +
Sbjct: 56 WKLPLFGAKSTQEVLSEVQSCRSQYSNCYIRVVGFDNIKQCQVLSFIVHKPSMS 109
>gi|414076613|ref|YP_006995931.1| ribulose-bisphosphate carboxylase small subunit [Anabaena sp. 90]
gi|413970029|gb|AFW94118.1| ribulose-bisphosphate carboxylase small subunit [Anabaena sp. 90]
Length = 109
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 75/112 (66%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK++ Y++ +G+IP +EF+E E +++ YWTM
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQVQYIITQGFIPAIEFNETS----EPTEL-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+FG + ++L+E+Q C+ Y N YIR + F+N KQ Q MSFL+ KP+
Sbjct: 56 WKLPLFGAKTTQEVLSEVQGCRSQYGNCYIRVVGFDNIKQCQVMSFLVHKPS 107
>gi|110224770|emb|CAL07985.1| ribulose-bisphosphate carboxylase [Platanus x acerifolia]
Length = 71
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
REN++ PGYYDGRYW MWKLPMFGC DS Q+L E++ECKK YPNA+IR + F+N++Q QC
Sbjct: 1 RENNRSPGYYDGRYWVMWKLPMFGCTDSPQVLRELEECKKTYPNAFIRIIGFDNKRQVQC 60
Query: 159 MSFLIQKPT 167
+SF+ KP
Sbjct: 61 ISFIAYKPA 69
>gi|17229018|ref|NP_485566.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nostoc sp. PCC 7120]
gi|132133|sp|P06514.1|RBS_ANASP RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|68111|pir||RKAIS ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
Anabaena sp
gi|142083|gb|AAA22025.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nostoc sp. PCC 7120]
gi|142085|gb|AAA22026.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nostoc sp. PCC 7120]
gi|142090|gb|AAA22030.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nostoc sp. PCC 7120]
gi|142106|gb|AAA22042.1| ribulose-1,5-bisphosphate carboxylase small subunit (rbcS)
[Anabaena sp.]
gi|17135346|dbj|BAB77892.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Nostoc sp. PCC 7120]
Length = 109
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 74/113 (65%), Gaps = 11/113 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D I K++ Y+L +G+IP +EF+EV E +++ YWT
Sbjct: 6 KERRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNEVS----EPTEL-------YWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+WKLP+FG S ++L E+Q C+ YP YIR + F+N KQ Q +SF++ KP+
Sbjct: 55 LWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKPS 107
>gi|427707246|ref|YP_007049623.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359751|gb|AFY42473.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 109
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 72/111 (64%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD I K++ Y+L +G+IP +EF+EV E ++ YWTM
Sbjct: 7 ERRYETLSYLPPLSDVQIEKQVQYILSQGYIPGVEFNEVS----EPTEF-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+FG S ++L E+Q C+ YP YIR + F+N KQ Q +SF++ KP
Sbjct: 56 WKLPLFGAKTSREVLAEVQSCRSQYPTHYIRVVGFDNIKQCQVLSFIVHKP 106
>gi|220908794|ref|YP_002484105.1| ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 7425]
gi|219865405|gb|ACL45744.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 7425]
Length = 114
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E SYLP LSD IA++I Y L +G+IP +EF+E +S YY WTMW
Sbjct: 8 RRYETFSYLPPLSDAQIARQIQYTLDQGYIPAVEFNE-------DSNAETYY----WTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
KLP+F ++LNE+Q+C+ Y +YIR +AF+N KQ Q MSF++ KP +
Sbjct: 57 KLPLFNATSPQEVLNEVQQCRSEYSGSYIRVVAFDNVKQCQVMSFIVHKPNAS 109
>gi|132151|sp|P27569.1|RBS_PROHO RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|45544|emb|CAA40633.1| ribulose-1,5-bisphosphate carboxylase /oxygenase [Prochlorothrix
hollandica]
Length = 109
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 15/113 (13%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR--YW 113
+++E LSYLP LSD IA++I+YM+++G+IP +EF+E D YW
Sbjct: 7 ERRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDS-------------DATTCYW 53
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
TMWKLP+F + ++L E++EC+ YPN YIR + F+N KQ Q +SF++ KP
Sbjct: 54 TMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106
>gi|427715657|ref|YP_007063651.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348093|gb|AFY30817.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 109
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 76/112 (67%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D IAK++ Y+L +G+IP +EF+E E +++ YWTM
Sbjct: 7 ERRYETLSYLPPLTDAQIAKQVQYILNQGYIPAIEFNETS----EPTEL-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+FG + ++L+E+Q C+ + N+YIR + F+N KQ Q +SFL+ KP+
Sbjct: 56 WKLPLFGAKSTQEVLSEVQGCRSQFNNSYIRVVGFDNIKQCQVLSFLVHKPS 107
>gi|425436068|ref|ZP_18816509.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9432]
gi|440752101|ref|ZP_20931304.1| ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa TAIHU98]
gi|389679301|emb|CCH91914.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9432]
gi|440176594|gb|ELP55867.1| ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa TAIHU98]
Length = 111
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
K++E LSYLP L+D IAK+I YM+ +G+IP +EF E P Y +WTM
Sbjct: 7 EKRYETLSYLPPLTDQQIAKQIQYMIDQGYIPAVEF--------EKDPKPADY---HWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+F + ++LNE++EC+ Y + YIR +AF+N KQ Q MSF++ KP
Sbjct: 56 WKLPLFSVSGPQEVLNEVRECRTEYSDCYIRVIAFDNIKQCQTMSFIVHKPNV 108
>gi|411117419|ref|ZP_11389906.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410713522|gb|EKQ71023.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 114
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 11/114 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E SYLP L+D IA++I Y++ +G+ PC+EF+E +S YY WTMW
Sbjct: 8 RRYETFSYLPPLTDAQIARQIQYVIDQGYHPCVEFNE-------DSNAETYY----WTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+F + ++LNE+Q+C+ Y N YIR +AF+N KQ Q MSF++ KP ++
Sbjct: 57 KLPLFNVSSPQEVLNEVQQCRSEYNNCYIRVVAFDNIKQCQVMSFIVHKPGASS 110
>gi|166367528|ref|YP_001659801.1| ribulose bisphosphate carboxylase small subunit [Microcystis
aeruginosa NIES-843]
gi|390440346|ref|ZP_10228684.1| Ribulose bisphosphate carboxylase small chain [Microcystis sp.
T1-4]
gi|422301878|ref|ZP_16389243.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9806]
gi|425440413|ref|ZP_18820715.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9717]
gi|425447611|ref|ZP_18827596.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9443]
gi|425451690|ref|ZP_18831510.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 7941]
gi|425453299|ref|ZP_18833057.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9807]
gi|425459243|ref|ZP_18838729.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9808]
gi|425463543|ref|ZP_18842873.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9809]
gi|425469278|ref|ZP_18848227.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9701]
gi|443649457|ref|ZP_21130243.1| ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa DIANCHI905]
gi|112821113|emb|CAJ43365.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Microcystis aeruginosa PCC 7806]
gi|159027946|emb|CAO87109.1| Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Microcystis aeruginosa PCC 7806]
gi|166089901|dbj|BAG04609.1| ribulose bisphosphate carboxylase small subunit [Microcystis
aeruginosa NIES-843]
gi|389719146|emb|CCH96975.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9717]
gi|389731786|emb|CCI04200.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9443]
gi|389766851|emb|CCI07591.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 7941]
gi|389789015|emb|CCI14969.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9806]
gi|389801455|emb|CCI19395.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9807]
gi|389823065|emb|CCI28996.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9808]
gi|389831556|emb|CCI25646.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9809]
gi|389836247|emb|CCI32810.1| Ribulose bisphosphate carboxylase small chain [Microcystis sp.
T1-4]
gi|389881869|emb|CCI37605.1| Ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa PCC 9701]
gi|443334939|gb|ELS49427.1| ribulose bisphosphate carboxylase small chain [Microcystis
aeruginosa DIANCHI905]
Length = 111
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
K++E LSYLP L+D IAK+I YM+ +G+IP +EF E P Y +WTM
Sbjct: 7 EKRYETLSYLPPLTDQQIAKQIQYMIDQGYIPAVEF--------EKDPKPADY---HWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F + ++LNE++EC+ Y + YIR +AF+N KQ Q MSF++ KP
Sbjct: 56 WKLPLFSVSGPQEVLNEVRECRTEYSDCYIRVIAFDNIKQCQTMSFIVHKP 106
>gi|254422428|ref|ZP_05036146.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
PCC 7335]
gi|196189917|gb|EDX84881.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
PCC 7335]
Length = 116
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 11/116 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LSYLP L+D I K+I+Y L+ G+IP +EF+E + P Y YWTMW
Sbjct: 8 RRYETLSYLPPLTDQQIEKQINYCLQMGYIPAVEFNE--------TSEPEAY---YWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTST 172
KLP+FG N++ +L+EIQ C+ Y N +IR + F+N KQ Q +SF++ KP + S+
Sbjct: 57 KLPLFGANNTRAVLDEIQACRSEYGNCFIRVVGFDNVKQCQAVSFIVHKPGSNNSS 112
>gi|428210198|ref|YP_007094551.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012119|gb|AFY90682.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 114
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++++E LSYLP L+D I++++ Y+L +G+IP +EF+E S P YWTM
Sbjct: 7 DRRYETLSYLPPLTDAQISRQVQYILSQGYIPAIEFNE--------SSEP---TECYWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+FG + ++LNE+Q C+ Y N YIR + F+N KQ Q +SFL+ KP ++
Sbjct: 56 WKLPLFGAGSTQEVLNEVQACRSQYSNCYIRIVGFDNVKQCQILSFLVHKPNSS 109
>gi|427728375|ref|YP_007074612.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364294|gb|AFY47015.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 109
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK++ Y+L +G+IP +EF+E E ++ YWTM
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQVQYILNQGYIPAIEFNETS----EPTEF-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+FG + ++L E+Q C+ Y N YIR + F+N KQ Q +SF++ KP+
Sbjct: 56 WKLPLFGAKSTQEVLGEVQACRSQYGNCYIRVVGFDNIKQCQVLSFIVHKPS 107
>gi|428227230|ref|YP_007111327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987131|gb|AFY68275.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 113
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 11/112 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
++FE LSYLP LSD IA+++ Y+L +G+ +EF+E + P YWTMW
Sbjct: 8 RRFETLSYLPPLSDAQIARQVQYILDQGYFAAVEFNE--------TSNP---TEVYWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KLP+F N ++LNE+Q+C+ YPN YIR + F+N KQ Q +SF++ KP +
Sbjct: 57 KLPLFSANSVQEVLNEVQQCRSEYPNCYIRVIGFDNIKQCQTLSFIVHKPNS 108
>gi|428200747|ref|YP_007079336.1| ribulose bisphosphate carboxylase small subunit [Pleurocapsa sp.
PCC 7327]
gi|427978179|gb|AFY75779.1| ribulose bisphosphate carboxylase small subunit [Pleurocapsa sp.
PCC 7327]
Length = 111
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP ++D IAK+I YML +G+IP +EF+E + P +WT+
Sbjct: 7 ERRYETLSYLPPMTDQQIAKQIQYMLDQGYIPAVEFEE--------NPQPS---DHHWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F ++LNE++EC+ Y N YIR + F+N KQ Q MSF++ KP ++
Sbjct: 56 WKLPLFSATSPQEVLNEVRECRAEYSNCYIRVIGFDNIKQCQTMSFIVHKPNSS 109
>gi|300866367|ref|ZP_07111067.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
sp. PCC 6506]
gi|300335636|emb|CBN56227.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
sp. PCC 6506]
Length = 111
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK++ Y+L +G+IP +EF+E + RYWTM
Sbjct: 7 ERRYETLSYLPPLSDSQIAKQLQYILDQGYIPGVEFNETSAA-----------EMRYWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+FG +I++EI C++ P YIR + F+N KQ Q +SF++ KP T
Sbjct: 56 WKLPLFGAKSVQEIMSEINACRQENPTCYIRVMGFDNVKQCQVLSFIVHKPNT 108
>gi|434391831|ref|YP_007126778.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263672|gb|AFZ29618.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 115
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 11/114 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LSYLP LSD I K+I Y+L +G+IP +EF+E S P + YWT+W
Sbjct: 8 RRYETLSYLPPLSDAQITKQIQYILNQGYIPAVEFNE--------SSEP---EQHYWTLW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+FG + ++L+E+Q C+ Y N YIR + F+N KQ Q +SF++ KP +
Sbjct: 57 KLPLFGARSTQEVLSEVQACRSEYGNCYIRVVGFDNVKQCQILSFIVHKPNQNS 110
>gi|86610010|ref|YP_478772.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558552|gb|ABD03509.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 110
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K++ Y+L +G+IP +EF+E S P RYWT+
Sbjct: 7 ERRYETLSYLPPLTDLQIIKQVQYILDQGYIPAIEFNE--------SSEPTV---RYWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+F ++L+E+Q C+ AYPN +IR + F+N KQ Q +SFL+ KP+
Sbjct: 56 WKLPLFSATSPQEVLSEVQACRSAYPNCFIRVVGFDNIKQCQVLSFLVYKPS 107
>gi|357460025|ref|XP_003600294.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
gi|355489342|gb|AES70545.1| Ribulose bisphosphate carboxylase small chain [Medicago truncatula]
Length = 356
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 55/72 (76%)
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+V+REN PGYYDGRYWTMWKLP+FG D+SQ+L E+ E AYPNA++R + F+N +
Sbjct: 282 GFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVR 341
Query: 155 QGQCMSFLIQKP 166
Q QC+SF+ P
Sbjct: 342 QVQCISFIAHTP 353
>gi|434404081|ref|YP_007146966.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258336|gb|AFZ24286.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 109
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 73/110 (66%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LSYLP LSD IAK+I Y+L +G+IP +EF+E E +++ YWTMW
Sbjct: 8 RRYETLSYLPPLSDAQIAKQIQYILNQGYIPAIEFNETS----EPTEL-------YWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP+FG + ++L E+Q C+ + N YIR + F+N KQ Q +SFL+ KP
Sbjct: 57 KLPLFGAKSTQEVLGEVQGCRSQFNNCYIRVVGFDNIKQCQVLSFLVHKP 106
>gi|186684319|ref|YP_001867515.1| ribulose bisphosphate carboxylase, small chain RbcS [Nostoc
punctiforme PCC 73102]
gi|186466771|gb|ACC82572.1| ribulose bisphosphate carboxylase, small chain RbcS [Nostoc
punctiforme PCC 73102]
Length = 109
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK+I Y+L +G+IP +EF+E E +++ YWTM
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQIQYILNQGYIPAIEFNETS----EPTEL-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+FG + ++L+E+Q C+ + +YIR + F+N KQ Q +SFL+ KP
Sbjct: 56 WKLPLFGAKSTQEVLSEVQGCRSQFNGSYIRVVGFDNIKQCQVLSFLVHKP 106
>gi|428320547|ref|YP_007118429.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244227|gb|AFZ10013.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 111
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D IAK++ Y+L +G+IP +EF E + YWT
Sbjct: 6 KERRYETLSYLPPLTDAQIAKQLQYILDQGYIPGVEFSESSAA-----------EMHYWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
+WKLP+FG +I+ EIQ C++ YP YIR + F+N KQ Q +SF++ KP T
Sbjct: 55 LWKLPLFGAKSLPEIMTEIQACRQEYPQCYIRVMGFDNVKQCQVLSFIVHKPNT 108
>gi|334118543|ref|ZP_08492632.1| Ribulose-bisphosphate carboxylase [Microcoleus vaginatus FGP-2]
gi|333459550|gb|EGK88163.1| Ribulose-bisphosphate carboxylase [Microcoleus vaginatus FGP-2]
Length = 111
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D IAK++ Y+L +G+IP +EF+E + RYWT+
Sbjct: 7 ERRYETLSYLPPLTDAQIAKQLQYILDQGYIPGVEFNETSAA-----------EMRYWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+FG +I+ E+Q C++ P+ YIR + F+N KQ Q +SF++ KP T
Sbjct: 56 WKLPLFGARSVQEIMTEVQACRQDNPSCYIRVMGFDNVKQCQVLSFIVHKPNT 108
>gi|75910109|ref|YP_324405.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703834|gb|ABA23510.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 109
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D I K++ Y+L +G+IP +EF+E E ++ YWT
Sbjct: 6 KERRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNEAS----EPTEF-------YWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+WKLP+FG S ++L E+Q C+ YP YIR + F+N KQ Q +SF++ KP+
Sbjct: 55 LWKLPLFGAKTSREVLGEVQACRSQYPGHYIRVVGFDNIKQCQVLSFIVHKPS 107
>gi|218438348|ref|YP_002376677.1| ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 7424]
gi|218171076|gb|ACK69809.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 7424]
Length = 111
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K+I YML +G+IP +EF+E P +WT+
Sbjct: 7 ERRYETLSYLPPLTDQQIVKQIQYMLDQGFIPAVEFEE--------DPKPS---DHHWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+F +L E++EC+ YPN YIR + F+N KQ Q MSF++ KP T
Sbjct: 56 WKLPLFSAATPQDVLAEVRECRSEYPNYYIRVIGFDNIKQCQTMSFIVHKPNT 108
>gi|307152750|ref|YP_003888134.1| ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 7822]
gi|306982978|gb|ADN14859.1| Ribulose-bisphosphate carboxylase [Cyanothece sp. PCC 7822]
Length = 111
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K+I Y+L +G+IP +EF+E N K +Y WT+
Sbjct: 7 ERRYETLSYLPPLTDQQIVKQIQYILDQGFIPAVEFEE-------NPKPTDHY----WTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+F + +L E++EC+ YP+ YIR + F+N KQ Q MSF++ KP T
Sbjct: 56 WKLPLFSASTPQDVLAEVRECRSEYPSYYIRVIGFDNIKQCQTMSFIVHKPNT 108
>gi|428211460|ref|YP_007084604.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|427999841|gb|AFY80684.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 111
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD I K+I Y++ +G+IP +EF+E + P Y YWTM
Sbjct: 7 ERRYETLSYLPPLSDAQIGKQIQYIIDQGYIPAIEFNE--------TSDPTVY---YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F ++++E+Q C+ YP YIR + F+N KQ Q +SF+I KP T+
Sbjct: 56 WKLPLFNARSVQEVMSEVQGCRSEYPACYIRVVGFDNIKQCQVLSFIIHKPNTS 109
>gi|440679761|ref|YP_007154556.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428676880|gb|AFZ55646.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 109
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 75/112 (66%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK++ Y+L +G+IP +EF+E E +++ +WTM
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQVQYILSQGYIPAIEFNETS----EPTEL-------FWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+FG + ++L+E+Q C+ + N Y+R + F+N KQ Q +SF++ KP+
Sbjct: 56 WKLPLFGAKTTQEVLSEVQGCRSQFGNCYVRVVGFDNIKQCQVLSFIVHKPS 107
>gi|755804|emb|CAA25058.1| ribulosebisphosphate carboxylase [Triticum aestivum]
Length = 163
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 3/153 (1%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS +++
Sbjct: 4 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEAL 61
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
K++DY+++ W+PCLEF +VG++ RE++ P E+
Sbjct: 62 LKQVDYLIRSKWVPCLEFSKVGFIFREHNASPVXXXXXXXXXXXXXXXXXXXXXXXXXEV 121
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+E KK YP+AY+R + F+N +Q QC+SF+ KP
Sbjct: 122 EEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 154
>gi|428769035|ref|YP_007160825.1| ribulose 1,5-bisphosphate carboxylase small subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683314|gb|AFZ52781.1| ribulose 1,5-bisphosphate carboxylase small subunit [Cyanobacterium
aponinum PCC 10605]
Length = 111
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K++ Y+L +G+IP +EF E P +WT+
Sbjct: 7 ERRYETLSYLPPLTDQQIVKQVQYLLDQGFIPAVEF--------EKDPQPK---DHHWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F + + ++LNE++ECK Y ++YIR + F+N KQ Q MSF++ KP +T
Sbjct: 56 WKLPLFNASSAQEVLNEVRECKAQYSDSYIRVIGFDNIKQCQTMSFIVYKPNST 109
>gi|2126548|pir||I39687 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
Anabaena sp
gi|520441|gb|AAA63604.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Anabaena sp. CA]
Length = 109
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K++ Y+L +G+IP +EF+E E ++ YWTM
Sbjct: 7 ERRYETLSYLPPLTDAQIEKQVQYILNQGYIPAIEFNETS----EPTEF-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+F + ++L E+Q C+ YP YIR + F+N KQ Q +SF++ KP+
Sbjct: 56 WKLPLFNAQSTREVLGEVQACRSQYPTHYIRVVGFDNIKQCQILSFIVHKPS 107
>gi|428307648|ref|YP_007144473.1| ribulose-bisphosphate carboxylase [Crinalium epipsammum PCC 9333]
gi|428249183|gb|AFZ14963.1| Ribulose-bisphosphate carboxylase [Crinalium epipsammum PCC 9333]
Length = 111
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK+I YM+ +G+IP +EF E S P + YWT+
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQIQYMIDQGFIPGVEFSE--------SSAP---EQHYWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F +++LNE++ C+ Y + +IR + F+N KQ Q +SF++ KPT +
Sbjct: 56 WKLPLFNAGSVNEVLNEVKACRSEYSSNFIRVVGFDNVKQCQVLSFIVHKPTAS 109
>gi|37521727|ref|NP_925104.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Gloeobacter violaceus PCC 7421]
gi|35212725|dbj|BAC90099.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Gloeobacter violaceus PCC 7421]
Length = 106
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
K +E +SYLP L+D IAK+I YML KG+IPC+EF+E E + + YWTMW
Sbjct: 8 KFYETMSYLPPLTDAEIAKQIQYMLDKGYIPCVEFNETS----EPTMV-------YWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP+F ++L+E+ C+ +YP +IR + F+N +Q Q MSF++ KP
Sbjct: 57 KLPLFSVRSPQEVLSEVNACRSSYPGCFIRVIGFDNIRQCQTMSFIVYKP 106
>gi|434396905|ref|YP_007130909.1| ribulose 1,5-bisphosphate carboxylase small subunit [Stanieria
cyanosphaera PCC 7437]
gi|428268002|gb|AFZ33943.1| ribulose 1,5-bisphosphate carboxylase small subunit [Stanieria
cyanosphaera PCC 7437]
Length = 111
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D IAK+IDYML++G+IP +EF E P + +WT+
Sbjct: 7 ERRYETLSYLPPLTDQQIAKQIDYMLEQGFIPGVEF--------EKEPTPELH---HWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F ++ +LNE++EC+ Y + YIR + F+N KQ Q +SF++ KP ++
Sbjct: 56 WKLPLFDARNAQDVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKPNSS 109
>gi|428771963|ref|YP_007163751.1| ribulose 1,5-bisphosphate carboxylase small subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686242|gb|AFZ46102.1| ribulose 1,5-bisphosphate carboxylase small subunit [Cyanobacterium
stanieri PCC 7202]
Length = 111
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LSYLP L+D I K++ Y+L +G+IP +EF E P + +WT+W
Sbjct: 8 RRYETLSYLPPLTDQQIVKQVQYLLDQGFIPAVEF--------EKDPQP---NDHHWTLW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
KLP+F + +LNE++ECK Y +++IR + F+N KQ Q MSF++ KP TT
Sbjct: 57 KLPLFNAFSAQDVLNEVRECKGQYSDSFIRVIGFDNLKQCQTMSFIVHKPNTT 109
>gi|298491111|ref|YP_003721288.1| ribulose-bisphosphate carboxylase ['Nostoc azollae' 0708]
gi|298233029|gb|ADI64165.1| Ribulose-bisphosphate carboxylase ['Nostoc azollae' 0708]
Length = 109
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD IAK++ Y+L +G+IP +EF+E E +++ +WTM
Sbjct: 7 ERRYETLSYLPPLSDAQIAKQVQYILNQGYIPAVEFNETS----EPTEL-------FWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+F + ++L E+Q C+ Y N Y+R + F+N KQ Q +SF++ KP+
Sbjct: 56 WKLPLFSAKTTQEVLGEVQACRSQYGNCYVRVVGFDNIKQCQVLSFIVHKPS 107
>gi|354567924|ref|ZP_08987091.1| Ribulose-bisphosphate carboxylase [Fischerella sp. JSC-11]
gi|353541598|gb|EHC11065.1| Ribulose-bisphosphate carboxylase [Fischerella sp. JSC-11]
Length = 109
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I+K+I Y+L +G+IP +EF+E NS+ YY WTM
Sbjct: 7 ERRYETLSYLPPLTDAQISKQIQYILNQGYIPAIEFNE-------NSEPTEYY----WTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F + ++L+E+Q C+ Y N +IR + F+N KQ Q +SF++ KP
Sbjct: 56 WKLPLFSARSTQEVLSEVQACRSQYGNCFIRVVGFDNIKQCQILSFIVHKP 106
>gi|356524597|ref|XP_003530915.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase
small chain 1, chloroplastic-like [Glycine max]
Length = 161
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 23/146 (15%)
Query: 1 MSASIFTAPVAGS--------GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWN 52
M++S+ ++P + + GLK S A PV+ + + SN + +C + W
Sbjct: 1 MASSMMSSPAVTTVNRGSMVAPFTGLK--SMAGFPVRKTNYDITSIASNTGRVQCYQVWP 58
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
PI KKFE LSYLP L+ + + KE GWIPCLEF+ G+V+REN + PGY+
Sbjct: 59 PIGKKKFETLSYLPPLTREQLLKE------DGWIPCLEFEVPKGFVYRENHRSPGYH--- 109
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECK 137
WKLPMFGC DS+Q+L E+ E K
Sbjct: 110 ---XWKLPMFGCTDSAQVLKEVDEAK 132
>gi|427419416|ref|ZP_18909599.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425762129|gb|EKV02982.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 114
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 76/116 (65%), Gaps = 11/116 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I ++I Y+L++G+ P +EF+E +S YY WTM
Sbjct: 7 ERRYETLSYLPPLTDAQIERQIQYVLEQGYFPAIEFNE-------DSDPTAYY----WTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
WKLP+F + + ++L+E+Q C+ YP+ ++R + F+N KQ Q +SF++ KP + +S
Sbjct: 56 WKLPLFNASSTREVLDEVQACRSEYPDCFVRVVGFDNVKQCQILSFIVHKPGSGSS 111
>gi|443315673|ref|ZP_21045152.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784717|gb|ELR94578.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 115
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 11/117 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I ++I Y+L G+IP +EF+E + P Y YWTM
Sbjct: 7 ERRYETLSYLPPLTDAQIERQIAYILNMGYIPAVEFNE--------TSDPEIY---YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTST 172
WKLP+F +S++L+E+Q C+ Y N ++R + F+N KQ Q +SF++ KP T+ +
Sbjct: 56 WKLPLFKATSTSEVLSEVQACRSEYSNCFVRVVGFDNVKQCQILSFIVHKPGATSGS 112
>gi|388253|emb|CAA37905.1| ribulose bisphosphate carboxylase [Trifolium repens]
Length = 75
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK 154
G+VHR+ + PGYYDGRYWTMW+LP+FG D++Q+L E+ ECK YP A+IR + F+N +
Sbjct: 1 GFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVR 60
Query: 155 QGQCMSFLIQKP 166
Q QC+SF+ P
Sbjct: 61 QVQCISFIASTP 72
>gi|443476300|ref|ZP_21066213.1| ribulose 1,5-bisphosphate carboxylase small subunit [Pseudanabaena
biceps PCC 7429]
gi|443018748|gb|ELS32948.1| ribulose 1,5-bisphosphate carboxylase small subunit [Pseudanabaena
biceps PCC 7429]
Length = 111
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD I ++I+Y LK+G+ P +EF+E P + YWT+
Sbjct: 7 ERRYETLSYLPPLSDAQITRQIEYTLKQGFYPAIEFNE--------DSDPAIH---YWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+F ++L+E+Q C+ +YP ++IR +AF+N KQ Q SF++ KP +
Sbjct: 56 WKLPLFNARTPQEVLSEVQACRSSYPGSFIRVVAFDNIKQCQVQSFIVHKPNS 108
>gi|86605882|ref|YP_474645.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
JA-3-3Ab]
gi|86554424|gb|ABC99382.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
JA-3-3Ab]
Length = 110
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E SYLP ++D I K++ Y+L +G+IP +EF+E S P YWT+
Sbjct: 7 ERRYETFSYLPPMTDLQILKQVQYILDQGYIPAIEFNE--------SSQPT---DHYWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+F ++L E+Q C+ AYPN +IR + F+N KQ Q +SFL+ KP+
Sbjct: 56 WKLPLFSATSPQEVLTEVQACRSAYPNCFIRVVGFDNIKQCQVLSFLVYKPS 107
>gi|170078402|ref|YP_001735040.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
PCC 7002]
gi|3914609|sp|Q44178.1|RBS_SYNP2 RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|485796|dbj|BAA03078.1| ribulose-1,5,-bisphosphate carboxylase oxygenase small subunit
[Synechococcus sp. PCC 7002]
gi|169886071|gb|ACA99784.1| Ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
PCC 7002]
Length = 111
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
K++E LSYLP LSD IA+++ YM+ +G+IP +EF E P + +WT+
Sbjct: 7 EKRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--------EKDPTP---ELHHWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F + + ++LNE++EC+ Y + YIR + F+N KQ Q +SF++ KP T
