Query 030736
Match_columns 172
No_of_seqs 208 out of 1624
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2940 Predicted methyltransf 99.9 4.4E-27 9.6E-32 189.9 6.4 139 17-170 7-146 (325)
2 COG2226 UbiE Methylase involve 99.8 5.3E-19 1.1E-23 144.5 9.7 117 45-170 11-128 (238)
3 PF01209 Ubie_methyltran: ubiE 99.7 6.5E-18 1.4E-22 137.8 9.2 118 44-169 6-124 (233)
4 PRK10258 biotin biosynthesis p 99.7 2.2E-17 4.8E-22 134.7 12.2 110 50-170 3-112 (251)
5 PRK05785 hypothetical protein; 99.7 5.2E-16 1.1E-20 125.8 10.7 110 46-170 10-119 (226)
6 PLN02233 ubiquinone biosynthes 99.6 5.7E-15 1.2E-19 122.1 12.0 80 91-170 73-154 (261)
7 PRK11088 rrmA 23S rRNA methylt 99.5 1.1E-13 2.4E-18 114.6 13.7 113 46-170 45-160 (272)
8 TIGR02072 BioC biotin biosynth 99.5 4.7E-14 1E-18 112.5 10.3 103 62-170 4-107 (240)
9 PF08241 Methyltransf_11: Meth 99.5 7.8E-14 1.7E-18 95.7 8.9 69 96-170 1-69 (95)
10 TIGR02752 MenG_heptapren 2-hep 99.5 2.1E-13 4.6E-18 109.5 11.7 114 47-169 7-122 (231)
11 PF13847 Methyltransf_31: Meth 99.4 8.1E-13 1.8E-17 100.1 10.2 75 91-169 3-81 (152)
12 PF13649 Methyltransf_25: Meth 99.4 2.2E-13 4.7E-18 96.5 6.2 72 95-169 1-75 (101)
13 TIGR03587 Pse_Me-ase pseudamin 99.4 1.6E-12 3.4E-17 104.0 11.2 72 91-170 43-114 (204)
14 PRK14103 trans-aconitate 2-met 99.4 3.7E-13 8E-18 110.3 7.6 83 76-170 16-98 (255)
15 KOG1541 Predicted protein carb 99.4 4.2E-13 9.2E-18 108.2 7.3 92 70-170 29-121 (270)
16 PF12847 Methyltransf_18: Meth 99.4 2.1E-12 4.6E-17 92.1 8.5 76 92-169 2-78 (112)
17 KOG1540 Ubiquinone biosynthesi 99.4 4.1E-12 8.9E-17 104.4 10.9 78 91-169 100-185 (296)
18 PLN02244 tocopherol O-methyltr 99.4 5.6E-12 1.2E-16 107.9 12.3 79 90-170 117-195 (340)
19 PRK11036 putative S-adenosyl-L 99.4 6E-12 1.3E-16 103.2 11.4 112 49-169 4-120 (255)
20 PRK01683 trans-aconitate 2-met 99.3 3.9E-12 8.5E-17 104.0 8.7 88 73-170 15-102 (258)
21 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.9E-11 4.1E-16 100.0 12.4 96 68-170 37-134 (247)
22 PRK06202 hypothetical protein; 99.3 1.6E-11 3.5E-16 99.2 11.7 76 90-170 59-138 (232)
23 PLN02396 hexaprenyldihydroxybe 99.3 3.8E-11 8.2E-16 102.3 14.3 75 92-169 132-206 (322)
24 PRK00107 gidB 16S rRNA methylt 99.3 2.4E-11 5.3E-16 96.1 11.6 75 91-169 45-120 (187)
25 PRK11207 tellurite resistance 99.3 1.9E-11 4E-16 97.0 9.4 73 92-170 31-104 (197)
26 PRK00121 trmB tRNA (guanine-N( 99.3 1.2E-11 2.6E-16 98.5 7.6 79 90-171 39-121 (202)
27 TIGR02021 BchM-ChlM magnesium 99.3 5.4E-11 1.2E-15 95.3 10.9 71 91-169 55-127 (219)
28 TIGR00138 gidB 16S rRNA methyl 99.3 1.1E-10 2.4E-15 91.7 11.9 74 92-169 43-117 (181)
29 PLN02490 MPBQ/MSBQ methyltrans 99.2 3.3E-11 7.2E-16 103.4 9.6 75 90-169 112-186 (340)
30 TIGR00740 methyltransferase, p 99.2 8.8E-11 1.9E-15 95.3 11.6 78 90-170 52-131 (239)
31 TIGR00477 tehB tellurite resis 99.2 3.2E-11 6.9E-16 95.5 8.6 72 92-169 31-102 (195)
32 PTZ00098 phosphoethanolamine N 99.2 5.3E-11 1.2E-15 98.5 10.2 74 90-168 51-124 (263)
33 COG2227 UbiG 2-polyprenyl-3-me 99.2 7.4E-12 1.6E-16 102.1 4.9 73 91-168 59-131 (243)
34 COG4106 Tam Trans-aconitate me 99.2 6.6E-12 1.4E-16 101.1 4.2 82 78-169 19-100 (257)
35 smart00650 rADc Ribosomal RNA 99.2 1E-10 2.2E-15 90.4 9.5 73 91-169 13-85 (169)
36 PRK11873 arsM arsenite S-adeno 99.2 8.1E-11 1.8E-15 97.1 9.4 78 90-170 76-155 (272)
37 PLN02585 magnesium protoporphy 99.2 1.9E-10 4.1E-15 97.8 11.3 74 91-169 144-220 (315)
38 PLN02336 phosphoethanolamine N 99.2 1.4E-10 3E-15 102.8 10.6 85 79-169 256-340 (475)
39 TIGR02469 CbiT precorrin-6Y C5 99.2 5E-10 1.1E-14 80.6 11.1 90 76-170 6-97 (124)
40 PRK15068 tRNA mo(5)U34 methylt 99.2 1.5E-10 3.3E-15 98.6 9.6 75 92-169 123-197 (322)
41 PRK06922 hypothetical protein; 99.2 1E-10 2.2E-15 107.2 8.9 76 91-169 418-495 (677)
42 PRK08317 hypothetical protein; 99.2 3.8E-10 8.2E-15 89.7 11.3 76 91-169 19-95 (241)
43 PF05175 MTS: Methyltransferas 99.2 6.1E-10 1.3E-14 86.3 12.0 74 91-168 31-105 (170)
44 PRK07580 Mg-protoporphyrin IX 99.2 3.7E-10 8E-15 90.3 11.1 71 91-169 63-135 (230)
45 PRK12335 tellurite resistance 99.2 1.5E-10 3.1E-15 96.8 9.0 73 92-170 121-193 (287)
46 PRK00216 ubiE ubiquinone/menaq 99.2 6.3E-10 1.4E-14 88.8 12.3 78 91-169 51-129 (239)
47 COG4976 Predicted methyltransf 99.2 3.1E-12 6.7E-17 103.9 -1.3 107 46-168 86-195 (287)
48 PRK13942 protein-L-isoaspartat 99.1 5.5E-10 1.2E-14 89.6 11.4 78 90-170 75-154 (212)
49 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 6E-10 1.3E-14 88.1 11.3 75 91-169 39-114 (223)
50 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.2E-10 2.7E-15 92.0 6.9 78 91-171 16-97 (194)
51 PRK13944 protein-L-isoaspartat 99.1 7.5E-10 1.6E-14 88.3 11.3 78 90-170 71-151 (205)
52 TIGR02081 metW methionine bios 99.1 2.8E-10 6.2E-15 89.6 8.6 69 91-169 13-83 (194)
53 PRK14966 unknown domain/N5-glu 99.1 4.2E-10 9.2E-15 98.7 10.3 75 92-169 252-327 (423)
54 PRK00274 ksgA 16S ribosomal RN 99.1 2E-10 4.4E-15 95.4 7.8 94 67-169 20-113 (272)
55 TIGR00537 hemK_rel_arch HemK-r 99.1 3.7E-10 8E-15 87.8 8.7 71 92-169 20-90 (179)
56 PF13489 Methyltransf_23: Meth 99.1 2.8E-10 6.1E-15 85.4 7.6 68 89-170 20-87 (161)
57 PF08242 Methyltransf_12: Meth 99.1 1.9E-11 4.2E-16 85.9 0.9 73 96-170 1-75 (99)
58 TIGR00080 pimt protein-L-isoas 99.1 1.3E-09 2.9E-14 87.2 11.2 87 78-169 66-154 (215)
59 PRK08287 cobalt-precorrin-6Y C 99.1 1.5E-09 3.3E-14 84.9 11.2 95 69-170 11-106 (187)
60 KOG1270 Methyltransferases [Co 99.1 2E-10 4.4E-15 94.7 6.3 70 93-169 91-166 (282)
61 PRK14896 ksgA 16S ribosomal RN 99.1 7.3E-10 1.6E-14 91.4 9.0 86 74-169 14-99 (258)
62 TIGR03534 RF_mod_PrmC protein- 99.1 1.5E-09 3.3E-14 87.7 10.4 74 91-168 87-161 (251)
63 smart00138 MeTrc Methyltransfe 99.0 1.2E-09 2.5E-14 90.7 9.6 78 92-169 100-211 (264)
64 TIGR00452 methyltransferase, p 99.0 1.6E-09 3.5E-14 92.1 10.1 77 91-170 121-197 (314)
65 PLN02336 phosphoethanolamine N 99.0 8.8E-10 1.9E-14 97.7 8.7 73 91-169 37-111 (475)
66 TIGR00536 hemK_fam HemK family 99.0 2E-09 4.4E-14 89.9 10.4 72 93-168 116-189 (284)
67 TIGR03533 L3_gln_methyl protei 99.0 2.4E-09 5.2E-14 89.6 10.6 74 91-168 121-196 (284)
68 PF03848 TehB: Tellurite resis 99.0 1.8E-09 4E-14 85.9 8.9 72 92-169 31-102 (192)
69 PRK15001 SAM-dependent 23S rib 99.0 1.9E-09 4.1E-14 93.8 9.2 75 93-168 230-305 (378)
70 PRK11805 N5-glutamine S-adenos 99.0 3E-09 6.6E-14 90.1 10.1 72 93-168 135-208 (307)
71 smart00828 PKS_MT Methyltransf 99.0 2.4E-09 5.2E-14 85.6 9.0 74 94-169 2-75 (224)
72 KOG4300 Predicted methyltransf 99.0 1.7E-09 3.6E-14 86.9 7.9 74 93-169 78-153 (252)
73 TIGR00406 prmA ribosomal prote 99.0 4.2E-09 9.2E-14 88.2 10.0 75 90-170 158-234 (288)
74 PRK14967 putative methyltransf 99.0 2.3E-09 5E-14 86.3 8.2 73 91-168 36-108 (223)
75 PF05401 NodS: Nodulation prot 99.0 7E-09 1.5E-13 82.6 10.6 73 89-168 41-113 (201)
76 TIGR00755 ksgA dimethyladenosi 99.0 2.8E-09 6.2E-14 87.5 8.5 94 67-170 7-103 (253)
77 PF13659 Methyltransf_26: Meth 99.0 1.4E-09 3.1E-14 78.0 5.7 75 93-169 2-78 (117)
78 PRK04266 fibrillarin; Provisio 98.9 7.5E-09 1.6E-13 84.2 10.5 77 90-171 71-151 (226)
79 PHA03411 putative methyltransf 98.9 5.5E-09 1.2E-13 87.3 9.6 69 92-168 65-133 (279)
80 PRK09489 rsmC 16S ribosomal RN 98.9 3.7E-09 8E-14 90.8 8.9 73 92-169 197-269 (342)
81 PRK14121 tRNA (guanine-N(7)-)- 98.9 3E-09 6.4E-14 92.7 8.3 78 91-171 122-202 (390)
82 PF07021 MetW: Methionine bios 98.9 3E-09 6.5E-14 84.4 7.5 71 89-169 11-83 (193)
83 TIGR03438 probable methyltrans 98.9 7.3E-09 1.6E-13 87.3 10.3 69 91-160 63-133 (301)
84 PRK00312 pcm protein-L-isoaspa 98.9 1.3E-08 2.7E-13 81.2 10.9 88 75-169 64-152 (212)
