Query 030735
Match_columns 172
No_of_seqs 180 out of 460
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:29:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdd_S Ribulose bisphosphate c 100.0 5.5E-76 1.9E-80 460.3 16.3 124 48-171 1-124 (128)
2 1gk8_I Ribulose bisphosphate c 100.0 1.6E-74 5.5E-79 457.7 15.2 123 48-170 1-130 (140)
3 3zxw_B Ribulose bisphosphate c 100.0 6.6E-66 2.3E-70 398.6 13.0 111 48-171 1-111 (118)
4 1rbl_M Ribulose 1,5 bisphospha 100.0 1.7E-64 5.8E-69 386.1 13.8 107 48-167 2-108 (109)
5 1svd_M Ribulose bisphosphate c 100.0 4.3E-63 1.5E-67 378.8 14.0 107 48-167 4-110 (110)
6 1bwv_S Rubisco, protein (ribul 100.0 3.1E-58 1.1E-62 363.7 13.4 102 57-169 3-106 (138)
7 1bxn_I Rubisco, protein (ribul 100.0 3.7E-58 1.3E-62 363.7 10.7 102 57-169 3-106 (139)
8 4f0h_B Ribulose bisphosphate c 100.0 8E-57 2.7E-61 355.7 13.6 101 58-169 4-106 (138)
9 3frm_A Uncharacterized conserv 88.1 0.72 2.4E-05 36.5 5.1 60 81-148 13-75 (254)
10 3hxa_A Pterin-4-alpha-carbinol 65.4 4.4 0.00015 29.5 2.9 63 65-145 5-68 (104)
11 1cc5_A Cytochrome C5; electron 63.6 4.3 0.00015 27.2 2.4 18 66-83 66-83 (83)
12 1ru0_A DCOH-like protein dcohm 55.1 9.3 0.00032 27.8 3.1 61 65-144 7-69 (105)
13 3ph2_B Cytochrome C6; photosyn 52.9 9.6 0.00033 24.3 2.6 18 66-83 64-81 (86)
14 3m91_B Prokaryotic ubiquitin-l 49.8 9.3 0.00032 24.7 2.0 22 125-146 15-36 (44)
15 1gdv_A Cytochrome C6; RED ALGA 49.3 12 0.00041 23.8 2.6 16 67-82 64-79 (85)
16 2d0s_A Cytochrome C, cytochrom 47.8 13 0.00043 23.8 2.5 18 66-83 61-78 (79)
17 1kx2_A Mono-heme C-type cytoch 47.6 11 0.00037 24.6 2.3 18 66-83 63-80 (81)
18 3oon_A Outer membrane protein 47.5 18 0.00061 25.7 3.6 29 125-153 31-59 (123)
19 3td3_A Outer membrane protein 46.1 21 0.00071 25.4 3.7 29 125-153 28-56 (123)
20 2hqs_H Peptidoglycan-associate 45.1 21 0.00071 25.6 3.6 29 125-153 20-48 (118)
21 3dmi_A Cytochrome C6; electron 43.8 21 0.00073 22.8 3.2 17 67-83 66-82 (88)
22 1a56_A C-551, ferricytochrome 43.5 15 0.00051 23.5 2.4 18 66-83 63-80 (81)
23 1q02_A Sequestosome 1; helical 43.3 18 0.0006 24.1 2.7 21 65-85 2-22 (52)
24 2do7_A Cullin-4B, CUL-4B; heli 42.4 32 0.0011 25.1 4.3 26 62-92 59-84 (101)
25 1gks_A Cytochrome C551; haloph 41.2 17 0.00058 23.5 2.4 17 67-83 61-77 (78)
26 1e29_A Cytochrome C549; electr 40.6 17 0.00057 26.5 2.5 24 60-83 99-122 (135)
27 3pzs_A PM kinase, pyridoxamine 39.7 27 0.00091 28.2 3.8 68 58-153 48-116 (289)
28 2exv_A Cytochrome C-551; alpha 39.6 23 0.00078 22.5 2.8 17 67-83 65-81 (82)
29 3dr0_A Cytochrome C6; photosyn 39.2 15 0.00052 23.5 1.9 18 66-83 70-87 (93)
30 2ce0_A Cytochrome C6; chloropl 39.0 21 0.00072 23.7 2.7 20 64-83 75-94 (105)
31 3h20_A Replication protein B; 38.3 40 0.0014 29.7 4.9 71 63-154 74-153 (323)
32 1c75_A Cytochrome C-553; heme, 38.3 24 0.00081 22.1 2.7 18 66-83 53-70 (71)
33 2aiz_P Outer membrane protein 37.9 30 0.001 25.5 3.6 29 125-153 44-72 (134)
34 1ayg_A Cytochrome C-552; elect 37.7 25 0.00084 22.5 2.8 17 67-83 63-79 (80)
35 2zxy_A Cytochrome C552, cytoch 37.5 17 0.00057 23.1 1.9 18 66-83 69-86 (87)
36 2kgw_A Outer membrane protein 37.4 26 0.00087 25.3 3.1 28 125-152 38-65 (129)
37 1f1f_A Cytochrome C6; heme, pr 37.1 24 0.00081 22.6 2.6 16 67-82 68-83 (89)
38 3iyk_G VP2; icosahedral virus; 36.2 33 0.0011 32.5 4.3 54 67-124 459-529 (600)
39 3cuq_C Vacuolar protein-sortin 35.1 26 0.0009 27.9 3.0 37 67-119 68-104 (176)
40 3jst_A Putative pterin-4-alpha 35.0 18 0.00061 25.8 1.9 60 66-145 4-64 (97)
41 1r26_A Thioredoxin; redox-acti 34.7 64 0.0022 22.3 4.8 66 53-153 11-77 (125)
42 3cyp_B Chemotaxis protein MOTB 34.6 30 0.001 25.4 3.1 30 125-154 18-48 (138)
43 3cu4_A Cytochrome C family pro 33.2 27 0.00092 22.4 2.4 17 67-83 67-83 (85)
44 3zzp_A TS9, ribosomal protein 32.7 29 0.00099 24.0 2.6 31 50-80 37-68 (77)
45 3ug3_A Alpha-L-arabinofuranosi 32.1 63 0.0022 29.5 5.4 75 69-152 150-232 (504)
46 3ik2_A Endoglucanase A; TIM-li 31.7 1.1E+02 0.0038 28.4 7.0 81 50-150 127-224 (517)
47 1cch_A Cytochrome C551; electr 31.5 35 0.0012 21.4 2.7 17 67-83 65-81 (82)
48 1cno_A Cytochrome C552; electr 31.1 34 0.0012 22.2 2.6 19 66-84 65-83 (87)
49 2hgc_A YJCQ protein; SR346, st 30.3 38 0.0013 24.9 3.0 29 67-95 27-55 (102)
50 3dp5_A OMCF, cytochrome C fami 30.2 31 0.0011 23.4 2.4 17 67-83 81-97 (99)
51 2fqx_A Membrane lipoprotein TM 30.2 28 0.00094 28.2 2.4 33 120-154 192-226 (318)
52 2k1s_A Inner membrane lipoprot 30.2 46 0.0016 24.6 3.5 29 125-153 48-76 (149)
53 2r32_A GCN4-PII/tumor necrosis 30.1 26 0.00088 28.2 2.2 31 80-119 130-160 (166)
54 2v6u_A Pterin-4A-carbinolamine 30.0 17 0.0006 26.2 1.1 60 65-145 6-67 (104)
55 1c53_A Cytochrome C553; electr 30.0 32 0.0011 22.0 2.3 17 66-82 62-78 (79)
56 1rh4_A Right-handed coiled coi 29.6 24 0.00082 21.4 1.5 13 71-83 5-17 (35)
57 1unn_C POL IV, DNA polymerase 29.1 80 0.0027 22.1 4.5 29 122-150 69-98 (115)
58 2plc_A PI-PLC, phosphatidylino 27.9 37 0.0013 27.9 2.9 26 123-148 79-104 (274)
59 1cyi_A Cytochrome C6, cytochro 27.2 48 0.0016 21.3 2.8 17 67-83 66-82 (90)
60 2zon_G Cytochrome C551; nitrit 27.0 36 0.0012 21.9 2.2 17 67-83 69-85 (87)
61 1mz4_A Cytochrome C550; PSII a 26.8 34 0.0012 24.2 2.2 18 66-83 105-122 (137)
62 2vyo_A ECU11_0510, chitooligos 26.7 56 0.0019 26.2 3.7 59 60-140 55-114 (254)
63 1ls9_A Cytochrome C6; omega lo 26.5 50 0.0017 21.3 2.8 17 67-83 69-85 (91)
64 4dye_A Isomerase; enolase fami 26.0 1.5E+02 0.0052 25.5 6.5 57 65-154 164-221 (398)
65 3dfg_A Xcrecx, regulatory prot 25.8 45 0.0015 25.3 2.8 29 56-87 121-149 (162)
66 3aaf_A Werner syndrome ATP-dep 25.4 64 0.0022 23.9 3.6 29 58-86 55-83 (134)
67 1w2l_A Cytochrome oxidase subu 25.4 35 0.0012 22.2 1.9 17 67-83 82-98 (99)
68 1syr_A Thioredoxin; SGPP, stru 24.9 1.3E+02 0.0045 19.6 4.8 61 60-153 6-66 (112)
69 2vrq_A Alpha-L-arabinofuranosi 24.9 28 0.00096 31.0 1.7 74 69-149 134-212 (496)
70 4g68_A ABC transporter; transp 24.9 95 0.0033 25.9 4.9 36 111-151 66-102 (456)
71 2c1d_B SOXX; sulfur oxidation, 24.7 54 0.0019 23.2 3.0 18 67-84 119-136 (137)
72 3ose_A Serine/threonine-protei 24.3 51 0.0017 24.2 2.8 28 115-142 28-55 (120)
73 1c6r_A Cytochrome C6; electron 24.1 59 0.002 20.7 2.8 17 67-83 67-83 (89)
74 3ldt_A Outer membrane protein, 23.8 62 0.0021 24.7 3.3 29 125-153 68-96 (169)
75 3c1d_A Protein ORAA, regulator 23.3 53 0.0018 24.7 2.8 29 56-87 119-147 (159)
76 3s06_A Motility protein B; pep 23.3 65 0.0022 24.1 3.3 29 125-153 46-75 (166)
77 1wve_C 4-cresol dehydrogenase 23.2 56 0.0019 21.0 2.6 18 67-84 57-74 (80)
78 3h74_A Pyridoxal kinase; PSI-I 22.9 1.2E+02 0.0043 24.4 5.1 62 58-153 48-109 (282)
79 4erh_A Outer membrane protein 22.9 60 0.0021 23.7 2.9 29 125-153 36-66 (148)
80 1xb4_A VPS25, hypothetical 23. 22.8 72 0.0025 25.9 3.6 45 67-119 84-128 (202)
81 2k5e_A Uncharacterized protein 22.7 56 0.0019 22.0 2.6 23 121-143 49-71 (73)
82 1f1c_A Cytochrome C549; dimeri 22.6 56 0.0019 22.4 2.6 18 66-83 103-120 (129)
83 1thx_A Thioredoxin, thioredoxi 22.1 1.6E+02 0.0055 18.8 6.6 30 123-153 37-66 (115)
84 1th0_A SMT3-, sentrin-specific 21.9 53 0.0018 25.9 2.6 19 65-84 2-20 (226)
85 2gm5_A Transposon gamma-delta 21.6 43 0.0015 24.4 1.9 65 70-139 12-85 (139)
86 3v1h_A 1-phosphatidylinositol 21.4 57 0.0019 27.8 2.9 26 123-148 84-109 (306)
87 3ik4_A Mandelate racemase/muco 21.4 2.4E+02 0.0084 23.6 6.9 57 67-155 141-197 (365)
88 2ebb_A Pterin-4-alpha-carbinol 21.3 45 0.0015 23.9 1.9 59 66-145 1-60 (101)
89 2v9v_A Selenocysteine-specific 21.3 1.7E+02 0.0059 20.4 5.1 65 60-143 21-85 (135)
90 1vmb_A 30S ribosomal protein S 21.1 59 0.002 24.8 2.6 84 52-146 14-105 (140)
91 3tdu_C Cullin-1, CUL-1; E2:E3, 21.1 79 0.0027 21.8 3.1 18 69-86 46-63 (77)
92 1euv_A ULP1 protease; SUMO hyd 20.6 60 0.002 25.5 2.7 20 64-84 3-22 (221)
93 2l4d_A SCO1/SENC family protei 20.6 60 0.002 21.5 2.3 17 67-83 80-96 (110)
94 3ea1_A 1-phosphatidylinositol 20.4 63 0.0021 27.6 2.9 25 124-148 89-113 (298)
95 1t5h_X 4-chlorobenzoyl COA lig 20.4 1.6E+02 0.0055 24.9 5.5 39 130-168 414-454 (504)
96 2zzs_A Cytochrome C554; C-type 20.4 68 0.0023 21.2 2.6 18 66-83 85-102 (103)
97 3bdk_A D-mannonate dehydratase 20.3 1.6E+02 0.0056 25.5 5.7 29 67-95 188-224 (386)
98 1w1n_A Phosphatidylinositol 3- 20.2 21 0.0007 21.3 -0.1 11 73-83 5-15 (33)
No 1
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=100.00 E-value=5.5e-76 Score=460.32 Aligned_cols=124 Identities=53% Similarity=1.100 Sum_probs=121.1
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHH
Q 030735 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 127 (172)
Q Consensus 48 m~vw~p~~~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~s 127 (172)
||||||+|+||||||||||||||+||++||+|||+|||+|||||+|++|+||+|++||||||++||+|||||||||+|++
T Consensus 1 m~vw~p~~~~~~~tfSyLP~lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~~R~~~~~~~~~~~~yW~mWkLPmFg~td~~ 80 (128)
T 1wdd_S 1 XQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDAT 80 (128)
T ss_dssp CCCCCSSSCCCCSTTTTSSCCCHHHHHHHHHHHHHTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCCCTTCCCHH
T ss_pred CcccCCCCCccccccccCCCCCHHHHHHHHHHHHHCCCeeeEEecCCCceeeccCCCCCcccCCcccccCccCccCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCCCCCC
Q 030735 128 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171 (172)
Q Consensus 128 qVl~Eie~C~k~~P~~YIRliGfDn~rqvq~~sfIV~RP~~~~~ 171 (172)
|||+||++|+++|||+|||||||||++|+||+|||||||.+.+.