Sbjct: 56 WKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKPNQT 109
>gi|282896971|ref|ZP_06304975.1| Ribulose bisphosphate carboxylase, small chain [Raphidiopsis
brookii D9]
gi|282901106|ref|ZP_06309038.1| Ribulose bisphosphate carboxylase, small chain [Cylindrospermopsis
raciborskii CS-505]
gi|281194005|gb|EFA68970.1| Ribulose bisphosphate carboxylase, small chain [Cylindrospermopsis
raciborskii CS-505]
gi|281198144|gb|EFA73036.1| Ribulose bisphosphate carboxylase, small chain [Raphidiopsis
brookii D9]
Length = 109
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD I K++ Y+L +G+IP +EF+E E ++ +WT+
Sbjct: 7 ERRYETLSYLPPLSDAQIEKQVQYILSQGYIPAVEFNETS----EPTEF-------FWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLP+F + ++L E+Q C+ Y N YIR + F+N KQ Q +SF++ KPT
Sbjct: 56 WKLPLFNAKTTREVLGEVQSCRSQYSNCYIRVVGFDNIKQCQVLSFIVHKPT 107
>gi|16331394|ref|NP_442122.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
gi|383323135|ref|YP_005383988.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|383326304|ref|YP_005387157.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
gi|383492188|ref|YP_005409864.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|384437456|ref|YP_005652180.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
gi|451815547|ref|YP_007451999.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
gi|1710044|sp|P54206.1|RBS_SYNY3 RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|439292|emb|CAA46774.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
gi|1001565|dbj|BAA10192.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
gi|339274488|dbj|BAK50975.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
gi|359272454|dbj|BAL29973.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|359275624|dbj|BAL33142.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|359278794|dbj|BAL36311.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
gi|407961224|dbj|BAM54464.1| ribulose bisphosphate carboxylase small subunit [Bacillus subtilis
BEST7613]
gi|451781516|gb|AGF52485.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 6803]
Length = 113
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LSYLP L+D IAK+++++L +G+IP +EF+E P + +WTMW
Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEE--------DPQP---ETHFWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP FG ++++L E++EC+ PN YIR + F+N KQ Q +SF++ KP
Sbjct: 57 KLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106
>gi|56750138|ref|YP_170839.1| ribulose bisphosphate carboxylase small subunit [Synechococcus
elongatus PCC 6301]
gi|81300236|ref|YP_400444.1| ribulose 1,5-bisphosphate carboxylase small subunit [Synechococcus
elongatus PCC 7942]
gi|132158|sp|P04716.3|RBS_SYNP6 RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|38928|emb|CAA26973.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|56685097|dbj|BAD78319.1| ribulose bisphosphate carboxylase small subunit [Synechococcus
elongatus PCC 6301]
gi|81169117|gb|ABB57457.1| ribulose 1,5-bisphosphate carboxylase small subunit [Synechococcus
elongatus PCC 7942]
Length = 111
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE SYLP LSD IA +I+YM+++G+ P +EF+E H + YWTM
Sbjct: 9 ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTM 57
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F C Q+L+E++EC+ Y + YIR F+N KQ Q +SF++ +P
Sbjct: 58 WKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108
>gi|356566515|ref|XP_003551476.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase
small chain, chloroplastic-like [Glycine max]
Length = 160
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 24/146 (16%)
Query: 1 MSASIFTAPVAGS--------GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWN 52
M++S+ ++P + + GLK S A PV+ + + SN + +C+K W
Sbjct: 1 MASSMMSSPAVTTVNRGSMVAPFTGLK--SMAGFPVRKTNYDITXITSNTGRLQCIKVW- 57
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
P KKFE LSYLP L+ + + KE GWIPCLEFD G+V+REN + PGYY
Sbjct: 58 PQIGKKFETLSYLPPLTREQLLKE------DGWIPCLEFDVPKGFVYRENHRSPGYY--- 108
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECK 137
WKLPMFGC DS+Q+L E+ E K
Sbjct: 109 ---XWKLPMFGCTDSAQVLKEVHEAK 131
>gi|443325036|ref|ZP_21053751.1| ribulose bisphosphate carboxylase small subunit [Xenococcus sp. PCC
7305]
gi|442795370|gb|ELS04742.1| ribulose bisphosphate carboxylase small subunit [Xenococcus sp. PCC
7305]
Length = 111
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 11/112 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D I+K+ID+ML++G+IP +EF E P + +WT
Sbjct: 6 KERRYETLSYLPPLTDQQISKQIDFMLEQGYIPGIEF--------EKDPTPELH---HWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+WKLP+F C + +L E++EC+ Y + YIR + F+N +Q Q +SF++ KP
Sbjct: 55 LWKLPLFSCRSAQDVLAEVRECRSEYSDCYIRVVGFDNLRQCQTVSFIVYKP 106
>gi|356554037|ref|XP_003545356.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase
small chain, chloroplastic-like [Glycine max]
Length = 161
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 23/146 (15%)
Query: 1 MSASIFTAPVAGS--------GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWN 52
M++S+ ++P + + GLK S A PV+ + + SN + +C+K W
Sbjct: 1 MASSMMSSPAVTTVNRGSMVAPFSGLK--SMAGFPVRKTKYDITSIASNTGRVQCIKVWP 58
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
I KKFE SYLP L+ + + KE GWIPCLEF+ G+V+REN + PGYY
Sbjct: 59 RIGKKKFETPSYLPPLTREQLLKE------DGWIPCLEFEVPKGFVYRENHRSPGYY--- 109
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECK 137
WKLPMFGC DS+Q+L E+ E K
Sbjct: 110 ---XWKLPMFGCTDSAQVLKEVHEAK 132
>gi|428299656|ref|YP_007137962.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236200|gb|AFZ01990.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 113
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 71/111 (63%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K++ Y+L +G+IP +EF+E E ++ YWTM
Sbjct: 7 ERRYETLSYLPPLTDVQITKQVQYILDQGYIPGIEFNETS----EPTEC-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F + ++L E+Q+C+ Y N YIR + F+N KQ Q +SF++ KP
Sbjct: 56 WKLPLFNSRTTQEVLGEVQQCRSQYANHYIRVVGFDNVKQCQILSFIVHKP 106
>gi|428780001|ref|YP_007171787.1| ribulose bisphosphate carboxylase small subunit [Dactylococcopsis
salina PCC 8305]
gi|428694280|gb|AFZ50430.1| ribulose bisphosphate carboxylase small subunit [Dactylococcopsis
salina PCC 8305]
Length = 128
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 11/108 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
+E LSYLP L+D IAK+I YML +G+IP +EF+E S P +WT+WKL
Sbjct: 27 YETLSYLPPLTDQQIAKQIQYMLDQGFIPAIEFEE--------SPKP---QDHHWTLWKL 75
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
P+F + +LNE++EC+ Y N YIR + F+N +Q Q +SF++ KP
Sbjct: 76 PLFDASSPQDVLNEVRECRSEYSNCYIRVVGFDNIRQCQMVSFIVYKP 123
>gi|115488236|ref|NP_001066605.1| Os12g0291200 [Oryza sativa Japonica Group]
gi|113649112|dbj|BAF29624.1| Os12g0291200 [Oryza sativa Japonica Group]
gi|125579067|gb|EAZ20213.1| hypothetical protein OsJ_35812 [Oryza sativa Japonica Group]
Length = 123
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 77/149 (51%), Gaps = 43/149 (28%)
Query: 15 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
+ GLK T A LPV + S ++NG + +CM+ W KKFE LS
Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGDITNGGRIKCMQVWPVDGKKKFETLS---------- 63
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEI 133
PGYYDGRYWT+WKLPMFGC+D+SQ++ E+
Sbjct: 64 ------------------------------SPGYYDGRYWTIWKLPMFGCSDNSQVIKEL 93
Query: 134 QECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
+E KKAYP+A+I + F+N + QC+SF+
Sbjct: 94 EEAKKAYPDAFIHIVGFDNVRHVQCISFI 122
>gi|332710404|ref|ZP_08430351.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350735|gb|EGJ30328.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 115
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 11/116 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD I ++++Y+L +G+IP +EF+E S P Y YWT+
Sbjct: 7 ERRYETLSYLPPLSDAQIMRQVEYILAEGYIPAIEFNE--------SSEPEIY---YWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171
WKLP+F +L E+ EC+ Y + YIR + F+N KQ Q +SF+I KP S
Sbjct: 56 WKLPLFKATSPKDVLAEVDECRSEYRDCYIRVVGFDNVKQCQVLSFIIHKPNEGVS 111
>gi|428310572|ref|YP_007121549.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252184|gb|AFZ18143.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 114
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 11/113 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE LSYLP L+D I K++ Y+L +G+IP +EF + NS+ P ++ YWT+
Sbjct: 7 ERRFETLSYLPPLTDSQIVKQVQYILDQGYIPAVEFSD-------NSE-PEHH---YWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
WKLP+F + +++ E+ C+ Y ++YIR + F+N KQ Q +SF+I KP T
Sbjct: 56 WKLPLFKARSTQEVMAEVDACRSDYRDSYIRVVGFDNVKQCQVLSFIIHKPNT 108
>gi|168020432|ref|XP_001762747.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686155|gb|EDQ72546.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 71
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 52/70 (74%)
Query: 97 VHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQG 156
V R N+ PGYYDGRYWTMWKLPMFGC DS+Q+L EI+ECK +P Y+R L F+N KQ
Sbjct: 1 VSRVNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKTTFPGCYVRVLGFDNVKQV 60
Query: 157 QCMSFLIQKP 166
Q FL+ +P
Sbjct: 61 QICGFLVARP 70
>gi|1065010|pdb|1RSC|M Chain M, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879974|pdb|1RSC|I Chain I, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879976|pdb|1RSC|N Chain N, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879978|pdb|1RSC|J Chain J, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879980|pdb|1RSC|O Chain O, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879982|pdb|1RSC|K Chain K, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879984|pdb|1RSC|P Chain P, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
gi|157879986|pdb|1RSC|L Chain L, Structure Of An Effector Induced Inactivated State Of
Ribulose Bisphosphate Carboxylase(Slash)oxygenase: The
Binary Complex Between Enzyme And Xylulose Bisphosphate
Length = 111
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE SYLP LSD IA +I+YM+++G+ P +EF+E H + YWTM
Sbjct: 9 ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTM 57
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F C Q+L+E++EC+ Y + YIR F+N K+ Q +SF++ +P
Sbjct: 58 WKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRP 108
>gi|126165883|ref|NP_043239.2| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cyanophora paradoxa]
Length = 102
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+KFE SYLP L+D IA+++ Y L G+ P +EF G + WT+
Sbjct: 2 ERKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFTGKA-----------EDLVWTL 50
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+FG ++L+EIQ CK+ +PNAYIR +AF++ +Q Q + FL+ KP
Sbjct: 51 WKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 101
>gi|132140|sp|P18062.1|RBS_CYAPA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|336643|gb|AAA31702.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cyanophora paradoxa]
gi|1016183|gb|AAA81270.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Cyanophora paradoxa]
Length = 106
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+KFE SYLP L+D IA+++ Y L G+ P +EF G + WT+
Sbjct: 6 ERKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFTGKA-----------EDLVWTL 54
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+FG ++L+EIQ CK+ +PNAYIR +AF++ +Q Q + FL+ KP
Sbjct: 55 WKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105
>gi|443313469|ref|ZP_21043080.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776412|gb|ELR86694.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 107
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE LSYLP LSD I ++I Y+L +G+ P +EF+E + +++ YWTM
Sbjct: 7 ERRFETLSYLPPLSDAQITRQIQYILTQGYFPAIEFNETS----DPTEL-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F ++L+E++ C+ Y N YIR + F+N KQ Q +SF++ KP
Sbjct: 56 WKLPLFNARTPEEVLSEVRACRSDYSNCYIRVVGFDNVKQCQILSFIVHKP 106
>gi|169218|gb|AAA33717.1| ribulose 1,5-bisphosphate carboxylase, partial [Petunia x hybrida]
Length = 68
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 105 PGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQ 164
PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+I + F+N +Q QC+SF+
Sbjct: 4 PGYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWISIIGFDNVRQVQCISFIAY 63
Query: 165 KP 166
KP
Sbjct: 64 KP 65
>gi|51475155|gb|AAU04572.1| ribulose-1,5-bisphosphate carboxylase small subunit [Lolium
perenne]
Length = 65
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
LSYLP LS +++ K+ID++++ W+PCLEF +VG++ RE PGYYDGRYWTMWKLPMF
Sbjct: 1 LSYLPPLSAEALLKQIDFLIRSKWVPCLEFSKVGFIFREFGSTPGYYDGRYWTMWKLPMF 60
Query: 122 GCNDS 126
GC D+
Sbjct: 61 GCTDA 65
>gi|576254|pdb|1RBL|M Chain M, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879916|pdb|1RBL|I Chain I, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879918|pdb|1RBL|N Chain N, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879920|pdb|1RBL|J Chain J, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879922|pdb|1RBL|O Chain O, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879924|pdb|1RBL|K Chain K, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879926|pdb|1RBL|P Chain P, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
gi|157879928|pdb|1RBL|L Chain L, Structure Determination And Refinement Of Ribulose 1,5
Bisphosphate Carboxylase(Slash)oxygenase From
Synechococcus Pcc6301
Length = 109
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE SYLP LSD IA +I+YM+++G+ P +EF+E H + YWTM
Sbjct: 8 ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTM 56
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F C Q+L+E++EC+ Y + YIR F+N K+ Q SF++ +P
Sbjct: 57 WKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIVHRP 107
>gi|427722182|ref|YP_007069459.1| ribulose 1,5-bisphosphate carboxylase small subunit [Leptolyngbya
sp. PCC 7376]
gi|427353902|gb|AFY36625.1| ribulose 1,5-bisphosphate carboxylase small subunit [Leptolyngbya
sp. PCC 7376]
Length = 111
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
K++E LSYLP LSD I++++ +M+ +G+IP +EF E P D +WT+
Sbjct: 7 EKRYETLSYLPPLSDQQISRQVQWMIDQGFIPGVEF--------EKDPAP---DLHHWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+F + +LNE++EC+ Y + YIR + F+N KQ Q +SF++ KP T
Sbjct: 56 WKLPLFSATSAQDVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKPNQT 109
>gi|428778077|ref|YP_007169864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Halothece sp.
PCC 7418]
gi|428692356|gb|AFZ45650.1| ribulose 1,5-bisphosphate carboxylase small subunit [Halothece sp.
PCC 7418]
Length = 111
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 11/109 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
+E LSYLP L+D IAK+I YML + +IP +EF+E S P + +WT+WK
Sbjct: 9 HYETLSYLPPLTDQQIAKQIQYMLDQDFIPAVEFEE--------SPSP---EDHHWTLWK 57
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
LP+F +LNE++EC+ Y N YIR + F+N +Q Q +SF++ KP
Sbjct: 58 LPLFDATSPQDVLNEVRECRSEYSNCYIRVVGFDNIRQCQMVSFIVYKP 106
>gi|427736924|ref|YP_007056468.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371965|gb|AFY55921.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 113
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I ++I Y+L +G+ P +EF+E E ++M YWTM
Sbjct: 7 ERRYETLSYLPPLNDAQITRQIQYILDQGYFPAIEFNETS----EPTEM-------YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F ++L E+Q C+ +P +IR + F+N KQ Q +SF++ KP
Sbjct: 56 WKLPLFNARSPQEVLAEVQGCRSQFPTCFIRVVGFDNVKQCQILSFIVHKP 106
>gi|67923334|ref|ZP_00516816.1| Ribulose-bisphosphate carboxylase [Crocosphaera watsonii WH 8501]
gi|416397122|ref|ZP_11686569.1| Ribulose bisphosphate carboxylase small chain [Crocosphaera
watsonii WH 0003]
gi|67854806|gb|EAM50083.1| Ribulose-bisphosphate carboxylase [Crocosphaera watsonii WH 8501]
gi|357262831|gb|EHJ11913.1| Ribulose bisphosphate carboxylase small chain [Crocosphaera
watsonii WH 0003]
Length = 111
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E LSYLP L+D I ++ +L +G IP +EF+E P + +WTMW
Sbjct: 8 RRYETLSYLPPLTDQQILLQVQNVLDQGMIPGVEFEE--------DPSPTTH---FWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP+F + ++L E++EC+ YPNAYIR + F+N KQ Q MSF++ KP
Sbjct: 57 KLPLFNAVSAQEVLAEVRECRSEYPNAYIRVIGFDNIKQCQTMSFIVHKP 106
>gi|254409787|ref|ZP_05023568.1| ribulose bisphosphate carboxylase, small subunit [Coleofasciculus
chthonoplastes PCC 7420]
gi|196183784|gb|EDX78767.1| ribulose bisphosphate carboxylase, small subunit [Coleofasciculus
chthonoplastes PCC 7420]
Length = 116
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP LSD I ++I+Y+L +G+IP +EF E E ++ YWTM
Sbjct: 7 ERRYETLSYLPPLSDQQIVRQIEYILDQGYIPAIEFSETS----EPTQ-------HYWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F +++ E+ C+ Y + YIR + F+N KQ Q +SF+I KP
Sbjct: 56 WKLPLFNATSPKEVMAEVDACRSDYRDNYIRVVGFDNIKQCQVLSFIIYKP 106
>gi|209523849|ref|ZP_03272402.1| Ribulose-bisphosphate carboxylase [Arthrospira maxima CS-328]
gi|376005390|ref|ZP_09782904.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Arthrospira sp. PCC 8005]
gi|423065258|ref|ZP_17054048.1| ribulose-bisphosphate carboxylase [Arthrospira platensis C1]
gi|209495881|gb|EDZ96183.1| Ribulose-bisphosphate carboxylase [Arthrospira maxima CS-328]
gi|375326317|emb|CCE18657.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Arthrospira sp. PCC 8005]
gi|406713168|gb|EKD08340.1| ribulose-bisphosphate carboxylase [Arthrospira platensis C1]
Length = 111
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 11/113 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D K++ Y+L++G+I +EF E S P + YWT
Sbjct: 6 KERRYETLSYLPPLTDAQTQKQLQYILEQGFIAGVEFSE--------SSAP---EQHYWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+WKLP+F +++ EI EC++ YP +IR + F+N KQ Q +SF++ +PT
Sbjct: 55 LWKLPLFNATSVREVMAEIDECRREYPKCFIRVMGFDNVKQCQVLSFIVHRPT 107
>gi|30249872|ref|NP_841942.1| ribulose bisphosphate carboxylase, small chain [Nitrosomonas
europaea ATCC 19718]
gi|30180909|emb|CAD85831.1| Ribulose bisphosphate carboxylase, small chain [Nitrosomonas
europaea ATCC 19718]
Length = 118
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE SYLPSL D I K+++Y++KKGW P +E E P + YW MW
Sbjct: 17 RKFETFSYLPSLDQDQIRKQVEYIVKKGWNPAVEHTE-----------PEFLMSNYWYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
KLPMFG D +IL E + C KA PN ++R + +NN Q Q + +I + T
Sbjct: 66 KLPMFGETDVDRILAEAEACHKANPNNHVRLIGYNNFNQSQGTAMVIYRGKTV 118
>gi|149392361|gb|ABR26002.1| ribulose bisphosphate carboxylase small chain c [Oryza sativa
Indica Group]
Length = 73
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 53/64 (82%)
Query: 103 KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
+ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+
Sbjct: 1 RSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFI 60
Query: 163 IQKP 166
KP
Sbjct: 61 AYKP 64
>gi|409994030|ref|ZP_11277152.1| ribulose-bisphosphate carboxylase [Arthrospira platensis str.
Paraca]
gi|291569658|dbj|BAI91930.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Arthrospira platensis NIES-39]
gi|409935104|gb|EKN76646.1| ribulose-bisphosphate carboxylase [Arthrospira platensis str.
Paraca]
Length = 111
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 11/113 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D K++ Y+L++G+I +EF E S P + YWT
Sbjct: 6 KERRYETLSYLPPLTDAQTQKQLQYILEQGFIAGVEFSE--------SSAP---EQHYWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
+WKLP+F +++ EI EC++ YP +IR + F+N KQ Q +SF++ +PT
Sbjct: 55 LWKLPLFNATTVREVMAEIDECRREYPKCFIRVMGFDNVKQCQVLSFIVHRPT 107
>gi|119489314|ref|ZP_01622121.1| Ribulose bisphosphate carboxylase, small chain [Lyngbya sp. PCC
8106]
gi|119454788|gb|EAW35933.1| Ribulose bisphosphate carboxylase, small chain [Lyngbya sp. PCC
8106]
Length = 114
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 15/112 (13%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGY--VHRENSKMPGYYDGRYW 113
+++E LSYLP L+D I K+I YML +G+IP +EF+E VH YW
Sbjct: 7 ERRYETLSYLPPLTDAQIDKQIQYMLSQGFIPAVEFNETAEPEVH-------------YW 53
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
T+WKLP+F ++ EIQ C++ YP +IR F+N KQ Q +SF+I +
Sbjct: 54 TLWKLPLFNATTVRDVMMEIQACRQEYPKCFIRVAGFDNVKQCQVLSFIIHR 105
>gi|10281010|dbj|BAB13745.1| ribulose 1,5 bisphosphate carboxylase small subunit [Lilium
longiflorum]
Length = 107
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSI 73
++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+L +++
Sbjct: 13 FVGLK--SSSAFPVTQKPATGLPTLPSNGGRVQCMKVWPIVGKKKFETLSYLPTLPVEAL 70
Query: 74 AKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDG 110
K+I+Y+++ GW+PCLEF VG+V R+ + PGYYDG
Sbjct: 71 LKQIEYLIRSGWVPCLEFSLVGFVSRDYHQSPGYYDG 107
>gi|19466|emb|CAA38347.1| ribulose bisphosphate carboxylase [Larix laricina]
Length = 61
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 109 DGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
DGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR + F+N +Q QC+SF++ KP
Sbjct: 1 DGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 58
>gi|434384836|ref|YP_007095447.1| ribulose bisphosphate carboxylase small subunit [Chamaesiphon
minutus PCC 6605]
gi|428015826|gb|AFY91920.1| ribulose bisphosphate carboxylase small subunit [Chamaesiphon
minutus PCC 6605]
Length = 106
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
++FE SYLP LSD IAK++ YML +G+IP +EF + E ++ YWT+W
Sbjct: 8 RRFETFSYLPPLSDAQIAKQLQYMLDQGYIPGVEFSQ----DSEPTQ-------HYWTLW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP+F +++IL E++ C+ Y + ++R + F+N KQ Q +SF++ KP
Sbjct: 57 KLPLFNATTTNEILAEVRACRSEYGHCFVRVVGFDNIKQCQVLSFIVHKP 106
>gi|356574016|ref|XP_003555149.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase
small chain 1, chloroplastic-like [Glycine max]
Length = 119
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%), Gaps = 3/79 (3%)
Query: 35 SSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-E 93
+S ++NG + +CM W PI KKFE LSYLP+L D +AKE++Y+L+ GWIPCLEF+ E
Sbjct: 43 TSIAINNG-RVKCMHVWQPIG-KKFETLSYLPNLDDAQLAKEVEYLLRNGWIPCLEFELE 100
Query: 94 VGYVHRENSKMPGYYDGRY 112
G+V+RE+++ P YYDGRY
Sbjct: 101 HGFVYREHNRSPRYYDGRY 119
>gi|207080698|gb|ACI22694.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Secale cereale]
Length = 66
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 53/64 (82%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYY GRYWTMW
Sbjct: 3 KKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYXGRYWTMW 62
Query: 117 KLPM 120
KLPM
Sbjct: 63 KLPM 66
>gi|82256|pir||A05118 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
petunia (strain pSSU 51) (fragment)
Length = 68
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 105 PGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQ 164
PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA + F+N +Q QC+SF+
Sbjct: 4 PGYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAGSGIIGFDNVRQVQCISFIAY 63
Query: 165 KP 166
KP
Sbjct: 64 KP 65
>gi|339482709|ref|YP_004694495.1| ribulose bisphosphate carboxylase small chain [Nitrosomonas sp.
Is79A3]
gi|338804854|gb|AEJ01096.1| ribulose bisphosphate carboxylase small chain [Nitrosomonas sp.
Is79A3]
Length = 118
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP++SD I K++ Y++ KGW P +E E P Y YW M
Sbjct: 16 SRKFETFSYLPAMSDKDIKKQVQYLISKGWNPAIEHTE-----------PEYVMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D ++L E C KA PN ++R + +NN Q Q + +I + T
Sbjct: 65 WKLPMFGETDVDRVLAEAAACHKANPNNHVRLIGYNNFNQSQGTAMVIYRGKTV 118
>gi|359457376|ref|ZP_09245939.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 115
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 11/114 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
++FE SYLP L+DD I ++I Y+L +G+I +EF+ ++ P Y YWTMW
Sbjct: 8 RRFETFSYLPPLNDDQIRRQIQYILDQGYIAGIEFN--------DTPEPTEY---YWTMW 56
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
KLP+F +L EI EC+ Y + Y+R + F+N +Q Q MSF++ KP + +
Sbjct: 57 KLPLFKNPSVQDVLYEIGECRSEYSDKYVRVVGFDNIRQCQVMSFIVHKPGSNS 110
>gi|158334946|ref|YP_001516118.1| ribulose bisphosphate carboxylase, small subunit RbcS
[Acaryochloris marina MBIC11017]
gi|158305187|gb|ABW26804.1| ribulose bisphosphate carboxylase, small subunit RbcS
[Acaryochloris marina MBIC11017]
Length = 115
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 11/115 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE SYLP L+D+ I ++I Y+L +G+I +EF+ +S P Y YWTM
Sbjct: 7 ERRFETFSYLPPLNDEQIRRQIQYILDQGYIAGIEFN--------DSPEPTAY---YWTM 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
WKLP+F +L EI EC+ Y + Y+R + F+N +Q Q MSF++ KP + +
Sbjct: 56 WKLPLFKNPSVQDVLYEIDECRSEYSDKYVRVVGFDNIRQCQVMSFIVHKPGSNS 110
>gi|291613454|ref|YP_003523611.1| ribulose-bisphosphate carboxylase [Sideroxydans lithotrophicus
ES-1]
gi|291583566|gb|ADE11224.1| Ribulose-bisphosphate carboxylase [Sideroxydans lithotrophicus
ES-1]
Length = 118
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP+++ D I K+++Y++ KGW P +E E P Y YW M
Sbjct: 16 SRKFETFSYLPAMTADQIKKQVEYLVSKGWNPAIEHIE-----------PEYLMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D +++L E + C KA PN ++R + +NN Q Q + +I + T
Sbjct: 65 WKLPMFGETDVTKVLAEAEACHKANPNNHVRLIGYNNFNQSQGAAMVIFRGKTV 118
>gi|48093939|gb|AAT40305.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Coffea arabica]
gi|53680472|gb|AAU89438.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea arabica]
gi|53680474|gb|AAU89439.1| plastid ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Coffea canephora]
Length = 66
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 53 PINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGR 111
P KK+E LSYLP L+D+ + KEIDY+++ GW+PCLEF+ E G+V+RE + PGYYDGR
Sbjct: 1 PRGLKKYETLSYLPDLTDEQLLKEIDYLIRSGWVPCLEFELEKGFVYREYHRSPGYYDGR 60
Query: 112 YWTMWK 117
YWTMWK
Sbjct: 61 YWTMWK 66
>gi|298540030|emb|CBN72500.1| putative ribulose-bisphosphate carboxylase/oxygenase small subunit
[Populus deltoides x Populus maximowiczii]
Length = 62
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
YDGRYWTMWKLPMFGC ++SQ+L E+ E KKAYPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 1 YDGRYWTMWKLPMFGCTEASQVLVELGEAKKAYPNAFIRIIGFDNTRQVQCISFIAAKP 59
>gi|325981558|ref|YP_004293960.1| ribulose-bisphosphate carboxylase [Nitrosomonas sp. AL212]
gi|325531077|gb|ADZ25798.1| Ribulose-bisphosphate carboxylase [Nitrosomonas sp. AL212]
Length = 118
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP+++D I K++ Y++ KGW P +E E P Y YW M
Sbjct: 16 SRKFETFSYLPAMADKDIKKQVQYLISKGWNPAIEHTE-----------PEYVMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D ++L E C KA PN ++R + +NN Q Q + +I + T
Sbjct: 65 WKLPMFGETDVDKVLAEAAACHKANPNNHVRLIGYNNFTQSQGTAMVIYRGKTV 118
>gi|431930189|ref|YP_007243235.1| ribulose bisphosphate carboxylase small subunit [Thioflavicoccus
mobilis 8321]
gi|431828492|gb|AGA89605.1| ribulose bisphosphate carboxylase small subunit [Thioflavicoccus
mobilis 8321]
Length = 118
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 13/116 (11%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
+N++KFE SYLP++S + I ++++Y++ KGW P +E E EN+ +D YW