85 PRK03522 rumB 23S rRNA methylu 98.9 4.5E-09 9.7E-14 89.1 8.7 72 92-168 174-247 (315)
86 PRK13168 rumA 23S rRNA m(5)U19 98.9 6.1E-09 1.3E-13 92.0 9.9 73 91-168 297-374 (443)
87 PRK09328 N5-glutamine S-adenos 98.9 1.2E-08 2.6E-13 83.9 10.7 75 91-168 108-182 (275)
88 PRK11705 cyclopropane fatty ac 98.9 1E-08 2.2E-13 89.3 10.7 71 90-169 166-236 (383)
89 PHA03412 putative methyltransf 98.9 7.7E-09 1.7E-13 84.7 9.1 69 92-168 50-121 (241)
90 PRK11188 rrmJ 23S rRNA methylt 98.9 2.1E-09 4.5E-14 86.3 5.6 68 90-170 50-126 (209)
91 COG2890 HemK Methylase of poly 98.9 8.6E-09 1.9E-13 86.3 9.4 70 94-168 113-183 (280)
92 TIGR01177 conserved hypothetic 98.9 8.9E-09 1.9E-13 87.7 9.4 90 72-168 165-255 (329)
93 PRK10901 16S rRNA methyltransf 98.9 8.1E-09 1.7E-13 90.9 8.9 92 71-167 226-319 (427)
94 PRK14968 putative methyltransf 98.9 2.3E-08 4.9E-13 77.3 10.4 75 91-168 23-97 (188)
95 COG4123 Predicted O-methyltran 98.9 6.8E-09 1.5E-13 85.5 7.6 76 92-168 45-122 (248)
96 PRK01544 bifunctional N5-gluta 98.9 1.7E-08 3.8E-13 90.8 10.3 73 92-168 139-213 (506)
97 PTZ00338 dimethyladenosine tra 98.8 1.1E-08 2.3E-13 86.4 8.3 95 68-169 15-109 (294)
98 PF06325 PrmA: Ribosomal prote 98.8 1.7E-08 3.6E-13 85.3 9.2 80 85-170 155-234 (295)
99 PRK00377 cbiT cobalt-precorrin 98.8 3.2E-08 6.8E-13 78.3 10.2 93 72-169 23-119 (198)
100 KOG1271 Methyltransferases [Ge 98.8 9.4E-09 2E-13 81.2 7.0 87 77-166 47-141 (227)
101 PRK00517 prmA ribosomal protei 98.8 3.3E-08 7.2E-13 81.1 10.5 72 89-170 117-188 (250)
102 KOG3010 Methyltransferase [Gen 98.8 5.2E-09 1.1E-13 85.5 5.6 71 93-168 35-107 (261)
103 PRK13943 protein-L-isoaspartat 98.8 2.1E-08 4.6E-13 85.6 9.2 76 91-169 80-157 (322)
104 COG2813 RsmC 16S RNA G1207 met 98.8 2.2E-08 4.9E-13 84.3 8.7 72 92-168 159-231 (300)
105 TIGR01983 UbiG ubiquinone bios 98.8 5.1E-08 1.1E-12 77.7 10.2 72 92-168 46-119 (224)
106 TIGR03704 PrmC_rel_meth putati 98.8 3.2E-08 7E-13 81.5 9.2 71 93-168 88-160 (251)
107 TIGR03840 TMPT_Se_Te thiopurin 98.8 3.7E-08 8E-13 79.4 8.8 76 91-168 34-120 (213)
108 COG2264 PrmA Ribosomal protein 98.8 2.4E-08 5.3E-13 84.2 8.0 77 87-169 158-237 (300)
109 PTZ00146 fibrillarin; Provisio 98.8 3.6E-08 7.8E-13 83.0 8.8 100 67-170 107-211 (293)
110 PRK07402 precorrin-6B methylas 98.8 8.4E-08 1.8E-12 75.6 10.2 91 72-167 23-115 (196)
111 PRK00811 spermidine synthase; 98.8 3.5E-08 7.5E-13 82.6 8.2 81 91-171 76-160 (283)
112 cd02440 AdoMet_MTases S-adenos 98.7 9.9E-08 2.1E-12 64.5 8.3 74 94-170 1-75 (107)
113 COG2230 Cfa Cyclopropane fatty 98.7 1E-07 2.3E-12 79.8 10.0 72 90-168 71-144 (283)
114 COG2263 Predicted RNA methylas 98.7 1.4E-07 3.1E-12 74.7 10.2 70 92-168 46-115 (198)
115 PF02353 CMAS: Mycolic acid cy 98.7 7.1E-08 1.5E-12 80.5 9.0 82 79-169 52-135 (273)
116 PF01135 PCMT: Protein-L-isoas 98.7 7.5E-08 1.6E-12 77.5 8.5 89 77-170 60-150 (209)
117 TIGR00563 rsmB ribosomal RNA s 98.7 6.3E-08 1.4E-12 85.3 8.5 90 73-167 222-315 (426)
118 TIGR00438 rrmJ cell division p 98.7 4.5E-08 9.8E-13 76.7 6.8 67 90-169 31-106 (188)
119 PRK05134 bifunctional 3-demeth 98.7 8E-08 1.7E-12 77.3 7.9 73 91-168 48-121 (233)
120 PRK14901 16S rRNA methyltransf 98.6 9E-08 1.9E-12 84.5 8.1 75 90-167 251-331 (434)
121 TIGR00479 rumA 23S rRNA (uraci 98.6 1.4E-07 3E-12 83.0 9.1 73 91-168 292-369 (431)
122 PLN02672 methionine S-methyltr 98.6 1.6E-07 3.4E-12 90.7 9.9 75 93-168 120-210 (1082)
123 PRK14903 16S rRNA methyltransf 98.6 9.2E-08 2E-12 84.5 7.7 91 72-167 220-313 (431)
124 PRK10909 rsmD 16S rRNA m(2)G96 98.6 2.2E-07 4.7E-12 74.3 9.2 93 71-168 34-128 (199)
125 PRK13255 thiopurine S-methyltr 98.6 1.9E-07 4E-12 75.6 8.7 75 91-167 37-122 (218)
126 PLN03075 nicotianamine synthas 98.6 4.4E-07 9.6E-12 76.6 11.1 77 91-169 123-203 (296)
127 PRK14902 16S rRNA methyltransf 98.6 1.4E-07 3.1E-12 83.3 8.4 74 91-168 250-327 (444)
128 PRK04457 spermidine synthase; 98.6 1.4E-07 2.9E-12 78.3 7.6 79 91-170 66-145 (262)
129 PRK04148 hypothetical protein; 98.6 4.5E-07 9.8E-12 68.3 9.2 80 76-168 3-84 (134)
130 PRK01581 speE spermidine synth 98.6 2.2E-07 4.9E-12 80.4 8.6 81 91-171 150-236 (374)
131 PRK03612 spermidine synthase; 98.6 1.6E-07 3.4E-12 84.9 7.9 82 90-171 296-383 (521)
132 PRK14904 16S rRNA methyltransf 98.6 2.4E-07 5.3E-12 82.0 8.9 73 91-167 250-324 (445)
133 TIGR02085 meth_trns_rumB 23S r 98.6 2.8E-07 6.1E-12 80.0 8.7 72 92-168 234-307 (374)
134 PRK11727 23S rRNA mA1618 methy 98.6 2.8E-07 6.1E-12 78.6 8.4 76 91-168 114-196 (321)
135 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1.9E-07 4E-12 77.4 7.1 75 90-167 70-146 (264)
136 TIGR02716 C20_methyl_CrtF C-20 98.6 4.4E-07 9.6E-12 76.3 9.3 73 91-169 149-223 (306)
137 PF08003 Methyltransf_9: Prote 98.5 4.9E-07 1.1E-11 76.4 8.5 86 79-169 105-190 (315)
138 COG2242 CobL Precorrin-6B meth 98.5 1.4E-06 3E-11 68.9 10.2 93 72-170 17-111 (187)
139 COG2518 Pcm Protein-L-isoaspar 98.5 1.5E-06 3.2E-11 70.0 10.1 86 77-169 60-146 (209)
140 PLN02366 spermidine synthase 98.5 9.9E-07 2.1E-11 74.9 9.4 82 90-171 90-175 (308)
141 TIGR00478 tly hemolysin TlyA f 98.5 1.3E-06 2.8E-11 71.3 9.5 39 91-130 75-113 (228)
142 TIGR00417 speE spermidine synt 98.4 1.7E-06 3.7E-11 71.8 9.7 81 91-171 72-155 (270)
143 PRK15128 23S rRNA m(5)C1962 me 98.4 1.3E-06 2.8E-11 76.5 8.5 73 92-168 221-300 (396)
144 KOG2904 Predicted methyltransf 98.4 3.1E-06 6.7E-11 70.7 10.0 94 74-168 130-229 (328)
145 COG0030 KsgA Dimethyladenosine 98.4 2.4E-06 5.1E-11 70.9 9.3 72 92-169 31-103 (259)
146 KOG0820 Ribosomal RNA adenine 98.4 2.5E-06 5.4E-11 71.1 9.3 87 76-169 45-131 (315)
147 KOG3420 Predicted RNA methylas 98.4 1.3E-06 2.9E-11 66.8 6.6 89 76-168 31-121 (185)
148 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.7E-06 3.8E-11 80.7 8.8 76 92-168 539-615 (702)
149 PRK05031 tRNA (uracil-5-)-meth 98.3 1.3E-06 2.9E-11 75.5 7.3 73 77-154 191-265 (362)
150 TIGR02143 trmA_only tRNA (urac 98.3 1.4E-06 3E-11 75.1 7.2 73 77-154 182-256 (353)
151 PF02390 Methyltransf_4: Putat 98.3 3.4E-06 7.3E-11 67.1 8.2 78 91-171 17-98 (195)
152 PF00398 RrnaAD: Ribosomal RNA 98.3 7.2E-06 1.6E-10 67.8 9.8 95 67-169 8-105 (262)
153 PLN02781 Probable caffeoyl-CoA 98.3 4.1E-06 8.9E-11 68.3 8.1 82 83-168 61-151 (234)
154 PF03291 Pox_MCEL: mRNA cappin 98.2 6.6E-06 1.4E-10 70.6 9.4 97 70-169 42-153 (331)
155 PRK13256 thiopurine S-methyltr 98.2 7.9E-06 1.7E-10 66.6 9.4 75 91-167 43-130 (226)
156 KOG1499 Protein arginine N-met 98.2 3.8E-06 8.2E-11 72.0 7.1 75 92-169 61-135 (346)
157 PF01170 UPF0020: Putative RNA 98.2 4.9E-06 1.1E-10 65.2 7.2 95 70-169 9-114 (179)
158 PLN02232 ubiquinone biosynthes 98.2 2.5E-06 5.4E-11 65.5 5.0 51 119-169 1-52 (160)
159 PRK00050 16S rRNA m(4)C1402 me 98.2 7.9E-06 1.7E-10 69.1 7.8 76 90-169 18-98 (296)
160 PF05185 PRMT5: PRMT5 arginine 98.1 1.8E-05 3.9E-10 70.5 9.6 76 92-169 187-266 (448)
161 PF05724 TPMT: Thiopurine S-me 98.0 2.5E-05 5.4E-10 63.3 8.1 75 91-167 37-122 (218)
162 COG3963 Phospholipid N-methylt 98.0 2E-05 4.4E-10 61.6 7.1 72 91-169 48-125 (194)
163 PF01596 Methyltransf_3: O-met 98.0 6E-05 1.3E-09 60.5 10.1 83 81-167 36-127 (205)
164 PF05148 Methyltransf_8: Hypot 98.0 2E-05 4.3E-10 63.6 7.2 59 92-170 73-131 (219)
165 PF09243 Rsm22: Mitochondrial 98.0 2.1E-05 4.6E-10 65.6 7.3 44 92-135 34-78 (274)
166 PLN02823 spermine synthase 98.0 4.5E-05 9.8E-10 65.6 9.2 81 91-171 103-186 (336)
167 COG0220 Predicted S-adenosylme 98.0 1.6E-05 3.5E-10 64.8 6.1 76 93-171 50-129 (227)
168 COG2265 TrmA SAM-dependent met 98.0 3E-05 6.6E-10 68.7 8.3 86 77-167 277-368 (432)
169 KOG2899 Predicted methyltransf 98.0 2E-05 4.4E-10 64.9 6.5 43 93-135 60-102 (288)