T Consensus 81 ~Vl~El~~C~k~~P~~YVRligfDn~~q~q~~sfIv~RP~~~~~ 124 (128)
T 1wdd_S 81 QVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCEE 124 (128)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECCTTC--
T ss_pred HHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEEECCCCccc
Confidence 99999999999999999999999999999999999999998764
No 2
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=100.00 E-value=1.6e-74 Score=457.68 Aligned_cols=123 Identities=56% Similarity=1.080 Sum_probs=118.3
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecC-------CCCCCccCCcceeeccCCC
Q 030735 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHREN-------SKMPGYYDGRYWTMWKLPM 120 (172)
Q Consensus 48 m~vw~p~~~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~-------~~sp~yyd~ryWtmWkLPm 120 (172)
||||+|+|+||||||||||||||+||++||+|||+|||+|||||+|++++||++ ++|||||||+||+||||||
T Consensus 1 m~vw~p~~~~~~etfSyLP~lt~eqI~kQI~YlL~qGw~p~lEf~d~~~~~r~~~~~~~~~~~~~~yyd~~YW~mWkLPm 80 (140)
T 1gk8_I 1 XMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPM 80 (140)
T ss_dssp CCCCCCSSCCCCSTTTTSSCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTSCBCGGGGGCSSCCTTCCBTSSCEEESCCC
T ss_pred CcccCCcCCceecccccCCCCCHHHHHHHHHHHHHCCCEeeEEeccCCcceecccccccccccCCCcCcCCeeeeCCcCC
Confidence 899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCCCCC
Q 030735 121 FGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTT 170 (172)
Q Consensus 121 fg~td~sqVl~Eie~C~k~~P~~YIRliGfDn~rqvq~~sfIV~RP~~~~ 170 (172)
|||+|++|||+||++|+|+|||+|||||||||++|+||+|||||||.+..
T Consensus 81 Fg~td~~qVl~El~~C~k~~P~~YVRligfDn~~q~q~~sfIV~RP~~~~ 130 (140)
T 1gk8_I 81 FGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTAR 130 (140)
T ss_dssp TTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECC----
T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEeECCCCCC
Confidence 99999999999999999999999999999999999999999999998754
No 3
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=100.00 E-value=6.6e-66 Score=398.60 Aligned_cols=111 Identities=49% Similarity=1.019 Sum_probs=91.1
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHH
Q 030735 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 127 (172)
Q Consensus 48 m~vw~p~~~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~s 127 (172)
|||||+ +|||||||||||||||||++||+|||+|||+|||||+|+++ |+++||+|||||||||+|++
T Consensus 1 m~~~p~--~kkfeTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~-----------~~~~yW~mWklPmf~~~d~~ 67 (118)
T 3zxw_B 1 MKTLPK--ERRYETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSN-----------AEIRYWTMWKLPLFNCTNAQ 67 (118)
T ss_dssp ---------------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCC-----------TTCCCCEEESSCCTTCCCHH
T ss_pred CCcCCC--CccccccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCC-----------cccCEEeecccCCcCCCCHH
Confidence 899996 79999999999999999999999999999999999999885 45999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCCCCCC
Q 030735 128 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPTTTTS 171 (172)
Q Consensus 128 qVl~Eie~C~k~~P~~YIRliGfDn~rqvq~~sfIV~RP~~~~~ 171 (172)
|||+||++|+++|||+|||||||||++|+||+|||||||+++.+
T Consensus 68 ~Vl~Ele~C~k~~p~~yVRliGfD~~~q~q~~sfIv~RP~~~~p 111 (118)
T 3zxw_B 68 DVLNEVQQCRSEYPNCFIRVVAFDNIKQCQVMSFIVYKPNQANS 111 (118)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECC-----
T ss_pred HHHHHHHHHHHHCCCceEEEEEEeCCcCEEEEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999987654
No 4
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=100.00 E-value=1.7e-64 Score=386.07 Aligned_cols=107 Identities=45% Similarity=0.944 Sum_probs=103.8
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHH
Q 030735 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 127 (172)
Q Consensus 48 m~vw~p~~~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~s 127 (172)
||+|+ |+||||||||||||||+||++||+|||+|||+|||||+|++++ +|+||+|||||||||+|++
T Consensus 2 ~~~~~--~~~~~etfSyLP~lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~-----------~~~yW~mwklPmf~~~d~~ 68 (109)
T 1rbl_M 2 MKTLP--KERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNP-----------EEFYWTMWKLPLFACAAPQ 68 (109)
T ss_dssp CCCCC--CCCCCSTTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCT-----------TCCCCEECSSCCTTCCCHH
T ss_pred CccCC--CcccccccccCCCCCHHHHHHHHHHHHHCCCEEEEEeccCccc-----------cccEEeecccCCcCCCCHH
Confidence 89998 7899999999999999999999999999999999999998865 4999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCC
Q 030735 128 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167 (172)
Q Consensus 128 qVl~Eie~C~k~~P~~YIRliGfDn~rqvq~~sfIV~RP~ 167 (172)
|||+||++|+++|||+|||||||||++|+||+|||||||+
T Consensus 69 ~Vl~Ele~C~k~~p~~yVRligfD~~~q~q~~sfIv~RP~ 108 (109)
T 1rbl_M 69 QVLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIVHRPG 108 (109)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEEEeCCCcEEEEEEEeeCCC
Confidence 9999999999999999999999999999999999999996
No 5
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=100.00 E-value=4.3e-63 Score=378.82 Aligned_cols=107 Identities=34% Similarity=0.781 Sum_probs=102.1
Q ss_pred eeeeccCCccccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHH
Q 030735 48 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSS 127 (172)
Q Consensus 48 m~vw~p~~~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~s 127 (172)
||.|+ |+||||||||||||||+||++||+|||+|||+|||||+|++++ +|+||+|||||||||+|++
T Consensus 4 ~~~~~--~~~~~etfSyLP~lt~eqI~kQV~Yll~qGw~p~iEf~d~~~~-----------~~~yW~mwklPmf~~~d~~ 70 (110)
T 1svd_M 4 MQDYK--QSLKYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNS-----------MNQYWYMWKLPFFGEQNVD 70 (110)
T ss_dssp CCCCC--CCCCCSTTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGT-----------TCSCCEEESCCCTTCCCHH
T ss_pred ccccC--CCccccccccCCCCCHHHHHHHHHHHHHCCCeeEEEeccCCcc-----------CCcEEeecccCCcCCCCHH
Confidence 45664 8999999999999999999999999999999999999998854 4999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEeeecCCCeEEEEEEEecCC
Q 030735 128 QILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKPT 167 (172)
Q Consensus 128 qVl~Eie~C~k~~P~~YIRliGfDn~rqvq~~sfIV~RP~ 167 (172)
|||+||++|+++|||+|||||||||++|+||+|||||||+
T Consensus 71 ~Vl~El~~C~k~~p~~yVRligfD~~~q~q~~sfIv~RP~ 110 (110)
T 1svd_M 71 NVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYRGN 110 (110)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEEEeCCCCEEEEEEEeeCCC
Confidence 9999999999999999999999999999999999999995
No 6
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=100.00 E-value=3.1e-58 Score=363.75 Aligned_cols=102 Identities=33% Similarity=0.691 Sum_probs=97.2
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHH
Q 030735 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136 (172)
Q Consensus 57 kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C 136 (172)
.+||||||||||||+||++||+|||+|||+|||||+|++|+ | |+||+|||||||||+|++|||+||++|
T Consensus 3 ~~~etfSyLP~ltdeqI~kQI~Yll~qGw~p~iEf~d~~~~-r----------~~yW~mWkLPmF~~td~~~Vl~Ele~C 71 (138)
T 1bwv_S 3 ITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHP-R----------NAYWEIWGLPLFDVTDPAAVLFEINAC 71 (138)
T ss_dssp CCCSTTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCT-T----------CCCCEECSSCBCSCCCHHHHHHHHHHH
T ss_pred eecceeccCCCCCHHHHHHHHHHHHHCCCeeeEEecCCCCC-c----------cCEEeccCCCCcCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999876 4 999999999999999999999999999
Q ss_pred HHHCCCCeEEEEeeecCCCeE--EEEEEEecCCCC
Q 030735 137 KKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPTTT 169 (172)
Q Consensus 137 ~k~~P~~YIRliGfDn~rqvq--~~sfIV~RP~~~ 169 (172)
+++|||+|||||||||++|+| |+|||||||.+.