Sbjct: 14 VNSRKFETFSYLPAMSPEQIRQQVEYIVNKGWNPAIEHTE-----PENA-----FD-HYW 62
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFLIQKPT 167
MWKLPMFG D IL E + C KA+PN ++R + ++N Q QG M KP
Sbjct: 63 YMWKLPMFGETDVETILAEAEACHKAHPNNHVRLIGYDNYAQSQGAAMVIYRGKPV 118
>gi|94310442|ref|YP_583652.1| ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I)
small subunit (CbbS) [Cupriavidus metallidurans CH34]
gi|93354294|gb|ABF08383.1| ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I)
small subunit (CbbS) [Cupriavidus metallidurans CH34]
Length = 118
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP++ SI ++++Y++KKGW P +E E P Y YW M
Sbjct: 16 SRKFETFSYLPAMDAASIKRQVEYLVKKGWNPAIEHIE-----------PEYLMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D ++L E + C KA PN ++R + ++N KQ Q + ++ + T
Sbjct: 65 WKLPMFGETDVDRVLAEAKACHKANPNNHVRLVGYDNFKQSQGAAMVVYRGKTV 118
>gi|288941093|ref|YP_003443333.1| Ribulose-bisphosphate carboxylase [Allochromatium vinosum DSM 180]
gi|288896465|gb|ADC62301.1| Ribulose-bisphosphate carboxylase [Allochromatium vinosum DSM 180]
Length = 118
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 11/112 (9%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
+N++KFE SYLP++ D I K+++Y++ KGW P +E E P YW
Sbjct: 14 VNSRKFETFSYLPAMDADRIRKQVEYIVSKGWNPAIEHTE-----------PENAFDHYW 62
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG D IL E + C KA+PN ++R + F+N Q + ++ +
Sbjct: 63 YMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQSKGAEMVVYR 114
>gi|262275740|ref|ZP_06053549.1| ribulose bisphosphate carboxylase small chain [Grimontia hollisae
CIP 101886]
gi|262219548|gb|EEY70864.1| ribulose bisphosphate carboxylase small chain [Grimontia hollisae
CIP 101886]
Length = 119
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++KFE SYLP ++ D I +++++++ KGW P +E E P G YW
Sbjct: 15 HSRKFETFSYLPRMTADQIRRQVEFIVSKGWNPAIEHTE-----------PDEAGGAYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG + ILNE Q C PN ++R + ++N KQ Q S +I +
Sbjct: 64 MWKLPMFGETNVDHILNEAQLCHNLNPNHHVRLVGYDNDKQSQGASMVIYR 114
>gi|350553043|ref|ZP_08922230.1| Ribulose-bisphosphate carboxylase [Thiorhodospira sibirica ATCC
700588]
gi|349792035|gb|EGZ45902.1| Ribulose-bisphosphate carboxylase [Thiorhodospira sibirica ATCC
700588]
Length = 119
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP ++ + + K+++Y++KKGW P +E E P + YW M
Sbjct: 16 SRKFETFSYLPEMTPEQMRKQVEYIVKKGWNPAIEHTE-----------PEHAFDHYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG D +IL+E + C KA PN ++R + ++N Q Q + +I +
Sbjct: 65 WKLPMFGETDVDRILSEAEACHKANPNHHVRLIGYDNYTQSQGTAMVIYR 114
>gi|1352819|sp|P22850.4|RBS1_CHRVI RecName: Full=Ribulose bisphosphate carboxylase small chain 1;
Short=RuBisCO small subunit 1
gi|516603|gb|AAA23329.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Allochromatium vinosum]
Length = 118
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 11/112 (9%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
+N++KFE SYLP + D I K+++Y++ KGW P +E E P YW
Sbjct: 14 VNSRKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIEHTE-----------PENAFDHYW 62
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG D IL E + C KA+PN ++R + F+N Q + ++ +
Sbjct: 63 YMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQSKGAEMVVYR 114
>gi|445066474|gb|AGE14054.1| ribulose bisphosphate carboxylase small chain [uncultured
prokaryote]
Length = 118
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP++ +I K+++Y++KKGW P +E E P YW M
Sbjct: 16 SRKFETFSYLPAMDPATIRKQVEYIVKKGWNPAIEHTE-----------PENLMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D ++L E + CKKA PN ++R + ++N KQ Q + +I + T
Sbjct: 65 WKLPMFGETDVDKVLAEAEACKKANPNNHVRLVGYDNFKQSQGAAMVIYRGKTV 118
>gi|6119586|emb|CAB59536.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Planktothrix rubescens]
gi|6119590|emb|CAB59539.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Planktothrix rubescens]
Length = 98
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 11/103 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++FE LSYLP L+D I K++ Y+L +G+IP +EF E S P + YWT+
Sbjct: 7 ERRFETLSYLPPLTDAQIVKQVQYILDQGYIPGVEFSE--------SSEPTQH---YWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC 158
WKLP+F S ++LNE+Q C++ +YIR + F+N KQ Q
Sbjct: 56 WKLPLFNATTSQEVLNEVQACRQENSKSYIRVMGFDNVKQCQV 98
>gi|198284741|ref|YP_002221062.1| ribulose-bisphosphate carboxylase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666975|ref|YP_002427419.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|415990756|ref|ZP_11560007.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
sp. GGI-221]
gi|12642577|gb|AAK00292.1|AF307091_2 ribulose bisphosphate carboxylase/oxygenase, small subunit
[Acidithiobacillus ferrooxidans]
gi|198249262|gb|ACH84855.1| Ribulose-bisphosphate carboxylase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218519188|gb|ACK79774.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|339835207|gb|EGQ62908.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
sp. GGI-221]
Length = 118
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE LSYLP+L+ + I +++ Y++ KGW P +E E P G YW M
Sbjct: 16 SRKFETLSYLPALTAEQIRQQVAYIVSKGWNPAVEHTE-----------PENAFGNYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D IL E + C KA P+ ++R + ++N KQ Q S ++ + T
Sbjct: 65 WKLPMFGETDVDTILKEAEACHKANPHNHVRIVGYDNFKQSQGTSLVVYRGKTV 118
>gi|116790839|gb|ABK25759.1| unknown [Picea sitchensis]
Length = 142
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 14 GYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
+ GLK T++ +K S A W KT SNG + RCM+ W P NN KFE LSYLP L+
Sbjct: 37 AFTGLKSTAQFPSSMKISNAGAEWERKTTSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQ 96
Query: 71 DSIAKEIDYMLKKGWIPCLEFDEVGY 96
+ + KE++Y+L+ W+PCLEFDEV +
Sbjct: 97 EQLLKEVEYLLRNKWVPCLEFDEVKF 122
>gi|390949926|ref|YP_006413685.1| ribulose bisphosphate carboxylase small subunit [Thiocystis
violascens DSM 198]
gi|390426495|gb|AFL73560.1| ribulose bisphosphate carboxylase small subunit [Thiocystis
violascens DSM 198]
Length = 118
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 13/116 (11%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
+N++KFE SYLP++ D I K+++Y++ KGW P +E E EN+ +D YW
Sbjct: 14 VNSRKFETFSYLPAMEADKIRKQVEYIVAKGWNPAVEHTE-----PENA-----FD-HYW 62
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFLIQKPT 167
MWKLPMFG + IL E + C KA+PN ++R + F+N Q +G M KP
Sbjct: 63 YMWKLPMFGETNVDTILAEAEACHKAHPNNHVRLIGFDNYAQSKGAEMVVFRGKPV 118
>gi|78485184|ref|YP_391109.1| ribulose-bisphosphate carboxylase [Thiomicrospira crunogena XCL-2]
gi|78363470|gb|ABB41435.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiomicrospira
crunogena XCL-2]
Length = 114
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E S+LP L+ D I +I Y++ +GW P LE +E P YW MWKL
Sbjct: 15 LETFSFLPELTADEIYDQIVYIINQGWSPALEHEE-----------PAKASDHYWGMWKL 63
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
PMFG D +++L EI C++AYPN IR + ++N Q Q +F++ +P
Sbjct: 64 PMFGTRDPNEVLAEIDACRQAYPNHLIRLVGYDNYTQCQGHNFVVYRP 111
>gi|157073419|gb|ABV09128.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Chlorella pyrenoidosa]
Length = 82
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 50 TWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVH-----RENS 102
W P+NNK FE SYLP LS D IA+++DY++ GW PCLEF + YV R +
Sbjct: 1 VWKPVNNKFFETFSYLPPLSGDQIARQVDYIVLNGWTPCLEFADPDCAYVSNDSCVRFGN 60
Query: 103 KMPGYYDGRYWTMWKLPMFGC 123
GY D RYWTMWKLPMFGC
Sbjct: 61 VSVGYQDNRYWTMWKLPMFGC 81
>gi|1172864|sp|Q07088.1|RBS2_THIFE RecName: Full=Ribulose bisphosphate carboxylase small chain 2;
Short=RuBisCO small subunit 2
gi|297845|emb|CAA49815.1| ribulose-bisphosphate carboxylase [Acidithiobacillus ferrooxidans]
gi|228241|prf||1801238B RuBisCO:SUBUNIT=small
Length = 118
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 11/112 (9%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
KFE LSYLP+L+ D I +++ Y++ KGW P +E E P G YW MWK
Sbjct: 18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVEHTE-----------PENAFGNYWYMWK 66
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
LPMFG D IL E + C K P+ ++R + ++N KQ Q S ++ + T
Sbjct: 67 LPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLVVYRGKTV 118
>gi|57282084|emb|CAD29282.1| ribulose 1,5-bisphosphate carboxylase, small subunit [Oryza sativa]
Length = 144
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%)
Query: 39 VSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVH 98
VSNG R M K FE L YLP ++ + K+ +Y + PCLEF++ G+V+
Sbjct: 32 VSNGGXXRXMXXXPIXGXKXFEXLXYLPPVTGXXLLKQXEYXXRSKGXPCLEFNKXGFVY 91
Query: 99 RENSKMPGYYDGRYWTMWKLPMFGCNDSSQ 128
R N + PGYY+GRYWT WKLP FGC D +
Sbjct: 92 RXNXRSPGYYNGRYWTXWKLPXFGCTDPPR 121
>gi|394987912|ref|ZP_10380751.1| ribulose-bisphosphate carboxylase [Sulfuricella denitrificans
skB26]
gi|393793131|dbj|GAB70390.1| ribulose-bisphosphate carboxylase [Sulfuricella denitrificans
skB26]
Length = 118
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP+++ I +++Y++ KGW P +E E P Y YW M
Sbjct: 16 SRKFETFSYLPAMTAAEIKTQVEYLVSKGWNPAIEHVE-----------PEYLMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D +++L E + C KA PN ++R + +NN Q Q + +I + T
Sbjct: 65 WKLPMFGETDVTKVLAEAEACHKANPNNHVRLIGYNNFNQSQGAAMVIFRGKTV 118
>gi|289208044|ref|YP_003460110.1| ribulose-bisphosphate carboxylase [Thioalkalivibrio sp. K90mix]
gi|288943675|gb|ADC71374.1| Ribulose-bisphosphate carboxylase [Thioalkalivibrio sp. K90mix]
Length = 110
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
++K+E SYLP ++ D + K+I+Y L +GW P +E+ E +EN+ YW
Sbjct: 9 QSQKYETFSYLPEMNADQVRKQIEYCLAQGWNPAIEYSE-----KENAM------AHYWY 57
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLP FG +L EI+EC++A P +R +A++N Q Q M+F++ +
Sbjct: 58 MWKLPFFGEQSVEAVLQEIEECRRANPGMMVRFIAYDNYAQSQGMAFVVDR 108
>gi|3183157|sp|Q51857.1|RBS_PSEHY RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|505127|dbj|BAA06438.1| ribulose-1,5-bisphosphate carboxylase oxygenase small subunit
[Hydrogenophilus thermoluteolus]
Length = 124
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 11/116 (9%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
N +K+FE SYLP +S + I K+I+Y++ KGW P +E + EN+ +
Sbjct: 19 NDPKSKRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE-----HCEPENAIL------H 67
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
YW MWKLPMFG D +I+ EI+ CK++ PN I+ + ++N +Q Q + L+ +P
Sbjct: 68 YWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRPA 123
>gi|153871144|ref|ZP_02000388.1| Ribulose bisphosphate carboxylase, small chain [Beggiatoa sp. PS]
gi|152072390|gb|EDN69612.1| Ribulose bisphosphate carboxylase, small chain [Beggiatoa sp. PS]
Length = 118
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
N++KFE SYLP +S++ + K++ +++ KGW P +E E EN+ +D YW
Sbjct: 15 NSRKFETFSYLPEMSNEDMYKQVQFIVSKGWNPAVEHTE-----PENA-----FD-HYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG D +IL E C KA+P ++R + ++N KQ Q S +I +
Sbjct: 64 MWKLPMFGETDVEKILAEANACHKAHPTHHVRLVGYDNYKQSQGASMVIYR 114
>gi|121997836|ref|YP_001002623.1| ribulose-bisphosphate carboxylase [Halorhodospira halophila SL1]
gi|121589241|gb|ABM61821.1| ribulose 1,5-bisphosphate carboxylase small subunit [Halorhodospira
halophila SL1]
Length = 119
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
N+++FE SYLP +SD + K++ Y++ +GW P +E E EN+ +D YW
Sbjct: 15 NSRRFETFSYLPEMSDADVRKQVQYIVDQGWNPAIEHTEP-----ENA-----FD-HYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG D IL E + C KA+P ++R + ++N +Q Q + +I +
Sbjct: 64 MWKLPMFGETDVDAILKEAEACHKAHPEHHVRLIGYDNYRQTQGTAMVIYR 114
>gi|292493413|ref|YP_003528852.1| ribulose-bisphosphate carboxylase [Nitrosococcus halophilus Nc4]
gi|291582008|gb|ADE16465.1| Ribulose-bisphosphate carboxylase [Nitrosococcus halophilus Nc4]
Length = 119
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
++++FE SYLP + D I K+++Y++ KGW P +E H E YY W
Sbjct: 15 SSRRFETFSYLPEMDTDQIRKQVEYIVSKGWNPAIE-------HTEPENAFSYY----WY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
MWKLPMFG D IL E + C KA+P ++R + ++N KQ Q + +I
Sbjct: 64 MWKLPMFGETDVDTILAEAEACHKAHPTHHVRLIGYDNYKQSQGAAMVI 112
>gi|113477808|ref|YP_723869.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110168856|gb|ABG53396.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 111
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
+++E LSYLP L+D I K++ Y+L +G+I +EF E +++M YWT+
Sbjct: 7 ERRYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSESS-----DAEM------HYWTL 55
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
WKLP+F ++L EI C+ P+ +IR + F+N KQ Q +SF++ KP
Sbjct: 56 WKLPLFQARTIDEVLVEIDACRSENPDCFIRVMGFDNVKQCQVLSFIVHKP 106
>gi|74318641|ref|YP_316381.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiobacillus
denitrificans ATCC 25259]
gi|3183158|sp|Q56260.1|RBS_THIDA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|1051100|gb|AAB70698.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiobacillus
denitrificans]
gi|74058136|gb|AAZ98576.1| ribulose-bisphosphate carboxylase form I small chain [Thiobacillus
denitrificans ATCC 25259]
Length = 118
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP+++ I K+++Y++ KGW P +E E P + YW M
Sbjct: 16 SRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTE-----------PEHLMDSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D +IL E + C KA PN ++R + ++N Q Q + +I + T
Sbjct: 65 WKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQGAAMVIYRGKTV 118
>gi|114321984|ref|YP_743667.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Alkalilimnicola ehrlichii MLHE-1]
gi|114228378|gb|ABI58177.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Alkalilimnicola ehrlichii MLHE-1]
Length = 118
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K SYLP ++DD + ++++Y+++KGW P +E E EN+ M +W M
Sbjct: 16 SRKLGTFSYLPPMTDDELRRQVEYIIEKGWNPAIEHSEP-----ENAHM------YFWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLPMFG D ++L E + C KA+PN ++R + ++N Q Q + + + T
Sbjct: 65 WKLPMFGETDVDRVLAEAEACHKAHPNNHVRLIGYDNYAQSQGAAMTVYRAT 116
>gi|307946966|ref|ZP_07662301.1| ribulose bisphosphate carboxylase, small subunit [Roseibium sp.
TrichSKD4]
gi|307770630|gb|EFO29856.1| ribulose bisphosphate carboxylase, small subunit [Roseibium sp.
TrichSKD4]
Length = 119
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
N++K SYLP L+DD + +++Y++ KGW P +E E P YW
Sbjct: 15 NSRKMGTFSYLPQLTDDELRSQVEYIVAKGWNPAIEHTE-----------PENATSNYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG D + E++ CK A PN ++R + ++N KQ Q + ++ +
Sbjct: 64 MWKLPMFGETDVDAVFQEVELCKTANPNNHVRLIGYDNFKQSQGTAMVVHR 114
>gi|114778451|ref|ZP_01453296.1| ribulose bisphosphate carboxylase, small subunit [Mariprofundus
ferrooxydans PV-1]
gi|114551295|gb|EAU53853.1| ribulose bisphosphate carboxylase, small subunit [Mariprofundus
ferrooxydans PV-1]
Length = 118
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 13/116 (11%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
++++KFE SYLP + D I K+++Y++ +GW P +E E P YW
Sbjct: 14 VSSRKFETFSYLPEMDADRIRKQVEYIVSRGWNPAVEHTE-----------PESAFDHYW 62
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFLIQKPT 167
MWKLP+FG D +IL E + C KA+PN ++R + ++N Q +G M KP
Sbjct: 63 YMWKLPLFGETDVDRILGEAEACHKAHPNNHVRLVGYDNFAQSKGAEMVIFRGKPV 118
>gi|344200344|ref|YP_004784670.1| ribulose bisphosphate carboxylase small chain [Acidithiobacillus
ferrivorans SS3]
gi|343775788|gb|AEM48344.1| ribulose bisphosphate carboxylase small chain [Acidithiobacillus
ferrivorans SS3]
Length = 118
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE LSYLP+L+ I +++Y++ KGW P +E E EN+ +D YW M
Sbjct: 16 SRKFETLSYLPALTPAQIRNQVEYIVSKGWNPAIEHTEP-----ENA-----FD-HYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D IL E + C KA P+ ++R + ++N KQ Q + +I + T
Sbjct: 65 WKLPMFGETDVDHILKEAEACHKANPHNHVRLVGYDNFKQSQGAALVIYRGKTV 118
>gi|132088|sp|P16130.1|RBS2_ACECL RecName: Full=Ribulose bisphosphate carboxylase small chain 2;
Short=RuBisCO small subunit 2
gi|1345493|emb|CAA36104.1| ribulose bisphosphate carboxylase, small subunit precursor
[Acetabularia peniculus]
Length = 86
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 107 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 13 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 72
Query: 167 TTTT 170
+ T
Sbjct: 73 PSAT 76
>gi|399155338|ref|ZP_10755405.1| ribulose-bisphosphate carboxylase [SAR324 cluster bacterium SCGC
AAA001-C10]
Length = 119
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE SYLP + +D+ K+++Y++ KGW P +E E EN+ +D YW MW
Sbjct: 17 RKFETFSYLPEMDNDATRKQVEYIVSKGWNPAIEHTEP-----ENA-----FD-HYWYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG D +ILNE + C KA P ++R + ++N KQ Q + ++ +
Sbjct: 66 KLPLFGETDVDRILNEAELCHKANPGHHVRLIGYDNYKQSQGANMVVYR 114
>gi|427428951|ref|ZP_18918989.1| Ribulose bisphosphate carboxylase small chain [Caenispirillum
salinarum AK4]
gi|425881378|gb|EKV30067.1| Ribulose bisphosphate carboxylase small chain [Caenispirillum
salinarum AK4]
Length = 120
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K SYLP ++ + I K+I+Y++ KGW P +E E P + YW M
Sbjct: 17 SRKLGTFSYLPPMTAEQIRKQIEYIVAKGWNPAIEHTE-----------PKFASSNYWYM 65
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG D + IL EI+ CK A P ++R + ++N +Q Q + L+ +
Sbjct: 66 WKLPMFGETDVNAILAEIEACKAANPGNHVRLIGYDNIRQSQGANMLVHR 115
>gi|444377393|ref|ZP_21176624.1| Ribulose bisphosphate carboxylase small chain [Enterovibrio sp.
AK16]
gi|443678474|gb|ELT85143.1| Ribulose bisphosphate carboxylase small chain [Enterovibrio sp.
AK16]
Length = 119
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++KFE SYLP ++ + I +++++++ KGW P +E E P YW
Sbjct: 15 HSRKFETFSYLPRMTAEQIRRQVEFIVSKGWNPAIEHTE-----------PEEAASSYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG + QILNE Q C PN ++R + ++N +Q Q S +I +
Sbjct: 64 MWKLPMFGETNVDQILNEAQLCHNLNPNHHVRLIGYDNYRQSQGASMVIYR 114
>gi|91976027|ref|YP_568686.1| ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris
BisB5]
gi|91682483|gb|ABE38785.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Rhodopseudomonas palustris BisB5]
Length = 120
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
N++K SYLP + + + K+I+Y++ +GW +E E P + G YW
Sbjct: 16 NSRKLGTFSYLPPMDAEQLRKQINYIVNQGWTAAIEHTE-----------PSHATGYYWY 64
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG D ++L EI+ C+ A PN ++R + ++N Q Q S L+ +
Sbjct: 65 MWKLPMFGETDVDRVLTEIEACRAANPNHHVRLIGYDNVVQTQGTSMLVYR 115
>gi|228357|prf||1803224B RuBisCO:SUBUNIT=small:ISOTYPE=2
Length = 96
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 92 DEVGYVHRENSKM---PGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCL 148
D+ VH +M YD RYWTMWKLPMFGC D SQ+L EI C KA+P+AY+R +
Sbjct: 5 DQAYVVHDNTIRMGDCASTYDNRYWTMWKLPMFGCTDGSQVLTEIAACTKAFPDAYVRLV 64
Query: 149 AFNNQKQGQCMSFLIQKPTTTTS 171
F+ +Q Q FL+ +P + T
Sbjct: 65 CFDANRQVQISGFLVHRPGSATD 87
>gi|256370938|ref|YP_003108762.1| Ribulose-bisphosphate carboxylase [Acidimicrobium ferrooxidans DSM
10331]
gi|256007522|gb|ACU53089.1| Ribulose-bisphosphate carboxylase [Acidimicrobium ferrooxidans DSM
10331]
Length = 112
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
++++E SYLP ++ + I K++ Y++ KGW P +E E HR R+W
Sbjct: 9 TSRRYELFSYLPQMTPEQIRKQVLYLISKGWNPSVEHVEP---HRSME--------RFWY 57
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG + +L E++EC++AYP+ +R + ++N Q Q ++F++ +
Sbjct: 58 MWKLPMFGEQSAEVVLAELEECRRAYPDHLVRLVGYDNYTQSQGIAFVVYR 108
>gi|334144645|ref|YP_004537801.1| ribulose-bisphosphate carboxylase [Thioalkalimicrobium cyclicum
ALM1]
gi|333965556|gb|AEG32322.1| Ribulose-bisphosphate carboxylase [Thioalkalimicrobium cyclicum
ALM1]
Length = 114
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ +E S+LP LS D I +I Y++ +GW P LE + P YW MW
Sbjct: 13 RTYETFSFLPPLSQDEIYDQIVYIINQGWTPALE-----------HEAPQNASEHYWGMW 61
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP FG + Q+L E++ECK+AYP+ IR + ++N Q + F++ +P
Sbjct: 62 KLPFFGMRNPDQVLAELEECKRAYPDHLIRMVGYDNYTQCKGHEFVVYRP 111
>gi|209963587|ref|YP_002296502.1| ribulose bisphosphate carboxylase, small subunit [Rhodospirillum
centenum SW]
gi|209957053|gb|ACI97689.1| ribulose bisphosphate carboxylase, small subunit [Rhodospirillum
centenum SW]
Length = 119
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K SYLP L I ++++Y++ KGW P LE E P + YW M
Sbjct: 16 SRKLGTFSYLPPLDATQIRRQVEYIVAKGWNPALEHTE-----------PEHAASHYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLP+FG D ++L EI+ C++A P +IR + ++N KQ Q S ++ +
Sbjct: 65 WKLPLFGETDVDRVLAEIEACRQANPGHHIRLIGYDNIKQSQGTSMVVHR 114
>gi|220936359|ref|YP_002515258.1| Ribulose-bisphosphate carboxylase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219997669|gb|ACL74271.1| Ribulose-bisphosphate carboxylase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 110
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP ++ D + ++I Y + +GW P +E E +EN+ G YW MWK
Sbjct: 12 KYETFSYLPEMNADQVRRQIAYCIAQGWNPAVEHSE-----KENAF------GHYWYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
LP+FG +L EI+ C + YPN +R +A++N Q Q M+F++ +
Sbjct: 61 LPLFGEQSVDAVLAEIEACHREYPNQMVRFVAYDNYAQSQGMAFVVYR 108
>gi|336117613|ref|YP_004572381.1| ribulose bisphosphate carboxylase small chain family protein
[Microlunatus phosphovorus NM-1]
gi|334685393|dbj|BAK34978.1| ribulose bisphosphate carboxylase small chain family protein
[Microlunatus phosphovorus NM-1]
Length = 141
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
++ A SYLP L+DD IA ++ Y L GW +E+ + H N YW MW
Sbjct: 4 RYGAFSYLPDLTDDEIAAQVKYALDHGWPVSIEYTDD--PHPRNI---------YWEMWG 52
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
LP+F + +L++I EC+ A+P Y+R LA++ KQ MSFL+Q+PT+
Sbjct: 53 LPLFDLAEPDGVLDQINECRTAFPEHYVRMLAYDASLGKQTTAMSFLVQRPTS 105
>gi|377555998|ref|ZP_09785722.1| ribulose bisphosphate carboxylase, small subunit [endosymbiont of
Bathymodiolus sp.]
Length = 115
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP+L+ + + +I Y++ KGW P +E E P + G YW M
Sbjct: 13 SRKFETFSYLPTLTAEQMRVQIQYIVDKGWNPSIEHTE-----------PQHAAGSYWYM 61
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D IL EI+ C A+P+ ++R L +N Q S +I + T
Sbjct: 62 WKLPMFGETDVDAILQEIENCHAAHPDNHVRLLGLDNFAQCAGTSMVIYRGQTV 115
>gi|46359632|dbj|BAD15313.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Hydrogenovibrio marinus]
Length = 113
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E S+LP + D I +I Y++ +GW P LE + P YW MWKL
Sbjct: 14 LETFSFLPEFTADEIYDQIVYIINQGWTPALE-----------HEAPEAASSHYWGMWKL 62
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
PMFG D + +L EI +C+ AYPN IR + ++N Q Q +F++ +P
Sbjct: 63 PMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNFVVYRP 110
>gi|350563901|ref|ZP_08932721.1| Ribulose-bisphosphate carboxylase [Thioalkalimicrobium aerophilum
AL3]
gi|349778422|gb|EGZ32778.1| Ribulose-bisphosphate carboxylase [Thioalkalimicrobium aerophilum
AL3]
Length = 114
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ +E S+LP LS D I +I Y++ +GW P LE + P YW MW
Sbjct: 13 RTYETFSFLPPLSQDEIYDQIVYIINQGWTPALE-----------HEAPEKASAHYWGMW 61
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
KLP FG + Q+L E+ EC++AYP+ IR + ++N Q + F++ +P
Sbjct: 62 KLPFFGMRNPDQVLAELDECRRAYPDHLIRMVGYDNYTQCKGHEFVVYRP 111
>gi|1360708|emb|CAA40539.1| ribulose bisphosphate carboxylase small subunit [Batophora
oerstedii]
Length = 97
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 92 DEVGYVHRENSKMPG----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRC 147
D+ VH +M Y D RYWTMWKLPMFGC D SQ+L EI C KA+P+AY+R
Sbjct: 5 DQAYVVHDNTIRMGDCASTYEDNRYWTMWKLPMFGCTDGSQVLTEIAACTKAFPDAYVRL 64
Query: 148 LAFNNQKQGQCMSFLIQKPTTTTS 171
+ F+ +Q Q FL+ +P + T
Sbjct: 65 VCFDANRQVQISGFLVHRPGSATD 88
>gi|46577881|gb|AAT01430.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Solemya velum gill symbiont]
Length = 118
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++KFE SYLPS+ D I +I++++ KGW P +E E P G YW
Sbjct: 15 DSRKFETFSYLPSMDADQIRTQIEFIVSKGWNPSIEHTE-----------PANASGSYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
MWKLPMFG D IL E + C +A+P ++R L +N Q S +I + T
Sbjct: 64 MWKLPMFGETDVDAILAECEACHQAHPKNHVRLLGLDNYAQCAGASMVIYRGETV 118
>gi|374623384|ref|ZP_09695895.1| Ribulose-bisphosphate carboxylase [Ectothiorhodospira sp. PHS-1]
gi|373942496|gb|EHQ53041.1| Ribulose-bisphosphate carboxylase [Ectothiorhodospira sp. PHS-1]
Length = 110
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
++K+E SYLP ++ D + K+++YM+ KGW P +E E P G +W
Sbjct: 9 QSEKYETFSYLPQMTADQVRKQVEYMISKGWNPAIEHSE-----------PENAFGSFWY 57
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG +L E++ CK +P+ +R + ++N Q Q SF++ +
Sbjct: 58 MWKLPMFGEQSVETVLAEVEACKNEHPDHLVRVIGYDNFAQCQGTSFVVHR 108
>gi|269125900|ref|YP_003299270.1| Ribulose-bisphosphate carboxylase [Thermomonospora curvata DSM
43183]
gi|268310858|gb|ACY97232.1| Ribulose-bisphosphate carboxylase [Thermomonospora curvata DSM
43183]
Length = 141
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ IA +I Y L++GW +EF + H NS YW MW LPMF
Sbjct: 8 FSYLPDLTDEEIAAQISYALERGWPCSVEFTDDP--HPRNS---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + +L EI EC+KAYPN YIR A++ +Q +SF++ +P
Sbjct: 57 DLKDPAGVLQEINECRKAYPNHYIRLNAYDASYGRQTIALSFIVHRP 103
>gi|384260947|ref|YP_005416133.1| Ribulose bisphosphate carboxylase, small subunit [Rhodospirillum
photometricum DSM 122]
gi|378402047|emb|CCG07163.1| Ribulose bisphosphate carboxylase, small subunit [Rhodospirillum
photometricum DSM 122]
Length = 118
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
N++K SYLP + + K+IDY++ KGW P +E E P + YW
Sbjct: 14 NSRKLGTFSYLPPMDAAQLRKQIDYIVAKGWNPAIEHTE-----------PHHARSHYWY 62
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLP+FG + +IL+EI CK A+P ++R + ++ KQ Q + ++ +
Sbjct: 63 MWKLPLFGETNVDRILSEIDACKTAHPGHHVRLIGYDTIKQSQGTALIVHR 113
>gi|13486626|dbj|BAB39865.1| ribulose-1,5-bisphosphate carboxylase small subunit [Chlorella
vulgaris]
Length = 214
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 84 GWIPCLEFD--EVGYVHR-ENSKMPG------YYDGRYWTMWKLPMFGCNDSSQILNEIQ 134
GW P LEF E YV N + G YYD RYW M+KLPMFGC D+SQ+L EI
Sbjct: 89 GWTPALEFSNAESAYVKDVANIRFTGGSASCNYYDNRYWAMYKLPMFGCTDASQVLAEIA 148
Query: 135 ECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170
K +P++Y+R AF+ +Q Q ++ L+ +P + T
Sbjct: 149 NAVKTFPDSYVRMAAFDAVRQVQTVAILVHRPASAT 184
>gi|53803123|ref|YP_115144.1| ribulose bisphosphate carboxylase, small subunit [Methylococcus
capsulatus str. Bath]
gi|17646562|gb|AAL40974.1|AF447860_3 CbbS [Methylococcus capsulatus str. Bath]
gi|53756884|gb|AAU91175.1| ribulose bisphosphate carboxylase, small subunit [Methylococcus
capsulatus str. Bath]
Length = 118
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP ++ + I ++++Y++ +GW P +E E EN+ +D YW M
Sbjct: 16 SRKFETFSYLPPMNPEKIRRQVEYIVSRGWNPAIEHTEP-----ENA-----FD-HYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG D IL E + C KA+PN ++R + ++N +Q Q + +I +
Sbjct: 65 WKLPMFGETDVDAILAEAEACHKAHPNNHVRLVGYDNFRQTQGAAMVIYR 114
>gi|132132|sp|P24682.1|RBS_ALVHS RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|154658|gb|AAA27388.1| ribulose 1,5 bisphosphate carboxylase small subunit [Thiobacillus
sp.]