170 PF05958 tRNA_U5-meth_tr: tRNA 98.0 3.5E-05 7.6E-10 66.5 8.2 58 93-155 198-256 (352)
171 TIGR00095 RNA methyltransferas 97.9 5.9E-05 1.3E-09 59.6 8.5 74 92-167 50-127 (189)
172 PF05219 DREV: DREV methyltran 97.9 2.3E-05 5E-10 65.0 6.3 64 92-168 95-158 (265)
173 KOG1975 mRNA cap methyltransfe 97.9 2.2E-05 4.7E-10 67.0 5.8 80 89-169 115-204 (389)
174 PF10294 Methyltransf_16: Puta 97.9 8.7E-05 1.9E-09 57.7 8.7 77 91-168 45-126 (173)
175 PRK04338 N(2),N(2)-dimethylgua 97.8 3.3E-05 7.2E-10 67.4 6.2 74 92-168 58-132 (382)
176 COG4122 Predicted O-methyltran 97.8 0.0001 2.2E-09 59.9 8.2 74 91-167 59-138 (219)
177 PLN02476 O-methyltransferase 97.8 0.00013 2.9E-09 61.2 8.9 73 92-167 119-200 (278)
178 PRK11783 rlmL 23S rRNA m(2)G24 97.8 8.6E-05 1.9E-09 69.5 8.6 95 70-168 170-310 (702)
179 PF13679 Methyltransf_32: Meth 97.8 0.0002 4.3E-09 53.8 8.9 45 90-135 24-73 (141)
180 COG0421 SpeE Spermidine syntha 97.7 0.00021 4.6E-09 60.1 9.3 80 92-171 77-159 (282)
181 COG0500 SmtA SAM-dependent met 97.7 0.00027 5.8E-09 49.0 8.3 69 95-167 52-125 (257)
182 PRK01544 bifunctional N5-gluta 97.7 7.7E-05 1.7E-09 67.4 6.5 79 90-171 346-427 (506)
183 PRK11760 putative 23S rRNA C24 97.7 0.00017 3.7E-09 62.2 8.2 72 90-172 210-281 (357)
184 PF00891 Methyltransf_2: O-met 97.7 0.00019 4.2E-09 58.1 7.6 66 91-168 100-165 (241)
185 PF09445 Methyltransf_15: RNA 97.7 6.7E-05 1.5E-09 58.3 4.6 70 94-168 2-76 (163)
186 PF02475 Met_10: Met-10+ like- 97.6 0.00021 4.5E-09 57.3 7.3 80 89-170 99-178 (200)
187 KOG3045 Predicted RNA methylas 97.6 0.00013 2.8E-09 60.8 6.2 57 92-170 181-237 (325)
188 KOG2361 Predicted methyltransf 97.6 6.8E-05 1.5E-09 61.7 4.3 76 93-169 73-152 (264)
189 KOG1500 Protein arginine N-met 97.6 0.00024 5.1E-09 61.3 7.4 73 92-168 178-250 (517)
190 PF06080 DUF938: Protein of un 97.6 0.00048 1E-08 55.4 8.7 75 94-169 28-110 (204)
191 PF03141 Methyltransf_29: Puta 97.6 7.8E-05 1.7E-09 66.7 4.3 68 93-168 119-188 (506)
192 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00025 5.5E-09 58.5 6.9 73 92-167 80-162 (247)
193 TIGR01444 fkbM_fam methyltrans 97.5 0.00019 4.1E-09 53.1 5.5 42 94-135 1-42 (143)
194 COG4076 Predicted RNA methylas 97.5 0.00042 9.2E-09 55.4 7.6 72 93-171 34-106 (252)
195 TIGR02987 met_A_Alw26 type II 97.5 0.00029 6.3E-09 63.6 7.6 44 92-135 32-83 (524)
196 COG2519 GCD14 tRNA(1-methylade 97.5 0.00064 1.4E-08 56.2 8.8 78 90-171 93-173 (256)
197 KOG1661 Protein-L-isoaspartate 97.5 0.00054 1.2E-08 55.4 8.0 88 83-170 74-171 (237)
198 KOG3191 Predicted N6-DNA-methy 97.4 0.0022 4.7E-08 51.0 10.5 73 92-168 44-117 (209)
199 PF05891 Methyltransf_PK: AdoM 97.4 0.00046 1E-08 55.9 6.9 76 91-169 55-130 (218)
200 PF02527 GidB: rRNA small subu 97.4 0.00064 1.4E-08 53.7 7.6 74 93-170 50-124 (184)
201 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.00068 1.5E-08 56.9 7.9 92 72-168 29-132 (311)
202 PF08704 GCD14: tRNA methyltra 97.4 0.0028 6.1E-08 52.4 10.9 97 68-169 19-121 (247)
203 COG0116 Predicted N6-adenine-s 97.4 0.00066 1.4E-08 59.2 7.4 98 67-169 169-307 (381)
204 PF01564 Spermine_synth: Sperm 97.4 0.00085 1.8E-08 55.2 7.7 81 91-171 76-160 (246)
205 COG1041 Predicted DNA modifica 97.3 0.00072 1.6E-08 58.3 6.8 72 91-167 197-270 (347)
206 TIGR03439 methyl_EasF probable 97.2 0.0037 8E-08 53.5 10.4 79 91-169 76-164 (319)
207 KOG2187 tRNA uracil-5-methyltr 97.2 0.00064 1.4E-08 61.1 5.6 60 91-155 383-443 (534)
208 PRK11933 yebU rRNA (cytosine-C 97.2 0.0016 3.4E-08 58.5 7.9 93 71-166 93-188 (470)
209 PF03602 Cons_hypoth95: Conser 97.1 0.0012 2.5E-08 52.1 6.0 89 75-167 26-120 (183)
210 PRK00536 speE spermidine synth 97.1 0.0032 6.9E-08 52.5 8.8 76 90-170 71-148 (262)
211 PF01739 CheR: CheR methyltran 97.0 0.0012 2.7E-08 52.6 5.2 99 69-169 11-144 (196)
212 PF01728 FtsJ: FtsJ-like methy 96.8 0.0015 3.2E-08 50.6 4.0 36 91-126 23-59 (181)
213 COG0357 GidB Predicted S-adeno 96.8 0.015 3.2E-07 47.2 9.6 75 92-169 68-143 (215)
214 PF04816 DUF633: Family of unk 96.8 0.0062 1.3E-07 48.9 7.4 70 95-168 1-73 (205)
215 PF07091 FmrO: Ribosomal RNA m 96.8 0.0085 1.8E-07 49.6 8.3 73 91-167 105-177 (251)
216 PRK10611 chemotaxis methyltran 96.8 0.0035 7.7E-08 52.9 6.0 76 93-168 117-230 (287)
217 KOG1331 Predicted methyltransf 96.7 0.0014 3.1E-08 55.0 3.2 66 92-169 46-111 (293)
218 COG0293 FtsJ 23S rRNA methylas 96.6 0.0084 1.8E-07 48.3 7.1 70 88-170 42-120 (205)
219 COG2521 Predicted archaeal met 96.6 0.0011 2.4E-08 54.6 2.1 94 68-167 115-211 (287)
220 COG1092 Predicted SAM-dependen 96.5 0.0058 1.3E-07 53.7 6.0 75 92-167 218-296 (393)
221 KOG3987 Uncharacterized conser 96.5 0.00035 7.5E-09 56.7 -1.5 42 91-134 112-153 (288)
222 COG2520 Predicted methyltransf 96.5 0.011 2.3E-07 51.1 7.3 81 86-170 183-265 (341)
223 KOG2352 Predicted spermine/spe 96.4 0.013 2.8E-07 52.5 7.8 77 90-170 46-123 (482)
224 PF10672 Methyltrans_SAM: S-ad 96.4 0.0069 1.5E-07 51.1 5.3 75 92-167 124-201 (286)
225 COG4262 Predicted spermidine s 96.3 0.013 2.9E-07 51.2 7.0 81 91-171 289-375 (508)
226 PF05971 Methyltransf_10: Prot 96.3 0.029 6.3E-07 47.7 8.7 74 93-168 104-184 (299)
227 TIGR00308 TRM1 tRNA(guanine-26 96.2 0.0076 1.7E-07 52.6 5.0 72 93-167 46-120 (374)
228 COG3897 Predicted methyltransf 96.1 0.011 2.5E-07 47.4 4.9 70 92-168 80-149 (218)
229 TIGR00006 S-adenosyl-methyltra 96.0 0.042 9E-07 46.8 8.4 77 90-169 19-100 (305)
230 PF08123 DOT1: Histone methyla 96.0 0.026 5.7E-07 45.3 6.6 80 91-170 42-131 (205)
231 KOG4589 Cell division protein 95.9 0.025 5.4E-07 45.3 6.0 70 89-171 67-146 (232)
232 KOG2730 Methylase [General fun 95.8 0.04 8.6E-07 45.2 7.1 90 71-166 75-170 (263)
233 PF02636 Methyltransf_28: Puta 95.8 0.039 8.4E-07 45.2 7.2 43 93-135 20-70 (252)
234 KOG1269 SAM-dependent methyltr 95.5 0.02 4.3E-07 49.9 4.6 77 90-168 109-185 (364)
235 COG0742 N6-adenine-specific me 95.3 0.13 2.8E-06 40.9 8.1 95 71-167 23-120 (187)
236 COG2384 Predicted SAM-dependen 95.2 0.15 3.3E-06 41.6 8.3 78 90-169 15-93 (226)
237 COG3129 Predicted SAM-dependen 94.9 0.084 1.8E-06 43.7 6.2 99 67-168 55-160 (292)
238 cd00315 Cyt_C5_DNA_methylase C 94.9 0.091 2E-06 43.7 6.6 66 94-168 2-69 (275)
239 COG0144 Sun tRNA and rRNA cyto 94.7 0.2 4.2E-06 43.5 8.4 76 89-167 154-235 (355)
240 PF12147 Methyltransf_20: Puta 94.7 0.55 1.2E-05 40.0 10.7 75 92-169 136-217 (311)
241 PF01269 Fibrillarin: Fibrilla 94.6 0.26 5.5E-06 40.4 8.2 95 67-169 48-151 (229)
242 COG1189 Predicted rRNA methyla 94.3 0.045 9.8E-07 45.1 3.3 42 88-130 76-117 (245)
243 KOG1663 O-methyltransferase [S 94.2 0.36 7.7E-06 39.7 8.4 73 92-167 74-155 (237)
244 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.2 0.097 2.1E-06 43.9 5.2 93 70-167 66-162 (283)
245 PF07757 AdoMet_MTase: Predict 94.0 0.09 1.9E-06 38.3 4.0 31 91-123 58-88 (112)
246 COG1352 CheR Methylase of chem 94.0 0.25 5.4E-06 41.4 7.2 43 92-134 97-148 (268)
247 COG1565 Uncharacterized conser 93.9 0.32 6.9E-06 42.4 7.8 65 71-135 56-129 (370)
248 PRK10742 putative methyltransf 93.5 0.39 8.4E-06 39.9 7.5 73 93-167 90-170 (250)
249 PF07942 N2227: N2227-like pro 93.4 0.24 5.1E-06 41.6 6.1 41 90-132 55-95 (270)
250 KOG2651 rRNA adenine N-6-methy 93.0 0.35 7.7E-06 42.6 6.8 42 92-134 154-195 (476)
251 PF01795 Methyltransf_5: MraW 92.5 0.49 1.1E-05 40.4 6.9 75 90-167 19-99 (310)
252 KOG3115 Methyltransferase-like 92.4 0.15 3.3E-06 41.4 3.5 44 93-136 62-105 (249)
253 PF03059 NAS: Nicotianamine sy 92.4 0.83 1.8E-05 38.4 8.0 77 92-168 121-199 (276)
254 COG1889 NOP1 Fibrillarin-like 92.1 0.5 1.1E-05 38.3 6.1 97 67-167 51-151 (231)
255 KOG2915 tRNA(1-methyladenosine 92.1 0.96 2.1E-05 38.3 7.9 75 90-167 104-183 (314)
