BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030736
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana
GN=At1g22800 PE=2 SV=2
Length = 355
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 124/163 (76%), Gaps = 8/163 (4%)
Query: 13 LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
LL+R ++ + + + S SF T+ + E N SS+V IFDR LKR RDRAAWL
Sbjct: 13 LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWL 71
Query: 67 TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
+R NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72 SRQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131
Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168
DM+K C+DAQ D+ +++IET + VGDEEFLP+KE D ++ +
Sbjct: 132 DMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKESSVDLIISS 174
>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1
Length = 345
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 39 ETTSNGSSR-------VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCR 89
E TS S R ++IFDR LKRKQ++ AA P D + V + DR+ D
Sbjct: 28 EVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIP 87
Query: 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCF 147
+ FP AL LG GRG I + + +T + + ++A +++ I T
Sbjct: 88 RNFPLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVS 137
Query: 148 VVGDEEFLPLKERFGDQLLGA 168
V+ DEEFLP KE D ++ +
Sbjct: 138 VLADEEFLPFKENTFDLVVSS 158
>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1
Length = 345
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 42 SNGSSRVSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLG 99
S ++IFDR LKRKQ++ AA P D + V + DR+ D + FP AL LG
Sbjct: 38 STSPRTLNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLG 97
Query: 100 GSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPL 157
GRG I + + +T + + ++A +++ I T V+ DEEFLP
Sbjct: 98 C----------GRGYIAQYLNKETIGKFFQADIAENALKNSLETEIPTVSVLADEEFLPF 147
Query: 158 KERFGDQLLGA 168
+E D ++ +
Sbjct: 148 RENTFDLVVSS 158
>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
+G + + S R ++IFDR LKRKQ++ AA P D + V + DR+ D + F
Sbjct: 31 SGVPPSGSTSPRALNIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDF 90
Query: 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVG 150
P AL +G GRG I + + +T + + + + A +++ +I T ++
Sbjct: 91 PLALDIGC----------GRGYIAQHLDKETVGKIFQTDIAEHALKNSLETDIPTVNILA 140
Query: 151 DEEFLPLKERFGDQLLGA 168
DEEFLP +E D ++ +
Sbjct: 141 DEEFLPFQENTFDLVVSS 158
>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 48 VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
++IFDR LKRKQ++ AA P D + + + DR+ D + FP AL +G
Sbjct: 44 LNIFDRELKRKQKNWAARQPEPMKFDYLKEEIGSRIADRVYDIARDFPLALDIGC----- 98
Query: 106 RRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
GRG I + + +T + + + + A +++ +I T ++ DEEFLP E
Sbjct: 99 -----GRGYIAQHLNKETVGKIFQTDIAEHALKNSIETDIPTVNILADEEFLPFPE 149
>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1
Length = 321
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 48 VSIFDRHLKRKQRDRAAWL--TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
+++FDR +KR+Q+D A+ L + D + V + DR+ D +TFP AL +G +
Sbjct: 24 MNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGCGRSHI 83
Query: 106 RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQL 165
L + +E+L + D S L+ + +I V+ DEEFLP KE D +
Sbjct: 84 AEHL-SKEVVERLFLTDISSSSLR-------NRKTSDIPAQCVMADEEFLPFKENTFDLV 135
Query: 166 LGA 168
L +
Sbjct: 136 LSS 138
>sp|A6L2V8|HIS8_BACV8 Histidinol-phosphate aminotransferase OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=hisC PE=3
SV=1
Length = 346
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLG-GSLEAVRRLLRG--RGGIEKLIMMDTSY 125
PN+ + D + L + + +K P + LG GS EA+ + R G++ ++ +D +Y
Sbjct: 44 PNNRYPDPMQRELKNMIAPIKKVDPDTIFLGNGSDEAIDLVYRAFCIPGVDNVVAIDPTY 103
Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASLD 171
M ++C D +++E V+ DE + + D+LL A+ D
Sbjct: 104 GMYQVCADV------NDVEYRKVLLDENY----QFSADKLLAATDD 139
>sp|D1ZA70|ARO1_SORMK Pentafunctional AROM polypeptide OS=Sordaria macrospora (strain
ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
GN=SMAC_02366 PE=3 SV=1
Length = 1563