Length = 121
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++KFE SYLP L + I K+++Y++ KGW P +E E EN+ +D YW
Sbjct: 15 SSRKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVEHTE-----PENA-----FD-HYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
MWKLPMFG D IL E + C KA+P+ ++R + ++N Q Q + +I
Sbjct: 64 MWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVI 112
>gi|344342925|ref|ZP_08773795.1| Ribulose-bisphosphate carboxylase [Marichromatium purpuratum 984]
gi|343805477|gb|EGV23373.1| Ribulose-bisphosphate carboxylase [Marichromatium purpuratum 984]
Length = 118
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 69/113 (61%), Gaps = 11/113 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++KFE SYLP++S + I +++++++ KGW P +E E EN+ +D YW
Sbjct: 15 SSRKFETFSYLPAMSPEGIRQQVEFIVSKGWNPAIEHTE-----PENA-----FD-HYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
MWKLPMFG D IL E + C +A+P+ ++R + ++N Q Q + +I + T
Sbjct: 64 MWKLPMFGETDVDTILAEAEACHQAHPDNHVRLIGYDNYAQSQGAAMVIYRGT 116
>gi|4097318|gb|AAD10332.1| ribulose-1,5-bisphosphate carboxylase small subunit [Hydrogenophaga
pseudoflava]
Length = 116
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE SYLP++S+D I K+++Y++KKG P +E E P Y YW MW
Sbjct: 16 RKFETFSYLPAMSNDEIRKQVEYLVKKGLNPAIEHTE-----------PQYLMDSYWYMW 64
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLPMFG D ++L E + C+K P+ ++R + +NN Q Q S +I
Sbjct: 65 KLPMFGETDVDKVLAECEACRKN-PDNHVRLIGYNNFSQSQGASMVI 110
>gi|295697415|ref|YP_003590653.1| ribulose-bisphosphate carboxylase [Kyrpidia tusciae DSM 2912]
gi|295413017|gb|ADG07509.1| Ribulose-bisphosphate carboxylase [Kyrpidia tusciae DSM 2912]
Length = 143
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP SD+ IAK+++Y ++ GW +EF + H N YW MW LPMF
Sbjct: 11 FSYLPDFSDEEIAKQVEYSIQNGWAISIEFTDDP--HPRNV---------YWDMWGLPMF 59
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D++ +L E++ C+ AYPN YIR A++ +Q +SF++Q+P
Sbjct: 60 DIQDAAAVLTELRACRTAYPNCYIRLNAYDRSYGRQTTALSFIVQRP 106
>gi|383617672|gb|AFH41834.1| ribulose 1,5-bisphosphate carboxylase small subunit CbbS
[Candidatus Thiodictyon syntrophicum str. Cad16]
gi|387538539|gb|AFJ79538.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Candidatus Thiodictyon syntrophicum str. Cad16]
Length = 114
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP L+ D I +I Y++ GW P +E + P YWTMW
Sbjct: 14 QTLETFGFLPKLTQDEIYDQIAYLIGNGWTPAIEHEH-----------PSRSTDHYWTMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLP FG D +++ EI C +AYP ++R + ++N Q Q +SF++
Sbjct: 63 KLPFFGEQDMDRVMAEIDACHQAYPTHHVRLIGYDNYTQSQGVSFVV 109
>gi|89574394|gb|ABD77414.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Zingiber officinale]
Length = 121
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
+ GLK S P K + A S SNG + RCM+ W KKFE LSYLP+L D+++
Sbjct: 26 FSGLKSLSGVPFPTKRANAHLSHLPSNGCRVRCMQVWPIEGKKKFETLSYLPTLKDEALL 85
Query: 75 KEIDYMLKKGWIPCLEFDEVGYVHRENSKM 104
K+I+Y+L+ WIPCLEF + G+V R +K+
Sbjct: 86 KQIEYLLRSNWIPCLEFCKRGFVWRRTTKV 115
>gi|344337409|ref|ZP_08768343.1| Ribulose-bisphosphate carboxylase [Thiocapsa marina 5811]
gi|343802362|gb|EGV20302.1| Ribulose-bisphosphate carboxylase [Thiocapsa marina 5811]
Length = 118
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 13/115 (11%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
N++KFE SYLP + I K+++Y++ KGW P +E E EN+ +D YW
Sbjct: 15 NSRKFETFSYLPEMDQARIRKQVEYIVAKGWNPAIEHSEP-----ENA-----FD-HYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFLIQKPT 167
MWKLPMFG D IL E + C KA+P+ ++R + ++N Q +G M KP
Sbjct: 64 MWKLPMFGETDVDTILAEAEACHKAHPDNHVRLVGYDNYAQSKGAEMVVFRGKPV 118
>gi|22773768|gb|AAN05012.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Arthrospira platensis]
Length = 99
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 11/105 (10%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++E LSYLP L+D K++ Y+L++G+I +EF E S P + YWT
Sbjct: 6 KERRYETLSYLPPLTDAQTQKQLQYILEQGFIAGVEFSE--------SSAP---EQHYWT 54
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM 159
+WKLP+F +++ EI EC++ YP +IR + F+N KQ Q +
Sbjct: 55 LWKLPLFNATTVREVMAEIDECRREYPKCFIRVMGFDNVKQCQVL 99
>gi|384083527|ref|ZP_09994702.1| ribulose bisphosphate carboxylase, small chain [gamma
proteobacterium HIMB30]
Length = 115
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 11/112 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP S D + +I+Y++++GW P +E + P YWTMW
Sbjct: 14 QTLETFGFLPRFSQDEVYDQIEYLIRQGWTPSIEHEH-----------PSQCANSYWTMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KLPMFG D + I E++ C++AYP+ ++R + ++ Q Q + F++ + TT
Sbjct: 63 KLPMFGEKDLNTIAGELEACRRAYPDHHVRLIGYDAYTQSQGLCFVVYEGTT 114
>gi|92109472|ref|YP_571760.1| ribulose bisphosphate carboxylase, small chain [Nitrobacter
hamburgensis X14]
gi|91802554|gb|ABE64928.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrobacter
hamburgensis X14]
Length = 108
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 10/109 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
KK+E SYLP ++ D + ++I Y + +GW P +E E G + + YW MW
Sbjct: 10 KKYETFSYLPPMTPDQVRRQIAYAIAQGWNPAVEHTEKGTSAKTS----------YWYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG ++ EI+ C + +P+ +R LA++N Q Q M+F++ +
Sbjct: 60 KLPLFGEQSVDAVMAEIEACHREFPDQLVRFLAYDNYSQSQGMAFVVYR 108
>gi|350561895|ref|ZP_08930732.1| Ribulose-bisphosphate carboxylase [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780213|gb|EGZ34548.1| Ribulose-bisphosphate carboxylase [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 114
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP LS D + ++I Y++ +GW P +E H SK +Y WTMW
Sbjct: 14 QTLETFGFLPKLSQDEVHEQIAYIIAQGWSPAIE-------HEHPSKAFNHY----WTMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLP FG D ++ E++ C++AYP+ +IR L ++ Q Q SF++
Sbjct: 63 KLPFFGDTDLGHVVAELEACRRAYPDHHIRLLGYDAYAQTQGASFVV 109
>gi|3183149|sp|Q59459.1|RBS1_HYDMR RecName: Full=Ribulose bisphosphate carboxylase small chain 1;
Short=RuBisCO small subunit 1
gi|599562|dbj|BAA07730.1| ribulose-biphosphate carboxylase small subunit [Hydrogenovibrio
marinus]
Length = 117
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+K E SYLP ++ D I +++Y++ KGW P +E H E YY W MW
Sbjct: 17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE-------HSEPENAFSYY----WYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG D++ +L E+ C KA PN ++R + ++N Q Q + L+++
Sbjct: 66 KLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 114
>gi|46359626|dbj|BAD15308.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Hydrogenovibrio marinus]
Length = 117
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+K E SYLP ++ D I +++Y++ KGW P +E H E YY W MW
Sbjct: 17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE-------HSEPENAFSYY----WYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG D++ +L E+ C KA PN ++R + ++N Q Q + L+++
Sbjct: 66 KLPMFGETDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 114
>gi|255580409|ref|XP_002531031.1| conserved hypothetical protein [Ricinus communis]
gi|223529384|gb|EEF31348.1| conserved hypothetical protein [Ricinus communis]
Length = 81
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 1 MSASIFTAPVAGSGYLGLKPTS-KALLPVKDS-IAWSSKTVSNGSKTRCMKTWNPINNKK 58
MSA IFTAPVAGSGY GLK S K + P KDS +AWS KTVSNGSKT CMKTWNPINN K
Sbjct: 1 MSAGIFTAPVAGSGYHGLKANSTKQVFPAKDSSVAWSRKTVSNGSKTYCMKTWNPINNTK 60
Query: 59 FE 60
Sbjct: 61 LR 62
>gi|30468059|ref|NP_848946.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cyanidioschyzon merolae strain 10D]
gi|3914584|sp|O22024.1|RBS_CYAME RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|2541884|dbj|BAA22820.1| ribulosebiphosphate carboxylase small subunit [Cyanidioschyzon
merolae]
gi|30409159|dbj|BAC76108.1| ribulose bisphosphate carboxylase small chain (chloroplast)
[Cyanidioschyzon merolae strain 10D]
Length = 138
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC 123
YLP L+D+ I K+I Y + +GW +E+ + H NS YW MW LP+F
Sbjct: 10 YLPDLTDEQIRKQIQYAINQGWAVSVEYTDDP--HPRNS---------YWEMWGLPLFDV 58
Query: 124 NDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + I+ E+QEC+K +PN YI+ LAFN+ K + +SF++ +P
Sbjct: 59 KDPATIMFEVQECRKQFPNHYIKVLAFNSTKGIESTALSFIVNRP 103
>gi|345869239|ref|ZP_08821197.1| Ribulose-bisphosphate carboxylase [Thiorhodococcus drewsii AZ1]
gi|343923162|gb|EGV33854.1| Ribulose-bisphosphate carboxylase [Thiorhodococcus drewsii AZ1]
Length = 118
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 11/112 (9%)
Query: 54 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYW 113
+N++KFE SYLP++ + I K+++Y++ KGW P +E E EN+ +D +W
Sbjct: 14 VNSRKFETFSYLPAMDAERIRKQVEYIVGKGWNPAIEHTE-----PENA-----FD-HFW 62
Query: 114 TMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLP+FG D IL E + C KA+P ++R + ++N Q + ++ +
Sbjct: 63 YMWKLPLFGETDVETILAEAEACHKAHPENHVRLIGYDNYAQSKGAEMVVYR 114
>gi|445066527|gb|AGE14106.1| ribulose bisphosphate carboxylase small subunit [uncultured
prokaryote]
Length = 110
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 11/106 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP++S + + ++I Y++ +GW P +E H E ++ YY W MWK
Sbjct: 12 KYETFSYLPAMSPEKMRRQIAYIVSQGWNPGIE-------HVEPARAFNYY----WYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
LPMFG IL E++ C +A+PN ++R + ++N Q Q SF++
Sbjct: 61 LPMFGEQSVDAILAELEACHRAHPNHHVRLIGYDNYSQSQGSSFVV 106
>gi|255021039|ref|ZP_05293092.1| Ribulose bisphosphate carboxylase small chain [Acidithiobacillus
caldus ATCC 51756]
gi|340781669|ref|YP_004748276.1| ribulose bisphosphate carboxylase small chain [Acidithiobacillus
caldus SM-1]
gi|254969453|gb|EET26962.1| Ribulose bisphosphate carboxylase small chain [Acidithiobacillus
caldus ATCC 51756]
gi|340555822|gb|AEK57576.1| Ribulose bisphosphate carboxylase small chain [Acidithiobacillus
caldus SM-1]
Length = 110
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E SYLP S + + +I Y++ +GW P +E H E ++ YY W MW
Sbjct: 11 RRYETFSYLPPFSAEQVRAQIQYIIAQGWNPAVE-------HIEPNRPFTYY----WYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG + +L E++ C++ YPN IR + ++N Q Q +SF++ +
Sbjct: 60 KLPMFGERNVDAVLAELEACRREYPNHLIRLIGYDNYTQSQGLSFVVYR 108
>gi|387126409|ref|YP_006295014.1| ribulose bisphosphate carboxylase small subunit [Methylophaga sp.
JAM1]
gi|386273471|gb|AFI83369.1| Ribulose bisphosphate carboxylase small chain [Methylophaga sp.
JAM1]
Length = 118
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+++KFE SYLP + I K+++Y++ KGW P +E E P G YW
Sbjct: 15 SSRKFETFSYLPEMDAARIRKQVEYIVSKGWNPAVEHTE-----------PENAFGHYWY 63
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
MWKLP+FG D +IL E + C KA+P ++R + ++N Q + ++
Sbjct: 64 MWKLPLFGETDVDRILAEAEACHKAHPKNHVRLVGYDNYAQSKGAEMVV 112
>gi|269148502|gb|ACZ28641.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured organism]
Length = 119
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K+E SYLP LS +SI +I Y++ KGW P +E E P YW M
Sbjct: 17 SRKYETFSYLPPLSKESIRAQIQYIVDKGWNPGIEHTE-----------PENAVSNYWYM 65
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLP+FG + IL E++ C KA+P ++R L F+N Q + ++ + T+
Sbjct: 66 WKLPLFGETNVDTILAEVEACHKAHPKNHVRLLGFDNFAQSAGAAMVLYRGTSV 119
>gi|386816038|ref|ZP_10103256.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiothrix
nivea DSM 5205]
gi|386420614|gb|EIJ34449.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiothrix
nivea DSM 5205]
Length = 109
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP LS + I +I Y++ +GW P +E E P YW MWK
Sbjct: 12 KYETFSYLPQLSAEEIRTQIQYVIAQGWNPAVEHVE-----------PSGAARNYWFMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
LPMFG +L E+ C++ YPN ++R + ++N Q Q +F++ +
Sbjct: 61 LPMFGEQSVDVVLAELDACRREYPNHHVRLIGYDNYTQSQGTAFIVYR 108
>gi|2541894|dbj|BAA22829.1| ribulosebiphosphate carboxylase small subunit [Cyanidium caldarium]
Length = 138
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 13/106 (12%)
Query: 64 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC 123
YLP L+D+ I K++ Y + GW +E+ + H NS YW MW LP+F
Sbjct: 10 YLPDLTDEQIRKQLQYAINNGWALSVEYTDDP--HPRNS---------YWEMWGLPLFDV 58
Query: 124 NDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D + ++ E+QEC+K YPN YI+ LAFN+ K + +SF++ +P
Sbjct: 59 KDPATVMFEVQECRKQYPNYYIKVLAFNSTKGIESTALSFIVNRPV 104
>gi|430762252|ref|YP_007218109.1| Ribulose bisphosphate carboxylase small chain [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430011876|gb|AGA34628.1| Ribulose bisphosphate carboxylase small chain [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 114
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP LS D + ++I Y++ +GW P +E H SK +Y W MW
Sbjct: 14 QTLETFGFLPKLSQDEVHEQIAYIIAQGWTPAIE-------HEHPSKAFNHY----WPMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLP FG D ++ E++ C++AYP+ +IR L ++ Q Q SF++
Sbjct: 63 KLPFFGDTDLGHVVAELEACRRAYPDHHIRLLGYDAYAQTQGASFVV 109
>gi|146280064|ref|YP_001170221.1| hypothetical protein Rsph17025_4064 [Rhodobacter sphaeroides ATCC
17025]
gi|145558305|gb|ABP72916.1| ribulose 1,5-bisphosphate carboxylase small subunit [Rhodobacter
sphaeroides ATCC 17025]
Length = 117
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K SYLP +++D I +++++++K GW P +E E P + G YW M
Sbjct: 15 SRKMGTFSYLPPMTEDEIRRQVEWIVKNGWNPAIEHTE-----------PEFASGTYWYM 63
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG + IL E++ C +A P+ ++R + ++N Q Q + ++ +
Sbjct: 64 WKLPMFGETEVDTILGELKACHEANPDNHVRLIGYDNFTQSQSANMVVYR 113
>gi|85715088|ref|ZP_01046072.1| ribulose bisphosphate carboxylase, small chain [Nitrobacter sp.
Nb-311A]
gi|85698003|gb|EAQ35876.1| ribulose bisphosphate carboxylase, small chain [Nitrobacter sp.
Nb-311A]
Length = 108
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
KK+E SYLP ++ D + ++I + + +GW P +E E G P YW MW
Sbjct: 10 KKYETFSYLPQMTPDQVRRQIAHAIAQGWNPAVEHTEKG--------TPA--KASYWYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG ++ EI+ C + +P+ +R +A++N Q Q M+F++ +
Sbjct: 60 KLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFVVYR 108
>gi|385763955|gb|AFI78778.1| ribulose-1,5-bisphosphate carboxylase, small subunit [uncultured
bacterium ws198A12]
Length = 118
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE SYLP ++ + I +++ Y++ +GW P +E E P YW MW
Sbjct: 17 RKFETFSYLPEMNAEQIRRQVQYIVAQGWNPGIEHTE-----------PENAVDNYWYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG +D I+NE C A+PN ++R L F+N Q S +I +
Sbjct: 66 KLPMFGEDDVDVIINECVACHNAHPNNHVRLLGFDNFAQSAGASMVIYR 114
>gi|16902066|dbj|BAB71855.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Nitrosomonas sp. ENI-11]
Length = 108
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 55 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWT 114
+ KK+E SYLP L+ + + ++I Y + +GW P +E G +E+ +W
Sbjct: 8 STKKYETFSYLPQLTPEQVRRQIAYAIAQGWNPAVEHTVKGTPAKES----------FWH 57
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
MWKLPMFG +L EI+ C + +P+ +R +A++N Q Q ++F++ +
Sbjct: 58 MWKLPMFGEQSVDVVLTEIEACHREFPDQMVRFVAYDNYAQSQGVAFVVYR 108
>gi|456391746|gb|EMF57106.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit-2
[Streptomyces bottropensis ATCC 25435]
Length = 142
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A SYL LSD+ I K+I Y L W +EF + H N+ YW MW LPM
Sbjct: 7 AFSYLADLSDEEIEKQIQYALDNDWPLSVEFTDDP--HPRNT---------YWDMWGLPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
F D++ +L E+ EC+KAYPN Y+R A++ + +Q +SF++ +P
Sbjct: 56 FDLRDAAGVLLEVNECRKAYPNHYVRINAYDARLGRQTTALSFIVNRP 103
>gi|114330815|ref|YP_747037.1| ribulose-bisphosphate carboxylase [Nitrosomonas eutropha C91]
gi|114307829|gb|ABI59072.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrosomonas
eutropha C91]
Length = 108
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
KK+E SYLP ++ + + ++I Y L +GW P +E G +E+ +W M
Sbjct: 9 TKKYETFSYLPQMTPEQVRRQIAYALAQGWNPAVEHAVKGTSAKES----------FWHM 58
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG +L EI+ C + +P+ +R +A++N Q Q ++F++ +
Sbjct: 59 WKLPMFGEQSVDAVLAEIEACHREFPDQMVRFIAYDNYSQSQGVAFVVYR 108
>gi|71842226|ref|YP_277314.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Emiliania huxleyi]
gi|60101469|gb|AAX13813.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Emiliania huxleyi]
gi|336286144|gb|AEI29480.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Emiliania huxleyi]
Length = 139
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I Y L K W +E+ + H N+ YW MW LP+F
Sbjct: 8 FSFLPDLTDEQITKQIQYALNKSWALSIEYTDDP--HPRNN---------YWEMWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D + +L EI CKKA PN Y++C+AF+N + + +SF++Q+P
Sbjct: 57 DMKDPAAVLFEINMCKKAKPNFYVKCVAFDNTRGTESAVLSFIVQRPA 104
>gi|3183151|sp|Q59461.1|RBS2_HYDMR RecName: Full=Ribulose bisphosphate carboxylase small chain 2;
Short=RuBisCO small subunit 2
gi|599565|dbj|BAA07732.1| ribulose-biphosphate carboxylase small subunit [Hydrogenovibrio
marinus]
Length = 122
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E S+LP + D I +I Y++ +GW P LE + P YW MWKL
Sbjct: 14 LETFSFLPEFTADEIYDQIVYIINQGWTPALE-----------HEAPEAASSHYWGMWKL 62
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSF 161
PMFG D + +L EI +C+ AYPN IR + ++N Q Q +F
Sbjct: 63 PMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105
>gi|374249511|ref|YP_005088730.1| rbcS gene product [Phaeocystis antarctica]
gi|340008202|gb|AEK26834.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Phaeocystis antarctica]
Length = 139
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K+I Y L K W +EF + H NS YW MW LP+
Sbjct: 7 AFSFLPDLTDEQITKQIQYALNKSWAVSIEFTDDP--HPRNS---------YWEMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + +L EI +KA PN Y++C F+N + + C+SF++Q+P
Sbjct: 56 FDIKDPAAVLFEINMARKAKPNFYVKCACFDNTRGVESCCLSFIVQRPA 104
>gi|407787051|ref|ZP_11134194.1| ribulose-bisphosphate carboxylase [Celeribacter baekdonensis B30]
gi|407200459|gb|EKE70467.1| ribulose-bisphosphate carboxylase [Celeribacter baekdonensis B30]
Length = 118
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K E SYLP ++ D I ++ +++ GW P +E H E YY W M
Sbjct: 16 SRKMETFSYLPEMTRDQIRAQVQWIVDNGWNPAIE-------HTEPENAMDYY----WYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG D IL EI+EC+ A P ++R L ++N Q Q + ++ +
Sbjct: 65 WKLPMFGETDVDAILAEIEECRTANPKHHVRLLGYDNFTQSQGANMVVHR 114
>gi|262293425|gb|ACY42746.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Acidithiomicrobium sp. P2]
Length = 111
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+ + + +I Y++ +GW P +E E P + YW MWKLPMF
Sbjct: 17 FSYLPPLTPEQVRSQIVYLISQGWTPAVEHVE-----------PEHASDHYWYMWKLPMF 65
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
G ++ E++ C++AYP ++R + ++N Q Q +SF++
Sbjct: 66 GEQSPEAVIAELEACRRAYPGHHVRLIGYDNFSQSQGISFVV 107
>gi|296134617|ref|YP_003641859.1| ribulose-bisphosphate carboxylase [Thiomonas intermedia K12]
gi|410692139|ref|YP_003622760.1| Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(RubisCO) [Thiomonas sp. 3As]
gi|4105519|gb|AAD02446.1| ribulose bisphosphate carboxylase/oxygenase small subunit
[Thiomonas intermedia K12]
gi|294338563|emb|CAZ86892.1| Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(RubisCO) [Thiomonas sp. 3As]
gi|295794739|gb|ADG29529.1| Ribulose-bisphosphate carboxylase [Thiomonas intermedia K12]
Length = 109
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
KK+E SYLP ++ + + ++I Y + +GW P +E E G R + +W M
Sbjct: 10 TKKYETFSYLPQMTPEQVRRQIAYTIAQGWNPAVEHTEKGTSARVS----------FWYM 59
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLP+FG +L E++ C + +P+ +R +A++N Q Q ++F++ +
Sbjct: 60 WKLPLFGEQSVDAVLAELEACHREFPDHMVRFVAYDNYAQSQGLAFVVYR 109
>gi|431932224|ref|YP_007245270.1| ribulose bisphosphate carboxylase small subunit [Thioflavicoccus
mobilis 8321]
gi|431830527|gb|AGA91640.1| ribulose bisphosphate carboxylase small subunit [Thioflavicoccus
mobilis 8321]
Length = 114
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP L+ D I +I Y+L GW P +E + P YWTMW
Sbjct: 14 QTLETFGFLPKLTQDEIYDQIAYLLANGWTPAIEHEH-----------PSQAFDHYWTMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 162
KLP+FG D + EI C +AYP+ ++R + ++N Q Q + F+
Sbjct: 63 KLPLFGEQDLENVAAEIDACHRAYPDHHVRLIGYDNYTQSQGVCFV 108
>gi|18252621|gb|AAL66360.1|AF459718_3 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS
[Nitrosospira sp. TCH716]
Length = 108
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
KK+E SYLP ++ + + ++I + + +GW P +E E G P YW MW
Sbjct: 10 KKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVEHTEEG--------TPA--KASYWYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG ++ EI+ C + +P+ +R +A++N Q Q M+F++ +
Sbjct: 60 KLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFVVYR 108
>gi|75676176|ref|YP_318597.1| ribulose bisphosphate carboxylase, small chain [Nitrobacter
winogradskyi Nb-255]
gi|3183159|sp|Q59614.1|RBS_NITVU RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|5230813|gb|AAD41021.1|AF109914_2 ribulose 1,5 bis-phosphate carboxylase/oxygenase S subunit
[Nitrobacter winogradskyi]
gi|349305|gb|AAA25510.1| ribulose bisphosphate carboxylase small subunit [Nitrobacter
vulgaris]
gi|74421046|gb|ABA05245.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrobacter
winogradskyi Nb-255]
Length = 108
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
KK+E SYLP ++ + + ++I + + +GW P +E E G P YW MW
Sbjct: 10 KKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVEHTEKG--------TPA--KASYWYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG ++ EI+ C + +P+ +R +A++N Q Q M+F++ +
Sbjct: 60 KLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFVVYR 108
>gi|78484773|ref|YP_390698.1| ribulose-bisphosphate carboxylase [Thiomicrospira crunogena XCL-2]
gi|78363059|gb|ABB41024.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiomicrospira
crunogena XCL-2]
Length = 116
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+K E SYLP ++ + I ++ Y++ +GW P +E H E YY W MW
Sbjct: 16 RKAETFSYLPKMTAEQIKAQVQYIIDRGWNPAIE-------HSEPENAFSYY----WYMW 64
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG D+ +L E+ C KA PN ++R + ++N Q Q + L+++
Sbjct: 65 KLPMFGETDADAVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 113
>gi|344343643|ref|ZP_08774510.1| Ribulose-bisphosphate carboxylase [Marichromatium purpuratum 984]
gi|343804627|gb|EGV22526.1| Ribulose-bisphosphate carboxylase [Marichromatium purpuratum 984]
Length = 113
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
+ E SYLP LS + I ++I ++L GW +E H S+ YY W MWK
Sbjct: 15 RHETFSYLPPLSREEIVEQILFILDNGWNASIE-------HEHPSRAFEYY----WPMWK 63
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
LP FG D Q+L EI+ C+++YP+ ++R + ++ Q + +FL+ +
Sbjct: 64 LPFFGVQDPEQLLTEIEACRRSYPDHHVRLVGYDTFAQTKGHAFLVHR 111
>gi|377813676|ref|YP_005042925.1| ribulose 1,5-bisphosphate carboxylase small subunit [Burkholderia
sp. YI23]
gi|357938480|gb|AET92038.1| ribulose 1,5-bisphosphate carboxylase small subunit [Burkholderia
sp. YI23]
Length = 138
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+DD I+ +I+Y L +GW +E+ + H N+ YW MW LPM
Sbjct: 7 TFSFLPQLTDDEISSQINYALDQGWSCSIEYTDDP--HPRNT---------YWEMWGLPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
F +D++ +L E+ EC+K YPN YI+ AF++ + + M SF++ +P
Sbjct: 56 FDLHDAAGVLMEVNECRKTYPNHYIKVNAFDSVRGFETMRLSFMVNRP 103
>gi|399154504|ref|ZP_10754571.1| ribulose-bisphosphate carboxylase [gamma proteobacterium SCGC
AAA007-O20]
Length = 119
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE SYLP+++D I +++ Y++ +G+ P +E EV EN+ YW MW
Sbjct: 17 RKFETFSYLPAMTDKQIREQVQYIVNQGYNPGIEHTEV-----ENAMQ------NYWYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG D IL E + C A P+ ++R + ++N Q Q S +I +
Sbjct: 66 KLPMFGETDVDTILAECKACHDANPDNHVRLIGYDNYAQSQGASMVIYR 114
>gi|386826614|ref|ZP_10113721.1| ribulose bisphosphate carboxylase small subunit [Beggiatoa alba
B18LD]
gi|386427498|gb|EIJ41326.1| ribulose bisphosphate carboxylase small subunit [Beggiatoa alba
B18LD]
Length = 138
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +I+Y LK W +EF + H NS YW MW++PMF
Sbjct: 8 FSFLPDLTDEQIRAQIEYCLKNNWAVSVEFTDDP--HPRNS---------YWEMWQMPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAF--NNQKQGQCMSFLIQKPTT 168
D++ I+ EI C+KAYP+ YI+ AF N ++ +SF++ +P T
Sbjct: 57 DLKDAAAIMYEINACRKAYPDQYIKVNAFDSNRWRESLALSFIVNRPAT 105
>gi|356960274|ref|ZP_09063256.1| ribulose bisphosphate carboxylase, small subunit [gamma
proteobacterium SCGC AAA001-B15]
Length = 119
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+KFE SYLP+++D I +++ Y++ +G+ P +E EV EN+ YW MW
Sbjct: 17 RKFETFSYLPAMTDKQIREQVQYIVDQGYNPGIEHTEV-----ENAMQ------NYWYMW 65
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG D IL E + C A P+ ++R + ++N Q Q S +I +
Sbjct: 66 KLPMFGETDVDTILAECKACHDANPDNHVRLIGYDNYAQSQGASMVIYR 114
>gi|218665037|ref|YP_002426112.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|415998124|ref|ZP_11560539.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
sp. GGI-221]
gi|218517250|gb|ACK77836.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|339835799|gb|EGQ63440.1| ribulose bisphosphate carboxylase, small subunit [Acidithiobacillus
sp. GGI-221]
gi|451311358|gb|AGF34163.1| cbbS [uncultured bacterium DX-8J-22]
Length = 110
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP++ + + ++I Y++ +GW P +E H E + YY W MWK
Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLVNQGWNPGIE-------HVEPERASTYY----WYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
LPMFG ++ E++ C +A+PN ++R + ++N Q Q +F++
Sbjct: 61 LPMFGEQSVDTVIAELEACHRAHPNHHVRLIGYDNYSQSQGSAFVV 106
>gi|345873280|ref|ZP_08825195.1| Ribulose-bisphosphate carboxylase [Thiorhodococcus drewsii AZ1]
gi|343917371|gb|EGV28174.1| Ribulose-bisphosphate carboxylase [Thiorhodococcus drewsii AZ1]
Length = 113
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
++E SYLP LS D + ++I Y+L GW LE H S+ YY W MWK
Sbjct: 15 RYETFSYLPPLSRDEVMEQILYILDNGWNASLE-------HEHPSRSFEYY----WPMWK 63
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
+P FG D + IL EI+ C+++YP+ ++R + ++ Q + +FL+ +
Sbjct: 64 MPFFGEQDPNVILAEIESCRRSYPDHHVRLVGYDTYAQSKGHAFLVYR 111
>gi|344342079|ref|ZP_08772988.1| Ribulose-bisphosphate carboxylase [Thiocapsa marina 5811]
gi|343798035|gb|EGV16000.1| Ribulose-bisphosphate carboxylase [Thiocapsa marina 5811]
Length = 114
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP ++ + I +I Y++ +GW P +E ++H P YWTMW
Sbjct: 14 RTLETFGFLPPMTQEEIFDQIAYIIAQGWTPGIE-----HIH------PSKAMNHYWTMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLP FG D +Q+++E++ C ++YP+ ++R ++N Q Q F++
Sbjct: 63 KLPFFGVTDLAQVVSELEACHRSYPDHHVRVTGYDNYTQSQGSCFVV 109
>gi|804822|dbj|BAA14230.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Allochromatium vinosum]
Length = 113
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
++E SYLP L+ + I ++I Y+L GW LE H + YY W MWK
Sbjct: 15 RYETFSYLPPLNREEILEQILYILDNGWNASLE-------HEHPDRAFEYY----WPMWK 63
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
+P FG D + IL EI+ C+++YP+ ++R + ++ Q + SFL +P
Sbjct: 64 MPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112
>gi|146338727|ref|YP_001203775.1| ribulose bisphosphate carboxylase small chain [Bradyrhizobium sp.