256 PF04445 SAM_MT: Putative SAM- 91.0 1 2.2E-05 37.0 7.0 73 93-167 77-157 (234)
257 PF11599 AviRa: RRNA methyltra 91.0 0.5 1.1E-05 38.7 5.0 44 91-134 51-96 (246)
258 PF11968 DUF3321: Putative met 90.8 0.59 1.3E-05 38.0 5.3 58 93-170 53-113 (219)
259 PF05206 TRM13: Methyltransfer 90.7 0.49 1.1E-05 39.4 4.9 66 90-157 17-87 (259)
260 PF01555 N6_N4_Mtase: DNA meth 90.6 1.2 2.7E-05 34.5 6.9 42 89-132 189-230 (231)
261 KOG1501 Arginine N-methyltrans 90.0 1 2.3E-05 40.6 6.5 42 93-135 68-109 (636)
262 PHA01634 hypothetical protein 89.8 0.89 1.9E-05 34.4 5.1 60 69-134 11-70 (156)
263 PF01234 NNMT_PNMT_TEMT: NNMT/ 89.6 0.69 1.5E-05 38.5 4.9 39 92-131 57-95 (256)
264 KOG2793 Putative N2,N2-dimethy 87.8 1.8 3.9E-05 35.9 6.2 40 91-131 86-125 (248)
265 PF13578 Methyltransf_24: Meth 87.1 0.14 3E-06 35.9 -0.7 67 96-167 1-75 (106)
266 PLN02668 indole-3-acetate carb 87.0 0.6 1.3E-05 41.1 3.1 20 151-170 152-171 (386)
267 KOG4058 Uncharacterized conser 86.2 1.9 4E-05 33.6 5.0 43 90-133 71-113 (199)
268 COG0275 Predicted S-adenosylme 86.0 4.8 0.0001 34.5 7.9 63 90-155 22-85 (314)
269 COG0286 HsdM Type I restrictio 85.7 3 6.5E-05 37.7 7.0 95 70-169 167-272 (489)
270 COG1064 AdhP Zn-dependent alco 85.0 3.4 7.5E-05 35.8 6.7 71 90-169 165-237 (339)
271 cd08283 FDH_like_1 Glutathione 84.9 2.1 4.6E-05 36.8 5.5 43 91-133 184-227 (386)
272 KOG0822 Protein kinase inhibit 84.5 2.4 5.3E-05 39.0 5.7 98 70-169 345-447 (649)
273 KOG2811 Uncharacterized conser 84.5 3 6.6E-05 36.6 6.1 61 93-156 184-247 (420)
274 PF01861 DUF43: Protein of unk 84.3 9 0.00019 31.7 8.6 72 92-167 45-118 (243)
275 KOG1122 tRNA and rRNA cytosine 83.6 3.3 7.1E-05 37.0 6.0 74 89-166 239-317 (460)
276 PRK11524 putative methyltransf 83.5 5.5 0.00012 33.1 7.2 45 89-135 206-250 (284)
277 KOG2920 Predicted methyltransf 82.5 2.1 4.4E-05 36.2 4.2 39 90-129 115-153 (282)
278 KOG3178 Hydroxyindole-O-methyl 82.4 6.4 0.00014 34.2 7.3 53 92-152 178-230 (342)
279 PF00145 DNA_methylase: C-5 cy 82.3 2 4.4E-05 35.4 4.2 64 94-168 2-68 (335)
280 PRK13699 putative methylase; P 81.9 7.6 0.00016 31.5 7.2 45 89-135 161-205 (227)
281 KOG1562 Spermidine synthase [A 81.8 2.1 4.6E-05 36.6 4.0 81 91-171 121-205 (337)
282 PF05050 Methyltransf_21: Meth 81.5 3.7 7.9E-05 30.2 4.9 38 97-134 1-42 (167)
283 COG5459 Predicted rRNA methyla 80.6 1.3 2.8E-05 39.0 2.4 73 93-167 115-191 (484)
284 PRK09496 trkA potassium transp 80.3 22 0.00048 31.0 10.2 72 91-171 230-307 (453)
285 TIGR00675 dcm DNA-methyltransf 79.5 3.8 8.3E-05 34.7 5.0 65 95-168 1-66 (315)
286 COG1063 Tdh Threonine dehydrog 78.7 5.8 0.00013 34.0 5.9 41 93-133 170-211 (350)
287 KOG0024 Sorbitol dehydrogenase 78.1 5.1 0.00011 34.7 5.2 43 91-133 169-212 (354)
288 PF02254 TrkA_N: TrkA-N domain 78.0 7.2 0.00016 27.3 5.3 63 100-171 4-72 (116)
289 KOG1596 Fibrillarin and relate 77.7 5.9 0.00013 33.2 5.3 66 67-132 131-202 (317)
290 PF12692 Methyltransf_17: S-ad 77.6 6.9 0.00015 30.2 5.3 33 92-124 29-61 (160)
291 KOG2539 Mitochondrial/chloropl 77.6 4.8 0.0001 36.4 5.1 79 91-169 200-282 (491)
292 KOG0821 Predicted ribosomal RN 77.5 12 0.00027 31.0 7.1 73 53-129 14-87 (326)
293 PF11899 DUF3419: Protein of u 76.0 7 0.00015 34.4 5.7 41 90-132 34-74 (380)
294 PF06962 rRNA_methylase: Putat 75.6 5.6 0.00012 30.1 4.4 50 117-169 1-54 (140)
295 COG4301 Uncharacterized conser 75.5 16 0.00034 30.9 7.2 61 92-153 79-143 (321)
296 TIGR02356 adenyl_thiF thiazole 74.3 10 0.00022 30.0 5.8 31 93-124 22-54 (202)
297 COG1748 LYS9 Saccharopine dehy 73.5 17 0.00037 32.1 7.5 68 93-169 2-76 (389)
298 PRK09880 L-idonate 5-dehydroge 71.9 12 0.00027 31.3 6.1 43 91-133 169-212 (343)
299 PRK08644 thiamine biosynthesis 71.2 32 0.0007 27.4 8.1 31 93-124 29-61 (212)
300 KOG1709 Guanidinoacetate methy 71.2 42 0.00091 27.8 8.6 73 91-167 101-175 (271)
301 cd08254 hydroxyacyl_CoA_DH 6-h 69.7 26 0.00056 28.7 7.5 42 91-133 165-207 (338)
302 KOG2798 Putative trehalase [Ca 69.1 8.3 0.00018 33.4 4.4 75 55-131 112-188 (369)
303 cd01487 E1_ThiF_like E1_ThiF_l 68.3 22 0.00047 27.4 6.3 31 94-125 1-33 (174)
304 COG0569 TrkA K+ transport syst 67.7 34 0.00073 27.5 7.5 69 94-171 2-76 (225)
305 PRK12475 thiamine/molybdopteri 66.8 17 0.00038 31.2 6.0 32 93-125 25-58 (338)
306 PTZ00357 methyltransferase; Pr 66.8 25 0.00054 33.9 7.2 75 94-169 703-800 (1072)
307 PF04672 Methyltransf_19: S-ad 66.2 16 0.00035 30.7 5.4 61 92-154 69-132 (267)
308 cd08232 idonate-5-DH L-idonate 66.2 20 0.00043 29.7 6.1 43 91-133 165-208 (339)
309 PRK10669 putative cation:proto 65.0 19 0.00042 32.8 6.2 68 93-171 418-491 (558)
310 cd01065 NAD_bind_Shikimate_DH 63.9 48 0.001 24.1 7.3 40 91-131 18-59 (155)
311 PRK03659 glutathione-regulated 63.6 19 0.00042 33.3 6.0 68 93-171 401-474 (601)
312 COG0270 Dcm Site-specific DNA 62.1 25 0.00055 29.8 6.1 68 93-168 4-74 (328)
313 COG4017 Uncharacterized protei 60.7 48 0.001 27.0 6.9 63 89-167 42-105 (254)
314 KOG2352 Predicted spermine/spe 60.3 6 0.00013 35.8 2.0 43 91-133 295-337 (482)
315 PF02005 TRM: N2,N2-dimethylgu 60.3 14 0.0003 32.4 4.2 70 93-165 51-125 (377)
316 PRK03562 glutathione-regulated 59.7 23 0.00049 33.0 5.8 68 93-171 401-474 (621)
317 PRK07502 cyclohexadienyl dehyd 59.2 34 0.00074 28.5 6.3 41 92-132 6-48 (307)
318 COG2933 Predicted SAM-dependen 59.1 37 0.0008 29.0 6.3 72 90-172 210-281 (358)
319 KOG1098 Putative SAM-dependent 58.7 9.9 0.00021 35.8 3.1 34 92-125 45-79 (780)
320 PRK09496 trkA potassium transp 58.7 59 0.0013 28.3 8.0 68 94-171 2-75 (453)
321 KOG3201 Uncharacterized conser 58.2 4.1 8.9E-05 32.1 0.5 42 93-134 31-73 (201)
322 PF07101 DUF1363: Protein of u 57.5 3.7 8.1E-05 29.4 0.2 15 95-109 6-20 (124)
323 PRK07688 thiamine/molybdopteri 56.6 41 0.00089 28.9 6.5 31 93-124 25-57 (339)
324 PRK08217 fabG 3-ketoacyl-(acyl 56.6 63 0.0014 25.1 7.2 71 93-169 6-90 (253)
325 cd01489 Uba2_SUMO Ubiquitin ac 56.6 67 0.0015 27.5 7.7 30 94-124 1-32 (312)
326 PRK08762 molybdopterin biosynt 56.3 32 0.00069 29.8 5.8 31 93-124 136-168 (376)
327 COG1867 TRM1 N2,N2-dimethylgua 55.0 23 0.0005 31.2 4.6 44 92-135 53-96 (380)
328 PF03492 Methyltransf_7: SAM d 53.8 11 0.00024 32.4 2.5 79 92-170 17-116 (334)
329 PF04989 CmcI: Cephalosporin h 53.8 39 0.00084 27.3 5.5 60 92-154 33-96 (206)
330 cd08245 CAD Cinnamyl alcohol d 52.4 79 0.0017 25.9 7.4 42 91-133 162-204 (330)
331 cd08234 threonine_DH_like L-th 52.4 90 0.002 25.5 7.8 43 91-133 159-202 (334)
332 PF02719 Polysacc_synt_2: Poly 51.4 61 0.0013 27.5 6.6 75 95-170 1-86 (293)
333 PRK12548 shikimate 5-dehydroge 51.1 77 0.0017 26.4 7.1 32 92-126 126-161 (289)
334 COG5379 BtaA S-adenosylmethion 50.9 41 0.00089 29.1 5.4 40 91-132 63-102 (414)
335 COG0062 Uncharacterized conser 50.6 1.3E+02 0.0028 24.1 10.5 53 69-122 24-85 (203)
336 TIGR02354 thiF_fam2 thiamine b 49.8 32 0.00068 27.2 4.4 37 93-130 22-63 (200)
337 cd01488 Uba3_RUB Ubiquitin act 49.6 91 0.002 26.4 7.4 30 94-124 1-32 (291)
338 PRK05854 short chain dehydroge 49.5 1.4E+02 0.003 24.7 8.5 75 92-169 14-101 (313)
339 TIGR03201 dearomat_had 6-hydro 48.8 44 0.00094 28.1 5.4 42 91-133 166-208 (349)
340 cd05188 MDR Medium chain reduc 47.4 52 0.0011 25.6 5.4 43 90-133 133-176 (271)
341 PF03435 Saccharop_dh: Sacchar 46.7 66 0.0014 27.6 6.3 68 95-169 1-75 (386)
342 KOG1269 SAM-dependent methyltr 46.6 15 0.00033 32.1 2.2 44 92-135 181-224 (364)
343 PRK10458 DNA cytosine methylas 46.4 1E+02 0.0023 27.8 7.6 39 93-132 89-127 (467)
344 PRK05650 short chain dehydroge 46.3 84 0.0018 25.0 6.5 70 94-169 2-85 (270)
345 PRK09291 short chain dehydroge 46.2 1.4E+02 0.003 23.3 7.7 71 93-169 3-81 (257)