T Consensus 72 ~k~~p~~YVRliGfD~~~~~qs~~~sfIV~RP~~~ 106 (138)
T 1bwv_S 72 RKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHE 106 (138)
T ss_dssp HHHCTTSEEEEEEEECCTTTCEEEEEEEEECCSCC
T ss_pred HHHCCCCeEEEEEEeCCCceEEEEEEEEEECCCCC
Confidence 999999999999999999654 999999999764
No 7
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=100.00 E-value=3.7e-58 Score=363.71 Aligned_cols=102 Identities=36% Similarity=0.768 Sum_probs=97.5
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHH
Q 030735 57 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQEC 136 (172)
Q Consensus 57 kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C 136 (172)
.+||||||||||||+||++||+|||+|||+|||||+|++|+ | |+||+|||||||||+|++|||+||++|
T Consensus 3 ~~~etfSyLP~ltdeqI~kQI~YlL~qGw~p~lE~~d~~~~-r----------~~yW~mWkLPmF~~td~~~Vl~Ele~C 71 (139)
T 1bxn_I 3 ITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHP-R----------NTYWEMFGLPMFDLRDAAGILMEINNA 71 (139)
T ss_dssp CCCSBTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCT-T----------CCCCEESSSCBTTCCCHHHHHHHHHHH
T ss_pred eecceeccCCCCCHHHHHHHHHHHHHCCCeEEEEeccCCcc-c----------cCEEeecCCCCcCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999876 4 999999999999999999999999999
Q ss_pred HHHCCCCeEEEEeeecCCCeE--EEEEEEecCCCC
Q 030735 137 KKAYPNAYIRCLAFNNQKQGQ--CMSFLIQKPTTT 169 (172)
Q Consensus 137 ~k~~P~~YIRliGfDn~rqvq--~~sfIV~RP~~~ 169 (172)
+++|||+|||||||||++|+| |+|||||||.+.
T Consensus 72 ~k~~p~~YVRliGfD~~~~~qs~~~sfIV~RP~~~ 106 (139)
T 1bxn_I 72 RNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADE 106 (139)
T ss_dssp HHHCSSSEEEEEEECTTTCCEEEEEECCCCGGGSC
T ss_pred HHHCCCCeEEEEEEeCCCceEEEEEEEEEECCCCC
Confidence 999999999999999999766 999999999754
No 8
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=100.00 E-value=8e-57 Score=355.71 Aligned_cols=101 Identities=34% Similarity=0.704 Sum_probs=96.1
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHH
Q 030735 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 137 (172)
Q Consensus 58 kfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~ 137 (172)
..|||||||||||+||.+||+|||+|||+|||||+|++|+ | |+||+|||||||||+|++|||+||++|+
T Consensus 4 t~~tfSyLP~ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~-r----------~~yW~mWkLPmFg~~d~~~Vl~Ele~C~ 72 (138)
T 4f0h_B 4 TQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHP-R----------NSFWEMWGLPLFEVTDPAPVLFEINACR 72 (138)
T ss_dssp CCSTTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCT-T----------CCCCEESSCCBCSCCSHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCCCC-c----------CCEEeecCCCCcCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999865 3 9999999999999999999999999999
Q ss_pred HHCCCCeEEEEeeecCCCe--EEEEEEEecCCCC
Q 030735 138 KAYPNAYIRCLAFNNQKQG--QCMSFLIQKPTTT 169 (172)
Q Consensus 138 k~~P~~YIRliGfDn~rqv--q~~sfIV~RP~~~ 169 (172)
++|||+|||||||||++|+ ||+|||||||++.
T Consensus 73 k~~p~~YVRliGfDn~~~~qs~~~sfIV~RP~~e 106 (138)
T 4f0h_B 73 KAKSNFYIKVVGFSSERGIESTIISFIVNRPKHE 106 (138)
T ss_dssp HHTTTSEEEEEEEECCTTTCEEEEEEEEECCSCC
T ss_pred HHCCCCeEEEEEEeCCCceEEEEEEEEEeCCCCC
Confidence 9999999999999999976 6999999999864
No 9
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus epidermidis ATCC structural genomics, PSI-2, protein structure initiative; HET: MES; 2.32A {Staphylococcus epidermidis}
Probab=88.07 E-value=0.72 Score=36.54 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=42.5
Q ss_pred HhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHH---HCCCCeEEEE
Q 030735 81 LKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK---AYPNAYIRCL 148 (172)
Q Consensus 81 L~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k---~~P~~YIRli 148 (172)
+..| .+-.|.++.- +|| +...|.||++.||.+.+.|- ..+...+|+.|.+ +++..++++.
T Consensus 13 ~~~~-~~~~~~~~~~-~~~-~~~~p~~y~~N~~~~~~~p~-----~~~~~~~i~~~~~~~~~~~~~~~~~~ 75 (254)
T 3frm_A 13 YIDG-NKITEDSRKA-IYL-LPPQPLKYASNTWIYKTMPT-----MNQWLKDIEVQKKMHLNQSSYHLSFS 75 (254)
T ss_dssp CCCS-EEEEECSSEE-EEE-CTTCTTCGGGSEEEESSCCC-----HHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hccC-ceEEecCcEE-Eec-CCccccccccceEEEecCCC-----HHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3445 4444544432 335 67899999999999998886 7788777777755 4577788886
No 10
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=65.45 E-value=4.4 Score=29.51 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCC-CCHHHHHHHHHHHHHHCCCC
Q 030735 65 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPNA 143 (172)
Q Consensus 65 LP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~-td~sqVl~Eie~C~k~~P~~ 143 (172)
-|+||++||.+.+..|...||..- .+.....| + |+.+-|.. -+--.-++++.|-..-||+-
T Consensus 5 ~~~Ls~~ei~~~L~~L~~~gW~~~---~~~~~l~r-----------~----f~F~~f~~a~~F~~~Va~~AE~~~HHPdi 66 (104)
T 3hxa_A 5 AHRLSAEERDQLLPNLRAVGWNEL---EGRDAIFK-----------Q----FHFKDFNRAFGFMSRVALQAEKLDHHPEW 66 (104)
T ss_dssp CCCCCHHHHHHHSHHHHTTTCEEC---SSSSCEEE-----------E----EECSSHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CccCCHHHHHHHHhhCCCCCCEEe---cCCCeEEE-----------E----EEeCCHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 578999999999999988999852 11122333 1 23333321 12334467788888889985
Q ss_pred eE
Q 030735 144 YI 145 (172)
Q Consensus 144 YI 145 (172)
.+
T Consensus 67 ~~ 68 (104)
T 3hxa_A 67 FN 68 (104)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 11
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=63.62 E-value=4.3 Score=27.16 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
+.|||+||..=+.||++|
T Consensus 66 ~~Lsd~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 66 ADCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SSCCHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 369999999999999875
No 12
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=55.06 E-value=9.3 Score=27.76 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=37.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeEEEeccCC-ceeecCCCCCCccCCcceeeccCCCCCC-CCHHHHHHHHHHHHHHCCC
Q 030735 65 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG-YVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPN 142 (172)
Q Consensus 65 LP~ltd~qi~kQV~ylL~qGw~p~lEfad~~-~~~R~~~~sp~yyd~ryWtmWkLPmfg~-td~sqVl~Eie~C~k~~P~ 142 (172)
-|+||++||.+.+..|...||... +.+ ...| + |+.+=|.. -+--.-++++.|...-||+
T Consensus 7 ~~~Ls~~ei~~~L~~l~~~gW~~~----~~~~~i~r-----------~----f~F~~f~~a~~F~~~Va~~Ae~~~HHPd 67 (105)
T 1ru0_A 7 AQWLTAEERDQLIPGLKAAGWSEL----SERDAIYK-----------E----FSFKNFNQAFGFMSRVALQAEKMNHHPE 67 (105)
T ss_dssp CSBCCHHHHHHHHHHHHHTTCEEC----SSSSCEEE-----------E----EECSSHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCCCHHHHHHHHHhCCCCCCeEE----CCCCeEEE-----------E----EEeCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 478999999999998887899862 111 2323 1 12222221 1233456777777778998
Q ss_pred Ce
Q 030735 143 AY 144 (172)
Q Consensus 143 ~Y 144 (172)
-.
T Consensus 68 i~ 69 (105)
T 1ru0_A 68 WF 69 (105)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 13
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=52.91 E-value=9.6 Score=24.30 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.7
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.++
T Consensus 64 ~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 568999999999999874
No 14
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=49.84 E-value=9.3 Score=24.72 Aligned_cols=22 Identities=18% Similarity=0.566 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHCCCCeEE
Q 030735 125 DSSQILNEIQECKKAYPNAYIR 146 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIR 146 (172)
+.+.+|.||+..+.++..+|||
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~ 36 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHHHHhHHHHHH
Confidence 5678999999999999999998
No 15
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=49.27 E-value=12 Score=23.78 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHHHh
Q 030735 67 SLSDDSIAKEIDYMLK 82 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~ 82 (172)
.|||+||..=+.||.+
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999999986
No 16
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=47.78 E-value=13 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
+.|||+||..=+.||.+.
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 578999999999999764
No 17
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=47.61 E-value=11 Score=24.61 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=16.0
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
+.|||+||..=+.||.++
T Consensus 63 ~~Lsd~ei~~l~~Yi~~~ 80 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSKA 80 (81)
T ss_dssp SSCCHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 469999999999999875
No 18
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=47.47 E-value=18 Score=25.72 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 31 ~~~~~L~~~a~~l~~~~~~~i~I~GhtD~ 59 (123)
T 3oon_A 31 KEYKKIDLIAKLLEKFKKNNILIEGHTEQ 59 (123)
T ss_dssp GGHHHHHHHHHHHHHSCSCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEEEeCC
Confidence 45789999999999999999999998543
No 19
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=46.13 E-value=21 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 28 ~~~~~L~~~a~~l~~~~~~~i~I~GhtD~ 56 (123)
T 3td3_A 28 QYKPEIAKVAEKLSEYPNATARIEGHTDN 56 (123)
T ss_dssp GGHHHHHHHHHHHHHSTTCEEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEeCC
Confidence 46688999999999999999999998443
No 20
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=45.14 E-value=21 Score=25.57 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
+..++|.+|.+.++.+|+.-|+|.|+-..
T Consensus 20 ~~~~~L~~ia~~l~~~p~~~i~I~GhtD~ 48 (118)
T 2hqs_H 20 DFAQMLDAHANFLRSNPSYKVTVEGHADE 48 (118)
T ss_dssp GGHHHHHHHHHHHHHCTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEECCC
Confidence 45689999999999999999999998543
No 21
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=43.78 E-value=21 Score=22.78 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=14.9
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.++
T Consensus 66 ~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 58999999999999763
No 22
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=43.53 E-value=15 Score=23.53 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.+.