ORS 278]
gi|146191533|emb|CAL75538.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. ORS 278]
Length = 139
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD IA +I Y L+KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQIAAQIQYCLEKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
D++ I+ E+ EC+K Y + YIR AF++ + +SF++ +P T
Sbjct: 57 DLRDAAGIMRELAECRKIYGDRYIRISAFDSSHGWESTRLSFIVNRPKT 105
>gi|292493418|ref|YP_003528857.1| ribulose-bisphosphate carboxylase [Nitrosococcus halophilus Nc4]
gi|291582013|gb|ADE16470.1| Ribulose-bisphosphate carboxylase [Nitrosococcus halophilus Nc4]
Length = 144
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y LK W +E+ + H N+ YW M+ +PMF
Sbjct: 14 FSFLPDLTDDQILAQIKYALKNNWAVNVEYTDDP--HPRNT---------YWEMFGMPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + IL E+ +C+K +PN YIR AFN+ + + CMSF++ +P
Sbjct: 63 DLKDPAGILMEVNDCRKTFPNHYIRVTAFNSDRGVESPCMSFIVNRP 109
>gi|270056515|gb|ACZ59480.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Acidithiomicrobium sp. P2]
Length = 138
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +I Y L KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPPLTDEQILAQIQYALDKGWAINVEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D + I+ EI EC+KAYP Y+R AF++++ + MS+++ +P
Sbjct: 57 DLKDPAAIMYEINECRKAYPKHYVRVTAFDSKRGWETPRMSYIVNRP 103
>gi|344201212|ref|YP_004785538.1| ribulose bisphosphate carboxylase small chain [Acidithiobacillus
ferrivorans SS3]
gi|343776656|gb|AEM49212.1| ribulose bisphosphate carboxylase small chain [Acidithiobacillus
ferrivorans SS3]
Length = 110
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP++ + + ++I Y++ +GW P +E H E + YY W MWK
Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLISQGWNPGIE-------HVEPERASTYY----WYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
LPMFG ++ E++ C +A+P ++R + ++N Q Q SF++
Sbjct: 61 LPMFGEQSVDTVIAELEACHRAHPGHHVRLIGYDNYSQSQGSSFVV 106
>gi|413965449|ref|ZP_11404675.1| ribulose-bisphosphate carboxylase [Burkholderia sp. SJ98]
gi|413928123|gb|EKS67412.1| ribulose-bisphosphate carboxylase [Burkholderia sp. SJ98]
Length = 138
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ +I+Y L++GW +E+ + H N+ YW MW LPMF
Sbjct: 8 FSFLPPLTDEEISAQINYALEQGWACSVEYTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E+ EC+K YPN YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLMEVNECRKTYPNHYIKVNAFDSVRGFETMRLSFMVNRP 103
>gi|189095296|ref|YP_001936309.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|189095348|ref|YP_001936361.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|132149|sp|P14961.1|RBS_OLILU RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|552794|gb|AAA84532.1| carboxylase/oxygenase small subunit (gtg start codon) (chloroplast)
[Olisthodiscus luteus]
gi|46309260|dbj|BAD15115.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|46309265|dbj|BAD15119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|93360053|gb|ABF13418.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|93360056|gb|ABF13420.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|93360059|gb|ABF13422.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|93360062|gb|ABF13424.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|93360065|gb|ABF13426.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|93360068|gb|ABF13428.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|157694639|gb|ABV65915.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|157694691|gb|ABV65967.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|157777870|gb|ABV70056.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|157777922|gb|ABV70108.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|310696669|gb|ADP06395.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|310696672|gb|ADP06397.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
gi|310696675|gb|ADP06399.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Heterosigma akashiwo]
Length = 139
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A SYLP L+D I K+IDY L +GW +E+ + H N+ YW +W LP+
Sbjct: 7 AFSYLPDLTDAQIIKQIDYCLSRGWSVGVEWTDDP--HPRNA---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
F DSS IL E+ EC++ P YI+ +AFN + + +F++Q+P +
Sbjct: 56 FDVKDSSAILYEVNECRRLNPEGYIKLVAFNAARGTESSASAFIVQRPKS 105
>gi|146278744|ref|YP_001168903.1| ribulose-bisphosphate carboxylase [Rhodobacter sphaeroides ATCC
17025]
gi|145556985|gb|ABP71598.1| ribulose 1,5-bisphosphate carboxylase small subunit [Rhodobacter
sphaeroides ATCC 17025]
Length = 129
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ +++Y L +GW LE+ + H N+ YW MW +PMF
Sbjct: 8 FSFLPDLTDEQISAQVEYCLSRGWAVSLEYTDAP--HPRNT---------YWEMWGMPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D ++ E++EC+KA+P+ YIR AF++ + + MSF++ +P
Sbjct: 57 DLRDPKGVMMELEECRKAFPDHYIRINAFDSTRGFETVTMSFIVNRP 103
>gi|148257627|ref|YP_001242212.1| ribulose 1,5-bisphosphate carboxylase small subunit [Bradyrhizobium
sp. BTAi1]
gi|146409800|gb|ABQ38306.1| ribulose 1,5-bisphosphate carboxylase small subunit [Bradyrhizobium
sp. BTAi1]
Length = 139
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD IA ++ Y L+KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQIAAQVQYSLEKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ I++E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMHELAECRKIYGDRYIRISAFDSSHGWESTRLSFIVNRP 103
>gi|393775878|ref|ZP_10364183.1| CbbS protein [Ralstonia sp. PBA]
gi|392717134|gb|EIZ04703.1| CbbS protein [Ralstonia sp. PBA]
Length = 139
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+++Y L KGW +E+ + H N+ YW M+ LPM
Sbjct: 7 TFSFLPELTDEQITKQLNYCLDKGWAVGIEYTDDP--HPRNT---------YWEMFGLPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
F D++ IL EI C+K +PN YIR AF+N + SF++ +P
Sbjct: 56 FDLRDAAGILQEINNCRKTFPNHYIRVTAFDNTHTVESVVTSFIVNRP 103
>gi|288942450|ref|YP_003444690.1| Ribulose-bisphosphate carboxylase [Allochromatium vinosum DSM 180]
gi|298286855|sp|P22860.2|RBS2_ALLVD RecName: Full=Ribulose bisphosphate carboxylase small chain 2;
Short=RuBisCO small subunit 2
gi|288897822|gb|ADC63658.1| Ribulose-bisphosphate carboxylase [Allochromatium vinosum DSM 180]
Length = 113
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
++E SYLP L+ + I ++I Y+L GW LE H + YY W MWK
Sbjct: 15 RYETFSYLPPLNREEILEQILYILDNGWNASLE-------HEHPDRAFEYY----WPMWK 63
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
+P FG D + IL EI+ C+++YP+ ++R + ++ Q + SFL+ +
Sbjct: 64 MPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLVHR 111
>gi|77163863|ref|YP_342388.1| ribulose-bisphosphate carboxylase [Nitrosococcus oceani ATCC 19707]
gi|76882177|gb|ABA56858.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrosococcus
oceani ATCC 19707]
Length = 145
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +I Y LK W +E+ + H N+ YW M+ +PMF
Sbjct: 14 FSFLPDLTDEQILAQIKYALKNDWAVNVEYTDDP--HPRNT---------YWEMFGIPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + I+ EI +C+K YPN Y+R AFN+ + + CMSF++ +P
Sbjct: 63 DLKDPAGIMMEINDCRKTYPNHYVRVTAFNSHRGVESPCMSFIVNRP 109
>gi|381156905|ref|ZP_09866139.1| ribulose bisphosphate carboxylase small subunit [Thiorhodovibrio
sp. 970]
gi|380880768|gb|EIC22858.1| ribulose bisphosphate carboxylase small subunit [Thiorhodovibrio
sp. 970]
Length = 114
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP L+ D I +I Y++ +GW P +E +VH NS YWTMW
Sbjct: 14 QTLETFGFLPPLTQDEIYDQIAYIIAQGWTPAIE-----HVHPSNSMK------DYWTMW 62
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLP FG + + ++NE++ C + YP+ ++R +++ Q Q F++
Sbjct: 63 KLPFFGETELANVVNELEGCHRTYPDHHVRLTGYDSYTQSQGSCFVV 109
>gi|300115285|ref|YP_003761860.1| ribulose-bisphosphate carboxylase [Nitrosococcus watsonii C-113]
gi|299541222|gb|ADJ29539.1| Ribulose-bisphosphate carboxylase [Nitrosococcus watsonii C-113]
Length = 144
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +I Y LK W +E+ + H N+ YW M+ +PMF
Sbjct: 14 FSFLPDLTDEQILAQIKYALKNDWAVNVEYTDDP--HPRNT---------YWEMFGIPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + I+ EI +C+K YPN Y+R AFN+ + + CMSF++ +P
Sbjct: 63 DLKDPAGIMMEINDCRKTYPNHYVRVTAFNSHRGVESPCMSFIVNRP 109
>gi|384084469|ref|ZP_09995644.1| ribulose bisphosphate carboxylase small chain [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 110
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+++E SYLP +S + I +I Y++ +GW P +E H E S+ +Y W MW
Sbjct: 11 RRYETFSYLPPMSAEQIRAQIQYIVAQGWNPAVE-------HVEPSRSFTHY----WYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG IL E++ C + YP ++ + ++N Q Q ++F++ +
Sbjct: 60 KLPMFGERSVDAILAELEACHREYPGHLVKLIGYDNYTQSQGLAFVVYR 108
>gi|42572015|ref|NP_974098.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
thaliana]
gi|332196474|gb|AEE34595.1| ribulose bisphosphate carboxylase small chain 1A [Arabidopsis
thaliana]
Length = 136
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 40 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD----EVG 95
SNG + CM+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EFD V
Sbjct: 48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTDLCTVS 107
Query: 96 YVHRENSKMPG 106
V ++ M G
Sbjct: 108 TVTHPDTMMDG 118
>gi|358345786|ref|XP_003636956.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355502891|gb|AES84094.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 175
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
++GLK S A PV + SNG + CM+ W PI KKFE LSYLP L+ + +A
Sbjct: 97 FVGLK--SMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLA 154
Query: 75 KEIDYMLKKGWIPCLEFD 92
KE++Y+++KGW+ CLEF+
Sbjct: 155 KEVEYLIRKGWVACLEFE 172
>gi|149071986|ref|YP_001293519.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Rhodomonas salina]
gi|134302937|gb|ABO70741.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Rhodomonas salina]
Length = 139
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K+I Y + K W +E+ + H NS YW +W LP+
Sbjct: 7 AFSFLPDLTDEQIVKQIQYAINKNWALNVEWTDDP--HPRNS---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
FG D++ ++ E+ C+K+ PN Y++ AF+N + + +SF++Q+PT+
Sbjct: 56 FGVKDAAAVMFEVNACRKSKPNYYVKVNAFDNSRGVESCVLSFIVQRPTS 105
>gi|11467654|ref|NP_050706.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Guillardia theta]
gi|132137|sp|P14960.1|RBS_GUITH RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|68040|pir||RKMDS ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
Cryptomonas sp. chloroplast
gi|3602979|gb|AAC35640.1| ribulose 1,5-bisphosphate carboxylase small subunit (chloroplast)
[Guillardia theta]
Length = 139
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K+I Y + K W +E+ + H N+ YW +W LP+
Sbjct: 7 AFSFLPDLTDEQIVKQIQYAISKNWALNVEWTDDP--HPRNA---------YWDLWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
FG D + ++ EI C+KA P Y++ AF+N + + C+SF++Q+PT+
Sbjct: 56 FGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRPTS 105
>gi|358347596|ref|XP_003637842.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355503777|gb|AES84980.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 106
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 15 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIA 74
++GLK S A PV + SNG + CM+ W PI KKFE LSYLP L+ + +A
Sbjct: 28 FVGLK--SMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLA 85
Query: 75 KEIDYMLKKGWIPCLEFD 92
KE++Y+++KGW+ CLEF+
Sbjct: 86 KEVEYLIRKGWVACLEFE 103
>gi|383759458|ref|YP_005438443.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS
[Rubrivivax gelatinosus IL144]
gi|381380127|dbj|BAL96944.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS
[Rubrivivax gelatinosus IL144]
Length = 144
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 13/119 (10%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP S+LP L+D+ I +I+Y LKKG+ +E+ + H N+
Sbjct: 4 NPTGRLTQGQFSFLPDLTDEEITLQIEYGLKKGYAWSIEYTDD--PHPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
YW M+ +PMF D++ +L E+ C+K +PN YIR +AF++ + + MSFL+ +P T
Sbjct: 53 YWEMYGMPMFDLQDAAGVLMELNACRKTFPNHYIRLMAFDSTRGIESIAMSFLVNRPPT 111
>gi|375094660|ref|ZP_09740925.1| ribulose bisphosphate carboxylase small subunit [Saccharomonospora
marina XMU15]
gi|374655393|gb|EHR50226.1| ribulose bisphosphate carboxylase small subunit [Saccharomonospora
marina XMU15]
Length = 143
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ I+ +I Y L GW +E+ + H N YW MW LPMF
Sbjct: 8 FSYLPDLTDEEISAQIQYALDNGWPLSVEYTDD--PHPRNH---------YWDMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
+D++ +L E+ EC++A+P Y+R A++ +Q +SF++ +P+
Sbjct: 57 DLHDAAGVLYEVNECRRAFPEHYVRVNAYDASYGRQTTALSFIVNRPSA 105
>gi|358345794|ref|XP_003636960.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355502895|gb|AES84098.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 106
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A PV + SNG + CM+ W PI KKFE LSYLP L+
Sbjct: 24 AVAPFVGLK--SMAGFPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD 92
+ +AKE++Y+++KGW+ CLEF+
Sbjct: 82 EQLAKEVEYLIRKGWVACLEFE 103
>gi|445066547|gb|AGE14125.1| ribulose bisphosphate carboxylase small subunit [uncultured
prokaryote]
gi|451311293|gb|AGF34100.1| ribulose-bisphosphate carboxylase small chain [uncultured bacterium
DX-1A-14]
Length = 110
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP L+ D I ++I +++ GW P +E E P +W MWK
Sbjct: 12 KYETFSYLPQLTPDQIREQIKFIVAHGWNPSVEHVE-----------PERSFNHFWYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
LPMFG +I+ E++ C + +P ++R + ++N Q Q +F++ +
Sbjct: 61 LPMFGEQSVDRIIAEVEACHREHPGHHVRVIGYDNYSQSQGTAFVVYR 108
>gi|374609194|ref|ZP_09681991.1| Ribulose-bisphosphate carboxylase [Mycobacterium tusciae JS617]
gi|373552934|gb|EHP79537.1| Ribulose-bisphosphate carboxylase [Mycobacterium tusciae JS617]
Length = 143
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A SYLP +D+ I +I+Y L GW +EF + H N+ YW MW LPM
Sbjct: 7 AFSYLPDFTDEEITAQINYALSNGWPLSVEFTDD--PHPRNT---------YWEMWGLPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
F D++ +L E+ C+ A PN+YIR A+++ +Q +SF++ +P
Sbjct: 56 FDLKDAAGVLMEVNACRAANPNSYIRLNAYDSSLGRQTTALSFIVNRP 103
>gi|189219274|ref|YP_001939915.1| Ribulose bisphosphate carboxylase small subunit [Methylacidiphilum
infernorum V4]
gi|161075737|gb|ABX56616.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Methylacidiphilum infernorum V4]
gi|189186132|gb|ACD83317.1| Ribulose bisphosphate carboxylase small subunit [Methylacidiphilum
infernorum V4]
Length = 140
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ IA ++ Y++ +GW +E+ + + YW MW LP+F
Sbjct: 8 FSYLPDLTDEEIAAQVQYIIDQGWSIMIEYTDNPHPRHT-----------YWDMWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + ++ E+ EC+KAYPN YIR +N Q+ Q +SF+ +P
Sbjct: 57 DIKDPAAVMQELNECRKAYPNHYIRISGYNRQQGYQTTMISFICNRP 103
>gi|4096344|gb|AAD04747.1| ribulose-1,5-bisphosphate carboxylase, small subunit [Palmaria
palmata]
Length = 138
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+DD I+K++ Y + KGW +E+ + H NS YW +W LP+
Sbjct: 7 AFSFLPDLTDDQISKQVSYAMGKGWSVNIEYTDD--PHPRNS---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPTT 168
F D+ ++ EI C+KA+P YI+ AF+N + + +SF+I +P +
Sbjct: 56 FDIPDAPTVMYEISSCRKAHPGVYIKVNAFDNTRGVESCSLSFIINRPAS 105
>gi|132159|sp|P28896.1|RBS1_THIFE RecName: Full=Ribulose bisphosphate carboxylase small chain 1;
Short=RuBisCO small subunit 1
gi|217161|dbj|BAA14142.1| ribulose bisphosphate carboxylase/oxygenase small subunit
[Acidithiobacillus ferrooxidans]
Length = 110
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP++ + + ++I Y++ +GW P +E H E + YY W MWK
Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE-------HVEPERASTYY----WYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
LPMFG ++ E++ C +A+P ++R + ++N Q Q +F++
Sbjct: 61 LPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFVV 106
>gi|374998625|ref|YP_004974124.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Azospirillum lipoferum 4B]
gi|357426050|emb|CBS88949.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Azospirillum lipoferum 4B]
Length = 146
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y L +GW +EF + H NS YWTMW PMF
Sbjct: 8 FSFLPDLTDEEITKQVQYALDQGWAVAVEFTDD--PHPRNS---------YWTMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKPTT 168
D+ ++ EI C+ A+P+ Y++ LAF++ + MS+LI +P
Sbjct: 57 DLRDAKGVMMEIDACRSAHPDQYVKVLAFDSSYGFETVRMSYLINRPAV 105
>gi|283794868|ref|YP_003359221.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cryptomonas paramecium]
gi|253981840|gb|ACT46757.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cryptomonas paramecium]
Length = 139
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP LS+D I K+I Y + KGW +E+ + P Y YW +W LP+
Sbjct: 7 AFSFLPDLSEDQILKQIQYAINKGWALNVEWTD--------DPHPRNY---YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
FG D++ ++ E+ C+K PN Y++ AF++ + + C+S ++Q+PT+
Sbjct: 56 FGVKDATAVMFEVNACRKVKPNNYVKLNAFDSGRGVESCCLSLIVQRPTS 105
>gi|295698871|ref|YP_003606764.1| ribulose-bisphosphate carboxylase [Burkholderia sp. CCGE1002]
gi|295438084|gb|ADG17253.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. CCGE1002]
Length = 142
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +IDY L++GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEIGLQIDYALRQGWACSVEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E++ C++A P YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLQEVRACREARPQHYIKVNAFDSVRTFETMRLSFIVNRP 103
>gi|242624314|ref|YP_003002232.1| ribulose bisphosphate carboxlyase small chain [Aureoumbra
lagunensis]
gi|239997422|gb|ACS36944.1| ribulose bisphosphate carboxlyase small chain [Aureoumbra
lagunensis]
Length = 139
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+DD I K+++Y + KGW +E+ + H N+ YW MW LP+
Sbjct: 7 AFSFLPDLTDDQIRKQVEYAISKGWAVSIEWTDD--PHPRNT---------YWDMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
F C D + +L E+ EC+K P+ YI+ AF+ + + ++F+ +P T
Sbjct: 56 FDCKDPAAVLFELNECRKLNPDGYIKLQAFDASRGVESCALAFIASRPAT 105
>gi|384916405|ref|ZP_10016563.1| Ribulose bisphosphate carboxylase small chain [Methylacidiphilum
fumariolicum SolV]
gi|335335214|gb|AEH40984.1| ribulose bisphosphate carboxylase small subunit [Methylacidiphilum
fumariolicum SolV]
gi|384526181|emb|CCG92436.1| Ribulose bisphosphate carboxylase small chain [Methylacidiphilum
fumariolicum SolV]
Length = 138
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
SYLP +D+ IA ++ Y++ +GW +E+ + H N+ YW MW LP+
Sbjct: 7 TFSYLPDFTDEEIAAQVQYIIDQGWSVMIEYTDDP--HPRNT---------YWDMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
F DS+ ++ E+ +C+KA+PN YIR +N Q+ Q +SF+ +P
Sbjct: 56 FDIKDSAAVMQELNQCRKAFPNHYIRISGYNRQQGYQSTMISFICNRP 103
>gi|5230816|gb|AAD41023.1|AF109915_2 ribulose 1,5 bis-phosphate carboxylase/oxygenase S subunit
[Nitrobacter winogradskyi]
Length = 108
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
KK+E SYLP + + + ++I + +GW P +E E G P YW MW
Sbjct: 10 KKYETXSYLPQMXPEQVRRQIAXAIAQGWNPAVEHTEKG--------TPA--KASYWYMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG ++ EI+ C + +P+ +R +A++N Q Q M+F++ +
Sbjct: 60 KLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFVVYR 108
>gi|91978184|ref|YP_570843.1| ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris
BisB5]
gi|91684640|gb|ABE40942.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Rhodopseudomonas palustris BisB5]
Length = 141
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ I+ ++ Y L KGW LEF + H N+ YW MW LPMF
Sbjct: 8 FSYLPDLTDEQISAQVQYALGKGWAVNLEFTDD--PHPRNT---------YWEMWALPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ +L E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLQDAAGVLMELTECRKVYGDRYIRLSAFDSSHGWESVRLSFIVHRP 103
>gi|358345732|ref|XP_003636929.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
gi|355502864|gb|AES84067.1| Ribulose bisphosphate carboxylase small chain 3A [Medicago
truncatula]
Length = 613
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 11 AGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSD 70
A + ++GLK S A P+ + SNG + CM+ W PI KKFE LSYLP L+
Sbjct: 24 AVAPFVGLK--SMAGFPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTR 81
Query: 71 DSIAKEIDYMLKKGWIPCLEFD 92
+ +AKE++Y+++KGW+ CLEF+
Sbjct: 82 EQLAKEVEYLIRKGWVACLEFE 103
>gi|198283507|ref|YP_002219828.1| ribulose-bisphosphate carboxylase [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|4836661|gb|AAD30509.1|AF129925_3 CbbS [Acidithiobacillus ferrooxidans]
gi|198248028|gb|ACH83621.1| Ribulose-bisphosphate carboxylase [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 110
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP++ + + ++I Y++ +GW P +E H E + YY W MWK
Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLVNQGWNPGIE-------HVEPERASTYY----WYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
LPMFG ++ E++ C +A+ N ++R + ++N Q Q +F++
Sbjct: 61 LPMFGEQSVDTVIAELEACHRAHSNHHVRLIGYDNYSQSQGSAFVV 106
>gi|170328|gb|AAA34116.1| ribulose-1,5-bisphosphate carboxylase small subunit, partial
[Nicotiana tabacum]
Length = 101
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 15 YLGLKPTSKALLPV--KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDS 72
+ GLK S A PV K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS +
Sbjct: 26 FTGLK--SAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQ 82
Query: 73 IAKEIDYMLKKGWIPCLEF 91
+ E++Y+LK GW+PCLEF
Sbjct: 83 LLSEVEYLLKNGWVPCLEF 101
>gi|386815391|ref|ZP_10102609.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiothrix
nivea DSM 5205]
gi|386419967|gb|EIJ33802.1| ribulose 1,5-bisphosphate carboxylase small subunit [Thiothrix
nivea DSM 5205]
Length = 119
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 11/112 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++KFE SYLP++SD+ I ++I +++ KGW P +E E EN++ G YW M
Sbjct: 17 SRKFETFSYLPAMSDEQIRQQIQFIISKGWNPSIEHTEP-----ENAR------GSYWYM 65
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
WKLPMFG IL E + C KA+P+ ++R L +N Q S +I + T
Sbjct: 66 WKLPMFGETSVDNILAECEACHKAHPDNHVRLLGLDNYAQCAGASMVIYRGT 117
>gi|88810429|ref|ZP_01125686.1| Ribulose bisphosphate carboxylase, small chain [Nitrococcus mobilis
Nb-231]
gi|88792059|gb|EAR23169.1| Ribulose bisphosphate carboxylase, small chain [Nitrococcus mobilis
Nb-231]
Length = 111
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
+ E +LP+L+ D + ++I Y+L +GW P +E + P YW MW
Sbjct: 11 QTLETFGFLPALTQDELDEQIAYILSQGWTPSIEHEH-----------PSNLMNDYWPMW 59
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
KLP FG +L E++ C +AYP ++R + +++ Q Q ++F++
Sbjct: 60 KLPFFGETSLENVLRELEACHRAYPTHHVRLIGYDSYTQSQGLAFVV 106
>gi|402850952|ref|ZP_10899137.1| Ribulose bisphosphate carboxylase small chain [Rhodovulum sp. PH10]
gi|402498810|gb|EJW10537.1| Ribulose bisphosphate carboxylase small chain [Rhodovulum sp. PH10]
Length = 155
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D I+ +I+Y L+KGW +EF + H N+ YW MW +PM
Sbjct: 34 AFSFLPDLTDQQISAQIEYALEKGWAVAIEFTDDP--HPRNT---------YWDMWGIPM 82
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
F D++ ++ E++ C++A P+ YIR AF++ + + ++F++ +P
Sbjct: 83 FDLRDAAGVMGEVKACREANPDCYIRLSAFDSTRGWETVRLAFIVHRP 130
>gi|113955247|ref|YP_731169.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
CC9311]
gi|113882598|gb|ABI47556.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
CC9311]
Length = 113
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLIE-----HVHPSNSM------ASYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ QGQ F++
Sbjct: 65 PFFGEKDLNVVVSELEACHRAYPDHHVRMVGYDAYTQGQGACFVV 109
>gi|33240003|ref|NP_874945.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33237529|gb|AAP99597.1| Ribulose bisphosphate carboxylase small subunit [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 113
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP +S D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMSQDEIYDQIAYIIAQGWSPVIE-----HVHPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + ++NE++ C +AYP+ ++R + ++ Q Q +F++
Sbjct: 65 PFFGEKDLNVVVNELEACHRAYPDHHVRMVGYDAYTQSQGTAFVV 109
>gi|16611904|gb|AAL27402.1|AF426428_3 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS
[Nitrosospira sp. 40KI]
Length = 144
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I+ +I Y LK GW +E+ + H N+ YW M+ PMF
Sbjct: 14 FSFLPPLTDKQISAQIKYALKNGWAIGIEYTDD--PHPRNT---------YWEMFGNPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + IL+EI +C+K YPN YIR AFN+ + + MS+++ +P
Sbjct: 63 DLKDPAGILSEINDCRKTYPNHYIRVTAFNSARGVESPTMSYIVNRP 109
>gi|405778179|dbj|BAM44860.1| ribulose bisphosphate carboxylase small subunit, partial
[Botryococcus braunii]
Length = 74
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 7/74 (9%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVH-----RE 100
M W P NNK FE SYLP LSD IAK+++Y++ G++PCLEF + YV R
Sbjct: 1 MLVWTPTNNKFFETFSYLPPLSDGEIAKQVEYIVNNGYVPCLEFADSDQAYVSDKSLIRM 60
Query: 101 NSKMPGYYDGRYWT 114
N+ PGYYD RYWT
Sbjct: 61 NNVAPGYYDNRYWT 74
>gi|332524185|ref|ZP_08400412.1| ribulose bisphosphate carboxylase small subunit [Rubrivivax
benzoatilyticus JA2]
gi|332107521|gb|EGJ08745.1| ribulose bisphosphate carboxylase small subunit [Rubrivivax
benzoatilyticus JA2]
Length = 118
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K SYLP +S I K+ID++++ GW P +E E P + YW M
Sbjct: 16 SRKMGTFSYLPPMSPQQIRKQIDWIVQNGWNPAIEHVE-----------PQHAMHSYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
WKLPMFG D +L E++ C +A P ++R + ++N Q Q + +I +
Sbjct: 65 WKLPMFGETDIDLVLAELEACHRANPGNHVRLIGYDNFSQSQGANMVIYR 114
>gi|78185180|ref|YP_377615.1| ribulose-bisphosphate carboxylase [Synechococcus sp. CC9902]
gi|116072223|ref|ZP_01469490.1| Ribulose-bisphosphate carboxylase [Synechococcus sp. BL107]
gi|352094692|ref|ZP_08955863.1| Ribulose-bisphosphate carboxylase [Synechococcus sp. WH 8016]
gi|78169474|gb|ABB26571.1| ribulose 1,5-bisphosphate carboxylase small subunit [Synechococcus
sp. CC9902]
gi|116064745|gb|EAU70504.1| Ribulose-bisphosphate carboxylase [Synechococcus sp. BL107]
gi|351681032|gb|EHA64164.1| Ribulose-bisphosphate carboxylase [Synechococcus sp. WH 8016]
Length = 113
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ QGQ F++
Sbjct: 65 PFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQGQGSCFVV 109
>gi|375103563|ref|ZP_09749824.1| ribulose bisphosphate carboxylase small subunit [Burkholderiales
bacterium JOSHI_001]
gi|374664294|gb|EHR69079.1| ribulose bisphosphate carboxylase small subunit [Burkholderiales
bacterium JOSHI_001]
Length = 146
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 13/118 (11%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP S+LP L+D I+ +I+Y LKKG+ +E+ + H N+
Sbjct: 4 NPTGRITQGQFSFLPDLTDAEISLQIEYGLKKGYAWSVEYTDD--PHPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPT 167
YW M+ +PMF D++ +L E+ C+K +PN YIR +AF++ + + MSF++ +PT
Sbjct: 53 YWEMFGMPMFDLKDAAGVLMELNNCRKTFPNHYIRLMAFDSTRNVETIAMSFIVNRPT 110
>gi|307727436|ref|YP_003910649.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. CCGE1003]
gi|307587961|gb|ADN61358.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. CCGE1003]
Length = 142
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ +IDY L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEISLQIDYALSQGWACSVEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E++ C+ A P+ YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLQEVKACRAARPDHYIKVNAFDSVRGFETMRLSFIVNRP 103
>gi|209521284|ref|ZP_03270003.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. H160]
gi|209498291|gb|EDZ98427.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. H160]
Length = 142
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +I+Y L++GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEIGLQINYALRQGWACSIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E++ C++A P YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLQEVRACREARPQHYIKVNAFDSVRTFETMRLSFIVNRP 103
>gi|170690071|ref|ZP_02881238.1| Ribulose-bisphosphate carboxylase [Burkholderia graminis C4D1M]
gi|170144506|gb|EDT12667.1| Ribulose-bisphosphate carboxylase [Burkholderia graminis C4D1M]
Length = 142
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +IDY L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEIGLQIDYALSQGWACSVEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E++ C+ A P+ YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLQEVKACRAARPDHYIKVNAFDSVRGFETMRLSFIVNRP 103
>gi|157741870|gb|ABV69590.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit-2
[Mycobacterium sp. DSM 3803]
Length = 141
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP +D+ I +I+Y L GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSYLPDFTDEEITAQINYALDNGWPLSVEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + +L E+ C++A PN Y+R A++ + +Q +SF++Q+P
Sbjct: 57 DLKDPAGVLLEVNACREAKPNHYVRLNAYDARLGRQTTALSFIVQRP 103
>gi|365889267|ref|ZP_09427973.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. STM 3809]
gi|365335026|emb|CCE00504.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. STM 3809]
Length = 139
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ IA +I Y L+KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQIAAQIQYCLEKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ I+ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMRELAECRKIYGDRYIRISAFDSSHGWESTRLSFIVNRP 103
>gi|209967298|ref|YP_002300213.1| ribulose bisphosphate carboxylase small chain [Rhodospirillum
centenum SW]
gi|209960764|gb|ACJ01401.1| ribulose bisphosphate carboxylase small chain [Rhodospirillum
centenum SW]
Length = 146
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I+K++ Y L++GW +E+ + P Y YW MW PMF
Sbjct: 8 FSFLPDLTDAEISKQVQYALEQGWAVAVEY--------TDDPHPRNY---YWHMWGTPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D+ ++ EI C+KA+P+ Y++ LAF++ + + MSF++ +P
Sbjct: 57 DLRDAKGVVMEIDACRKAHPDMYVKVLAFDSSEGFESVRMSFIVNRPA 104
>gi|407709129|ref|YP_006792993.1| ribulose-bisphosphate carboxylase small subunit [Burkholderia
phenoliruptrix BR3459a]
gi|407237812|gb|AFT88010.1| ribulose-bisphosphate carboxylase small chain [Burkholderia
phenoliruptrix BR3459a]
Length = 142
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ +IDY L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEISLQIDYALSQGWACSVEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E++ C+ A P+ YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLQEVKACRAARPDHYIKINAFDSVRGFETMRLSFIVNRP 103
>gi|323528281|ref|YP_004230433.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. CCGE1001]
gi|323385283|gb|ADX57373.1| Ribulose-bisphosphate carboxylase [Burkholderia sp. CCGE1001]
Length = 142
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ +IDY L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEISLQIDYALSQGWACSVEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
+D++ +L E++ C+ A P+ YI+ AF++ + + M SF++ +P
Sbjct: 57 DLHDAAGVLQEVKACRAARPDHYIKINAFDSVRGFETMRLSFIVNRP 103
>gi|332528013|ref|ZP_08404047.1| ribulose-bisphosphate carboxylase [Rubrivivax benzoatilyticus JA2]
gi|332112587|gb|EGJ12380.1| ribulose-bisphosphate carboxylase [Rubrivivax benzoatilyticus JA2]
Length = 144
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP S+LP L+D+ I +I+Y LKKG+ +E+ + H N+
Sbjct: 4 NPTGRLTQGQFSFLPDLTDEEITLQIEYGLKKGYAWSVEYSDDP--HPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
YW M+ +PMF D++ +L E+ C+K +P+ YIR +AF++ + + MSF++ +P+T
Sbjct: 53 YWEMYGMPMFDLQDAAGVLMELNNCRKTFPSHYIRLMAFDSTRGVESIAMSFIVNRPST 111
>gi|317969560|ref|ZP_07970950.1| ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
CB0205]
Length = 113
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSRSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D S I+NE++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLSVIVNELEACHRAYPDHHVRLVGYDAYTQSQGACFVV 109
>gi|261855528|ref|YP_003262811.1| ribulose-bisphosphate carboxylase [Halothiobacillus neapolitanus
c2]
gi|1172871|sp|P45686.1|RBS_HALNC RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|66360130|pdb|1SVD|M Chain M, The Structure Of Halothiobacillus Neapolitanus Rubisco
gi|3449367|gb|AAC32550.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Halothiobacillus neapolitanus c2]
gi|261835997|gb|ACX95764.1| Ribulose-bisphosphate carboxylase [Halothiobacillus neapolitanus
c2]
Length = 110
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
K+E SYLP ++ + I +I Y + +GW P +E EV +NS +YW MWK
Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEV-----KNSM------NQYWYMWK 60
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
LP FG + +L EI+ C+ AYP ++ +A++N Q ++F++ +
Sbjct: 61 LPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108
>gi|51210007|ref|YP_063671.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gracilaria tenuistipitata var. liui]
gi|50657761|gb|AAT79746.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Gracilaria tenuistipitata var. liui]
Length = 138
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+DD I K+I+Y + + W +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDDQINKQIEYAISQKWSVSIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKP 166
F D++ +L EI C+K YPN YI+ AF+N + + +SF++ +P
Sbjct: 56 FDLKDAATVLFEINSCRKQYPNLYIKLNAFDNTRGTESCVLSFIVNRP 103
>gi|294676135|ref|YP_003576750.1| ribulose bisphosphate carboxylase small subunit [Rhodobacter
capsulatus SB 1003]
gi|3183155|sp|O32741.1|RBS_RHOCA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|2522276|gb|AAC37142.1| ribulose bisphosphate carboxylase/oxygenase small subunit
[Rhodobacter capsulatus]
gi|294474955|gb|ADE84343.1| ribulose bisphosphate carboxylase, small subunit [Rhodobacter
capsulatus SB 1003]
Length = 118
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
++K SYLP + + I +++++++K GW P +E E P + YW M
Sbjct: 16 SRKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIEHTE-----------PDFAAQIYWYM 64
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTT 169
WKLPMFG D IL E++ C +A P ++R + ++N Q Q + ++ + T
Sbjct: 65 WKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118
>gi|339759470|dbj|BAK52373.1| ribulose 1,5-bisphosphate carboxylase oxygenase small subunit
protein [Eleusine coracana]
Length = 44
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 95 GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 137
G+V+REN+ PGYYDGRYWTMWKLPMFGC D++Q+L E++E K
Sbjct: 1 GFVYRENASSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEVK 43
>gi|132084|sp|P27998.1|RBS1_RHOSH RecName: Full=Ribulose bisphosphate carboxylase small chain 1;
Short=RuBisCO small subunit 1
gi|151925|gb|AAA26116.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Rhodobacter sphaeroides]
Length = 129
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ ++DY L +GW LE + H N+ YW MW +PMF
Sbjct: 8 FSFLPDLTDEQISAQVDYCLGRGWAVSLEHTDDP--HPRNT---------YWEMWGMPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D ++ E+ EC+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRPEVEPS 108
>gi|318040999|ref|ZP_07972955.1| ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
CB0101]
Length = 113
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSRSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCM 159
P FG D S I+NE++ C +AYP+ ++R + ++ Q QG C
Sbjct: 65 PFFGEKDLSVIVNELEACHRAYPDHHVRLVGYDAYTQSQGSCF 107
>gi|115523383|ref|YP_780294.1| ribulose-bisphosphate carboxylase form I small subunit
[Rhodopseudomonas palustris BisA53]
gi|115517330|gb|ABJ05314.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Rhodopseudomonas palustris BisA53]
Length = 141
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD IA ++ Y L KGW +EF + H N+ +W MW LPMF
Sbjct: 8 FSFLPDLTDDQIAAQVQYALGKGWAVNIEFTDD--PHPRNT---------FWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ +L E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLQDAAGVLMELNECRKIYGDRYIRLSAFDSSHGWESVRLSFIVNRP 103
>gi|456357410|dbj|BAM91855.1| ribulose bisphosphate carboxylase small chain, RuBisCO small
subunit [Agromonas oligotrophica S58]
Length = 139
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y L+KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITAQIQYCLEKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ I+ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMRELSECRKIYGDRYIRISAFDSSHGWESIRLSFIVNRP 103
>gi|367478430|ref|ZP_09477741.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. ORS 285]
gi|365269315|emb|CCD90209.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. ORS 285]
Length = 139
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y L+KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITAQIQYCLEKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ I+ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMRELAECRKIYGDRYIRISAFDSSHGWESIRLSFIVNRP 103
>gi|392375214|ref|YP_003207047.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Candidatus Methylomirabilis oxyfera]
gi|258592907|emb|CBE69216.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Candidatus Methylomirabilis oxyfera]
Length = 140
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+L L+DD I K+++Y L W +EF + H N+ +W MW LPMF
Sbjct: 8 FSFLADLTDDQIRKQVEYALNNKWAVSVEFTDDP--HPRNT---------FWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D + ++ EI C+KAYPN YI+ AF++ K + +SF+I +P
Sbjct: 57 DLEDPAGVMYEIDACRKAYPNHYIKVNAFDHNKGWETIRLSFIIHRP 103
>gi|154238355|emb|CAO82079.1| ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) small
subunit [Thiomonas sp. 3As]
Length = 98
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTM 115
KK+E SYLP ++ + + ++I Y + +GW P +E E G R + +W M
Sbjct: 4 TKKYETFSYLPQMTPEQVRRQIAYTIAQGWNPAVEHTEKGTSARVS----------FWYM 53
Query: 116 WKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMS 160
WKLP+FG +L E++ C + +P+ +R +A++N Q Q ++
Sbjct: 54 WKLPLFGEQSVDAVLAELEACHREFPDHMVRFVAYDNYAQSQGLA 98
>gi|186471254|ref|YP_001862572.1| ribulose-bisphosphate carboxylase [Burkholderia phymatum STM815]
gi|184197563|gb|ACC75526.1| Ribulose-bisphosphate carboxylase [Burkholderia phymatum STM815]
Length = 153
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDDEIGLQIQYALDQGWACSVEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
D++ ++ E+ C++AYP Y++ AF++ + + M SF++ +P
Sbjct: 57 DLRDAAGVMMEVARCREAYPQHYVKVNAFDSVRGFETMRLSFIVNRP 103
>gi|126165876|ref|NP_045135.2| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cyanidium caldarium]
gi|585792|sp|P37394.1|RBS_CYACA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|13620163|emb|CAA79822.2| ribulose bisphosphate carboxylase [Cyanidium caldarium]
Length = 138
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L++D I K+I Y + KGW +E+ + H NS YW MW LP+F
Sbjct: 8 FSFLPDLTNDQIRKQIQYAINKGWALSVEYTDDP--HPRNS---------YWEMWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + I+ E++ C+K N YI+ LAF++ K + MSF++ +P
Sbjct: 57 DVKDPAAIMFEVEACRKEKSNYYIKLLAFDSTKGVESTAMSFMVNRP 103
>gi|390565927|ref|ZP_10246488.1| Ribulose bisphosphate carboxylase, small subunit [Nitrolancetus
hollandicus Lb]
gi|390170822|emb|CCF85828.1| Ribulose bisphosphate carboxylase, small subunit [Nitrolancetus
hollandicus Lb]
Length = 140
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP +D+ I +I Y L + W +EF + H N YW MW LPMF
Sbjct: 8 FSYLPPFTDEQIKAQIQYALDQDWPCSVEFTDDP--HPRNI---------YWDMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D+S +L E+ C++AYPN Y+R A++ +Q +SF++Q+P
Sbjct: 57 DLKDASGVLYEVNRCREAYPNHYVRVTAYDRSLGQQTTRLSFIVQRP 103
>gi|316935266|ref|YP_004110248.1| ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris DX-1]
gi|315602980|gb|ADU45515.1| Ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris DX-1]
Length = 140
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ IA ++ Y L KGW LEF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQIAAQVQYALSKGWAVNLEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLQDAAGVMMELNECRKIYGDRYIRLSAFDSSHGWESVRLSFIVNRP 103
>gi|39934630|ref|NP_946906.1| ribulose-bisphosphate carboxylase small chain [Rhodopseudomonas
palustris CGA009]
gi|192290146|ref|YP_001990751.1| ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris
TIE-1]
gi|39648479|emb|CAE27001.1| ribulose-bisphosphate carboxylase small chain [Rhodopseudomonas
palustris CGA009]
gi|192283895|gb|ACF00276.1| Ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris
TIE-1]
Length = 140
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ IA ++ Y L KGW LEF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQIAAQVQYALSKGWAVNLEFTDD--PHPRNT---------YWDMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLQDAAGVMMELNECRKIYGDRYIRLSAFDSSHGWESVRLSFIVNRP 103
>gi|390566891|ref|ZP_10247244.1| ribulose-bisphosphate carboxylase [Burkholderia terrae BS001]
gi|420255214|ref|ZP_14758158.1| ribulose bisphosphate carboxylase small subunit [Burkholderia sp.