346 KOG1099 SAM-dependent methyltr 45.7 30 0.00066 28.9 3.7 65 93-170 43-124 (294)
347 PLN02166 dTDP-glucose 4,6-dehy 45.1 97 0.0021 27.4 7.2 36 88-124 116-153 (436)
348 TIGR03451 mycoS_dep_FDH mycoth 44.9 57 0.0012 27.5 5.5 44 90-133 175-219 (358)
349 PRK11908 NAD-dependent epimera 44.3 75 0.0016 26.6 6.1 67 93-168 2-75 (347)
350 TIGR01381 E1_like_apg7 E1-like 44.2 33 0.00071 32.5 4.1 32 92-124 338-371 (664)
351 PLN02427 UDP-apiose/xylose syn 44.2 66 0.0014 27.4 5.9 74 93-169 15-94 (386)
352 KOG1430 C-3 sterol dehydrogena 43.7 56 0.0012 28.6 5.3 67 92-163 4-75 (361)
353 TIGR02818 adh_III_F_hyde S-(hy 43.6 60 0.0013 27.6 5.5 44 90-133 184-228 (368)
354 PRK06035 3-hydroxyacyl-CoA deh 43.4 63 0.0014 26.7 5.5 39 93-133 4-44 (291)
355 TIGR00497 hsdM type I restrict 43.2 1.3E+02 0.0029 27.1 7.8 64 70-133 196-263 (501)
356 PRK06194 hypothetical protein; 43.2 1.6E+02 0.0035 23.5 7.8 71 93-169 7-91 (287)
357 cd08237 ribitol-5-phosphate_DH 43.0 56 0.0012 27.4 5.2 43 90-132 162-206 (341)
358 KOG2872 Uroporphyrinogen decar 43.0 86 0.0019 27.0 6.1 57 74-132 233-289 (359)
359 KOG1252 Cystathionine beta-syn 42.6 39 0.00084 29.5 4.1 38 93-130 213-254 (362)
360 PRK08339 short chain dehydroge 42.5 1.8E+02 0.0038 23.3 8.1 74 92-169 8-93 (263)
361 cd08255 2-desacetyl-2-hydroxye 42.3 62 0.0013 25.8 5.1 44 90-133 96-140 (277)
362 PRK08267 short chain dehydroge 42.2 1.6E+02 0.0035 23.1 7.5 69 93-169 2-85 (260)
363 PF03853 YjeF_N: YjeF-related 42.0 63 0.0014 24.7 4.9 50 73-123 4-62 (169)
364 PLN00141 Tic62-NAD(P)-related 41.3 1.5E+02 0.0032 23.5 7.2 70 92-169 17-93 (251)
365 PRK07904 short chain dehydroge 41.0 1.5E+02 0.0033 23.6 7.2 74 92-169 8-95 (253)
366 COG0373 HemA Glutamyl-tRNA red 41.0 1.4E+02 0.0031 26.6 7.5 108 47-170 134-247 (414)
367 KOG1209 1-Acyl dihydroxyaceton 40.8 59 0.0013 27.0 4.6 72 91-169 6-89 (289)
368 PRK07890 short chain dehydroge 40.7 1.7E+02 0.0038 22.8 7.8 71 93-169 6-90 (258)
369 PRK06124 gluconate 5-dehydroge 40.4 1.8E+02 0.0039 22.8 7.9 73 91-169 10-96 (256)
370 PRK08277 D-mannonate oxidoredu 40.2 1.6E+02 0.0035 23.5 7.3 72 93-169 11-95 (278)
371 PLN02819 lysine-ketoglutarate 40.1 54 0.0012 32.8 5.1 71 92-169 569-656 (1042)
372 cd05285 sorbitol_DH Sorbitol d 40.0 1.6E+02 0.0036 24.3 7.5 43 91-133 162-205 (343)
373 COG4798 Predicted methyltransf 39.6 65 0.0014 26.3 4.7 36 90-125 47-83 (238)
374 PRK05562 precorrin-2 dehydroge 39.3 1.1E+02 0.0024 24.8 6.1 70 91-171 24-95 (223)
375 PF05059 Orbi_VP4: Orbivirus V 39.1 47 0.001 31.0 4.3 47 78-124 177-227 (644)
376 PRK06718 precorrin-2 dehydroge 39.1 1.6E+02 0.0034 23.2 6.9 67 92-171 10-80 (202)
377 PLN02740 Alcohol dehydrogenase 39.1 71 0.0015 27.3 5.3 43 91-133 198-241 (381)
378 PRK08340 glucose-1-dehydrogena 38.9 1.7E+02 0.0037 23.1 7.2 38 94-133 2-42 (259)
379 PRK05867 short chain dehydroge 38.8 1.9E+02 0.0041 22.6 7.7 73 92-169 9-94 (253)
380 PRK12767 carbamoyl phosphate s 38.7 44 0.00096 27.7 3.8 34 93-126 2-36 (326)
381 PRK08703 short chain dehydroge 38.6 1.9E+02 0.004 22.4 8.3 36 93-131 7-46 (239)
382 PRK05866 short chain dehydroge 38.4 2.1E+02 0.0045 23.4 7.8 71 93-169 41-125 (293)
383 PRK07417 arogenate dehydrogena 38.4 76 0.0016 26.1 5.2 38 94-133 2-41 (279)
384 PLN02206 UDP-glucuronate decar 38.2 1.3E+02 0.0027 26.8 6.8 73 89-169 116-191 (442)
385 PRK10310 PTS system galactitol 37.9 74 0.0016 22.0 4.3 15 94-109 4-18 (94)
386 COG1086 Predicted nucleoside-d 37.5 1.6E+02 0.0034 27.6 7.4 75 93-169 251-333 (588)
387 cd08281 liver_ADH_like1 Zinc-d 37.5 81 0.0018 26.7 5.4 43 91-133 191-234 (371)
388 cd01078 NAD_bind_H4MPT_DH NADP 37.4 1.7E+02 0.0038 22.3 6.8 38 92-132 28-69 (194)
389 PRK06200 2,3-dihydroxy-2,3-dih 36.8 2.1E+02 0.0044 22.6 7.4 39 92-132 6-47 (263)
390 cd05567 PTS_IIB_mannitol PTS_I 36.7 1.1E+02 0.0023 20.5 4.9 18 148-168 35-52 (87)
391 KOG2671 Putative RNA methylase 36.5 19 0.00042 31.6 1.3 76 90-167 207-290 (421)
392 PRK07774 short chain dehydroge 36.4 1.7E+02 0.0038 22.6 6.8 72 93-170 7-92 (250)
393 PRK06130 3-hydroxybutyryl-CoA 36.1 98 0.0021 25.7 5.5 40 92-133 4-45 (311)
394 PRK08226 short chain dehydroge 35.8 2.2E+02 0.0047 22.4 7.5 70 93-169 7-90 (263)
395 TIGR02622 CDP_4_6_dhtase CDP-g 35.5 1E+02 0.0022 25.8 5.6 34 93-127 5-40 (349)
396 KOG2078 tRNA modification enzy 35.0 40 0.00086 30.5 3.1 50 83-134 241-290 (495)
397 PRK08507 prephenate dehydrogen 35.0 1E+02 0.0022 25.1 5.4 39 94-132 2-42 (275)
398 TIGR01832 kduD 2-deoxy-D-gluco 34.7 2E+02 0.0044 22.2 7.0 32 92-125 5-39 (248)
399 PF03686 UPF0146: Uncharacteri 34.2 1.4E+02 0.003 22.3 5.4 34 91-126 13-47 (127)
400 PRK07819 3-hydroxybutyryl-CoA 33.8 1.2E+02 0.0025 25.2 5.6 40 93-134 6-47 (286)
401 PRK08265 short chain dehydroge 33.6 2.4E+02 0.0052 22.3 7.5 68 93-169 7-88 (261)
402 PLN02918 pyridoxine (pyridoxam 33.5 1.6E+02 0.0036 27.2 6.9 69 44-113 84-162 (544)
403 PRK06953 short chain dehydroge 33.2 2.2E+02 0.0048 21.8 7.5 36 94-131 3-41 (222)
404 PRK06101 short chain dehydroge 33.1 2.3E+02 0.0051 22.0 7.1 35 94-131 3-41 (240)
405 TIGR03366 HpnZ_proposed putati 33.0 1.1E+02 0.0024 24.8 5.3 43 91-133 120-163 (280)
406 PF02086 MethyltransfD12: D12 32.7 72 0.0016 25.4 4.1 40 91-132 20-59 (260)
407 TIGR00197 yjeF_nterm yjeF N-te 32.5 1.6E+02 0.0035 23.2 6.0 68 50-121 3-78 (205)
408 KOG3924 Putative protein methy 32.0 85 0.0018 28.0 4.6 42 90-131 191-232 (419)
409 PRK08293 3-hydroxybutyryl-CoA 31.9 1.2E+02 0.0027 24.9 5.5 40 93-134 4-45 (287)
410 PLN00203 glutamyl-tRNA reducta 31.9 2.1E+02 0.0045 26.3 7.2 38 92-132 266-307 (519)
411 PRK06172 short chain dehydroge 31.8 2.5E+02 0.0054 21.9 7.9 72 93-169 8-92 (253)
412 PRK10538 malonic semialdehyde 31.7 2.5E+02 0.0054 21.9 7.2 35 94-131 2-40 (248)
413 PLN02650 dihydroflavonol-4-red 31.5 1.6E+02 0.0035 24.6 6.2 76 92-169 5-85 (351)
414 TIGR00518 alaDH alanine dehydr 31.5 76 0.0017 27.5 4.3 40 92-132 167-207 (370)
415 PRK12823 benD 1,6-dihydroxycyc 31.4 2.5E+02 0.0055 21.9 7.7 71 93-169 9-92 (260)
416 PRK07063 short chain dehydroge 31.4 2.6E+02 0.0056 21.9 7.9 75 92-169 7-94 (260)
417 KOG2198 tRNA cytosine-5-methyl 31.2 2E+02 0.0042 25.5 6.6 45 89-133 153-201 (375)
418 PLN02827 Alcohol dehydrogenase 31.1 1.2E+02 0.0026 25.9 5.4 43 91-133 193-236 (378)
419 PRK06180 short chain dehydroge 31.0 2.8E+02 0.006 22.2 7.3 38 93-131 5-44 (277)
420 PRK06113 7-alpha-hydroxysteroi 30.7 2.6E+02 0.0057 21.9 7.8 72 92-169 11-96 (255)
421 PRK07066 3-hydroxybutyryl-CoA 30.7 1.4E+02 0.003 25.6 5.6 40 92-133 7-48 (321)
422 PRK09260 3-hydroxybutyryl-CoA 30.6 1.1E+02 0.0024 25.1 5.0 38 94-133 3-42 (288)
423 PRK12829 short chain dehydroge 30.5 2.6E+02 0.0057 21.8 7.6 70 92-169 11-94 (264)
424 PF03141 Methyltransf_29: Puta 30.0 82 0.0018 28.9 4.3 66 91-168 365-434 (506)
425 PRK07035 short chain dehydroge 30.0 2.7E+02 0.0058 21.7 7.8 38 93-132 9-49 (252)
426 PF03514 GRAS: GRAS domain fam 29.7 1.7E+02 0.0038 25.4 6.2 59 91-149 110-180 (374)
427 PRK09072 short chain dehydroge 29.4 2.8E+02 0.0061 21.8 8.0 71 93-169 6-88 (263)
428 TIGR03589 PseB UDP-N-acetylglu 29.4 3.3E+02 0.0072 22.6 7.8 71 93-169 5-82 (324)
429 PRK06139 short chain dehydroge 29.4 3.1E+02 0.0068 23.1 7.6 73 92-169 7-92 (330)
430 PRK05876 short chain dehydroge 29.2 3E+02 0.0066 22.1 7.9 71 93-169 7-91 (275)
431 TIGR01202 bchC 2-desacetyl-2-h 29.2 1.1E+02 0.0024 25.2 4.7 42 91-132 144-186 (308)
432 PF01488 Shikimate_DH: Shikima 29.2 1.5E+02 0.0033 21.5 5.0 71 92-170 12-84 (135)
433 PLN02780 ketoreductase/ oxidor 29.2 2.9E+02 0.0063 23.1 7.3 40 92-133 53-95 (320)