T Consensus 63 ~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 578999999999999763
No 23
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=43.30 E-value=18 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.7
Q ss_pred CCCCChHHHHHHHHHHHhCCC
Q 030735 65 LPSLSDDSIAKEIDYMLKKGW 85 (172)
Q Consensus 65 LP~ltd~qi~kQV~ylL~qGw 85 (172)
||+=.|..|..+|..|++.|+
T Consensus 2 ~p~~~D~rl~~al~qMl~MGF 22 (52)
T 1q02_A 2 SPPEADPRLIESLSQMLSMGF 22 (52)
T ss_dssp CCTTSCHHHHHHHHHHHTTTC
T ss_pred CCCCcChHHHHHHHHHHHcCC
Confidence 799999999999999999994
No 24
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.39 E-value=32 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=20.9
Q ss_pred ccCCCCCChHHHHHHHHHHHhCCCeeEEEec
Q 030735 62 LSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD 92 (172)
Q Consensus 62 ~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfa 92 (172)
++|.| +...|.+.|+.||.++| ||=.
T Consensus 59 l~F~p--~~~~IKk~IE~LIereY---leR~ 84 (101)
T 2do7_A 59 LKFPV--KPADLKKRIESLIDRDY---MERD 84 (101)
T ss_dssp CSSCC--CHHHHHHHHHHHHHTTS---EEEC
T ss_pred cCCCC--CHHHHHHHHHHHhhhhH---HhcC
Confidence 44656 77899999999999999 5554
No 25
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=41.24 E-value=17 Score=23.48 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.++
T Consensus 61 ~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 61 RADREDLVKAIEYMLST 77 (78)
T ss_dssp TBCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 58999999999999865
No 26
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=40.64 E-value=17 Score=26.53 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.3
Q ss_pred ccccCCCCCChHHHHHHHHHHHhC
Q 030735 60 EALSYLPSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 60 eT~SyLP~ltd~qi~kQV~ylL~q 83 (172)
..+.++..|||+||..=+.||+.+
T Consensus 99 ~~mp~~~~Lsd~ei~~laaYl~~~ 122 (135)
T 1e29_A 99 DIYPEMRNYTEDDIFDVAGYTLIA 122 (135)
T ss_dssp TTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHhc
Confidence 345556689999999999999864
No 27
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=39.72 E-value=27 Score=28.24 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=41.8
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHH-HHHH
Q 030735 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNE-IQEC 136 (172)
Q Consensus 58 kfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~E-ie~C 136 (172)
.|+.+ .-|+++++++.++++.+.+.|... ++ | . -+..|++..+..+++.+ |+.+
T Consensus 48 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~--~~-----------------d--~---v~~G~l~~~~~~~~v~~~l~~~ 102 (289)
T 3pzs_A 48 QYGHW-TGCVMPASHLTDIVQGIADIDRLK--DC-----------------D--A---VLSGYIGSPEQGSHILAAVAQV 102 (289)
T ss_dssp GGSCC-CEEECCHHHHHHHHHHHHHTTCGG--GC-----------------C--E---EEECCCSSHHHHHHHHHHHHHH
T ss_pred CCCCc-ccccCCHHHHHHHHHHHHhcCCcc--CC-----------------C--E---EEECCCCCHHHHHHHHHHHHHH
Confidence 34442 347889999999999887655311 11 1 0 24566665555555555 6778
Q ss_pred HHHCCCCeEEEEeeecC
Q 030735 137 KKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 137 ~k~~P~~YIRliGfDn~ 153 (172)
++..|+. .++ +||+
T Consensus 103 ~~~~~~~--~vv-~DPV 116 (289)
T 3pzs_A 103 KQANPDA--WYF-CDPV 116 (289)
T ss_dssp HHHCTTC--EEE-ECCC
T ss_pred HhhCCCC--eEE-EcCc
Confidence 8878873 344 8964
No 28
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=39.59 E-value=23 Score=22.46 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=15.4
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.+.
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 79999999999999864
No 29
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=39.21 E-value=15 Score=23.50 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.++
T Consensus 70 ~~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 70 GRLSDADIANVAAYIADQ 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 568999999999999864
No 30
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=38.95 E-value=21 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=17.1
Q ss_pred CCCCCChHHHHHHHHHHHhC
Q 030735 64 YLPSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 64 yLP~ltd~qi~kQV~ylL~q 83 (172)
|...|||+||..=+.||.+.
T Consensus 75 ~~~~ls~~ei~~l~~yl~~~ 94 (105)
T 2ce0_A 75 FGPRLQDEEIKLLAEFVKFQ 94 (105)
T ss_dssp SSCCBCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHh
Confidence 44689999999999999875
No 31
>3h20_A Replication protein B; primase, nucleotidyltransferase, helix-bundle-domain, replic RSF1010; 1.99A {Plasmid RSF1010} PDB: 3h25_A
Probab=38.31 E-value=40 Score=29.66 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=43.9
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHHH-C-
Q 030735 63 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA-Y- 140 (172)
Q Consensus 63 SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k~-~- 140 (172)
-.+=+|+.+. ++-|.+.||.|++=-+ +|| |+|--.|.++-+ +...+-.++..-++. |
T Consensus 74 vliDDL~~~~----L~~L~a~g~~Pa~VvE----------TSP----GnyQa~~~v~~~---~~~~~~~~~ak~La~~~G 132 (323)
T 3h20_A 74 VLVDDLSEFD----LDDMKAEGREPALVVE----------TSP----KNYQAWVKVADA---AGGELRGQIARTLASEYD 132 (323)
T ss_dssp EEEEEECHHH----HHHHHHTTCCCSEEEE----------EET----TEEEEEEECCSC---CCHHHHHHHHHHHHHHTT
T ss_pred EEeecCChhh----HHHHHhCCCCCeeEEe----------cCC----CCeeEEEEeCCC---CCHHHHHHHHHHHHHHhC
Confidence 3345666655 4567778887774333 345 666666777555 233455555444443 3
Q ss_pred -------CCCeEEEEeeecCC
Q 030735 141 -------PNAYIRCLAFNNQK 154 (172)
Q Consensus 141 -------P~~YIRliGfDn~r 154 (172)
.++|-||-||-|.+
T Consensus 133 GDP~~sd~~r~~RlPGF~N~K 153 (323)
T 3h20_A 133 ADPASADSRHYGRLAGFTNRK 153 (323)
T ss_dssp CCGGGCSTTCCEECTTSBCCC
T ss_pred CCCcccCCcccccCCCcccCC
Confidence 58999999998863
No 32
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=38.30 E-value=24 Score=22.11 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.++
T Consensus 53 ~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp CSSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 468999999999999875
No 33
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=37.92 E-value=30 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 44 ~~~~~L~~ia~~L~~~p~~~i~I~GhtD~ 72 (134)
T 2aiz_P 44 EYVQILDAHAAYLNATPAAKVLVEGNTDE 72 (134)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEEEECC
Confidence 45678999999999999999999998543
No 34
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=37.72 E-value=25 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=15.5
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.+.
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999999875
No 35
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=37.46 E-value=17 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.+.
T Consensus 69 ~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 KGLSDAELKALADFILSH 86 (87)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 468999999999999764
No 36
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=37.37 E-value=26 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeec
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNN 152 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn 152 (172)
+..++|.+|.+.++.+|+.-|+|.|+-.
T Consensus 38 ~~~~~L~~ia~~l~~~~~~~i~I~GhtD 65 (129)
T 2kgw_A 38 ADYEILNRVADKLKACPDARVTINGYTD 65 (129)
T ss_dssp HHHHHHHHHHHHHHTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEeC
Confidence 4568899999999999999999999854
No 37
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=37.08 E-value=24 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.4
Q ss_pred CCChHHHHHHHHHHHh
Q 030735 67 SLSDDSIAKEIDYMLK 82 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~ 82 (172)
.|||+||..=+.||.+
T Consensus 68 ~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4899999999999975
No 38
>3iyk_G VP2; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=36.16 E-value=33 Score=32.51 Aligned_cols=54 Identities=24% Similarity=0.539 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHHhCCCe----------------eEEEeccCCcee-ecCCCCCCccCCcceeeccCCCCCCC
Q 030735 67 SLSDDSIAKEIDYMLKKGWI----------------PCLEFDEVGYVH-RENSKMPGYYDGRYWTMWKLPMFGCN 124 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qGw~----------------p~lEfad~~~~~-R~~~~sp~yyd~ryWtmWkLPmfg~t 124 (172)
.+.|+.-.+=|+-+|+.||. --++|+.+.+.- |.+-+.|.|||-.= +.|||++.
T Consensus 459 k~De~kY~eMi~riI~gGW~~k~fk~~kIl~e~gni~~~DFeKDAyld~~s~lvlP~YYdKwI----~spmf~ak 529 (600)
T 3iyk_G 459 KFDDVAYGQMINEMINGGWNQEQFKMHKILKSEGNVLTIDFEKDAKLTTNEGVTMPEYFNKWI----IAPMFNAK 529 (600)
T ss_pred ecCHHHHHHHHHHHHhCCccccccchhheeccCCceEEEEecceeeecCCCcEeCccccccee----ecccccce
Confidence 35666667779999999994 245677543321 34458899999744 78999986
No 39
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=35.10 E-value=26 Score=27.93 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCC
Q 030735 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 119 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLP 119 (172)
-|+.|.+..=+++|.++| -.|+.|++ + +++|-+|+-|
T Consensus 68 ~Ls~e~~~~il~~L~~~g---~aew~d~~---~----------~~~~I~Wrt~ 104 (176)
T 3cuq_C 68 KLPVESIQIVLEELRKKG---NLEWLDKS---K----------SSFLIMWRRP 104 (176)
T ss_dssp ECCHHHHHHHHHHHHHHT---SEEECSSS---S----------SEEEECSSCH
T ss_pred cCCHHHHHHHHHHHHhcC---CceeecCC---C----------CEEEEEeCCH
Confidence 578888888889999998 47787765 3 6788999865
No 40
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=35.01 E-value=18 Score=25.80 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCC-CCHHHHHHHHHHHHHHCCCCe
Q 030735 66 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPNAY 144 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~-td~sqVl~Eie~C~k~~P~~Y 144 (172)
|+||++||.+.+..| .||..- .+.....| + ++.+-|.. -+--.-++++.|-..-||+-.
T Consensus 4 ~~Ls~~ei~~~L~~l--~gW~~~---~~~~~l~r-----------~----f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~ 63 (97)
T 3jst_A 4 NRLTESEMNEALRAL--DGWQKV---DGREAITR-----------S----FKFKDFSTAFGFMAQAALYAEKLDHHPEWF 63 (97)
T ss_dssp SCCCHHHHHHHHHTS--TTCEEC---TTSSCEEE-----------E----EECSSHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCHHHHHHHhhcC--CCCeEe---CCCCeEEE-----------E----EEeCCHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 689999999888766 899764 12122333 1 23433322 123344677778888889754
Q ss_pred E
Q 030735 145 I 145 (172)
Q Consensus 145 I 145 (172)
+
T Consensus 64 ~ 64 (97)
T 3jst_A 64 N 64 (97)
T ss_dssp E
T ss_pred E
Confidence 3
No 41
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=34.72 E-value=64 Score=22.33 Aligned_cols=66 Identities=9% Similarity=0.189 Sum_probs=40.4
Q ss_pred cCCccccccccCCCCCCh-HHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHH
Q 030735 53 PINNKKFEALSYLPSLSD-DSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILN 131 (172)
Q Consensus 53 p~~~kkfeT~SyLP~ltd-~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~ 131 (172)
|++..++.++ +-.|++ +++.+.| ++|=..-|+|-.+. |..=.+...