BT03]
gi|389941275|gb|EIN03051.1| ribulose-bisphosphate carboxylase [Burkholderia terrae BS001]
gi|398046366|gb|EJL38983.1| ribulose bisphosphate carboxylase small subunit [Burkholderia sp.
BT03]
Length = 133
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDEIRMQIQYALSEGWSCSVEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
D++ ++ E+ C++AYP YI+ AF++ + + M SF++ +P
Sbjct: 57 DLRDAAGVMMEVTRCREAYPQHYIKVNAFDSVRGFETMRLSFIVNRP 103
>gi|331699965|ref|YP_004336204.1| ribulose-bisphosphate carboxylase [Pseudonocardia dioxanivorans
CB1190]
gi|326954654|gb|AEA28351.1| Ribulose-bisphosphate carboxylase [Pseudonocardia dioxanivorans
CB1190]
Length = 141
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP +D+ I +I+Y L W +EF + H N+ YW MW LPMF
Sbjct: 8 FSYLPDFTDEEITAQINYALTNDWPLSVEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + +L E+ C+ A PNAY+R A++ +Q +SF++Q+P
Sbjct: 57 DLRDPAGVLMEVNACRAANPNAYVRLNAYDASLGRQTTALSFIVQRP 103
>gi|86751071|ref|YP_487567.1| ribulose-bisphosphate carboxylase form I small subunit CbbS
[Rhodopseudomonas palustris HaA2]
gi|86574099|gb|ABD08656.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Rhodopseudomonas palustris HaA2]
Length = 140
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ I+ ++ Y L KGW LEF + H N+ YW MW LPMF
Sbjct: 8 FSYLPDLTDEQISAQVQYALGKGWAVNLEFTDD--PHPRNT---------YWDMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLQDAAGVMLELAECRKVYGDRYIRMSAFDSSHGWESVRLSFIVNRP 103
>gi|456061997|ref|YP_007476241.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pavlova lutheri]
gi|449327184|gb|AGE93740.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pavlova lutheri]
Length = 139
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A SYLP L+D I K+ + ++KGW +E+ + H N+ YW MW LP+
Sbjct: 7 AFSYLPDLTDAQIQKQASFAIQKGWAISVEYTDDP--HPRNA---------YWEMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + ++ EI C+KA+ N Y++ AF+N + + +SF++ +P+
Sbjct: 56 FDIKDVAAVMFEINACRKAHSNFYVKVTAFDNTRGVESSALSFIVNRPS 104
>gi|34393787|dbj|BAC84936.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra umbilicalis]
gi|378787266|gb|AFC39897.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra umbilicalis]
Length = 138
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I K++ Y++ +GW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDQQINKQLAYIVSRGWSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA P+ Y++ AF+N + + CMSF++ +P
Sbjct: 57 DVKDASAVMYEINSCRKAKPSYYVKVNAFDNTRGVESCCMSFIVNRP 103
>gi|403225164|gb|AFR24776.1| ribulose bisphosphate carboxlyase small chain [uncultured
Pelagomonas]
Length = 139
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K+++Y + KGW +E+ + H N+ YW MW LP+
Sbjct: 7 AFSFLPDLTDEQITKQVEYAMSKGWAINIEWTDDP--HPRNT---------YWDMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
F C D+S ++ E+ EC+K P YI+ AF+ + +SF++ +P +
Sbjct: 56 FDCKDASAVMYELNECRKLNPEGYIKVQAFDATIGTESCVLSFIVNRPAS 105
>gi|312112803|ref|YP_004010399.1| ribulose-bisphosphate carboxylase [Rhodomicrobium vannielii ATCC
17100]
gi|311217932|gb|ADP69300.1| Ribulose-bisphosphate carboxylase [Rhodomicrobium vannielii ATCC
17100]
Length = 140
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ IAK++ Y ++KGW +EF + H NS YW MW LPMF
Sbjct: 8 FSFLPDLTDEQIAKQVQYAIEKGWAVNIEFTDDP--HPRNS---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNA-YIRCLAFNNQK--QGQCMSFLIQKPT 167
D++ +++E+Q C+K Y YIR AF+ + MSF++ +P
Sbjct: 57 DIKDAAAVVSELQACRKVYSGRYYIRISAFDATHGWESLRMSFIVDRPA 105
>gi|427701353|ref|YP_007044575.1| ribulose bisphosphate carboxylase small subunit [Cyanobium gracile
PCC 6307]
gi|427344521|gb|AFY27234.1| ribulose bisphosphate carboxylase small subunit [Cyanobium gracile
PCC 6307]
Length = 113
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSRSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D I+NE++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLGVIVNELESCHRAYPDHHVRLVGYDAYTQSQGACFVV 109
>gi|19919152|gb|AAM08169.1|AF346215_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion callocladum]
Length = 130
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I+Y + KGW +E+ E H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQIEYAISKGWAINIEYTEDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D++ +++E+ C+KA+ + YI+ AF+N + + +SFL+ +P+
Sbjct: 57 DIKDTATVMDEVASCRKAHSSIYIKINAFDNTRGVESCVLSFLVNRPS 104
>gi|33863474|ref|NP_895034.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9313]
gi|33640923|emb|CAE21379.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9313]
Length = 113
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPVIE-----HVHPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q +F++
Sbjct: 65 PFFGEKDLNMVVSELEACHRAYPDHHVRMVGYDAYTQSQGTAFVV 109
>gi|224552871|gb|ACN54674.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
Length = 138
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG+ +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSKGFSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
G D+S ++ EI C+KA PN YI+ AF+N + + +SF++ +P
Sbjct: 57 GVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVLSFIVNRP 103
>gi|124022518|ref|YP_001016825.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9303]
gi|123962804|gb|ABM77560.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9303]
Length = 113
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPVIE-----HVHPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q +F++
Sbjct: 65 PFFGEKDLNAVVSELEACHRAYPDHHVRMVGYDAYTQSQGTAFVV 109
>gi|77464858|ref|YP_354362.1| ribulose 1,5-bisphosphate carboxylase small subunit [Rhodobacter
sphaeroides 2.4.1]
gi|126463700|ref|YP_001044814.1| ribulose-bisphosphate carboxylase [Rhodobacter sphaeroides ATCC
17029]
gi|221640779|ref|YP_002527041.1| Ribulose bisphosphate carboxylase small chain 1 [Rhodobacter
sphaeroides KD131]
gi|332559756|ref|ZP_08414078.1| ribulose-bisphosphate carboxylase [Rhodobacter sphaeroides WS8N]
gi|429207426|ref|ZP_19198685.1| Ribulose bisphosphate carboxylase small chain [Rhodobacter sp.
AKP1]
gi|77389276|gb|ABA80461.1| ribulose 1,5-bisphosphate carboxylase small subunit [Rhodobacter
sphaeroides 2.4.1]
gi|126105364|gb|ABN78042.1| ribulose 1,5-bisphosphate carboxylase small subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221161560|gb|ACM02540.1| Ribulose bisphosphate carboxylase small chain 1 [Rhodobacter
sphaeroides KD131]
gi|332277468|gb|EGJ22783.1| ribulose-bisphosphate carboxylase [Rhodobacter sphaeroides WS8N]
gi|428189801|gb|EKX58354.1| Ribulose bisphosphate carboxylase small chain [Rhodobacter sp.
AKP1]
Length = 129
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I+ ++DY L +GW LE + H N+ YW MW +PMF
Sbjct: 8 FSFLPDLTDAQISAQVDYCLGRGWAVSLEHTDDP--HPRNT---------YWEMWGMPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D ++ E+ EC+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRPEVEPS 108
>gi|33866249|ref|NP_897808.1| ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
WH 8102]
gi|87123945|ref|ZP_01079795.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
RS9917]
gi|88807728|ref|ZP_01123240.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
WH 7805]
gi|116075360|ref|ZP_01472620.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
RS9916]
gi|148239015|ref|YP_001224402.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
WH 7803]
gi|260434862|ref|ZP_05788832.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
WH 8109]
gi|61230206|sp|P0A4S5.1|RBS_SYNPX RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|61230207|sp|P0A4S6.1|RBS_SYNPW RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|1850940|gb|AAB48081.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Synechococcus sp.]
gi|33639224|emb|CAE08232.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
WH 8102]
gi|82799255|gb|ABB92182.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small chain
[uncultured marine type-A Synechococcus 4O4]
gi|82799301|gb|ABB92227.1| ribulose bisphosphate carboxylase small chain [uncultured marine
type-A Synechococcus 5B2]
gi|86168514|gb|EAQ69771.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
RS9917]
gi|88788942|gb|EAR20097.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
WH 7805]
gi|90655467|gb|ABD96307.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured marine type-A Synechococcus GOM 3O6]
gi|90655516|gb|ABD96355.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured marine type-A Synechococcus GOM 3O12]
gi|90655552|gb|ABD96390.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured marine type-A Synechococcus GOM 4N23]
gi|90655624|gb|ABD96460.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured marine type-A Synechococcus GOM 5D20]
gi|116067557|gb|EAU73311.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
RS9916]
gi|147847554|emb|CAK23105.1| Ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
WH 7803]
gi|260412736|gb|EEX06032.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp.
WH 8109]
Length = 113
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFVV 109
>gi|124267968|ref|YP_001021972.1| ribulose 1,5-bisphosphate carboxylase small subunit [Methylibium
petroleiphilum PM1]
gi|124260743|gb|ABM95737.1| ribulose 1,5-bisphosphate carboxylase small subunit [Methylibium
petroleiphilum PM1]
Length = 139
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I++++ Y L KGW LE+ + H N+ YW M+ PMF
Sbjct: 8 FSFLPDLSDEQISRQVSYCLDKGWAIGLEYTDDP--HPRNT---------YWEMFGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D++ ++ E++ C+K +PN YIR AF++ + +SF+I +P+
Sbjct: 57 DVQDAAGVMLEVKSCRKTFPNHYIRLTAFDSSHGTESVVLSFIINRPS 104
>gi|148241919|ref|YP_001227076.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
RCC307]
gi|147850229|emb|CAK27723.1| Ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
RCC307]
Length = 113
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLIE-----HVHPSNSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCM 159
P FG D + I++E++ C +AYP+ ++R + ++ Q QG C
Sbjct: 65 PFFGEKDLNLIVSELEACHRAYPDHHVRMVGYDAYTQSQGSCF 107
>gi|90655412|gb|ABD96253.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured marine type-A Synechococcus GOM 3M9]
gi|90655585|gb|ABD96422.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[uncultured marine type-A Synechococcus GOM 4P21]
Length = 113
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 60 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 119
E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKLP
Sbjct: 17 ETFGFLPPMTQDEIFDQIAYIIAQGWSPLIE-----HVHPSNSM------ASYWSYWKLP 65
Query: 120 MFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCM 159
FG D + +++E++ C +AYP+ ++R + ++ Q QG C
Sbjct: 66 FFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGSCF 107
>gi|19457|emb|CAA38342.1| ribulose bisphosphate carboxylase [Larix laricina]
Length = 39
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 35/39 (89%)
Query: 108 YDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIR 146
YDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR
Sbjct: 1 YDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIR 39
>gi|92109258|ref|YP_571546.1| ribulose bisphosphate carboxylase, small chain [Nitrobacter
hamburgensis X14]
gi|92119205|ref|YP_578934.1| ribulose-bisphosphate carboxylase [Nitrobacter hamburgensis X14]
gi|91802099|gb|ABE64474.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrobacter
hamburgensis X14]
gi|91802340|gb|ABE64714.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrobacter
hamburgensis X14]
Length = 141
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+K+I Y L +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQISKQIQYCLTQGWAVNIEFTDDP--HPRNT---------YWDMWNLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ +L E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLKDAAGVLMELNECRKVYGDRYIRMSAFDSSHGWESVKISFIVNRP 103
>gi|324999044|ref|ZP_08120156.1| ribulose-bisphosphate carboxylase [Pseudonocardia sp. P1]
Length = 152
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I + L GW +EF + H N+ YW MW +PMF
Sbjct: 8 FSFLPDLTDDEITAQIGWALDHGWPCAVEFTDD--PHPRNT---------YWEMWGMPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + +L EI C++ +P Y+R A++ +Q +SFL+Q+P+
Sbjct: 57 DLADPAGVLAEIDACRREHPENYVRVNAYDASLGRQTVALSFLVQRPS 104
>gi|148254106|ref|YP_001238691.1| ribulose 1,5-bisphosphate carboxylase small subunit [Bradyrhizobium
sp. BTAi1]
gi|146406279|gb|ABQ34785.1| ribulose 1,5-bisphosphate carboxylase small subunit [Bradyrhizobium
sp. BTAi1]
Length = 113
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
++ E SYLP ++ D + K I Y++ + W P +E E P +W +W
Sbjct: 12 RRGETFSYLPPMTQDRLRKNIAYLISQNWNPAIEHTE-----------PEKSMSSFWYLW 60
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167
KLPMFG +IL E++ C +A P ++R + ++N Q Q +F++ + +
Sbjct: 61 KLPMFGERSIERILGELEACHRANPGQHVRLIGYDNYAQSQGTAFIVYRAS 111
>gi|2781431|gb|AAB97165.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Phaseolus vulgaris]
Length = 101
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 6 FTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYL 65
AP G LG P+ K + + I + +NG + +C++ W + KKFE LSYL
Sbjct: 23 MVAPFTGLKSLGGFPSRK----MNNDI---TSVANNGGRVQCIQVWPTVGKKKFETLSYL 75
Query: 66 PSLSDDSIAKEIDYMLKKGWIPCLEF 91
P L+ +AKE+DY+L+KGW+PCLEF
Sbjct: 76 PPLTKQQLAKEVDYLLRKGWVPCLEF 101
>gi|215400782|ref|YP_002327543.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Vaucheria litorea]
gi|10716878|gb|AAG21944.1|AF207527_2 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Vaucheria litorea]
gi|194441232|gb|ACF70960.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Vaucheria litorea]
Length = 139
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K+I+Y + KGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQIEYAVNKGWAISIEWSDDP--HPRNT---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
DSS +L EI EC++ P Y++ AF+ + MSF++Q+P
Sbjct: 57 DIKDSSAVLYEITECRRVNPEGYMKINAFDASIGTESCVMSFIVQRP 103
>gi|365888343|ref|ZP_09427119.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. STM 3809]
gi|365336008|emb|CCD99650.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. STM 3809]
Length = 113
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
++ E SYLP ++ D + + I Y++ + W P +E E P +W +W
Sbjct: 12 RRGETFSYLPPMTPDRLRRNIAYLIAQNWNPAIEHTE-----------PEKSMSSFWYLW 60
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLP+FG +IL E++ C +A P ++R + ++N Q Q M+F++ +
Sbjct: 61 KLPLFGERSIERILGELEACHRANPGHHVRLIGYDNYAQSQGMAFIVYR 109
>gi|19919148|gb|AAM08167.1|AF346213_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion callocladum]
gi|19919150|gb|AAM08168.1|AF346214_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion callocladum]
Length = 130
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I+Y + KGW +E+ E H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQIEYAISKGWAINIEYTEDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D++ ++ E+ C+KA+ + YI+ AF+N + + +SFLI +P+
Sbjct: 57 DIKDTAGVMQEVANCRKAHSSIYIKINAFDNTRGVESCVLSFLINRPS 104
>gi|378763869|ref|YP_005192485.1| putative ribulose-bisphosphate carboxylase small chain
[Sinorhizobium fredii HH103]
gi|365183497|emb|CCF00346.1| putative ribulose-bisphosphate carboxylase small chain
[Sinorhizobium fredii HH103]
Length = 129
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLSDEQITAQVEYCLGKGWAIGVEYTDD--PHPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+ +L E+++C+KA+P YIR AF++ + + MSF++ +P
Sbjct: 57 DLRDAKGVLMELEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRP 103
>gi|6137327|pdb|1BXN|I Chain I, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
gi|6137329|pdb|1BXN|J Chain J, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
gi|6137331|pdb|1BXN|K Chain K, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
gi|6137333|pdb|1BXN|L Chain L, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms
Length = 139
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y L +GW LE+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|148259836|ref|YP_001233963.1| ribulose-bisphosphate carboxylase [Acidiphilium cryptum JF-5]
gi|326403236|ref|YP_004283317.1| ribulose bisphosphate carboxylase small chain [Acidiphilium
multivorum AIU301]
gi|338983532|ref|ZP_08632717.1| Ribulose-bisphosphate carboxylase [Acidiphilium sp. PM]
gi|146401517|gb|ABQ30044.1| ribulose 1,5-bisphosphate carboxylase small subunit [Acidiphilium
cryptum JF-5]
gi|325050097|dbj|BAJ80435.1| ribulose bisphosphate carboxylase small chain [Acidiphilium
multivorum AIU301]
gi|338207523|gb|EGO95475.1| Ribulose-bisphosphate carboxylase [Acidiphilium sp. PM]
Length = 142
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+++I Y L KGW LE+ + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQISRQIQYCLDKGWAVNLEYTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCMSFLIQKP 166
D+ I++E+ +C++ + + YIR AF+ N + +SF++Q+P
Sbjct: 57 DIRDAKAIMSELADCRRIHDDCYIRLSAFDATNTWESLRISFIVQRP 103
>gi|6093937|sp|P09658.2|RBSC_RALEU RecName: Full=Ribulose bisphosphate carboxylase small chain,
chromosomal; Short=RuBisCO small subunit
gi|3377786|gb|AAC28130.1| ribulose bisphosphate carboxylase small subunit (rcbS) [Cupriavidus
necator]
Length = 139
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y L +GW LE+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|194292439|ref|YP_002008346.1| ribulose bisphosphate carboxylase (rubisco), small subunit
[Cupriavidus taiwanensis LMG 19424]
gi|193226343|emb|CAQ72292.1| Ribulose bisphosphate carboxylase (RuBisCO), small subunit
[Cupriavidus taiwanensis LMG 19424]
Length = 139
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y L KGW +E+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPELTDEQITKQLEYCLNKGWAVGIEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILLEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|118591566|ref|ZP_01548963.1| putative ribulose-1,5-bisphosphate carboxylase small subunit
protein [Stappia aggregata IAM 12614]
gi|118435894|gb|EAV42538.1| putative ribulose-1,5-bisphosphate carboxylase small subunit
protein [Stappia aggregata IAM 12614]
Length = 129
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I+ +I+Y L++ W +EF H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDAQISAQIEYCLQQDWAIGVEF--TNDPHPRNT---------YWDMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
D+ ++ E+++C+KA+P+AYIR AF++++ + MSF++ +P
Sbjct: 57 DLRDAKGVMMELEDCRKAHPDAYIRINAFDDERGIESVKMSFIVNRPVA 105
>gi|358639817|dbj|BAL27113.1| ribulose bisphosphate carboxylase, small subunit [Azoarcus sp.
KH32C]
Length = 141
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D I+K+++Y L +GW +E+ + H N+ YW+MW PM
Sbjct: 7 AFSFLPDLTDAQISKQVEYCLAQGWAVSIEYTDDP--HPRNT---------YWSMWGNPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + ++ E+ EC+ A+P YIR AF++ + MSFL+ +P
Sbjct: 56 FDLADPAGVMVELAECRAAFPEYYIRINAFDSTHGWETMRMSFLVNRPA 104
>gi|339484583|ref|YP_004696369.1| ribulose bisphosphate carboxylase small chain [Nitrosomonas sp.
Is79A3]
gi|338806728|gb|AEJ02970.1| ribulose bisphosphate carboxylase small chain [Nitrosomonas sp.
Is79A3]
Length = 144
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP N S+LP L+D I+ ++ Y LK GW +E+ + H N+
Sbjct: 4 NPGNIVTQGQFSFLPPLTDKQISTQLKYALKNGWAIGIEYTDD--PHPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
YW M+ PMF D + IL EI C+K +PN YIR AFN+ + + MS+++ +P
Sbjct: 53 YWEMFGNPMFDLKDPAGILMEINSCRKTFPNHYIRVTAFNSTRGVESPTMSYIVNRP 109
>gi|390576813|ref|ZP_10256859.1| ribulose-bisphosphate carboxylase [Burkholderia terrae BS001]
gi|389931237|gb|EIM93319.1| ribulose-bisphosphate carboxylase [Burkholderia terrae BS001]
Length = 139
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y L KGW +E+ + H N+ +W M+ LPMF
Sbjct: 8 FSFLPDLTDEQIVKQLEYSLNKGWAVGVEYTDDP--HPRNT---------FWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ I+ EI +K +PN YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAAIMLEINNARKTFPNHYIRVTAFDSTHTVESVVISFIVHRP 103
>gi|132142|sp|P24395.1|RBS_ECTSI RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|11545|emb|CAA36744.1| unnamed protein product [Ectocarpus siliculosus]
Length = 139
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSDD I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDDQIKQQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D + ++ E+ EC+K P YI+ AF+ + MSF++Q+P T
Sbjct: 57 DVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPIT 105
>gi|90422839|ref|YP_531209.1| ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris
BisB18]
gi|90104853|gb|ABD86890.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Rhodopseudomonas palustris BisB18]
Length = 141
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I ++ Y L KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQITSQVQYALGKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ +L E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLQDAAGVLMELNECRKIYGDRYIRLSAFDSSPGWESVRLSFIVNRP 103
>gi|75226532|sp|Q760S4.1|RBS_PORCA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|34393775|dbj|BAC84928.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722314|dbj|BAF48560.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722317|dbj|BAF48562.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722320|dbj|BAF48564.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722323|dbj|BAF48566.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722326|dbj|BAF48568.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722329|dbj|BAF48570.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|126722332|dbj|BAF48572.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|384080984|dbj|BAM10936.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|384080987|dbj|BAM10938.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
gi|384080990|dbj|BAM10940.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia suborbiculata]
Length = 138
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+K++ Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQISKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN YI+ AF+N + + MSF++ +P
Sbjct: 57 DVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVMSFIVNRP 103
>gi|340028808|ref|ZP_08664871.1| ribulose-bisphosphate carboxylase [Paracoccus sp. TRP]
Length = 130
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-DEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I +++Y+L + W +EF DE H N+ YW MW PM
Sbjct: 8 FSFLPDLTDEQIRAQVEYILSREWAVGIEFTDEP---HPRNT---------YWEMWGNPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
F D+ ++ E+ EC+KA+ ++YIR AF+N + + MSF++ +P + S
Sbjct: 56 FDLKDAKGVMMELDECRKAHGDSYIRINAFDNTRGWETVMMSFIVNRPASEPS 108
>gi|6066598|emb|CAB58237.1| ribulose bisphosphate carboxylase, small subunit [Porphyridium
aerugineum]
Length = 138
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I K++ Y + K W +E+ + H NS +W +W LP+F
Sbjct: 8 FSFLPDLTDAQIQKQVQYAVSKKWAVSVEYTDDP--HPRNS---------FWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN YI+ AF+N + + C+SF+I +P
Sbjct: 57 DVKDASALMYEIAACRKAKPNYYIKVNAFDNTRGVESCCLSFIINRP 103
>gi|730479|sp|Q09125.1|RBS_PORAE RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
Length = 138
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I K++ Y + K W +E+ + H NS +W +W LP+F
Sbjct: 8 FSFLPDLTDAQIQKQVQYAVSKKWAVSVEYTDDP--HPRNS---------FWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN YI+ AF+N + + C+SF+I +P
Sbjct: 57 DVKDASALMYEIAACRKAKPNYYIKVNAFDNTRGVESCCLSFIINRP 103
>gi|27377697|ref|NP_769226.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Bradyrhizobium japonicum USDA 110]
gi|7388043|sp|Q9ZI33.1|RBS_BRAJA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|4160593|gb|AAD05387.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Bradyrhizobium japonicum]
gi|27350842|dbj|BAC47851.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Bradyrhizobium japonicum USDA 110]
Length = 134
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQIYKQVQYCLAKGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SFL+ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRISGFDSSPGWESVRISFLVNRP 103
>gi|75226530|sp|Q760R8.1|RBS_PORKA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|34393784|dbj|BAC84934.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia katadae]
Length = 138
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+
Sbjct: 7 AFSFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D+S ++ EI C+KA PN Y++ AF+N + + MSF++ +P
Sbjct: 56 FDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRPA 104
>gi|269101142|ref|YP_003289290.1| Ribulose bisphosphate carboxylase small subunit [Ectocarpus
siliculosus]
gi|266631650|emb|CAV31321.1| Ribulose bisphosphate carboxylase small subunit [Ectocarpus
siliculosus]
gi|270118780|emb|CAT18877.1| Ribulose bisphosphate carboxylase small subunit [Ectocarpus
siliculosus]
Length = 139
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSDD I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D + ++ E+ EC+K P YI+ AF+ + MSF++Q+P T
Sbjct: 57 DVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPIT 105
>gi|365884788|ref|ZP_09423816.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. ORS 375]
gi|365286574|emb|CCD96347.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. ORS 375]
Length = 139
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y L+K W +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITAQIQYCLEKNWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ I+ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMRELAECRKIYGDRYIRISAFDSSHGWESIRLSFIVNRP 103
>gi|254431910|ref|ZP_05045613.1| ribulose bisphosphate carboxylase, small subunit [Cyanobium sp. PCC
7001]
gi|197626363|gb|EDY38922.1| ribulose bisphosphate carboxylase, small subunit [Cyanobium sp. PCC
7001]
Length = 113
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLIE-----HVHPSRSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D I++E++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLGVIVSELEACHRAYPDHHVRLVGYDAYTQSQGACFVV 109
>gi|385203929|ref|ZP_10030799.1| ribulose bisphosphate carboxylase small subunit [Burkholderia sp.