434 COG1062 AdhC Zn-dependent alco 29.1 1.5E+02 0.0032 26.1 5.5 44 90-133 184-228 (366)
435 PRK05993 short chain dehydroge 29.1 2.6E+02 0.0056 22.4 6.9 37 93-132 5-45 (277)
436 PRK10675 UDP-galactose-4-epime 29.1 2.4E+02 0.0051 23.2 6.7 29 94-123 2-32 (338)
437 PLN02545 3-hydroxybutyryl-CoA 29.1 1.5E+02 0.0033 24.4 5.5 39 92-132 4-44 (295)
438 PRK07677 short chain dehydroge 29.0 2.8E+02 0.0061 21.6 7.7 38 93-132 2-42 (252)
439 PRK08862 short chain dehydroge 28.9 2.9E+02 0.0062 21.7 7.5 39 93-133 6-47 (227)
440 cd01493 APPBP1_RUB Ubiquitin a 28.6 4.3E+02 0.0092 23.6 9.8 30 93-124 21-53 (425)
441 PRK07024 short chain dehydroge 28.6 2.9E+02 0.0063 21.7 7.6 70 93-169 3-86 (257)
442 cd08278 benzyl_alcohol_DH Benz 28.5 1.6E+02 0.0034 24.8 5.7 43 91-133 186-229 (365)
443 PLN02260 probable rhamnose bio 28.5 1.8E+02 0.0039 27.0 6.4 72 93-170 7-89 (668)
444 PF00107 ADH_zinc_N: Zinc-bind 28.4 79 0.0017 22.0 3.3 32 101-133 1-32 (130)
445 PRK08177 short chain dehydroge 28.2 2.3E+02 0.0051 21.7 6.3 34 94-129 3-39 (225)
446 cd01491 Ube1_repeat1 Ubiquitin 28.2 2.5E+02 0.0055 23.6 6.7 32 93-125 20-53 (286)
447 TIGR03325 BphB_TodD cis-2,3-di 28.0 3E+02 0.0065 21.7 7.5 37 93-131 6-45 (262)
448 PRK07109 short chain dehydroge 27.9 3.6E+02 0.0079 22.6 7.9 71 93-169 9-93 (334)
449 PLN02662 cinnamyl-alcohol dehy 27.7 2.4E+02 0.0051 22.9 6.5 76 92-169 4-84 (322)
450 TIGR00561 pntA NAD(P) transhyd 27.6 1.9E+02 0.0041 26.6 6.2 42 91-133 163-205 (511)
451 COG1255 Uncharacterized protei 27.5 1.5E+02 0.0033 22.0 4.5 32 93-126 15-47 (129)
452 cd05278 FDH_like Formaldehyde 27.3 1.7E+02 0.0037 24.0 5.6 43 91-133 167-210 (347)
453 PLN02896 cinnamyl-alcohol dehy 27.3 3E+02 0.0065 23.0 7.1 75 90-169 8-87 (353)
454 PRK06125 short chain dehydroge 27.2 3.1E+02 0.0067 21.5 8.1 73 92-169 7-89 (259)
455 PLN02989 cinnamyl-alcohol dehy 27.1 1.9E+02 0.0041 23.7 5.8 77 92-170 5-86 (325)
456 PRK11730 fadB multifunctional 26.9 1.5E+02 0.0032 28.3 5.6 41 92-134 313-355 (715)
457 PF12242 Eno-Rase_NADH_b: NAD( 26.8 81 0.0018 21.5 2.8 32 92-123 39-72 (78)
458 PRK08328 hypothetical protein; 26.8 91 0.002 25.1 3.7 31 93-124 28-60 (231)
459 PRK05708 2-dehydropantoate 2-r 26.6 3.5E+02 0.0076 22.5 7.4 38 93-132 3-42 (305)
460 TIGR01181 dTDP_gluc_dehyt dTDP 26.6 2.3E+02 0.0049 22.7 6.1 28 95-123 2-33 (317)
461 cd08285 NADP_ADH NADP(H)-depen 26.4 1.8E+02 0.0039 24.2 5.6 43 91-133 166-209 (351)
462 PRK07102 short chain dehydroge 26.3 3.1E+02 0.0067 21.2 7.4 71 93-168 2-83 (243)
463 PRK09424 pntA NAD(P) transhydr 26.1 1.4E+02 0.003 27.4 5.1 42 91-133 164-206 (509)
464 COG2344 AT-rich DNA-binding pr 26.1 3.6E+02 0.0077 21.9 7.9 72 49-128 42-123 (211)
465 PRK00045 hemA glutamyl-tRNA re 25.9 1.3E+02 0.0029 26.4 4.8 36 91-129 181-220 (423)
466 PRK11559 garR tartronate semia 25.8 1.4E+02 0.0031 24.4 4.8 37 94-132 4-42 (296)
467 PRK07814 short chain dehydroge 25.8 3.3E+02 0.0072 21.5 8.0 72 92-169 10-95 (263)
468 PRK07478 short chain dehydroge 25.8 3.2E+02 0.007 21.3 8.0 72 93-169 7-91 (254)
469 PRK07067 sorbitol dehydrogenas 25.6 3.3E+02 0.0071 21.3 7.3 37 93-132 7-47 (257)
470 COG4096 HsdR Type I site-speci 25.5 6.6E+02 0.014 24.8 10.6 61 70-133 166-233 (875)
471 PRK08223 hypothetical protein; 25.3 1E+02 0.0022 26.1 3.8 31 93-124 28-60 (287)
472 PRK06129 3-hydroxyacyl-CoA deh 25.3 1.7E+02 0.0037 24.3 5.2 38 93-132 3-42 (308)
473 PRK06719 precorrin-2 dehydroge 25.2 2.2E+02 0.0048 21.4 5.4 67 91-171 12-80 (157)
474 TIGR01035 hemA glutamyl-tRNA r 25.1 1.4E+02 0.0031 26.2 4.9 36 91-129 179-218 (417)
475 cd08300 alcohol_DH_class_III c 25.1 2E+02 0.0044 24.2 5.7 44 90-133 185-229 (368)
476 PRK07523 gluconate 5-dehydroge 25.0 3.4E+02 0.0073 21.2 7.8 72 92-169 10-95 (255)
477 PRK08251 short chain dehydroge 24.9 3.3E+02 0.0071 21.0 7.8 73 93-169 3-89 (248)
478 PLN02657 3,8-divinyl protochlo 24.9 1.5E+02 0.0033 25.6 5.0 73 92-169 60-144 (390)
479 PRK05808 3-hydroxybutyryl-CoA 24.7 1.8E+02 0.0039 23.7 5.2 38 93-132 4-43 (282)
480 COG0031 CysK Cysteine synthase 24.7 93 0.002 26.6 3.5 34 93-126 170-207 (300)
481 cd08301 alcohol_DH_plants Plan 24.4 1.9E+02 0.0041 24.3 5.4 41 91-133 187-230 (369)
482 PRK06153 hypothetical protein; 24.2 1.1E+02 0.0024 27.2 3.9 31 93-124 177-209 (393)
483 cd00757 ThiF_MoeB_HesA_family 24.2 1.1E+02 0.0023 24.4 3.7 31 93-124 22-54 (228)
484 PF14737 DUF4470: Domain of un 24.2 1.9E+02 0.0042 19.9 4.6 40 92-131 24-69 (100)
485 PRK07454 short chain dehydroge 24.1 3.4E+02 0.0073 20.9 7.9 72 92-169 6-91 (241)
486 cd01483 E1_enzyme_family Super 23.9 1.1E+02 0.0024 22.2 3.5 30 94-124 1-32 (143)
487 PRK15116 sulfur acceptor prote 23.3 1.8E+02 0.0038 24.3 4.9 31 93-124 31-63 (268)
488 cd08236 sugar_DH NAD(P)-depend 23.3 2.2E+02 0.0047 23.4 5.5 42 91-132 159-201 (343)
489 PRK08125 bifunctional UDP-gluc 23.1 1.9E+02 0.0041 26.9 5.5 68 92-168 315-389 (660)
490 cd05213 NAD_bind_Glutamyl_tRNA 23.0 1.8E+02 0.0038 24.5 4.9 37 91-129 177-216 (311)
491 PRK07097 gluconate 5-dehydroge 22.9 3.8E+02 0.0083 21.1 7.8 72 93-169 11-95 (265)
492 PF02153 PDH: Prephenate dehyd 22.7 1.5E+02 0.0033 24.1 4.4 29 105-133 1-29 (258)
493 PLN03209 translocon at the inn 22.7 4E+02 0.0086 25.0 7.4 77 92-169 80-167 (576)
494 cd08239 THR_DH_like L-threonin 22.7 2.3E+02 0.0049 23.4 5.5 43 91-133 163-206 (339)
495 PRK05786 fabG 3-ketoacyl-(acyl 22.7 3.5E+02 0.0077 20.6 7.6 37 92-131 5-45 (238)
496 PRK13394 3-hydroxybutyrate deh 22.6 3.7E+02 0.008 20.8 7.8 71 93-169 8-92 (262)
497 TIGR00853 pts-lac PTS system, 22.6 1.3E+02 0.0029 20.7 3.5 18 93-111 4-21 (95)
498 cd05563 PTS_IIB_ascorbate PTS_ 22.4 2.3E+02 0.0051 18.5 5.5 10 160-169 44-53 (86)
499 PRK08416 7-alpha-hydroxysteroi 22.4 3.9E+02 0.0084 21.0 7.6 74 92-169 8-95 (260)
500 PRK08643 acetoin reductase; Va 22.4 3.8E+02 0.0082 20.9 7.8 71 93-169 3-87 (256)
No 1
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.94 E-value=4.4e-27 Score=189.87 Aligned_cols=139 Identities=53% Similarity=0.854 Sum_probs=126.7
Q ss_pred HHhcCCCcccccCCccccCCCccccCCCCCcccccCHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHhHhhhccCCCeE
Q 030736 17 RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTA 95 (172)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iFDr~~k~~qr~Raa~~~~~-~d~l~~eva~~l~~rL~~i~r~~~~v 95 (172)
+.+||.-++.+.+.+|+|+ +...||||++|+.||+||++.+++ .+|++++++.+++||+.++++.|+.+
T Consensus 7 ~~st~~~~~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a 76 (325)
T KOG2940|consen 7 EKSTKQAHTFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTA 76 (325)
T ss_pred hhhHHHHHHHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcce
Confidence 5678888999999999886 568899999999999999998776 79999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+|||||-|++.++|..++ +++++.+|.|..|++.+++.. .+.+.+.+.++|+|.|||+++|||+|+|+++
T Consensus 77 ~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q----dp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 77 FDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ----DPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred eecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC----CCceEEEEEecchhcccccccchhhhhhhhh
Confidence 999999999999998765 899999999999999998531 4567888999999999999999999999975
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=5.3e-19 Score=144.49 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=97.6
Q ss_pred CCcccccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030736 45 SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 45 ~~~~~iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S 124 (172)