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 51 FDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTA---LCLGGSLE--AV 105
D L+R++ + R + + + LD LED K PT C GG +E A
Sbjct: 888 LDHELERREGQTIPEIIRSERGW-EGFRKAELDLLEDVIKNNPTGHIFSCGGGIVESEAA 946
Query: 106 RRLL---RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF 147
R+LL GGI L+ DT + L +D + A+++NI +
Sbjct: 947 RKLLISYSQNGGIVLLVHRDTDQVVEYLMRDKTRPAYSENIREVY 991
>sp|Q64RE8|HIS8_BACFR Histidinol-phosphate aminotransferase OS=Bacteroides fragilis
(strain YCH46) GN=hisC PE=3 SV=1
Length = 345
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLG-GSLEAVRRLLRG--RGGIEKLIMMDTSY 125
P++ + D + +L L +K P + LG GS EA+ + R G + ++ +D +Y
Sbjct: 44 PHNRYPDPMQRDLKLELSKIKKVAPAHIFLGNGSDEAIDLVFRAFCEPGRDNVVAIDPTY 103
Query: 126 DMLKLCKDA 134
M ++C D
Sbjct: 104 GMYQVCADV 112
>sp|Q5LAZ9|HIS8_BACFN Histidinol-phosphate aminotransferase OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=hisC PE=3 SV=1
Length = 345
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLG-GSLEAVRRLLRG--RGGIEKLIMMDTSY 125
P++ + D + +L L +K P + LG GS EA+ + R G + ++ +D +Y
Sbjct: 44 PHNRYPDPMQRDLKLELSKIKKVAPAHIFLGNGSDEAIDLVFRAFCEPGRDNVVAIDPTY 103
Query: 126 DMLKLCKDA 134
M ++C D
Sbjct: 104 GMYQVCADV 112
>sp|P46209|USF_AQUPY Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
Length = 231
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 74 VDAVAENLLDRLEDCRKTFP-----TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128
VDA+ + +D L++CR T P T C GG+L + G LI D S
Sbjct: 90 VDAIFKASVDFLKECRYTSPKKVGVTGFCCGGTLS-----MYFAGKFPDLI--DASVPFY 142
Query: 129 KLCKDAQQDAHNDNIETCFVVGD-EEFL 155
L + + DA N + F++ + +EF+
Sbjct: 143 GLPQITKIDAENIKVPIFFILAEKDEFV 170
>sp|Q8X071|ARO1_NEUCR Pentafunctional AROM polypeptide OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aro-1 PE=3 SV=1
Length = 1563
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 51 FDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTA---LCLGG--SLEAV 105
D L+R++ + R + + + L+ LED K PT C GG EA
Sbjct: 888 LDHELERREGQTIPEIIRSERGW-EGFRKAELELLEDVIKNNPTGHIFSCGGGIVETEAA 946
Query: 106 RRLLRG---RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF 147
R++L GGI L+ DT + L +D + A+++NI +
Sbjct: 947 RKMLLSYSQNGGIVLLVHRDTDQVVEYLMRDKSRPAYSENIREVY 991
>sp|P03459|HEMA_I34A0 Hemagglutinin OS=Influenza A virus (strain A/Fowl plague
virus/Rostock/8/1934 H7N1) GN=HA PE=1 SV=1
Length = 563
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIM 120
D F++ A+ +++R E +P + EA+R++LRG GGI+K M
Sbjct: 85 DQFLEFSADLIIERREGNDVCYPGKFV---NEEALRQILRGSGGIDKETM 131
>sp|A8YV13|UVRC_LACH4 UvrABC system protein C OS=Lactobacillus helveticus (strain DPC
4571) GN=uvrC PE=3 SV=1
Length = 600
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLL 166
RLLR + LI+MD + C+D ++ N NI +V D++ FGD +
Sbjct: 445 RLLREHKKMPDLILMDGGQIQVDACEDVLRNELNLNIPVAGMVKDDKHRTNHLLFGDPIN 504
Query: 167 GASL 170
G L
Sbjct: 505 GVPL 508
>sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3
Length = 2214
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 34 TDNGFETTSNGSSRVSIFDRHL-KRKQRDRAAWLTRPNDSFVDAVAENLLDRLE 86
++N F T +NGSS +S DR L +RKQ A P D ++ + + + E
Sbjct: 565 SENQFFTRTNGSSLLSSSDRELWQRKQEGTATLYDSPKDQHLNGGVQGIQGQTE 618
>sp|Q5FKH6|UVRC_LACAC UvrABC system protein C OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=uvrC PE=3 SV=1
Length = 600
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLL 166
RLLR + LI+MD + C+D ++ N NI +V D++ FGD +
Sbjct: 445 RLLREHKKMPDLILMDGGQIQVDACEDVLRNELNLNIPVAGMVKDDKHRTNHLLFGDPIN 504
Query: 167 GASL 170
G L
Sbjct: 505 GIPL 508
>sp|Q1QYX8|GCP_CHRSD Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=gcp PE=3 SV=1
Length = 343
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 14 LRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDR 53
L R A + A P G FCTDNG G+ R+ +R
Sbjct: 283 LDRETAKRQAQAFYPRGRFCTDNGAMIAYVGAQRLLAGER 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,898,452
Number of Sequences: 539616
Number of extensions: 2391531
Number of successful extensions: 5878
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5862
Number of HSP's gapped (non-prelim): 20
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)