Ch1-1]
gi|385183820|gb|EIF33094.1| ribulose bisphosphate carboxylase small subunit [Burkholderia sp.
Ch1-1]
Length = 142
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +IDY L +GW +E+ + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEIRLQIDYALSQGWACSVEYTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
D++ +L E++ C+ A P YI+ AF++ + + M SF++ +P
Sbjct: 57 DLRDAAGVLQEVKACRAAQPQHYIKVNAFDSVRGFETMRLSFIVNRP 103
>gi|91777681|ref|YP_552889.1| ribulose 1,5-bisphosphate carboxylase small subunit [Burkholderia
xenovorans LB400]
gi|91690341|gb|ABE33539.1| ribulose 1,5-bisphosphate carboxylase small subunit [Burkholderia
xenovorans LB400]
Length = 142
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +IDY L +GW +E+ + H N+ YW MW LPMF
Sbjct: 8 FSFLPELTDEEIRLQIDYALSQGWACSVEYTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
D++ +L E++ C+ A P YI+ AF++ + + M SF++ +P
Sbjct: 57 DLRDAAGVLQEVKACRAAQPQHYIKVNAFDSVRGFETMRLSFIVNRP 103
>gi|24559827|gb|AAN61149.1| CbbS [Bradyrhizobium japonicum]
Length = 134
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQIYKQVRYCLAKGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SFL+ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRISGFDSSPGWESVRISFLVNRP 103
>gi|359790449|ref|ZP_09293348.1| ribulose-bisphosphate carboxylase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253603|gb|EHK56710.1| ribulose-bisphosphate carboxylase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 144
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP N S+LP L+D I+ +I Y LK W +E+ + H N+
Sbjct: 4 NPGNKVTQGQFSFLPDLTDTQISAQIKYALKNNWAVSVEYSDD--PHPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
YW M+ PMF D + IL E+ C+KA PN YIR AF++ K + MSF++ +P
Sbjct: 53 YWEMYGNPMFDLKDPAGILMEVNACRKALPNMYIRVTAFDSSKGWEAPRMSFIVNRP 109
>gi|421604988|ref|ZP_16046990.1| ribulose-bisphosphate carboxylase [Bradyrhizobium sp. CCGE-LA001]
gi|404262902|gb|EJZ28580.1| ribulose-bisphosphate carboxylase [Bradyrhizobium sp. CCGE-LA001]
Length = 135
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITKQVQYCLANGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SFL+ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRISGFDSSHGWESVRISFLVNRP 103
>gi|78778936|ref|YP_397048.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9312]
gi|123965850|ref|YP_001010931.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9515]
gi|123968142|ref|YP_001009000.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. AS9601]
gi|157412967|ref|YP_001483833.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9215]
gi|78712435|gb|ABB49612.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Prochlorococcus marinus str. MIT 9312]
gi|123198252|gb|ABM69893.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. AS9601]
gi|123200216|gb|ABM71824.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9515]
gi|157387542|gb|ABV50247.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9215]
Length = 113
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ + I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQEEIYDQIAYIIAQGWSPVIE-----HVHPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q +F++
Sbjct: 65 PFFGEKDLNLVVSELEACHRAYPDHHVRIIGYDAYTQSQGTAFVV 109
>gi|257221082|gb|ACV52351.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dictyopteris repens]
Length = 134
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQITSQVNYAISKGWAISIEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPT 167
DS+ +L E+ +C++ P YI+ AF+ K + +SF++Q+PT
Sbjct: 57 DIKDSAAVLYELNQCRRVNPEGYIKINAFDASKGTESCALSFIVQRPT 104
>gi|379709438|ref|YP_005264643.1| ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Nocardia cyriacigeorgica GUH-2]
gi|374846937|emb|CCF64007.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Nocardia cyriacigeorgica GUH-2]
Length = 140
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWK 117
+ A SYLP L+D I ++ Y L W +E+ + H N+ YW MW
Sbjct: 4 RHGAFSYLPDLTDAEIGAQVRYALLNNWPVSIEYTDDP--HPRNA---------YWEMWG 52
Query: 118 LPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
LP+F ++ +L EI C+ +P Y+R LA++ +Q +SFL+Q+P+
Sbjct: 53 LPLFDLDEPDGVLAEINACRATFPRHYVRVLAYDASYGRQTTALSFLVQRPS 104
>gi|194477349|ref|YP_002049528.1| Ribulose bisphosphate carboxylase, small chain [Paulinella
chromatophora]
gi|151335807|gb|ABS00402.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Paulinella chromatophora]
gi|171192356|gb|ACB43318.1| Ribulose bisphosphate carboxylase, small chain [Paulinella
chromatophora]
Length = 113
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPVVE-----HVHPSRSM------AIYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D I++E++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLGVIVSELEACHRAYPDHHVRLVGYDAYTQSQGACFVV 109
>gi|87302501|ref|ZP_01085318.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
WH 5701]
gi|87282845|gb|EAQ74802.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp.
WH 5701]
Length = 113
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSRSM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCM 159
P FG D I++E++ C +AYP+ ++R + ++ Q QG C
Sbjct: 65 PFFGEKDLGVIVSELEACHRAYPDHHVRLVGYDAYTQSQGSCF 107
>gi|407724087|ref|YP_006843748.1| ribulose-1,5-bisphosphate carboxylase small subunit protein
[Sinorhizobium meliloti Rm41]
gi|407324147|emb|CCM72748.1| ribulose-1,5-bisphosphate carboxylase small subunit protein
[Sinorhizobium meliloti Rm41]
Length = 129
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGKGWAIGVEYTDDP--HPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D+ ++ E+++C+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLKDAKGVMMEVEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRPENEPS 108
>gi|418400993|ref|ZP_12974528.1| ribulose-bisphosphate carboxylase [Sinorhizobium meliloti
CCNWSX0020]
gi|359505100|gb|EHK77627.1| ribulose-bisphosphate carboxylase [Sinorhizobium meliloti
CCNWSX0020]
Length = 129
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGKGWAIGVEYTDDP--HPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D+ ++ E+++C+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLKDAKGVMMEVEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRPENEPS 108
>gi|159903094|ref|YP_001550438.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9211]
gi|159888270|gb|ABX08484.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9211]
Length = 113
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPVIE-----HVHPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLNVVVSELEACHRAYPDHHVRMVGYDAYTQSQGTCFVV 109
>gi|339627076|ref|YP_004718719.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sulfobacillus acidophilus TPY]
gi|379008541|ref|YP_005257992.1| ribulose 1,5-bisphosphate carboxylase small subunit [Sulfobacillus
acidophilus DSM 10332]
gi|119964672|gb|ABM17101.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sulfobacillus acidophilus DSM 10332]
gi|339284865|gb|AEJ38976.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sulfobacillus acidophilus TPY]
gi|361054803|gb|AEW06320.1| ribulose 1,5-bisphosphate carboxylase small subunit [Sulfobacillus
acidophilus DSM 10332]
Length = 140
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +I Y + GW +EF + H N W MW LPMF
Sbjct: 10 FSFLPPLNDDQIRAQIQYAINNGWAINIEFTDDP--HPRNF---------LWDMWGLPMF 58
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D + ++ E+ +CK+AYP+ YIR A+++ +Q +SF++ +P +
Sbjct: 59 DLQDPAAVMYELNQCKEAYPHHYIRINAYDSSLGRQTTALSFIVNRPPS 107
>gi|384539662|ref|YP_005723746.1| putative ribulose-1,5-bisphosphate carboxylase small subunit
protein [Sinorhizobium meliloti SM11]
gi|336038315|gb|AEH84245.1| putative ribulose-1,5-bisphosphate carboxylase small subunit
protein [Sinorhizobium meliloti SM11]
Length = 129
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGKGWAIGVEYTDDP--HPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D+ ++ E+++C+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLKDAKGVMMEVEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRPENEPS 108
>gi|383773635|ref|YP_005452701.1| ribulose bisphosphate carboxylase small chain [Bradyrhizobium sp.
S23321]
gi|381361759|dbj|BAL78589.1| ribulose bisphosphate carboxylase small chain [Bradyrhizobium sp.
S23321]
Length = 135
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITKQVQYCLANGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SFL+ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRISGFDSSHGWESVRISFLVNRP 103
>gi|37726896|gb|AAO39724.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion densum]
Length = 132
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+IDY + K W +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQITKQIDYAISKNWAINIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
F DS+ ++ E+ C+K++ + YI+ AF+N + + +SF+I +P
Sbjct: 56 FEIKDSATVMYEVNNCRKSHSSVYIKINAFDNTRGIESCVLSFIINRP 103
>gi|414164377|ref|ZP_11420624.1| ribulose bisphosphate carboxylase small chain [Afipia felis ATCC
53690]
gi|410882157|gb|EKS29997.1| ribulose bisphosphate carboxylase small chain [Afipia felis ATCC
53690]
Length = 141
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I Y L+K W +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQIKKQIQYCLEKDWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ I+ E+ EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMMELAECRKVYGDRYIRINAFDSSHGWESVRISFIVNRP 103
>gi|325983488|ref|YP_004295890.1| ribulose-bisphosphate carboxylase [Nitrosomonas sp. AL212]
gi|325533007|gb|ADZ27728.1| Ribulose-bisphosphate carboxylase [Nitrosomonas sp. AL212]
Length = 144
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I+ ++ Y LK GW +E+ + H N+ YW M+ PMF
Sbjct: 14 FSFLPPLTDKQISAQLKYALKNGWAIGIEYTDD--PHPRNT---------YWEMFGNPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + IL EI C+K +PN YIR AFN+ + + MS+++ +P
Sbjct: 63 DLKDPAGILLEINSCRKTFPNHYIRVTAFNSTRGVESPTMSYIVNRP 109
>gi|82701818|ref|YP_411384.1| ribulose-bisphosphate carboxylase [Nitrosospira multiformis ATCC
25196]
gi|82409883|gb|ABB73992.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrosospira
multiformis ATCC 25196]
Length = 144
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I+ +I Y LK W +E+ + H N+ YW M+ PMF
Sbjct: 14 FSFLPPLTDKQISAQIKYALKNNWAIGIEYTDDP--HPRNT---------YWEMFGNPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + IL EI +C+K YPN YIR AF++ + + MS+++ +P
Sbjct: 63 DLKDPAGILQEINDCRKTYPNHYIRVTAFDSSRGVESPAMSYIVNRP 109
>gi|58045366|gb|AAW64999.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dictyoneurum californicum]
Length = 117
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y +KKGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVNYAMKKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
DS+ ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDSAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|124266672|ref|YP_001020676.1| ribulose 1,5-bisphosphate carboxylase small subunit [Methylibium
petroleiphilum PM1]
gi|124259447|gb|ABM94441.1| ribulose 1,5-bisphosphate carboxylase small subunit [Methylibium
petroleiphilum PM1]
Length = 147
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP S+LP LSD I +I+Y L KG+ +E+ + H N+
Sbjct: 4 NPTGRLTQGQFSFLPDLSDAEITLQIEYGLGKGYAWSVEYTDD--PHPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
YW M+ PMF +D++ +L E+ C+K +PN YIR +AF++ + + MSF++ +P+
Sbjct: 53 YWEMYGNPMFDLHDAAGVLMELNHCRKTFPNHYIRLMAFDSTRGIESIAMSFIVNRPS 110
>gi|148252059|ref|YP_001236644.1| ribulose 1,5-bisphosphate carboxylase small subunit [Bradyrhizobium
sp. BTAi1]
gi|146404232|gb|ABQ32738.1| ribulose 1,5-bisphosphate carboxylase small subunit [Bradyrhizobium
sp. BTAi1]
Length = 139
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y L+KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQITKQVQYCLEKGWSVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ +C++ Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGVMMELAKCRRVYADRYIRLSAFDSSHGWESVRLSFIVNRP 103
>gi|150376072|ref|YP_001312668.1| ribulose-bisphosphate carboxylase [Sinorhizobium medicae WSM419]
gi|7388042|sp|P56890.1|RBS_SINMW RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|6694733|gb|AAF25380.1|AF211846_7 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sinorhizobium medicae WSM419]
gi|150030619|gb|ABR62735.1| Ribulose-bisphosphate carboxylase [Sinorhizobium medicae WSM419]
Length = 129
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L +GW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGRGWAIGVEYTDDP--HPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+ ++ E+++C+KA+P YIR AF++ + + MSF++ +P
Sbjct: 57 DLRDAKGVMMEVEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRP 103
>gi|730478|sp|Q08052.1|RBS_PLECA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|456607|dbj|BAA01915.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pleurochrysis carterae]
Length = 139
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D + K+I Y L K W +E+ + H NS YW MW LP+
Sbjct: 7 AFSFLPDLTDAQVTKQIQYALNKSWAISIEYTDDP--HPRNS---------YWEMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + IL EI +KA PN Y++ F+N + + +SF++Q+P+
Sbjct: 56 FDVKDPAAILFEINMARKAKPNYYLKIACFDNTRGIESCVLSFIVQRPS 104
>gi|78212298|ref|YP_381077.1| ribulose 1,5-bisphosphate carboxylase small subunit [Synechococcus
sp. CC9605]
gi|78196757|gb|ABB34522.1| Ribulose-bisphosphate carboxylase [Synechococcus sp. CC9605]
Length = 113
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +VH N YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNCM------ATYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFVV 109
>gi|146339299|ref|YP_001204347.1| ribulose bisphosphate carboxylase small chain [Bradyrhizobium sp.
ORS 278]
gi|146192105|emb|CAL76110.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. ORS 278]
Length = 113
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMW 116
++ E SYLP ++ D + + I Y++ + W P +E E P +W +W
Sbjct: 12 RRGETFSYLPPMTQDRLRRNIAYLIAQNWNPAIEHTE-----------PEKSMSSFWYLW 60
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQK 165
KLPMFG +IL E++ C + P ++R + ++N Q Q +F++ +
Sbjct: 61 KLPMFGERSIERILGELEACHRTNPGHHVRLIGYDNYSQSQGTAFIVYR 109
>gi|34393763|dbj|BAC84920.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia tenera]
gi|34393766|dbj|BAC84922.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia tenera]
gi|34393769|dbj|BAC84924.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia tenera]
gi|126722335|dbj|BAF48574.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia tenera]
gi|126722338|dbj|BAF48576.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia tenera]
Length = 138
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLSYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN Y++ AF+N + + MSF++ +P
Sbjct: 57 DVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
>gi|156145678|gb|ABU53652.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Griffithsia monilis]
Length = 138
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K++DY + + W +E+ E H N+ +W +W LP+
Sbjct: 7 TFSFLPDLTDEQIKKQVDYAISQNWAINIEYTEDP--HPRNN---------FWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F ND++ ++ EI C++ + N YI+ AF+N + + +SFLI +P+
Sbjct: 56 FDINDAATVMYEIGSCRQQHSNVYIKVNAFDNTRGVESCVLSFLINRPS 104
>gi|337739169|ref|YP_004638449.1| ribulose bisphosphate carboxylase small chain CbbS [Oligotropha
carboxidovorans OM5]
gi|386031695|ref|YP_005945988.1| ribulose bisphosphate carboxylase small chain CbbS [Oligotropha
carboxidovorans OM4]
gi|336096669|gb|AEI04494.1| ribulose bisphosphate carboxylase small chain CbbS [Oligotropha
carboxidovorans OM4]
gi|336100300|gb|AEI08122.1| ribulose bisphosphate carboxylase small chain CbbS [Oligotropha
carboxidovorans OM5]
Length = 141
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I Y L K W +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQIKKQIQYCLGKDWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ I+ E++EC+K Y + YIR AF++ + +SF++ +P
Sbjct: 57 DLRDAAGIMMELKECRKVYGDRYIRINAFDSSHGWESVRISFIVNRP 103
>gi|226731980|gb|ACO82062.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
Length = 138
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG+ +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSKGFSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN YI+ AF+N + + +SF++ +P
Sbjct: 57 DVKDTSAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVLSFIVNRP 103
>gi|126722341|dbj|BAF48578.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra tenuipedalis]
Length = 138
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN YI+ AF+N + + MSF++ +P
Sbjct: 57 DVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVMSFIVNRP 103
>gi|398821018|ref|ZP_10579511.1| ribulose bisphosphate carboxylase small subunit [Bradyrhizobium sp.
YR681]
gi|398228319|gb|EJN14448.1| ribulose bisphosphate carboxylase small subunit [Bradyrhizobium sp.
YR681]
Length = 135
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I +++ Y L GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITRQVQYCLANGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SFL+ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRISGFDSSHGWESVRISFLVNRP 103
>gi|374573858|ref|ZP_09646954.1| ribulose bisphosphate carboxylase small subunit [Bradyrhizobium sp.
WSM471]
gi|374422179|gb|EHR01712.1| ribulose bisphosphate carboxylase small subunit [Bradyrhizobium sp.
WSM471]
Length = 135
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITKQVQYCLTNGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SF++ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRLSGFDSSHDWESVRISFIVNRP 103
>gi|75226528|sp|Q760R4.1|RBS_PORHA RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|34393790|dbj|BAC84938.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia haitanensis]
gi|206557986|gb|ACI12859.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|206557988|gb|ACI12860.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|206557990|gb|ACI12861.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|206557992|gb|ACI12862.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|206557994|gb|ACI12863.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|222356661|gb|ACM48855.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|222356663|gb|ACM48856.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|222356665|gb|ACM48857.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|222356667|gb|ACM48858.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|224552867|gb|ACN54671.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|224552874|gb|ACN54676.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|224552877|gb|ACN54678.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|226731971|gb|ACO82056.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
gi|226731977|gb|ACO82060.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
Length = 138
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG+ +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSKGFSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN YI+ AF+N + + +SF++ +P
Sbjct: 57 DVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVLSFIVNRP 103
>gi|126722386|dbj|BAF48608.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN002]
gi|126722389|dbj|BAF48610.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN002]
gi|126722392|dbj|BAF48612.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN002]
gi|126722395|dbj|BAF48614.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN002]
gi|126722398|dbj|BAF48616.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN002]
Length = 138
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K++ Y++ +G +E+ + H NS YW +W LP+
Sbjct: 7 AFSFLPDLTDEQINKQLAYIVSQGLSANVEYTDDP--HPRNS---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D+S ++ EI C+KA PN Y++ AF+N + + MSF++ +P
Sbjct: 56 FDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRPA 104
>gi|75226533|sp|Q760S6.1|RBS_PORDE RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|34393772|dbj|BAC84926.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia dentata]
gi|126722266|dbj|BAF48528.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia dentata]
gi|126722269|dbj|BAF48530.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia dentata]
gi|126722272|dbj|BAF48532.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia dentata]
gi|126722401|dbj|BAF48618.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DE001]
gi|126722404|dbj|BAF48620.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DE001]
gi|126722407|dbj|BAF48622.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DE001]
Length = 138
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN Y++ AF+N + + MSF++ +P
Sbjct: 57 DVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
>gi|413924937|gb|AFW64869.1| ribulose bisphosphate carboxylase small subunit1 [Zea mays]
Length = 56
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 115 MWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 166
MWKLPMFGCND++Q+ E+QE K+YP+A+ R + F+N KQ QC+SF+ KP
Sbjct: 1 MWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 52
>gi|384533911|ref|YP_005716575.1| ribulose-bisphosphate carboxylase [Sinorhizobium meliloti BL225C]
gi|433611639|ref|YP_007195100.1| Ribulose bisphosphate carboxylase small subunit [Sinorhizobium
meliloti GR4]
gi|333816087|gb|AEG08754.1| Ribulose-bisphosphate carboxylase [Sinorhizobium meliloti BL225C]
gi|429556581|gb|AGA11501.1| Ribulose bisphosphate carboxylase small subunit [Sinorhizobium
meliloti GR4]
Length = 129
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGKGWAIGVEYTDD--PHPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D+ ++ E+++C+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLKDAKGVMMELEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRPENEPS 108
>gi|19919172|gb|AAM08179.1|AF346225_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnionella sp.]
Length = 130
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+IDY + + W +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIKKQIDYAISQNWAINIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D+ ++ E+ C+K Y N YI+ AF+N + + +SFL+ +P+
Sbjct: 56 FDIKDAQTVMYEMNSCRKQYSNLYIKVNAFDNTRGVESCVLSFLVNRPS 104
>gi|386397317|ref|ZP_10082095.1| ribulose bisphosphate carboxylase small subunit [Bradyrhizobium sp.
WSM1253]
gi|385737943|gb|EIG58139.1| ribulose bisphosphate carboxylase small subunit [Bradyrhizobium sp.