..+.++||+.++.+.+....-+.+.+..++++..+.+.. ++..+|||+|||||.++..+++..+.++|+++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s 84 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGI------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS 84 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCC------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC
Confidence 346789999999998776666678899999888776532 25689999999999999999986556899999999
Q ss_pred HHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEccC
Q 030736 125 YDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 125 ~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
++||+.++++..+ .+. .+.|+++|+|+|||+|+|||+|++++.
T Consensus 85 ~~ML~~a~~k~~~---~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 85 ESMLEVAREKLKK---KGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred HHHHHHHHHHhhc---cCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 9999999987632 222 388999999999999999999998763
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.74 E-value=6.5e-18 Score=137.81 Aligned_cols=118 Identities=21% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCcccccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEe
Q 030736 44 GSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMD 122 (172)
Q Consensus 44 ~~~~~~iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD 122 (172)
...+.++||+.+..+.+-....+.+.+..++..+.+.+. .++..+|||+|||||.++..+.+. ++.++|+++|
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~------~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD 79 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG------LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVD 79 (233)
T ss_dssp -------------------------------SHHHHHHT--------S--EEEEET-TTSHHHHHHGGGSS---EEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC------CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEec
Confidence 345778999999999876666567778888876655431 245679999999999999999875 3457999999
Q ss_pred CCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 123 TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 123 ~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+|++||+.++++... .....+.++++|+++|||++++||+|++++
T Consensus 80 ~s~~ML~~a~~k~~~--~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 80 ISPGMLEVARKKLKR--EGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp S-HHHHHHHHHHHHH--TT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCHHHHHHHHHHHHh--hCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 999999999876532 112278999999999999999999999876
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.74 E-value=2.2e-17 Score=134.67 Aligned_cols=110 Identities=23% Similarity=0.247 Sum_probs=94.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030736 50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 50 iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~ 129 (172)
..|+..++.+++|++..|+.+..++.++++.+++++.. .++.+|||+|||+|.++..|...+ .+|+++|+|++|++
T Consensus 3 ~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~ 78 (251)
T PRK10258 3 TVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLA 78 (251)
T ss_pred ccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHH
Confidence 46888999999999988999999999999999988763 356789999999999999998743 79999999999999
Q ss_pred HHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 130 LCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
.+++.. ....++++|.+.+|+++++||+|+|+++
T Consensus 79 ~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 79 QARQKD-------AADHYLAGDIESLPLATATFDLAWSNLA 112 (251)
T ss_pred HHHhhC-------CCCCEEEcCcccCcCCCCcEEEEEECch
Confidence 997532 1246789999999999999999999864
No 5
>PRK05785 hypothetical protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=125.82 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=84.1
Q ss_pred CcccccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH
Q 030736 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125 (172)
Q Consensus 46 ~~~~iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~ 125 (172)
.+..+||+.+..+++-......+....++.++...+...+ .+..+|||+|||||.++..|.+.. ..+|+|+|+|+
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~----~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~ 84 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC----GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAE 84 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc----CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCH
Confidence 3567899999998875443334555666666655543321 235789999999999999998753 36899999999
Q ss_pred HHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 126 ~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+||+.++++ ..++++|.+.+||++++||+|+++++
T Consensus 85 ~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 85 NMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred HHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecCh
Confidence 999999752 23578999999999999999999864
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=5.7e-15 Score=122.07 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~-~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||||.++..|.+. ++..+|+|+|+|++|++.++++.... ......+.++++|++.+||++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4579999999999999988864 33469999999999999997642100 011125788999999999999999999987
Q ss_pred cC
Q 030736 169 SL 170 (172)
Q Consensus 169 ~~ 170 (172)
++
T Consensus 153 ~~ 154 (261)
T PLN02233 153 YG 154 (261)
T ss_pred cc
Confidence 53
No 7
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.55 E-value=1.1e-13 Score=114.60 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=85.9
Q ss_pred CcccccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCC---CcEEEEEe
Q 030736 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG---IEKLIMMD 122 (172)
Q Consensus 46 ~~~~iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~---~~~v~~vD 122 (172)
+.....++.....++ +....+.++.+.+.+++.+.+.+. ....+|||+|||+|.++..|....+ ...++|+|
T Consensus 45 ~~~~~d~~~~~~ar~--~fl~~g~y~~l~~~i~~~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD 119 (272)
T PRK11088 45 SKDPGDNKEMMQARR--AFLDAGHYQPLRDAVANLLAERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLD 119 (272)
T ss_pred CCCCCcCHHHHHHHH--HHHHCCChHHHHHHHHHHHHHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEEC
Confidence 344567777776643 233457788888888877765442 3457899999999999999876432 13799999
Q ss_pred CCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 123 TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 123 ~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+|++|+..+.+. ...+.++++|.+.+||++++||+|++.++
T Consensus 120 ~s~~~l~~A~~~-------~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 120 ISKVAIKYAAKR-------YPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCHHHHHHHHHh-------CCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 999999999753 23467899999999999999999999764
No 8
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=4.7e-14 Score=112.50 Aligned_cols=103 Identities=24% Similarity=0.230 Sum_probs=81.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhHhhhc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc
Q 030736 62 RAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN 140 (172)
Q Consensus 62 Raa~~~~~~d~l~~eva~~l~~rL~~i~-r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~ 140 (172)
|++..|..+..++.+++..+.+.+.... ....+|||+|||+|.++..+.+.++..+++++|+|++|++.+++..