T Consensus 11 ~~~~~~~~~m--v~~l~~~~~f~~~~----~~~k~vvv~F~a~w---------------------------C~~C~~~~p 57 (125)
T 1r26_A 11 GIRMRARYPS--VVDVYSVEQFRNIM----SEDILTVAWFTAVW---------------------------CGPCKTIER 57 (125)
T ss_dssp -CCCSSCCSC--CEEECCHHHHHHHH----HSSSCEEEEEECTT---------------------------CHHHHHTHH
T ss_pred ceeeeccccc--eEECCCHHHHHHHH----ccCCEEEEEEECCc---------------------------CHhHHHHHH
Confidence 4555666665 667888 7776654 56655556665432 333344555
Q ss_pred HHHHHHHHCCCCeEEEEeeecC
Q 030735 132 EIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 132 Eie~C~k~~P~~YIRliGfDn~ 153 (172)
++++-.++|++ |+++.+|-.
T Consensus 58 ~l~~l~~~~~~--v~~~~vd~d 77 (125)
T 1r26_A 58 PMEKIAYEFPT--VKFAKVDAD 77 (125)
T ss_dssp HHHHHHHHCTT--SEEEEEETT
T ss_pred HHHHHHHHCCC--CEEEEEECC
Confidence 56666778876 778888754
No 42
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=34.58 E-value=30 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEeeecCC
Q 030735 125 DSSQILNEIQECKKAYP-NAYIRCLAFNNQK 154 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P-~~YIRliGfDn~r 154 (172)
+..++|.+|.+.++.+| +..|+|.|+=...
T Consensus 18 ~~~~~L~~ia~~l~~~p~~~~i~I~GhtD~~ 48 (138)
T 3cyp_B 18 DMMLYIERIAKIIQKLPKRVHINVRGFTDDT 48 (138)
T ss_dssp HHHHHHHHHHHHHTTSCTTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEecCCC
Confidence 45678999999999999 9999999985543
No 43
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=33.24 E-value=27 Score=22.41 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.++
T Consensus 67 ~ls~~ei~~l~~yi~~~ 83 (85)
T 3cu4_A 67 MIPPADALKIGEYVVAS 83 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 69999999999999864
No 44
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=32.73 E-value=29 Score=23.95 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=21.5
Q ss_pred eeccCCccccccc-cCCCCCChHHHHHHHHHH
Q 030735 50 TWNPINNKKFEAL-SYLPSLSDDSIAKEIDYM 80 (172)
Q Consensus 50 vw~p~~~kkfeT~-SyLP~ltd~qi~kQV~yl 80 (172)
+--.-..++|||. =-=|+|+||++..-|+-+
T Consensus 37 ~vr~d~~r~YE~m~Il~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 37 VVASTTPGRYEVNIVLNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEECSSTTEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHhccCCCceEEEEEECCCCCHHHHHHHHHHH
Confidence 3344556899994 445889999888766543
No 45
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=32.07 E-value=63 Score=29.45 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCC----CCCCCHHH---HHHH-HHHHHHHC
Q 030735 69 SDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPM----FGCNDSSQ---ILNE-IQECKKAY 140 (172)
Q Consensus 69 td~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPm----fg~td~sq---Vl~E-ie~C~k~~ 140 (172)
+-++.++.|+|+...+ ..++++.| +++ -.|.=|.-+||.+|--+- +|-.++++ ...+ -.+.|+.+
T Consensus 150 ~~~ea~d~veY~n~~~---~t~~~~lR---a~~-G~~~P~~vkyweiGNE~~G~~q~G~~t~e~Y~~~~~~~a~Aik~~d 222 (504)
T 3ug3_A 150 TLDEALHWLEYCNGKG---NTYYAQLR---RKY-GHPEPYNVKFWGIGNEMYGEWQVGHMTADEYARAAKEYTKWMKVFD 222 (504)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHH---HHT-TCCSCCCCCEEEECSSTTSTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhcCCC---CChHHHHH---HHc-CCCCCCCccEEEecCcccccccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5789999999998875 23344433 222 122337899999887642 13334443 3334 45667778
Q ss_pred CCCeEEEEeeec
Q 030735 141 PNAYIRCLAFNN 152 (172)
Q Consensus 141 P~~YIRliGfDn 152 (172)
|+ |+|||-..
T Consensus 223 P~--I~lia~G~ 232 (504)
T 3ug3_A 223 PT--IKAIAVGC 232 (504)
T ss_dssp TT--CEEEECCC
T ss_pred CC--cEEEEECC
Confidence 88 78887543
No 46
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum}
Probab=31.66 E-value=1.1e+02 Score=28.36 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=51.0
Q ss_pred eeccCCccccccccCCCCCChHH--HHHHHHHHHhC-CCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCC-CC--
Q 030735 50 TWNPINNKKFEALSYLPSLSDDS--IAKEIDYMLKK-GWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF-GC-- 123 (172)
Q Consensus 50 vw~p~~~kkfeT~SyLP~ltd~q--i~kQV~ylL~q-Gw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmf-g~-- 123 (172)
-|.++-.+|=.-||--|+|+|.. +.+=|.+|+++ |- ++ .| |.-+||.||.-|.+ +.
T Consensus 127 rw~~v~~~k~~~~~~~pd~~d~~v~~~e~v~~l~~~~G~------~~----------~p--~~Vkyw~lgNEpdlW~~tH 188 (517)
T 3ik2_A 127 KWKKVEFNKNGPLSLTPDTTDGSVYMDEFVNYLVNKYGS------AS----------GS--KGIKGYSLDNEPSLWPSTH 188 (517)
T ss_dssp TEEEEESCCSSCCCSSCCSSSSEEEHHHHHHHHHHHHCC------TT----------ST--TSCCEEEESSCGGGHHHHC
T ss_pred ccceeeccCCCcccCCCCcCCcceeHHHHHHHHHHhcCC------CC----------CC--CceeEEecCCCcccccccc
Confidence 57777666766789899999883 45558888774 30 11 12 44799999999863 22
Q ss_pred -------CCHHHH---HHHH-HHHHHHCCCCeEEEEee
Q 030735 124 -------NDSSQI---LNEI-QECKKAYPNAYIRCLAF 150 (172)
Q Consensus 124 -------td~sqV---l~Ei-e~C~k~~P~~YIRliGf 150 (172)
.++++. ..|. .+.|..-|+ |+|+|-
T Consensus 189 ~dvhp~~~t~eEY~~~~~~~AkAmK~vDP~--ikl~GP 224 (517)
T 3ik2_A 189 PLIHPDKTKCSEVLDKDTQLAQVVKKIDPA--AETFGP 224 (517)
T ss_dssp TTTCCSCCCHHHHHHHHHHHHHHHHHHCTT--CEEEEE
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhhCCC--cEEEcc
Confidence 234433 3333 355666777 777764
No 47
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=31.50 E-value=35 Score=21.43 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||...
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999999864
No 48
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=31.11 E-value=34 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCCChHHHHHHHHHHHhCC
Q 030735 66 PSLSDDSIAKEIDYMLKKG 84 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~qG 84 (172)
..|||+||..=+.||.+..
T Consensus 65 ~~ls~~ei~~l~~yl~~l~ 83 (87)
T 1cno_A 65 TALSDADIANLAAYYASNP 83 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSC
T ss_pred hhCCHHHHHHHHHHHHhCC
Confidence 4689999999999998764
No 49
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=30.28 E-value=38 Score=24.91 Aligned_cols=29 Identities=10% Similarity=0.509 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCC
Q 030735 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVG 95 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qGw~p~lEfad~~ 95 (172)
..++++....++.|.++|++-|+.|.+.+
T Consensus 27 ~Ise~~~~~il~~L~d~GyI~Gv~~~~~~ 55 (102)
T 2hgc_A 27 GVTEDQFDDAVNFLKREGYIIGVHYSDDR 55 (102)
T ss_dssp TSCHHHHHHHHHHHHHHTSEECCEESSSS
T ss_pred CCCHHHHHHHHHHHHHCCCccceEEEeCc
Confidence 35889999999999999999999998664
No 50
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=30.24 E-value=31 Score=23.42 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||+++
T Consensus 81 ~Lsd~ei~~l~~Yi~~~ 97 (99)
T 3dp5_A 81 MIPPADALKIGEYVVAS 97 (99)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 58999999999999863
No 51
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=30.20 E-value=28 Score=28.20 Aligned_cols=33 Identities=6% Similarity=0.301 Sum_probs=23.5
Q ss_pred CCCCCCHH--HHHHHHHHHHHHCCCCeEEEEeeecCC
Q 030735 120 MFGCNDSS--QILNEIQECKKAYPNAYIRCLAFNNQK 154 (172)
Q Consensus 120 mfg~td~s--qVl~Eie~C~k~~P~~YIRliGfDn~r 154 (172)
.|..+|.. .|+.++++.-.. |+. |-+||||+..
T Consensus 192 I~~~~d~~a~Gv~~a~~e~g~~-P~d-v~viG~D~~~ 226 (318)
T 2fqx_A 192 IFQVAGGTGNGVIKEARDRRLN-GQD-VWVIGVDRDQ 226 (318)
T ss_dssp EEEECGGGHHHHHHHHHHHHHT-TCC-CEEEEEESCC
T ss_pred EEECCCCCchHHHHHHHhhhhc-cCC-cEEEEEecch
Confidence 34455643 778777777667 765 8999999863
No 52
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=30.16 E-value=46 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
+..+.|.+|.+.++.+|+.-|+|.|+-..