WSM1253]
Length = 135
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQITKQVQYCLTNGWAVNIEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SF++ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRLSGFDSSHGWESVRISFIVNRP 103
>gi|58045345|gb|AAW64985.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Chorda filum]
Length = 117
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K+++Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQITKQVNYAMTKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC++ P+ YI+ AF+ + MSF++Q+P
Sbjct: 57 DIKDPAAVMYELNECRRVNPDGYIKINAFDASIGTESCAMSFIVQRPV 104
>gi|33861108|ref|NP_892669.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33639840|emb|CAE19010.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 113
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ + I +I Y++ +GW P +E +VH S YW+ WKL
Sbjct: 16 LETFGFLPPMTQEEIYDQIAYIIAQGWSPVIE-----HVHPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q +F +
Sbjct: 65 PFFGEKDLNLVVSELEACHRAYPDHHVRIIGYDAYTQSQGTAFAV 109
>gi|410697686|gb|AFV76754.1| ribulose bisphosphate carboxylase small subunit [Thermus oshimai
JL-2]
Length = 143
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP L+D+ I +I+Y++K GW +E+ + P Y+ YW MW LPMF
Sbjct: 8 FSYLPDLTDEEIRLQIEYIIKNGWAVSIEY----------TDDPHPYNV-YWNMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ E Q+C++A+PN YI+ ++ Q Q +SF+ +P
Sbjct: 57 DLEDAAPAFYEFQKCREAFPNHYIKINGYDPSPMWQAQRVSFIAHRP 103
>gi|90994418|ref|YP_536908.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|75226535|sp|Q760T4.1|RBS_PORYE RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|34393757|dbj|BAC84916.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|34393760|dbj|BAC84918.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|34393793|dbj|BAC84940.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. SuSa 001]
gi|34393796|dbj|BAC84942.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|34393799|dbj|BAC84944.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|34393802|dbj|BAC84946.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|34393805|dbj|BAC84948.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|90818982|dbj|BAE92351.1| Ribulose bisphosphate carboxylase small chain [Pyropia yezoensis]
gi|126722344|dbj|BAF48580.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia yezoensis]
gi|126722347|dbj|BAF48582.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722350|dbj|BAF48584.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722353|dbj|BAF48586.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722356|dbj|BAF48588.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722359|dbj|BAF48590.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722362|dbj|BAF48592.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722365|dbj|BAF48594.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722368|dbj|BAF48596.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722371|dbj|BAF48598.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722374|dbj|BAF48600.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722377|dbj|BAF48602.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722380|dbj|BAF48604.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
gi|126722383|dbj|BAF48606.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra sp. DN001]
Length = 138
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S ++ EI C+KA PN Y++ AF+N + + MSF++ +P
Sbjct: 57 DVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
>gi|58045396|gb|AAW65019.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eisenia arborea]
Length = 117
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y +KKGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAIKKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D++ ++ E+ EC+K P YI+ AF+ + +SFL+Q+P+
Sbjct: 57 DIQDTAALMYELAECRKVNPEGYIKINAFDASIGTESCALSFLVQRPS 104
>gi|11465693|ref|NP_053837.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Porphyra purpurea]
gi|1710043|sp|P51227.1|RBS_PORPU RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|1276693|gb|AAC08113.1| Ribulose bisphosphate carboxylase small chain (chloroplast)
[Porphyra purpurea]
Length = 138
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D I K++ Y++ KGW +E+ + H N+ YW +W LP+
Sbjct: 7 AFSFLPDLTDQQINKQLAYIVSKGWSANVEYTDDP--HPRNA---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + ++ EI C+KA P+ Y++ AF+N + + MSF++ +P
Sbjct: 56 FDVKDPAAVMYEINSCRKAKPSYYVKVNAFDNTRGVESCSMSFIVNRPA 104
>gi|319783968|ref|YP_004143444.1| ribulose-bisphosphate carboxylase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169856|gb|ADV13394.1| Ribulose-bisphosphate carboxylase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 144
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 13/119 (10%)
Query: 52 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGR 111
NP N S+LP L+D+ I+ +I Y LK W +E+ + H N+
Sbjct: 4 NPGNKVTQGQFSFLPDLTDEQISAQIKYALKNHWAVSVEYTDD--PHPRNT--------- 52
Query: 112 YWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
YW M+ PMF D + IL E+ C+KA PN Y+R AF++ K + MSF++ +P +
Sbjct: 53 YWEMYGNPMFDLKDPAGILLEVNACRKACPNMYVRVTAFDSTKGWEAPRMSFIVNRPPS 111
>gi|436130|emb|CAA54082.1| ribulose-1,5-bisphosphate carboxylase [Physcomitrella patens]
Length = 77
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 38 TVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV 94
+V NGS+ +CM+ W P KFE LSYLP LS D IA+++DYM+++ IPC+EFD V
Sbjct: 22 SVQNGSRVQCMQVW-PHRQPKFETLSYLPPLSIDQIARQVDYMIQQNLIPCIEFDTV 77
>gi|328542607|ref|YP_004302716.1| Ribulose bisphosphate carboxylase small chain [Polymorphum gilvum
SL003B-26A1]
gi|326412352|gb|ADZ69415.1| Ribulose bisphosphate carboxylase small chain [Polymorphum gilvum
SL003B-26A1]
Length = 129
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I ++DY L W +EF H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQIVAQVDYCLGNDWAIGIEF--TYDPHPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ ++ E++EC+KA+P AYIR AF++ + + MSF+ +P
Sbjct: 57 DLKDAAGVMMELKECRKAHPEAYIRLNAFDSTRGFETVRMSFIANRP 103
>gi|75677109|ref|YP_319530.1| ribulose bisphosphate carboxylase, small chain [Nitrobacter
winogradskyi Nb-255]
gi|74421979|gb|ABA06178.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nitrobacter
winogradskyi Nb-255]
Length = 141
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I+++I Y L + W +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDDQISRQIQYCLSQNWAVNIEFTDDP--HPRNT---------YWEMWNLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ +L E++EC+K Y + YIR F++ + +SF++ +P
Sbjct: 57 DLPDAAGVLMELKECRKVYGDRYIRISGFDSSPGWESVKISFIVNRP 103
>gi|159488839|ref|XP_001702408.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2
[Chlamydomonas reinhardtii]
gi|158271076|gb|EDO96903.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2
[Chlamydomonas reinhardtii]
Length = 188
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENS 102
M W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++
Sbjct: 46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESA 102
>gi|157741866|gb|ABV69588.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit-1
[Mycobacterium sp. DSM 3803]
Length = 141
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
SYLP +D+ I +I+Y L W +EF + H N+ YW MW LPMF
Sbjct: 8 FSYLPDFTDEEITAQIEYALSNEWPLSVEFTDDP--HPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + +L E+ C+ A PN+YIR A++ +Q +SF++ +P
Sbjct: 57 DLKDPAGVLLEVNACRTANPNSYIRLNAYDASLGRQTTALSFIVNRP 103
>gi|16263938|ref|NP_436730.1| ribulose-1,5-bisphosphate carboxylase small subunit protein
[Sinorhizobium meliloti 1021]
gi|17368193|sp|P58349.1|RBS_RHIME RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|15140062|emb|CAC48590.1| putative ribulose-1,5-bisphosphate carboxylase small subunit
protein [Sinorhizobium meliloti 1021]
Length = 129
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I ++ Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVQYCLGKGWAIGVEYTDD--PHPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D+ ++ E+++C+KA+P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLKDAKGVMMELEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRPENEPS 108
>gi|132139|sp|P23756.1|RBS_GALSU RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|68046|pir||RKKKSC ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain - red
alga (Cyanidium caldarium) chloroplast
gi|414145701|pdb|4F0H|B Chain B, Unactivated Rubisco With Oxygen Bound
gi|414145703|pdb|4F0K|B Chain B, Unactivated Rubisco With Magnesium And Carbon Dioxide
Bound
gi|414145705|pdb|4F0M|B Chain B, Unactivated Rubisco With Magnesium And A Water Molecule
Bound
gi|8925950|gb|AAF81682.1|AF233069_5 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Galdieria sulphuraria]
gi|13515416|emb|CAA39141.2| ribulose-1,5-biphosphate-carboxylase/oxygenase, small subunit
[Cyanidium caldarium]
gi|227600|prf||1707276B RuBisCO S
Length = 138
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+IDYM+ K +E+ +H NS +W MW LP+
Sbjct: 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNS---------FWEMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
F D + +L EI C+KA N YI+ + F++++ + +SF++ +P
Sbjct: 56 FEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRP 103
>gi|34393778|dbj|BAC84930.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|34393781|dbj|BAC84932.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722275|dbj|BAF48534.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722278|dbj|BAF48536.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722281|dbj|BAF48538.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722284|dbj|BAF48540.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722287|dbj|BAF48542.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722290|dbj|BAF48544.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722293|dbj|BAF48546.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722296|dbj|BAF48548.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722299|dbj|BAF48550.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722302|dbj|BAF48552.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722305|dbj|BAF48554.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722308|dbj|BAF48556.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
gi|126722311|dbj|BAF48558.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia pseudolinearis]
Length = 138
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ +G +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSQGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S I+ EI C+KA PN Y++ AF+N + + MSF++ +P
Sbjct: 57 DVKDASAIMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
>gi|119384437|ref|YP_915493.1| ribulose-bisphosphate carboxylase [Paracoccus denitrificans PD1222]
gi|119374204|gb|ABL69797.1| ribulose 1,5-bisphosphate carboxylase small subunit [Paracoccus
denitrificans PD1222]
Length = 129
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 15/110 (13%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEF-DEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I +++Y+L + W +EF DE H N+ YW MW PM
Sbjct: 8 FSFLPDLTDEQIRDQVEYILSRDWAVGIEFTDEP---HPRNT---------YWEMWGNPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
F D+ ++ E+ EC+KA+ ++YIR AF++ + + MSF++ +P +
Sbjct: 56 FDLKDAKGVMMELDECRKAHGDSYIRINAFDSTRGWETVMMSFIVNRPKS 105
>gi|239816006|ref|YP_002944916.1| Ribulose-bisphosphate carboxylase [Variovorax paradoxus S110]
gi|239802583|gb|ACS19650.1| Ribulose-bisphosphate carboxylase [Variovorax paradoxus S110]
Length = 139
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I+++++Y L KGW LE+ + H N+ +W M+ PMF
Sbjct: 8 FSFLPDLSDEQISRQVEYCLGKGWAIGLEYTDDP--HPRNT---------FWEMFGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
D++ ++ E+ C+K +P YIR AF++ + MSF++ +P+
Sbjct: 57 DIKDAAGVMLELAACRKTFPQQYIRVTAFDSTHGTESVVMSFIVNRPS 104
>gi|58045402|gb|AAW65023.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Ecklonia radiata]
Length = 117
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y +KKGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAIKKGWAVSVEWTDDP--HPRNA---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D++ ++ E+ EC+K P YI+ AF+ + +SFL+Q+P+
Sbjct: 57 DIQDTAALMYELAECRKVNPEGYIKINAFDASIGTESCALSFLVQRPS 104
>gi|334319926|ref|YP_004556555.1| ribulose-bisphosphate carboxylase [Sinorhizobium meliloti AK83]
gi|334097665|gb|AEG55675.1| Ribulose-bisphosphate carboxylase [Sinorhizobium meliloti AK83]
Length = 129
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGKGWAIGVEYTDD--PHPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTTTTS 171
D+ ++ E+++C+K +P YIR AF++ + + MSF++ +P S
Sbjct: 57 DLKDAKGVMMELEDCRKGHPQDYIRLNAFDSSRGLETVTMSFIVNRPENEPS 108
>gi|126695915|ref|YP_001090801.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9301]
gi|126542958|gb|ABO17200.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. MIT 9301]
Length = 113
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ + I +I Y++ +GW P +E +VH YW+ WKL
Sbjct: 16 LETFGFLPPMTQEEIYDQIAYIIAQGWSPVIE-----HVHPSGCMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + I++E++ C +AYP+ ++R + ++ Q Q +F++
Sbjct: 65 PFFGEKDLNLIVSELEACHRAYPDHHVRIIGYDAYTQSQGTAFVV 109
>gi|365900797|ref|ZP_09438657.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. STM 3843]
gi|365418361|emb|CCE11199.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Bradyrhizobium sp. STM 3843]
Length = 140
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I ++ Y L KGW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQITAQVQYCLDKGWAVNIEFTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCM--SFLIQKP 166
D++ I+ E+ +C+K Y + YIR F++ + + SF++ +P
Sbjct: 57 DLRDAAGIMRELADCRKIYGDRYIRISGFDSSHGWESLRISFIVNRP 103
>gi|384220892|ref|YP_005612058.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Bradyrhizobium japonicum USDA 6]
gi|354959791|dbj|BAL12470.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Bradyrhizobium japonicum USDA 6]
Length = 135
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I K++ Y L GW +EF + + YW MW LPMF
Sbjct: 8 FSFLPDLTDDQIYKQVQYCLTNGWAVNIEFTDDPHPR-----------STYWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ EC++ Y + YIR F++ + +SFL+ +P
Sbjct: 57 DLQDAAGVMMELAECRRVYGDRYIRISGFDSSHGWESVRISFLVNRP 103
>gi|19919146|gb|AAM08166.1|AF346212_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion aglandum]
Length = 130
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+I Y + KGW +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIKKQITYAISKGWAINIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + ++ E+ C+K + + YI+ AF+N + + +SFLI +P+
Sbjct: 56 FDIQDVATVMYEVNNCRKTHSSIYIKINAFDNTRGIESCVLSFLINRPS 104
>gi|310877211|gb|ADP36966.1| hypothetical protein [Asterochloris sp. DA2]
Length = 64
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 117 KLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTT 168
KLPMFGC D SQ+L EI K++PNAYIR +AF+N +Q Q SFL+ +P++
Sbjct: 1 KLPMFGCTDPSQVLTEISNATKSFPNAYIRLVAFDNVRQVQVSSFLVHRPSS 52
>gi|37726894|gb|AAO39723.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion defectum]
Length = 132
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I+Y + W +E+ E H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIVKQIEYAIASNWAINIEYTEDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E++ C+KA+ + YI+ AF+N + + +SF+I +P
Sbjct: 57 DIQDTASVMYEVKNCRKAHSSVYIKINAFDNTRGVESCVLSFIINRP 103
>gi|257221112|gb|ACV52370.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Halopteris filicina]
Length = 132
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSDD I K++ Y +KKGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDDQIKKQVAYAIKKGWAVSVEWTDDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + ++ E+ EC++ P YI+ AF+ + +SF++Q+P
Sbjct: 57 DVQDPAALMYELNECRRLNPEGYIKINAFDASIGTESCALSFIVQRP 103
>gi|257221114|gb|ACV52371.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Halopteris filicina]
Length = 130
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSDD I K++ Y +KKGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDDQIKKQVAYAIKKGWAVSVEWTDDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + ++ E+ EC++ P YI+ AF+ + +SF++Q+P
Sbjct: 57 DVQDPAALMYELNECRRLNPEGYIKINAFDASIGTESCALSFIVQRP 103
>gi|58045378|gb|AAW65007.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Lessonia nigrescens]
Length = 117
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQVAYAMTKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SFL+Q+P+
Sbjct: 57 DIQDPAAVMYELGECRKVNPEGYIKINAFDASIGTESCVLSFLVQRPS 104
>gi|19919160|gb|AAM08173.1|AF346219_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion sparsum]
Length = 130
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP +D+ I K+I+Y + + W +E+ E H N+ YW +W LP+F
Sbjct: 8 FSFLPDFTDEQIVKQIEYAISENWAINIEYTEDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
DS+ ++ E+ C+KA+ + YI+ AF+N + + +SF+I +P
Sbjct: 57 DIQDSATVMYEVNNCRKAHSSVYIKINAFDNTRGIESCVLSFIINRP 103
>gi|19919164|gb|AAM08175.1|AF346221_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion sparsum]
gi|19919166|gb|AAM08176.1|AF346222_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion sparsum]
Length = 132
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP +D+ I K+I+Y + + W +E+ E H N+ YW +W LP+F
Sbjct: 8 FSFLPDFTDEQIVKQIEYAISENWAINIEYTEDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
DS+ ++ E+ C+KA+ + YI+ AF+N + + +SF+I +P
Sbjct: 57 DIQDSATVMYEVNNCRKAHSSVYIKINAFDNTRGIESCVLSFIINRP 103
>gi|226731974|gb|ACO82058.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pyropia haitanensis]
Length = 138
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y++ KG+ +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLAYIVSKGFSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+ ++ EI C+KA PN YI+ AF+N + + +SF++ +P
Sbjct: 57 DVKDAFAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVLSFIVNRP 103
>gi|19919162|gb|AAM08174.1|AF346220_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion sparsum]
Length = 131
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP +D+ I K+I+Y + + W +E+ E H N+ YW +W LP+F
Sbjct: 8 FSFLPDFTDEQIVKQIEYAISENWAINIEYTEDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
DS+ ++ E+ C+KA+ + YI+ AF+N + + +SF+I +P
Sbjct: 57 DIQDSATVMYEVNNCRKAHSSVYIKINAFDNTRGIESCVLSFIINRP 103
>gi|58045351|gb|AAW64989.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Undaria pinnatifida]
Length = 117
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D++ ++ E+ EC+K P YI+ AF+ + +SFL+Q+P
Sbjct: 57 DIQDAAALMYELAECRKVNPEGYIKINAFDASIGTESCALSFLVQRPA 104
>gi|58045375|gb|AAW65005.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Lessonia flavicans]
Length = 109
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SFL+Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFLVQRPS 104
>gi|116695337|ref|YP_840913.1| ribulose bisphosphate carboxylase small chain [Ralstonia eutropha
H16]
gi|339322653|ref|YP_004681547.1| ribulose bisphosphate carboxylase small subunit [Cupriavidus
necator N-1]
gi|113529836|emb|CAJ96183.1| ribulose bisphosphate carboxylase small chain [Ralstonia eutropha
H16]
gi|338169261|gb|AEI80315.1| ribulose bisphosphate carboxylase small subunit [Cupriavidus
necator N-1]
Length = 139
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I +++Y L +GW +E+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPDLTDAQITSQLEYCLNQGWAVGIEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILLEINNARSTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|38638087|ref|NP_943061.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Ralstonia eutropha H16]
gi|3183161|sp|Q59102.2|RBSP_RALEH RecName: Full=Ribulose bisphosphate carboxylase small chain,
plasmid; Short=RuBisCO small subunit
gi|950107|gb|AAA83748.1| CbbS [Ralstonia eutropha H16]
gi|32527425|gb|AAP86175.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Ralstonia eutropha H16]
Length = 139
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I +++Y L +GW +E+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPDLTDAQITSQLEYCLNQGWAVGIEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILLEINNARSTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|72383716|ref|YP_293071.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. NATL2A]
gi|124025316|ref|YP_001014432.1| ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. NATL1A]
gi|72003566|gb|AAZ59368.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Prochlorococcus marinus str. NATL2A]
gi|123960384|gb|ABM75167.1| Ribulose bisphosphate carboxylase, small chain [Prochlorococcus
marinus str. NATL1A]
Length = 113
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 59 FEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKL 118
E +LP ++ D I +I Y++ +GW P +E +V S YW+ WKL
Sbjct: 16 LETFGFLPPMTQDEIYDQIAYIIAQGWSPVIE-----HVQPSGSMQ------TYWSYWKL 64
Query: 119 PMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLI 163
P FG D + +++E++ C +AYP+ ++R + ++ Q Q F++
Sbjct: 65 PFFGEKDLNLVVSELEACHRAYPDHHVRIVGYDAYTQSQGTCFVV 109
>gi|6137421|pdb|1BWV|S Chain S, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
gi|6137423|pdb|1BWV|U Chain U, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
gi|6137425|pdb|1BWV|W Chain W, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
gi|6137427|pdb|1BWV|Y Chain Y, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Length = 138
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+IDYM+ K +E+ +H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNA---------YWEIWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + +L EI C+KA N YI+ + F++ + + +SF++ +P
Sbjct: 57 DVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRP 103
>gi|950104|gb|AAA83746.1| CbbS [Ralstonia eutropha H16]
Length = 139
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D I +++Y L +GW +E+ + H N+ YW M+ LPMF
Sbjct: 8 FSFLPDLTDAQITSQLEYCLNQGWAVGIEYTDDP--HPRNT---------YWEMFGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILLEINNARSTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|30749270|pdb|1IWA|B Chain B, Rubisco From Galdieria Partita
gi|30749272|pdb|1IWA|D Chain D, Rubisco From Galdieria Partita
gi|30749274|pdb|1IWA|F Chain F, Rubisco From Galdieria Partita
gi|30749276|pdb|1IWA|H Chain H, Rubisco From Galdieria Partita
gi|30749278|pdb|1IWA|J Chain J, Rubisco From Galdieria Partita
gi|30749280|pdb|1IWA|L Chain L, Rubisco From Galdieria Partita
gi|30749282|pdb|1IWA|N Chain N, Rubisco From Galdieria Partita
gi|30749284|pdb|1IWA|P Chain P, Rubisco From Galdieria Partita
gi|4519904|dbj|BAA75797.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Galdieria partita]
Length = 138
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+IDYM+ K +E+ +H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNA---------YWEIWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D + +L EI C+KA N YI+ + F++ + + +SF++ +P
Sbjct: 57 DVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRP 103
>gi|58045381|gb|AAW65009.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Lessonia corrugata]
Length = 117
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQVAYAMTKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SFL+Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFLVQRPS 104
>gi|398352975|ref|YP_006398439.1| ribulose bisphosphate carboxylase small chain [Sinorhizobium fredii
USDA 257]
gi|390128301|gb|AFL51682.1| ribulose bisphosphate carboxylase small chain [Sinorhizobium fredii
USDA 257]
Length = 129
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++Y L KGW +E+ + H N+ YW MW PMF
Sbjct: 8 FSFLPDLTDEQITAQVEYCLGKGWAIGVEYTDD--PHPRNT---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+ ++ E+++C+KA+ YIR AF++ + + MSF++ +P
Sbjct: 57 DLKDAKGVMMELEDCRKAHAQDYIRLNAFDSSRGLETVTMSFIVNRP 103
>gi|58045432|gb|AAW65043.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Cymathaere triplicata]
Length = 117
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSDD I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|37726892|gb|AAO39722.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion nipponicum]
Length = 132
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+I+Y + W +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIQKQIEYAISNSWAINIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + ++ E+ C+KA+ + YI+ AF+N + + +SFLI +P+
Sbjct: 56 FDIKDVATVMYEVNNCRKAHSSIYIKINAFDNTRGVESCVLSFLINRPS 104
>gi|257221080|gb|ACV52350.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Dictyopteris divaricata]
Length = 135
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y + K W +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVEYAITKEWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFN-NQKQGQC-MSFLIQKPT 167
D + +L E+ +C++ P YI+ AF+ N+ C +SF++Q+PT
Sbjct: 57 DIKDPAALLYELNQCRRVNPEGYIKVNAFDANRGTESCVLSFIVQRPT 104
>gi|19919154|gb|AAM08170.1|AF346216_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion nipponicum]
gi|19919156|gb|AAM08171.1|AF346217_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion nipponicum]
gi|19919158|gb|AAM08172.1|AF346218_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion nipponicum]
Length = 130
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+I+Y + W +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIQKQIEYAISNSWAINIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D + ++ E+ C+KA+ + YI+ AF+N + + +SFLI +P+
Sbjct: 56 FDIKDVATVMYEVNNCRKAHSSIYIKINAFDNTRGVESCVLSFLINRPS 104
>gi|19919168|gb|AAM08177.1|AF346223_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Antithamnion kylinii]
Length = 131
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP +D+ I K+I+Y + + W +E+ E H N+ YW +W LP+
Sbjct: 7 TFSFLPDFTDEQITKQIEYAISQNWAINIEYTEDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
F D++ ++ E+ C+KA+ + YI+ AF+N + + +SF+I +P
Sbjct: 56 FDIKDTATVMYEVNNCRKAHSSVYIKINAFDNTRGVESCVLSFIINRP 103
>gi|335424085|ref|ZP_08553101.1| ribulose-bisphosphate carboxylase [Salinisphaera shabanensis E1L3A]
gi|335424425|ref|ZP_08553434.1| ribulose-bisphosphate carboxylase [Salinisphaera shabanensis E1L3A]
gi|334889110|gb|EGM27402.1| ribulose-bisphosphate carboxylase [Salinisphaera shabanensis E1L3A]
gi|334890373|gb|EGM28643.1| ribulose-bisphosphate carboxylase [Salinisphaera shabanensis E1L3A]
Length = 140
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K++ Y L GW LE+ + H N+ YW M+ PM
Sbjct: 7 TFSFLPDLTDEQIKKQVKYCLDNGWAVNLEYTDDP--HPRNT---------YWEMYGQPM 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
F D + ++ +++E +K +PN YIR AF++ Q + +SF++ +P
Sbjct: 56 FDLKDPAGLMMDLEEARKTFPNHYIRLTAFDSTHQWETPRLSFIVNRP 103
>gi|114763380|ref|ZP_01442787.1| ribulose-bisphosphate carboxylase small chain [Pelagibaca
bermudensis HTCC2601]
gi|114543918|gb|EAU46929.1| ribulose-bisphosphate carboxylase small chain [Roseovarius sp.
HTCC2601]
Length = 139
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I + Y + GW +E+ + H NS YW MW PMF
Sbjct: 8 FSFLPDLTDDDIRTQAQYAIDNGWAVSVEYTDDP--HPRNS---------YWEMWGHPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKPT 167
D++ ++ E+ EC+K + + YIR LAF+ + MSF++ +P
Sbjct: 57 DNPDAAAVVYEVNECRKEHGSKYIRVLAFDASAGWESIRMSFIVNRPA 104
>gi|384080981|dbj|BAM10934.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Pyropia tanegashimensis]
Length = 138
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+K++ Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQISKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S I+ EI C+KA + YI+ AF+N + + +SFL+ +P
Sbjct: 57 DVKDASAIMYEISSCRKAKSSYYIKVNAFDNTRGIESCVLSFLVNRP 103
>gi|132152|sp|P23652.1|RBS_PYLLI RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|14188|emb|CAA39052.1| ribulose-1,5-bisphosphate carboxylase oxygenase small subunit
[Pylaiella littoralis]
Length = 139
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I ++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKLQVGYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + ++ E+ EC+K P YI+ AF+ + MSF++Q+P
Sbjct: 57 DVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRP 103
>gi|242620087|ref|YP_003002091.1| ribulose bisphosphate carboxlyase small chain [Aureococcus
anophagefferens]
gi|239997332|gb|ACS36855.1| ribulose bisphosphate carboxlyase small chain [Aureococcus
anophagefferens]
Length = 139
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+DD I K+++Y + KG +E+ + H N YW MW LP+
Sbjct: 7 AFSFLPDLTDDQILKQVEYAMSKGLALSVEWTDD--PHPRNC---------YWDMWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
F C D+S ++ E+ EC+K P YI+ AF+ + ++F+ +P +
Sbjct: 56 FDCQDASALMYELNECRKLNPEGYIKIQAFDASLGTESCVLAFMASRPAS 105
>gi|384080975|dbj|BAM10930.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Porphyra yamadae]
gi|384080978|dbj|BAM10932.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Porphyra yamadae]
Length = 138
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+++Y++ KG +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQINKQLNYIISKGLSANVEYTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D+S I+ EI C+KA + YI+ AF+N + + +SFL+ +P
Sbjct: 57 DVKDASAIMYEISSCRKAKSSYYIKVNAFDNTRGIESCVLSFLVNRP 103
>gi|58045348|gb|AAW64987.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pleurophycus gardneri]
Length = 117
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SFL+Q+P
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFLVQRPA 104
>gi|257221087|gb|ACV52354.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Proselachista taeniiformis]
Length = 133
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I ++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKLQVAYAMTKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + ++ E+ EC+K P YI+ AF+ + MSF++Q+P
Sbjct: 57 DVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRP 103
>gi|347738123|ref|ZP_08869719.1| Ribulose bisphosphate carboxylase small chain [Azospirillum
amazonense Y2]
gi|346918942|gb|EGY00694.1| Ribulose bisphosphate carboxylase small chain [Azospirillum
amazonense Y2]
Length = 139
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I ++ Y + +GW +EF + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTDEQITAQVQYCIDQGWAVNIEFTDD--PHPRNT---------YWDMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ ++ E+ C+K Y + YIR F+ + +SF++ +P
Sbjct: 57 DIRDAAGVMGELASCRKVYGDRYIRISGFDASHGWESVRLSFIVNRP 103
>gi|58045393|gb|AAW65017.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Postelsia palmaeformis]
Length = 117
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKQQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D++ ++ E+ EC+K P+ YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDAAALMYELGECRKVNPDGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|389872738|ref|YP_006380157.1| ribulose-bisphosphate carboxylase [Advenella kashmirensis WT001]
gi|388537987|gb|AFK63175.1| ribulose-bisphosphate carboxylase [Advenella kashmirensis WT001]
Length = 139
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+++ I K++ Y L GW +E+ + H N+ +W M+ PMF
Sbjct: 8 FSFLPDLTNEQITKQLQYCLDNGWAVGIEYTDDP--HPRNT---------FWEMFGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 166
D++ IL EI++ + +PN YIR AF++ + MSF++ +P
Sbjct: 57 DLRDAAGILQEIEQARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
>gi|19919170|gb|AAM08178.1|AF346224_1 ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
[Pterothamnion yezoense]
Length = 130
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+I+Y + W +E+ + H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQITKQIEYAISLNWSINIEYTDDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F D+S++ EI C+K Y + YI+ AF+N + + +SF+I +P+
Sbjct: 56 FDIQDASKVTYEINNCRKKYSDQYIKLNAFDNTRGVESCVLSFIINRPS 104
>gi|430002612|emb|CCF18393.1| Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit) [Rhizobium sp.]
Length = 129
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I+ +++Y L W +E+ + H N YW MW PMF
Sbjct: 8 FSFLPDLTDEQISAQVEYCLNNDWAIGVEYTDDP--HPRNI---------YWEMWGNPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ ++ EI+ C+ A+P AYIR AF++ + + MSF++ +P
Sbjct: 57 DLKDAAGVMMEIRACRDAWPEAYIRINAFDSTRGFETVRMSFIVNRP 103
>gi|58045363|gb|AAW64997.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pterygophora californica]
Length = 117
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P
Sbjct: 57 DIQDPAALMFELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPA 104
>gi|132162|sp|P23012.1|RBS_XANFL RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
gi|48545|emb|CAA35116.1| ribulose bisphosphate carboxylase [Xanthobacter flavus]
Length = 133
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+ + +I Y L + W +E+ + H N+ YW MW LPMF
Sbjct: 8 FSFLPDLTAAQVKAQIQYALDQNWAVSVEYTDD--PHPRNT---------YWEMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKP 166
D++ + E++ C+ A+P Y+R AF++ + + +SF++Q+P
Sbjct: 57 DLRDAAGVYGEVEACRTAHPGKYVRVNAFDSNRGWETVRLSFIVQRP 103
>gi|257221093|gb|ACV52358.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sphacelaria nipponica]
gi|257221099|gb|ACV52362.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sphacelaria recurva]
Length = 123
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K++ Y +KKGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQVAYAIKKGWAVSVEWTDDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC++ P YI+ AF+ + +SF++ +PT
Sbjct: 57 DVKDPAALMYELNECRRLNPEGYIKINAFDASIGTESCALSFIVDRPT 104
>gi|392953840|ref|ZP_10319392.1| ribulose-bisphosphate carboxylase [Hydrocarboniphaga effusa AP103]
gi|391857739|gb|EIT68269.1| ribulose-bisphosphate carboxylase [Hydrocarboniphaga effusa AP103]
Length = 144
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD I ++ Y L +GW +E+ + H N+ YW M+ LPMF
Sbjct: 14 FSFLPDLSDAQIKAQVAYALHQGWAVNVEYTDDP--HPRNT---------YWEMFGLPMF 62
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKPT 167
D + ++ EI C+K + N Y+R AF+ + + MSF++ +P
Sbjct: 63 DLKDPAGVMMEIDACRKTFANHYVRVTAFDATRGWETPRMSFIVNRPV 110
>gi|297567607|ref|YP_003686578.1| hypothetical protein Mesil_3254 [Meiothermus silvanus DSM 9946]
gi|296852056|gb|ADH65070.1| hypothetical protein Mesil_3254 [Meiothermus silvanus DSM 9946]
Length = 140
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I ++I Y+ + GW +E+ + H N+ +W MW LPMF
Sbjct: 8 FSFLPDLTDEEIERQIAYIRQNGWAVSIEYTDD--PHPYNT---------FWHMWGLPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPTT 168
D++ + E ++C++A+P YI+ F+ Q Q +SF+ +PT+
Sbjct: 57 DLEDAAGAMYEFKKCREAFPKHYIKINGFDPSPMWQAQRVSFIAHRPTS 105
>gi|58045357|gb|AAW64993.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Alaria marginata]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPA 104
>gi|260427860|ref|ZP_05781839.1| ribulose bisphosphate carboxylase, small subunit [Citreicella sp.
SE45]
gi|260422352|gb|EEX15603.1| ribulose bisphosphate carboxylase, small subunit [Citreicella sp.
SE45]
Length = 139
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+DD I + Y + GW +E+ + H NS YW MW PMF
Sbjct: 8 FSFLPDLTDDDIRVQAQYAIDNGWAVSVEYTDDP--HPRNS---------YWEMWGHPMF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQC--MSFLIQKPT 167
D++ + E+ EC+K + + YIR LAF+ + MSF++ +P
Sbjct: 57 DNRDAAAAVYEVNECRKQHGSKYIRVLAFDATHGWESIRMSFIVNRPA 104
>gi|58045390|gb|AAW65015.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Nereocystis luetkeana]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKQQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D++ ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDAAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|58045384|gb|AAW65011.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Macrocystis integrifolia]
gi|58045387|gb|AAW65013.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Pelagophycus porra]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKQQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D++ ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDAAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPSN 105
>gi|58045360|gb|AAW64995.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Lessoniopsis littoralis]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P
Sbjct: 57 DIQDPAALMFELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPA 104
>gi|257221104|gb|ACV52365.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sphacelaria fusca]
gi|257221107|gb|ACV52367.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sphacelaria fusca]
Length = 123
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K++ Y +KKGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQVAYAIKKGWAVSVEWTDDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC++ P YI+ AF+ + +SF++ +PT
Sbjct: 57 DIQDPAALMYELNECRRLNPEGYIKINAFDASIGTESCALSFIVDRPT 104
>gi|58045417|gb|AAW65033.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Laminaria ephemera]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPSN 105
>gi|58045411|gb|AAW65029.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Laminaria yezoensis]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPSN 105
>gi|58045420|gb|AAW65035.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Laminaria sinclairii]
Length = 117
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKKQVAYAMTKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|58045369|gb|AAW65001.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Costaria costata]
Length = 117
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQVAYAMTKGWAVSVEWTDDP--HPRNA---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELAECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|1334342|emb|CAA38399.1| ribulose bisphosphate carboxylase [Antithamnion sp.]
Length = 138
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K+I Y + + W +EF + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKKQIAYAVSQNWAINIEFTDDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
ND ++ E++ C+K + YI+ AF+N + + +SF+I +P+
Sbjct: 57 DINDVESVMYELESCRKQHSGLYIKINAFDNTRGVESCVLSFIINRPS 104
>gi|132134|sp|P25458.1|RBS_ANTSP RecName: Full=Ribulose bisphosphate carboxylase small chain;
Short=RuBisCO small subunit
Length = 138
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
S+LP L+D+ I K+I Y + + W +EF + H N+ YW +W LP+
Sbjct: 7 TFSFLPDLTDEQIKKQIAYAVSQNWAINIEFTDDP--HPRNN---------YWELWGLPL 55
Query: 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKPT 167
F ND ++ E++ C+K + YI+ AF+N + + +SF+I +P+
Sbjct: 56 FDINDVESVMYELESCRKQHSGLYIKINAFDNTRGVESCVLSFIINRPS 104
>gi|403066565|ref|YP_006639054.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Saccharina japonica]
gi|304269203|gb|ADM16564.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Saccharina japonica]
gi|378787478|gb|AFC40108.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Saccharina japonica]
Length = 139
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKQQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPTT 168
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPSN 105
>gi|58045405|gb|AAW65025.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Saccharina sessilis]
Length = 117
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I +++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLTDEQIKQQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DMQDPAALMYELGECRKVNPEGYIKVNAFDASIGTESCVLSFIVQRPS 104
>gi|58045423|gb|AAW65037.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Laminaria digitata]
Length = 117
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP L+D+ I K++ Y + KGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLNDEQIKKQVAYAMSKGWAVSVEWTDDP--HPRNA---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P+
Sbjct: 57 DIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPS 104
>gi|376403702|ref|YP_005090063.1| rbcS gene product (chloroplast) [Fucus vesiculosus]
gi|269991265|emb|CAX12443.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Fucus vesiculosus]
Length = 139
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I +I+Y + K W +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKNQINYAISKNWAVSVEWTDDP--HPRNA---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
DS+ ++ E+ EC+K P YI+ AF+ + +SF++Q+P
Sbjct: 57 DIKDSAALMYELNECRKINPEGYIKINAFDASIGTESCVLSFIVQRPA 104
>gi|257221090|gb|ACV52356.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Colpomenia sinuosa]
Length = 123
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I ++ Y + KGW +E+ + H NS YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKLQVAYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 166
D + ++ E+ EC+K P YI+ AF+ + +SF++Q+P
Sbjct: 57 DVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVLSFIVQRP 103
>gi|257221038|gb|ACV52322.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sargassum hemiphyllum]
gi|257221041|gb|ACV52324.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sargassum hemiphyllum]
gi|257221044|gb|ACV52326.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sargassum hemiphyllum]
gi|257221047|gb|ACV52328.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sargassum hemiphyllum]
Length = 123
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I +++ Y + KGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKQQVGYAISKGWAVSVEWTDD--PHPRNA---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPT 167
DS+ ++ E+ EC++ P YI+ ++ K + +SF++Q+P
Sbjct: 57 DIKDSAAVMYELNECRRINPEGYIKINCYDASKGTESCALSFIVQRPA 104
>gi|257221029|gb|ACV52316.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sargassum confusum]
Length = 123
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I +++ Y + KGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKQQVGYAISKGWAISVEWTDD--PHPRNA---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPT 167
DS+ ++ E+ EC++ P YI+ ++ K + +SF++Q+P
Sbjct: 57 DVKDSAAVMYELNECRRINPEGYIKINCYDASKGTESCALSFIVQRPA 104
>gi|257221096|gb|ACV52360.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sphacelaria rigidula]
gi|257221110|gb|ACV52369.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Sphacelaria yamadae]
Length = 123
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF 121
S+LP LSD+ I K+I Y +KKGW +E+ + H N+ YW +W LP+F
Sbjct: 8 FSFLPDLSDEQIKKQIAYAIKKGWAVSVEWTDDP--HPRNN---------YWELWGLPLF 56
Query: 122 GCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKPT 167
D + ++ E+ EC++ P YI+ AF+ + +SF++ +P
Sbjct: 57 DVKDPAALIYELNECRRLNPEGYIKINAFDASIGTESCALSFIVDRPA 104
>gi|298290442|ref|YP_003692381.1| ribulose-bisphosphate carboxylase [Starkeya novella DSM 506]
gi|296926953|gb|ADH87762.1| Ribulose-bisphosphate carboxylase [Starkeya novella DSM 506]
Length = 139
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 61 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM 120
A S+LP L+D+ I K++ Y + KGW +EF + H N+ YW +W PM
Sbjct: 7 AFSFLPDLTDEQITKQVQYCIDKGWAVNIEFTDDP--HPRNT---------YWELWGQPM 55
Query: 121 FGCNDSSQILNEIQECKKAYP-NAYIRCLAFNNQKQGQC--MSFLIQKP 166
F D++ ++ E+ C+KAY YIR AF++ + +SF+ +P
Sbjct: 56 FDVRDAAGVMFELNACRKAYAGRHYIRVSAFDSTHTWESLRLSFITDRP 104
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,946,204,464
Number of Sequences: 23463169
Number of extensions: 119166205
Number of successful extensions: 227927
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 225789
Number of HSP's gapped (non-prelim): 1280
length of query: 172
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 40
effective length of database: 9,262,057,059
effective search space: 370482282360
effective search space used: 370482282360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)