T Consensus 48 ~~~~~L~~ia~~L~~~~~~~i~I~GhtD~ 76 (149)
T 2k1s_A 48 AGANTLTGVAMVLKEYPKTAVNVIGYTDS 76 (149)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEcCC
Confidence 45688999999999999999999998543
No 53
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=30.12 E-value=26 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCC
Q 030735 80 MLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 119 (172)
Q Consensus 80 lL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLP 119 (172)
=|++|=.+-|+|.++.++. +.+.||.|-|||
T Consensus 130 ELh~GDsIflnft~~~qV~---------k~nTYfGi~kL~ 160 (166)
T 2r32_A 130 ELHVGDTIDLIFNSEHQVL---------KNNTYWGIILLA 160 (166)
T ss_dssp EECTTCEEEEEESSGGGBC---------TTSCEEEEEEEE
T ss_pred EecCCCEEEEEeCCHHHcc---------ccCceEEEEEcC
Confidence 3678999999999998874 368999999983
No 54
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=29.97 E-value=17 Score=26.22 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=35.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeEEEeccCC-ceeecCCCCCCccCCcceeeccCCCCCC-CCHHHHHHHHHHHHHHCCC
Q 030735 65 LPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG-YVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPN 142 (172)
Q Consensus 65 LP~ltd~qi~kQV~ylL~qGw~p~lEfad~~-~~~R~~~~sp~yyd~ryWtmWkLPmfg~-td~sqVl~Eie~C~k~~P~ 142 (172)
-++||++||.+.+..| .||... +.+ ...| + |+.+=|.. -+--.-++++.|...-||+
T Consensus 6 ~~~Ls~~ei~~~L~~l--~gW~~~----~~~~~i~r-----------~----f~F~~f~~a~~F~~~Va~~Ae~~~HHPd 64 (104)
T 2v6u_A 6 RLAANSARLLQLHKTV--PQWHLT----DGHLSIKR-----------K----FQFSDFNEAWGFMSRVALYADKVDHHPN 64 (104)
T ss_dssp CCCTTCHHHHHHHTTS--TTSEEC----GGGCCEEE-----------E----EECSSHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCCCHHHHHHHhhcC--CCCeEe----CCcCeEEE-----------E----EEeCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3789999999887765 699862 221 2333 1 23332222 1233456677777778898
Q ss_pred CeE
Q 030735 143 AYI 145 (172)
Q Consensus 143 ~YI 145 (172)
-.+
T Consensus 65 i~~ 67 (104)
T 2v6u_A 65 WYN 67 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 55
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=29.95 E-value=32 Score=21.95 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHHHh
Q 030735 66 PSLSDDSIAKEIDYMLK 82 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~ 82 (172)
..|||+||..=+.||.+
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 35899999999999975
No 56
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=29.60 E-value=24 Score=21.41 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhC
Q 030735 71 DSIAKEIDYMLKK 83 (172)
Q Consensus 71 ~qi~kQV~ylL~q 83 (172)
.||.++|.|||.+
T Consensus 5 aqikkeiayllak 17 (35)
T 1rh4_A 5 AQIKKEIAYLLAK 17 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999864
No 57
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=29.12 E-value=80 Score=22.06 Aligned_cols=29 Identities=3% Similarity=0.043 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCCeEEEEee
Q 030735 122 GCNDSSQILNEIQECKK-AYPNAYIRCLAF 150 (172)
Q Consensus 122 g~td~sqVl~Eie~C~k-~~P~~YIRliGf 150 (172)
...|...+.....+..+ .+++.-||+||+
T Consensus 69 pt~~~~~i~~~a~~Ll~~~~~~~~vRllGV 98 (115)
T 1unn_C 69 PRLNKADLIATARKTWDERRGGRGVRLVGL 98 (115)
T ss_dssp SBCCHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CcCCHHHHHHHHHHHHHhhhcCCCEEEEEE
Confidence 34566666666666655 567778999997
No 58
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=27.88 E-value=37 Score=27.88 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEE
Q 030735 123 CNDSSQILNEIQECKKAYPNAYIRCL 148 (172)
Q Consensus 123 ~td~sqVl~Eie~C~k~~P~~YIRli 148 (172)
+.....||.||.+.+.+||++.|=|.
T Consensus 79 ~~~~~~~L~~i~~fL~~~P~EvVil~ 104 (274)
T 2plc_A 79 NASLSGVLETITQFLKKNPKETIIMR 104 (274)
T ss_dssp EEEHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEE
Confidence 55678999999999999999987554
No 59
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=27.21 E-value=48 Score=21.25 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.+.
T Consensus 66 ~ls~~ei~~l~~yl~~~ 82 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQ 82 (90)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 58999999999999764
No 60
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=26.99 E-value=36 Score=21.90 Aligned_cols=17 Identities=12% Similarity=0.470 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.++
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999999764
No 61
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=26.81 E-value=34 Score=24.24 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.++
T Consensus 105 ~~Lsd~ei~alaaYl~~~ 122 (137)
T 1mz4_A 105 RNLTEKDLVAIAGHILVE 122 (137)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 469999999999999874
No 62
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=26.74 E-value=56 Score=26.16 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=32.8
Q ss_pred ccccCCCCCChHHHHH-HHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHH
Q 030735 60 EALSYLPSLSDDSIAK-EIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 138 (172)
Q Consensus 60 eT~SyLP~ltd~qi~k-QV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k 138 (172)
-||+|+..-.-++-.+ +|+.|.+.|+.++. .. +. |+ . |-+..-+.+++.+||+.|.+
T Consensus 55 ATF~Fv~g~~~~~~p~~~~~~i~~~GheIg~----Ht--~~-H~--------------~-~~l~~ls~~~~~~ei~~~~~ 112 (254)
T 2vyo_A 55 ATFSFTVNQKAVGNVGQLYRRAVEEGHNVAL----RV--DP-SM--------------D-EGYQCLSQDALENNVDREID 112 (254)
T ss_dssp CEEEECCSSCCCGGGTHHHHHHHHTTCEEEE----EC--CG-GG--------------T-TCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEccChHHhHCHHHHHHHHHhCCCEEEe----cC--CC-CC--------------C-cCcccCCHHHHHHHHHHHHH
Confidence 4564554433222234 78888999975543 22 10 00 0 11122368899999999987
Q ss_pred HC
Q 030735 139 AY 140 (172)
Q Consensus 139 ~~ 140 (172)
..
T Consensus 113 ~l 114 (254)
T 2vyo_A 113 TI 114 (254)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 63
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=26.50 E-value=50 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.++
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (91)
T 1ls9_A 69 RLDEDDIEAVSNYVYDQ 85 (91)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 58999999999999864
No 64
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=25.99 E-value=1.5e+02 Score=25.46 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHHHhC-CCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHHHCCCC
Q 030735 65 LPSLSDDSIAKEIDYMLKK-GWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNA 143 (172)
Q Consensus 65 LP~ltd~qi~kQV~ylL~q-Gw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k~~P~~ 143 (172)
.++.+.|++.++++.++++ ||.- + + +|+. .|+.+-++-|++.+++.|+.
T Consensus 164 ~~~~~~e~~~~~a~~~~~~~G~~~---------~-K----------------~KvG----~~~~~d~~~v~avR~~~~~~ 213 (398)
T 4dye_A 164 TPADLPKAMAEHAVRVVEEGGFDA---------V-K----------------LKGT----TDCAGDVAILRAVREALPGV 213 (398)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCCSE---------E-E----------------EECC----SCHHHHHHHHHHHHHHCTTS
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCE---------E-E----------------EecC----CCHHHHHHHHHHHHHhCCCC
Confidence 3345569999999999999 9631 1 1 3443 57888888899999999775
Q ss_pred eEEEEeeecCC
Q 030735 144 YIRCLAFNNQK 154 (172)
Q Consensus 144 YIRliGfDn~r 154 (172)
=+| +|.+.
T Consensus 214 ~l~---vDaN~ 221 (398)
T 4dye_A 214 NLR---VDPNA 221 (398)
T ss_dssp EEE---EECTT
T ss_pred eEE---eeCCC
Confidence 544 57653
No 65
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.83 E-value=45 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=21.6
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHhCCCee
Q 030735 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIP 87 (172)
Q Consensus 56 ~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p 87 (172)
.|||.+ .++.+..+-.|+++||+++|+..
T Consensus 121 ~Kk~~~---~~~~~~~~k~K~~~~L~rrGF~~ 149 (162)
T 3dfg_A 121 RRRFGE---DGPVDLAQRRKAADLLARRGFDG 149 (162)
T ss_dssp HHHHCT---TCCCSHHHHHHHHHHHHHTTCCH
T ss_pred HHhcCC---CCCCCHHHHHHHHHHHHHCCCCH
Confidence 367776 23445678889999999999853
No 66
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=25.37 E-value=64 Score=23.92 Aligned_cols=29 Identities=3% Similarity=0.083 Sum_probs=26.1
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhCCCe
Q 030735 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWI 86 (172)
Q Consensus 58 kfeT~SyLP~ltd~qi~kQV~ylL~qGw~ 86 (172)
+-.||--+.+++.+++..-|++|+.+||.
T Consensus 55 ~l~tfGigk~~s~~~w~~lirqLi~~G~L 83 (134)
T 3aaf_A 55 RHSLFGTGKDQTESWWKAFSRQLITEGFL 83 (134)
T ss_dssp GSTTTTTTTTSCHHHHHHHHHHHHHTTSE
T ss_pred CCCccCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 44788889999999999999999999984
No 67
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=25.36 E-value=35 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.+.
T Consensus 82 ~ls~~ei~~l~~yl~sl 98 (99)
T 1w2l_A 82 SLSEREVAALIEFIKQQ 98 (99)
T ss_dssp GCCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 59999999999999864
No 68
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=24.95 E-value=1.3e+02 Score=19.60 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=37.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHHH
Q 030735 60 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139 (172)
Q Consensus 60 eT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k~ 139 (172)
++=|....++++++.+.|+ +|-..-|.|.... |..-.+...++++..++
T Consensus 6 ~~~~~~~~~~~~~f~~~~~----~~k~vlv~f~a~~---------------------------C~~C~~~~~~l~~l~~~ 54 (112)
T 1syr_A 6 HHHMVKIVTSQAEFDSIIS----QNELVIVDFFAEW---------------------------CGPCKRIAPFYEECSKT 54 (112)
T ss_dssp ---CCEEECSHHHHHHHHH----HCSEEEEEEECTT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred cceeEEEECCHHHHHHHHc----cCCeEEEEEECCC---------------------------CHHHHHHHHHHHHHHHH
Confidence 3446677788888887663 5555556665432 33344555666777778
Q ss_pred CCCCeEEEEeeecC
Q 030735 140 YPNAYIRCLAFNNQ 153 (172)
Q Consensus 140 ~P~~YIRliGfDn~ 153 (172)
|++ |.++.+|-.
T Consensus 55 ~~~--v~~~~vd~~ 66 (112)
T 1syr_A 55 YTK--MVFIKVDVD 66 (112)
T ss_dssp CTT--SEEEEEETT
T ss_pred cCC--CEEEEEECC
Confidence 887 777777754
No 69
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Probab=24.94 E-value=28 Score=31.03 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCC--CCCCHHH---HHHHHHHHHHHCCCC
Q 030735 69 SDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMF--GCNDSSQ---ILNEIQECKKAYPNA 143 (172)
Q Consensus 69 td~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmf--g~td~sq---Vl~Eie~C~k~~P~~ 143 (172)
+-++.++.|+|+-.-+ .-++++.| +++. .|.=|.-+||.+|--+-. |-.++.+ ...+.....|++++-
T Consensus 134 ~~~ea~d~veY~n~~~---~t~w~~lR---a~~G-~~eP~~vkyweiGNE~~g~~g~~~~~~Y~~~~~~~a~a~k~~~dp 206 (496)
T 2vrq_A 134 TVQEMSEWVEYITFDG---ESPMANWR---RENG-REKPWRIKYWGVGNQNWGCGGNMRAEYYADLYRQFQTYLRNYGDN 206 (496)
T ss_dssp CHHHHHHHHHHHHCCS---BSHHHHHH---HHTT-CCSCCCCCEEEECSCTTTTTTCCCHHHHHHHHHHHHHTCCCCTTC
T ss_pred cHHHHHHHHHHhCCCC---CChHHHHH---HHcC-CCCCCCceEEEEcCcccccCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4588888999986543 24444433 2221 133378899998887632 2234444 455777777888777
Q ss_pred eEEEEe
Q 030735 144 YIRCLA 149 (172)
Q Consensus 144 YIRliG 149 (172)
-|+||+
T Consensus 207 ~i~~ia 212 (496)
T 2vrq_A 207 KLHKIA 212 (496)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 788875
No 70
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=24.92 E-value=95 Score=25.87 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.3
Q ss_pred cceeeccCCCCCCCCHHHHHHH-HHHHHHHCCCCeEEEEeee
Q 030735 111 RYWTMWKLPMFGCNDSSQILNE-IQECKKAYPNAYIRCLAFN 151 (172)
Q Consensus 111 ryWtmWkLPmfg~td~sqVl~E-ie~C~k~~P~~YIRliGfD 151 (172)
.+|+.|. ..+..+++.+ |++..++|||--|.+.-++
T Consensus 66 t~w~~~~-----~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~ 102 (456)
T 4g68_A 66 TFWNLFT-----GEPAKTKVKEIIDQWNKENPNVQIVESVTE 102 (456)
T ss_dssp EEEECCC-----STTHHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred EEeeCCC-----CchHHHHHHHHHHHHHHHCcCeEEEEEECC
Confidence 5677553 3345566777 7889999999888776543
No 71
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=24.70 E-value=54 Score=23.23 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=15.9
Q ss_pred CCChHHHHHHHHHHHhCC
Q 030735 67 SLSDDSIAKEIDYMLKKG 84 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qG 84 (172)
.|||+||..=|.||....
T Consensus 119 ~Ls~~ei~~l~aYl~sl~ 136 (137)
T 2c1d_B 119 ILNAQQIEDVVAFLVTLK 136 (137)
T ss_dssp SSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcc
Confidence 799999999999998753
No 72
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=24.33 E-value=51 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.2
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHHCCC
Q 030735 115 MWKLPMFGCNDSSQILNEIQECKKAYPN 142 (172)
Q Consensus 115 mWkLPmfg~td~sqVl~Eie~C~k~~P~ 142 (172)
+|.+-+-...+|.+|+.||...+.+.-=
T Consensus 28 ~~~v~tTS~~~P~eIm~eI~rvL~~~gi 55 (120)
T 3ose_A 28 TWSMKTTSSMDPNDMMREIRKVLDANNC 55 (120)
T ss_dssp CTTCCCEECSCHHHHHHHHHHHHHHTTC
T ss_pred eeeecCcccCCHHHHHHHHHHHHHHCCC
Confidence 4788888888999999999999998643
No 73
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=24.15 E-value=59 Score=20.66 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.+.
T Consensus 67 ~ls~~ei~~l~~yl~~~ 83 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYDQ 83 (89)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 58999999999999764
No 74
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=23.82 E-value=62 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
+..++|.+|.+.++.||+.-|+|.|+-..
T Consensus 68 ~~~~~L~~la~~l~~~~~~~i~I~GhTD~ 96 (169)
T 3ldt_A 68 ICYPGLNNVIRLLNFYPQSTIYVAGFTDN 96 (169)
T ss_dssp HHCHHHHHHHHHHTTCTTSCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeEeCC
Confidence 34578999999999999999999998544
No 75
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.30 E-value=53 Score=24.70 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=20.9
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHhCCCee
Q 030735 56 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIP 87 (172)
Q Consensus 56 ~kkfeT~SyLP~ltd~qi~kQV~ylL~qGw~p 87 (172)
.|||.+ .+ +-+..+-.|+++||+++|+..
T Consensus 119 ~kk~~~--~~-~~~~~~~~K~~~~L~rrGF~~ 147 (159)
T 3c1d_A 119 TRKYGE--PL-PTVFSEKVKIQRFLLYRGYLM 147 (159)
T ss_dssp HHHHCS--SC-CCSHHHHHHHHHHHHHTTCCH
T ss_pred HHHcCC--CC-CCCHHHHHHHHHHHHHCCCCH
Confidence 377766 22 334567889999999999854
No 76
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=23.25 E-value=65 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHCCCC-eEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAYPNA-YIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~P~~-YIRliGfDn~ 153 (172)
+..++|.+|.+.++.+|+. -|+|.|+=..
T Consensus 46 ~~~~~L~~ia~~l~~~~~~~~i~I~GhTD~ 75 (166)
T 3s06_A 46 DMMLYIERIAKIIQKLPKRVHINVRGFTDD 75 (166)
T ss_dssp GGHHHHHHHHHHGGGSCTTCEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEeeCC
Confidence 4678999999999999975 8999998543
No 77
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=23.24 E-value=56 Score=20.97 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHHHHhCC
Q 030735 67 SLSDDSIAKEIDYMLKKG 84 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qG 84 (172)
.|||+||..=+.||....
T Consensus 57 ~ls~~ei~~l~~yl~~~~ 74 (80)
T 1wve_C 57 YVDDESLTQVAEYLSSLP 74 (80)
T ss_dssp TSCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCc
Confidence 589999999999998864
No 78
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=22.91 E-value=1.2e+02 Score=24.39 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=37.9
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHH
Q 030735 58 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 137 (172)
Q Consensus 58 kfeT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~ 137 (172)
.|..+..+| ++ ++|.+|++.+...+. +++ . .|..|++. .+.+..|.+..
T Consensus 48 g~~~~~~~~-~~-~~~~~~~~~~~~~d~----~~d-------------------a---ik~G~l~s---~~~i~~v~~~l 96 (282)
T 3h74_A 48 GYGTPAVVD-LS-TWLPQVFAHWTRAQL----HFD-------------------Q---ALIGYVGS---VALCQQITTYL 96 (282)
T ss_dssp SSSSCCEEC-CT-TTHHHHHHHHHHTTC----CCS-------------------E---EEECCCCS---HHHHHHHHHHH
T ss_pred Ccceeeeec-Ch-HHHHHHHHHHHHcCC----ccC-------------------E---EEECCCCC---HHHHHHHHHHH
Confidence 344433333 34 788899988875431 111 1 46677753 46677788888
Q ss_pred HHCCCCeEEEEeeecC
Q 030735 138 KAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 138 k~~P~~YIRliGfDn~ 153 (172)
+++|+. .++ ||++
T Consensus 97 ~~~~~~--~vv-~DPv 109 (282)
T 3h74_A 97 EQQTLS--LLV-VDPV 109 (282)
T ss_dssp HHSCCS--EEE-ECCC
T ss_pred HHCCCC--cEE-EcCe
Confidence 888763 444 9996
No 79
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=22.86 E-value=60 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHC--CCCeEEEEeeecC
Q 030735 125 DSSQILNEIQECKKAY--PNAYIRCLAFNNQ 153 (172)
Q Consensus 125 d~sqVl~Eie~C~k~~--P~~YIRliGfDn~ 153 (172)
+..++|.+|.+.++.+ |+..|+|.|+-..
T Consensus 36 ~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~ 66 (148)
T 4erh_A 36 EGQQALDQLYSQLSNLDPKDGSVVVLGFTDR 66 (148)
T ss_dssp HHHHHHHHHHHHHTCCCTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEEECCC
Confidence 4568899999999999 8999999998543
No 80
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=22.75 E-value=72 Score=25.94 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCC
Q 030735 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLP 119 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLP 119 (172)
-|+.+.+..=+++|+++|. .|+.|++.. + .+++ =.+++|-+|+-|
T Consensus 84 rLs~e~~~~Il~~Lv~~g~---aew~d~~~~-~---~~~~-~k~~~~I~Wrtp 128 (202)
T 1xb4_A 84 SVSQVFIDEIWSQMTKEGK---CLPIDQSGR-R---SSNT-TTTRYFILWKSL 128 (202)
T ss_dssp ECCHHHHHHHHHHHHHTTS---EEEESSSSB-C---C--C-CCCEEEECSSCH
T ss_pred cCCHHHHHHHHHHHHhcCC---eEEeCCCCc-c---cccc-cCceEEEEeCCH
Confidence 5788888888899999994 677765421 1 1110 025799999864
No 81
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=22.73 E-value=56 Score=21.98 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC
Q 030735 121 FGCNDSSQILNEIQECKKAYPNA 143 (172)
Q Consensus 121 fg~td~sqVl~Eie~C~k~~P~~ 143 (172)
-..-|++++++||++..++|-.+
T Consensus 49 ~~gid~~~ll~~Ln~~~~~~~~~ 71 (73)
T 2k5e_A 49 AHGLNVEDILRDLNALALEHHHH 71 (73)
T ss_dssp HTTCCHHHHHHHHHHHHHCCCCS
T ss_pred HcCCCHHHHHHHHHHHHHHhhcc
Confidence 33449999999999999998654
No 82
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=22.57 E-value=56 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||...
T Consensus 103 ~~Ls~~ei~~l~~Yl~~l 120 (129)
T 1f1c_A 103 RNISEDDLYNVAGYILLQ 120 (129)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 368999999999999764
No 83
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=22.12 E-value=1.6e+02 Score=18.77 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEEeeecC
Q 030735 123 CNDSSQILNEIQECKKAYPNAYIRCLAFNNQ 153 (172)
Q Consensus 123 ~td~sqVl~Eie~C~k~~P~~YIRliGfDn~ 153 (172)
|..-.+...++++-.++|++. |+++.+|-.
T Consensus 37 C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~ 66 (115)
T 1thx_A 37 CGPCQLMSPLINLAANTYSDR-LKVVKLEID 66 (115)
T ss_dssp CTTHHHHHHHHHHHHHHTTTT-CEEEEEEST
T ss_pred CHHHHHhHHHHHHHHHHhCCc-EEEEEEEcC
Confidence 555566777778888899876 889988854
No 84
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=21.89 E-value=53 Score=25.86 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHHhCC
Q 030735 65 LPSLSDDSIAKEIDYMLKKG 84 (172)
Q Consensus 65 LP~ltd~qi~kQV~ylL~qG 84 (172)
|||||+|+..+ |+..|..|
T Consensus 2 ~~~lt~~~~~~-~~~~l~~~ 20 (226)
T 1th0_A 2 LLELTEDMEKE-ISNALGHG 20 (226)
T ss_dssp CCCCCHHHHHH-HHHHHSSS
T ss_pred CCCCCHHHHHH-HHHHhccC
Confidence 79999998876 67766544
No 85
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=21.57 E-value=43 Score=24.45 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhCCCeeEEEeccCCcee---e-cC-----CCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHHH
Q 030735 70 DDSIAKEIDYMLKKGWIPCLEFDEVGYVH---R-EN-----SKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139 (172)
Q Consensus 70 d~qi~kQV~ylL~qGw~p~lEfad~~~~~---R-~~-----~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k~ 139 (172)
++.+..|++.|-++||.+.-+|.|.+--. | +. ...+ +..=-.|++--|+- +..+++.-++.|.+.
T Consensus 12 ~Q~l~~Q~~~l~~~g~~~~~~~~D~~Sg~~~~Rp~l~~ll~~~~~----gd~lvV~~ldRL~R-~~~d~~~~~~~l~~~ 85 (139)
T 2gm5_A 12 QQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVKE----GDVILVKKLDHLGR-DTADMIQLIKEFDAQ 85 (139)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEC-----CCHHHHHHHHHCCT----TCEEEESSGGGTSS-SHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHCCCceeEEEEECCCCCccccHHHHHHHHHHHC----CCEEEEEecccccC-CHHHHHHHHHHHHhC
Confidence 34588999999999998877888753111 1 00 0122 23556688888876 688888888887654
No 86
>3v1h_A 1-phosphatidylinositol phosphodiesterase; PI-cation, TIM barrel, phospholipase, lyase; HET: INS; 1.90A {Staphylococcus aureus subsp} PDB: 4f2b_A* 4f2u_A* 4f2t_A 3v18_A 3v16_A*
Probab=21.43 E-value=57 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEE
Q 030735 123 CNDSSQILNEIQECKKAYPNAYIRCL 148 (172)
Q Consensus 123 ~td~sqVl~Eie~C~k~~P~~YIRli 148 (172)
+....+||.||.+.+.+||++.|=|.
T Consensus 84 ~~~l~dvL~~i~~FL~~hP~EvVil~ 109 (306)
T 3v1h_A 84 HHELGKFLDDAKYYLSAYPNETIVMS 109 (306)
T ss_dssp EEEHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 55678999999999999999998654
No 87
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=21.38 E-value=2.4e+02 Score=23.63 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEE
Q 030735 67 SLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIR 146 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k~~P~~YIR 146 (172)
-.+.+++.++++.++++||.- + + +|+ |..++.+-++-|++.+++.|+. +
T Consensus 141 ~~~~e~~~~~a~~~~~~G~~~---------i-K----------------~Kv---g~~~~~~d~~~v~avr~~~~~~--~ 189 (365)
T 3ik4_A 141 AGDEVHAAASAKAILARGIKS---------I-K----------------VKT---AGVDVAYDLARLRAIHQAAPTA--P 189 (365)
T ss_dssp CSCHHHHHHHHHHHHHTTCCC---------E-E----------------EEC---CSSCHHHHHHHHHHHHHHSSSC--C
T ss_pred CCCHHHHHHHHHHHHHcCCCE---------E-E----------------EEe---CCCCHHHHHHHHHHHHHhCCCC--e
Confidence 458899999999999999621 1 1 343 3446888888899999999874 4
Q ss_pred EEeeecCCC
Q 030735 147 CLAFNNQKQ 155 (172)
Q Consensus 147 liGfDn~rq 155 (172)
|. +|.+..
T Consensus 190 l~-vDaN~~ 197 (365)
T 3ik4_A 190 LI-VDGNCG 197 (365)
T ss_dssp EE-EECTTC
T ss_pred EE-EECCCC
Confidence 43 787643
No 88
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=21.31 E-value=45 Score=23.92 Aligned_cols=59 Identities=12% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCC-CCHHHHHHHHHHHHHHCCCCe
Q 030735 66 PSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGC-NDSSQILNEIQECKKAYPNAY 144 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~-td~sqVl~Eie~C~k~~P~~Y 144 (172)
.+||++||.+.+..| .||... +.+...| + |+.+=|.. -+--.-++++.+...-||+-.
T Consensus 1 ~~Ls~~ei~~~L~~l--~gW~~~----~~~~i~r-----------~----f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~ 59 (101)
T 2ebb_A 1 MRLTEEEVQALLEKA--DGWKLA----DERWIVK-----------K----YRFQDYLQGIEFVRRIAAISENANHHPFIS 59 (101)
T ss_dssp CCCCHHHHHHHHHTS--TTCEEE----TTTEEEE-----------E----EECSSHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCHHHHHHHhhcC--CCCeEC----CCCCEEE-----------E----EEeCCHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 369999998887766 699862 2222333 1 23332221 123334566666667788754
Q ss_pred E
Q 030735 145 I 145 (172)
Q Consensus 145 I 145 (172)
+
T Consensus 60 ~ 60 (101)
T 2ebb_A 60 I 60 (101)
T ss_dssp E
T ss_pred E
Confidence 3
No 89
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=21.28 E-value=1.7e+02 Score=20.36 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=46.3
Q ss_pred ccccCCCCCChHHHHHHHHHHHhCCCeeEEEeccCCceeecCCCCCCccCCcceeeccCCCCCCCCHHHHHHHHHHHHHH
Q 030735 60 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKA 139 (172)
Q Consensus 60 eT~SyLP~ltd~qi~kQV~ylL~qGw~p~lEfad~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~td~sqVl~Eie~C~k~ 139 (172)
+.|.-+..++.+++.+.++-|+.+|=+.++.=.+..+ |....+|.-| ..+++..|++-+++
T Consensus 21 ~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~l---------~~~l~~~L~~yH~~ 81 (135)
T 2v9v_A 21 QEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLY----------AISTERYQAW---------WQAVTRALEEFHSR 81 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEE----------EEEHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCcEEEEecCCCeE----------EecHHHHHHH---------HHHHHHHHHHHHHh
Confidence 4455666788999999999999999777664211110 2335666644 45888999999999
Q ss_pred CCCC
Q 030735 140 YPNA 143 (172)
Q Consensus 140 ~P~~ 143 (172)
||+.
T Consensus 82 ~P~~ 85 (135)
T 2v9v_A 82 YPLR 85 (135)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 9975
No 90
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=21.11 E-value=59 Score=24.83 Aligned_cols=84 Identities=17% Similarity=0.362 Sum_probs=46.5
Q ss_pred ccCCcccccc-ccCCCCCChHHHHHHH---HHHH-hC-CC-eeEEEecc-CCceeecCCCCCCccCCcceeeccCCCCCC
Q 030735 52 NPINNKKFEA-LSYLPSLSDDSIAKEI---DYML-KK-GW-IPCLEFDE-VGYVHRENSKMPGYYDGRYWTMWKLPMFGC 123 (172)
Q Consensus 52 ~p~~~kkfeT-~SyLP~ltd~qi~kQV---~ylL-~q-Gw-~p~lEfad-~~~~~R~~~~sp~yyd~ryWtmWkLPmfg~ 123 (172)
.|.+.++||+ |-.=|+|+++|+..-| .-+| ++ |= +..+|.=. .+.+|.=++ +-+|.|+-| -|.+
T Consensus 14 ~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K----~~~G~Yvl~----~f~a 85 (140)
T 1vmb_A 14 AYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKK----FNEGDYTVI----YFRC 85 (140)
T ss_dssp ---CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETT----EEEEEEEEE----EEEE
T ss_pred cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCC----CCEEEEEEE----EEEE
Confidence 4667799999 5556779999886544 4444 45 43 43454332 223332122 234667543 2444
Q ss_pred CCHHHHHHHHHHHHHHCCCCeEE
Q 030735 124 NDSSQILNEIQECKKAYPNAYIR 146 (172)
Q Consensus 124 td~sqVl~Eie~C~k~~P~~YIR 146 (172)
+.++++||+.-.+-.++ -||
T Consensus 86 --~~~~i~ELer~lri~e~-VLR 105 (140)
T 1vmb_A 86 --DGQNLQELENFYRVTPE-IIR 105 (140)
T ss_dssp --CSSSTHHHHHHHHTCTT-EEE
T ss_pred --CHHHHHHHHHHhcCCcc-eeE
Confidence 34678999987766543 344
No 91
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=21.09 E-value=79 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHhCCCe
Q 030735 69 SDDSIAKEIDYMLKKGWI 86 (172)
Q Consensus 69 td~qi~kQV~ylL~qGw~ 86 (172)
+..+|.+.|+.||.++|.
T Consensus 46 ~~~~IKk~IE~LIereYl 63 (77)
T 3tdu_C 46 RVPVIKKCIDILIEKEYL 63 (77)
T ss_dssp CHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHhhhHh
Confidence 888999999999999984
No 92
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=20.64 E-value=60 Score=25.54 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCCCCChHHHHHHHHHHHhCC
Q 030735 64 YLPSLSDDSIAKEIDYMLKKG 84 (172)
Q Consensus 64 yLP~ltd~qi~kQV~ylL~qG 84 (172)
-+||||+||..+ |+++++..
T Consensus 3 ~~~~l~~~~~~~-v~~~l~~~ 22 (221)
T 1euv_A 3 LVPELNEKDDDQ-VQKALASR 22 (221)
T ss_dssp SSCCCCHHHHHH-HHHHHTCS
T ss_pred cCCCCCHHHHHH-HHHHhcCC
Confidence 479999999887 88888863
No 93
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=20.62 E-value=60 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 030735 67 SLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 67 ~ltd~qi~kQV~ylL~q 83 (172)
.|||+||..=+.||.+.
T Consensus 80 ~Ls~~ei~~l~~yl~~~ 96 (110)
T 2l4d_A 80 RLGDAEVSALISYLEEE 96 (110)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 38999999999999875
No 94
>3ea1_A 1-phosphatidylinositol phosphodiesterase; phosphatidylinositol-specific phospholipase C, PI-PLC, dimer, interfacially impaired; 1.75A {Bacillus thuringiensis} SCOP: c.1.18.2 PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A* 1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Probab=20.45 E-value=63 Score=27.58 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Q 030735 124 NDSSQILNEIQECKKAYPNAYIRCL 148 (172)
Q Consensus 124 td~sqVl~Eie~C~k~~P~~YIRli 148 (172)
....+||.||.+.+.+||++.|=|.
T Consensus 89 ~~l~dvL~ei~~FL~~hP~EvVil~ 113 (298)
T 3ea1_A 89 VTLHEFINEAKQFLKDNPSETIIMS 113 (298)
T ss_dssp EEHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3578999999999999999998554
No 95
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=20.42 E-value=1.6e+02 Score=24.89 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCC-eEEEEeeec-CCCeEEEEEEEecCCC
Q 030735 130 LNEIQECKKAYPNA-YIRCLAFNN-QKQGQCMSFLIQKPTT 168 (172)
Q Consensus 130 l~Eie~C~k~~P~~-YIRliGfDn-~rqvq~~sfIV~RP~~ 168 (172)
..|||+++.+||+- -+-++|... ....+++.||+-++..
T Consensus 414 p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~ 454 (504)
T 1t5h_X 414 PSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE 454 (504)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC
T ss_pred HHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc
Confidence 57999999999973 345677644 4556788999988753
No 96
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=20.42 E-value=68 Score=21.20 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHhC
Q 030735 66 PSLSDDSIAKEIDYMLKK 83 (172)
Q Consensus 66 P~ltd~qi~kQV~ylL~q 83 (172)
..|||+||..=+.||.+.
T Consensus 85 ~~ls~~ei~~l~~yl~~l 102 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSSL 102 (103)
T ss_dssp TTCCHHHHHHHHHHHHHC
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 469999999999999764
No 97
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=20.29 E-value=1.6e+02 Score=25.51 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=20.1
Q ss_pred CCChHHHHH--------HHHHHHhCCCeeEEEeccCC
Q 030735 67 SLSDDSIAK--------EIDYMLKKGWIPCLEFDEVG 95 (172)
Q Consensus 67 ~ltd~qi~k--------QV~ylL~qGw~p~lEfad~~ 95 (172)
.+++++..+ =+.+.-+.|-+.|||..|.+
T Consensus 188 ~~~~e~~w~~l~~~L~~i~~~Aee~GV~Laiep~dpp 224 (386)
T 3bdk_A 188 NISEEDLWANLEYFIKAILPTAEEAGVKMAIHPDDPP 224 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHSSSCEEEECCCSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCcc
Confidence 678777433 34455456999999988765
No 98
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=20.17 E-value=21 Score=21.28 Aligned_cols=11 Identities=9% Similarity=0.625 Sum_probs=7.8
Q ss_pred HHHHHHHHHhC
Q 030735 73 IAKEIDYMLKK 83 (172)
Q Consensus 73 i~kQV~ylL~q 83 (172)
+..||+.||++
T Consensus 5 v~~QV~~LI~~ 15 (33)
T 1w1n_A 5 VPEQVDKLIQQ 15 (33)
T ss_dssp STHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34788888875
Done!