T Consensus 4 ~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----- 78 (240)
T TIGR02072 4 KAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----- 78 (240)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----
Confidence 4444455566778888888888876542 2346899999999999999988776678999999999999987532
Q ss_pred CCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 141 DNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 141 ~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
. ..+.++++|.+.+|+++++||+|+++..
T Consensus 79 ~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 79 S-ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred C-CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 1 2467789999999999999999999763
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.52 E-value=7.8e-14 Score=95.74 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=55.8
Q ss_pred EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
||+|||+|..+..|.+. +..+|+++|+|++|++.+++.. ....+.++++|.+.+||++++||+|+++.+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRL-----KNEGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHT-----TTSTEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcc-----cccCchheeehHHhCccccccccccccccc
Confidence 89999999999999986 4589999999999999998753 223455899999999999999999999753
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.51 E-value=2.1e-13 Score=109.55 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=80.0
Q ss_pred cccccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCH
Q 030736 47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSY 125 (172)
Q Consensus 47 ~~~iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~ 125 (172)
+..+||+.+..+++............+++++.. .+. + .+..+|||+|||+|.++..+++.. +..+|+++|+|+
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~----~l~-~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMK----RMN-V-QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHH----hcC-C-CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 456777777777654322223344444433332 221 1 345799999999999999998642 446999999999
Q ss_pred HHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 126 DMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 126 ~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+|++.+++... ..+. .+.++++|.+.+|+++++||+|++++
T Consensus 81 ~~~~~a~~~~~---~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 81 NMLSVGRQKVK---DAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred HHHHHHHHHHH---hcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 99999986542 1222 57789999999999999999999865
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=8.1e-13 Score=100.09 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCcHHHHHHh-hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~-~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp--f~~~sfDlVv 166 (172)
...+|||+|||+|.++..|. ..++..+++|+|+|++|++.+++... ..+. .+.++++|.+.++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~---~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAK---ELGLDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHH---HTTSTTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccc---cccccccceEEeehhccccccC-CCeeEEE
Confidence 35789999999999999999 44556799999999999999987542 2333 5899999999988 76 8999999
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
++.
T Consensus 79 ~~~ 81 (152)
T PF13847_consen 79 SNG 81 (152)
T ss_dssp EES
T ss_pred EcC
Confidence 975
No 12
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=2.2e-13 Score=96.51 Aligned_cols=72 Identities=29% Similarity=0.300 Sum_probs=57.3
Q ss_pred EEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 95 ALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~---~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
|||+|||+|..+..+.+.. +..+++++|+|++||+.+++... ..++++.++++|.+++|+.+++||+|++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~---~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS---EDGPKVRFVQADARDLPFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH---HTTTTSEEEESCTTCHHHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch---hcCCceEEEECCHhHCcccCCCeeEEEEcC
Confidence 7999999999999998753 23699999999999999987542 244578899999999999999999999953
No 13
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.43 E-value=1.6e-12 Score=104.03 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+..+|||+|||+|.++..|.+..+..+++|+|+|++|++.+++.. ..+.++++|+.. |+++++||+|+++.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 456899999999999999987544568999999999999997531 235667888887 999999999998753
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=3.7e-13 Score=110.29 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=64.5
Q ss_pred HHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030736 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (172)
Q Consensus 76 eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L 155 (172)
.....+++.+.. .+..+|||||||+|.++..|.+..+..+|+|+|+|+.|++.+++. .+.++++|.+.+
T Consensus 16 ~~~~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~ 84 (255)
T PRK14103 16 RPFYDLLARVGA--ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDW 84 (255)
T ss_pred CHHHHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhC
Confidence 334455554432 345799999999999999998865557999999999999999641 256789999888
Q ss_pred CCCCCccceEEEccC
Q 030736 156 PLKERFGDQLLGASL 170 (172)
Q Consensus 156 pf~~~sfDlVvS~~~ 170 (172)
+ ++++||+|+|+.+
T Consensus 85 ~-~~~~fD~v~~~~~ 98 (255)
T PRK14103 85 K-PKPDTDVVVSNAA 98 (255)
T ss_pred C-CCCCceEEEEehh
Confidence 5 5689999999863
No 15
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.42 E-value=4.2e-13 Score=108.24 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV 149 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~ 149 (172)
.-+++.+++++-++-|..-.....-|||||||+|..+..|...+ ..++|+|+|+.||+.|.+. .++..++.
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~-------e~egdlil 99 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER-------ELEGDLIL 99 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh-------hhhcCeee
Confidence 45677788888877665433334579999999999999998755 6899999999999999752 23345677
Q ss_pred ccC-CCCCCCCCccceEEEccC
Q 030736 150 GDE-EFLPLKERFGDQLLGASL 170 (172)
Q Consensus 150 ~D~-e~Lpf~~~sfDlVvS~~~ 170 (172)
+|+ +-+||++++||-|||..+
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred eecCCCCCCCCCccceEEEeee
Confidence 775 789999999999999653
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.39 E-value=2.1e-12 Score=92.09 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=59.9
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC-CCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~-e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||||||+|.++..+++..+..+|+++|+|++|++.+++.... ......+.++++|. ....+ .+.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 4789999999999999999844567999999999999999876521 12334788899998 44444 35699999976
No 17
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=4.1e-12 Score=104.40 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC------CcEEEEEeCCHHHHHHHHHhhhhhcc--CCCceeEEEccCCCCCCCCCcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGG------IEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEEFLPLKERFG 162 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~------~~~v~~vD~S~~mL~~a~~~~~~~~~--~~~~~~~~~~D~e~Lpf~~~sf 162 (172)
...++||++||||.++-.+.+.-+ ..+|+.+|++++||+.++++... .. ....+.|+++|+|.|||++++|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccCCCCCCcc
Confidence 348999999999999988865322 27899999999999999876421 01 1113788999999999999999
Q ss_pred ceEEEcc
Q 030736 163 DQLLGAS 169 (172)
Q Consensus 163 DlVvS~~ 169 (172)
|..++.+
T Consensus 179 D~yTiaf 185 (296)
T KOG1540|consen 179 DAYTIAF 185 (296)
T ss_pred eeEEEec
Confidence 9998764
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.38 E-value=5.6e-12 Score=107.89 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=63.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
.+..+|||||||+|.++..|++.. ..+|+|+|+|+.|++.+++.... ......+.++++|.+.+||++++||+|+|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAA-QGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345789999999999999998754 36999999999999999865421 0111258889999999999999999999975
Q ss_pred C
Q 030736 170 L 170 (172)
Q Consensus 170 ~ 170 (172)
+
T Consensus 195 ~ 195 (340)
T PLN02244 195 S 195 (340)
T ss_pred c
Confidence 4
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=6e-12 Score=103.23 Aligned_cols=112 Identities=19% Similarity=0.160 Sum_probs=77.4
Q ss_pred cccCHHHHHHHHHHHHhhcCC-ChHHHHHHH-HHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHH
Q 030736 49 SIFDRHLKRKQRDRAAWLTRP-NDSFVDAVA-ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD 126 (172)
Q Consensus 49 ~iFDr~~k~~qr~Raa~~~~~-~d~l~~eva-~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~ 126 (172)
..||..+.+..+. . |+. -..++..+. ..+.+.+..+.....+|||+|||+|.++..|++.+ .+|+++|+|++
T Consensus 4 ~~fd~~a~~f~~~--~--y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~ 77 (255)
T PRK11036 4 RNFDDIAEKFSRN--I--YGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAE 77 (255)
T ss_pred CChhhHHHHHHHh--c--cCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHH
Confidence 4588877665443 2 333 233333332 23333344444455799999999999999999854 68999999999
Q ss_pred HHHHHHHhhhhhccCC--CceeEEEccCCCCC-CCCCccceEEEcc
Q 030736 127 MLKLCKDAQQDAHNDN--IETCFVVGDEEFLP-LKERFGDQLLGAS 169 (172)
Q Consensus 127 mL~~a~~~~~~~~~~~--~~~~~~~~D~e~Lp-f~~~sfDlVvS~~ 169 (172)
|++.+++... ..+ ..+.++++|.+.++ +++++||+|++..
T Consensus 78 ~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 78 MIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred HHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 9999986542 222 24678899988774 6778999999864
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=3.9e-12 Score=104.00 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC
Q 030736 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (172)
Q Consensus 73 l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~ 152 (172)
.+...+..+++.+.. .+..+|||||||+|.++..|+...+..+|+|+|+|+.|++.+++.. ..+.++.+|.
T Consensus 15 ~~~~~~~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~ 85 (258)
T PRK01683 15 ERTRPARDLLARVPL--ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADI 85 (258)
T ss_pred HhhcHHHHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECch
Confidence 334455555554432 3457899999999999999987655679999999999999997532 2467788998
Q ss_pred CCCCCCCCccceEEEccC
Q 030736 153 EFLPLKERFGDQLLGASL 170 (172)
Q Consensus 153 e~Lpf~~~sfDlVvS~~~ 170 (172)
+.++ ++++||+|+|+.+
T Consensus 86 ~~~~-~~~~fD~v~~~~~ 102 (258)
T PRK01683 86 ASWQ-PPQALDLIFANAS 102 (258)
T ss_pred hccC-CCCCccEEEEccC
Confidence 8775 4569999999864
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=1.9e-11 Score=100.03 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhh--cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030736 68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145 (172)
Q Consensus 68 ~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~--~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~ 145 (172)
..++.++..++..+ .+. ..+..+|||||||+|.++..|.+ ..+..+++++|+|++|++.++++... ......+
T Consensus 37 p~y~~~~~~~~~~~-~~~---~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v 111 (247)
T PRK15451 37 PGYSNIISMIGMLA-ERF---VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPV 111 (247)
T ss_pred CChHHHHHHHHHHH-HHh---CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCe
Confidence 34555554444322 222 23557899999999999888876 23457999999999999999875421 0112257
Q ss_pred eEEEccCCCCCCCCCccceEEEccC
Q 030736 146 CFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 146 ~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
.++++|.+.+|++ .+|+|+++++
T Consensus 112 ~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 112 DVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred EEEeCChhhCCCC--CCCEEehhhH
Confidence 7899999999875 4899998753
No 22
>PRK06202 hypothetical protein; Provisional
Probab=99.33 E-value=1.6e-11 Score=99.20 Aligned_cols=76 Identities=12% Similarity=-0.002 Sum_probs=59.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQL 165 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlV 165 (172)
.+..+|||||||+|.++..|.+ .+...+|+|+|+|++|++.++++. ....+.+.+++.+.+++++++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-----~~~~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-----RRPGVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-----ccCCCeEEEEecccccccCCCccEE
Confidence 3457899999999999888864 233358999999999999997642 1223556777888888888999999
Q ss_pred EEccC
Q 030736 166 LGASL 170 (172)
Q Consensus 166 vS~~~ 170 (172)
+|+.+
T Consensus 134 ~~~~~ 138 (232)
T PRK06202 134 TSNHF 138 (232)
T ss_pred EECCe
Confidence 99863
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.33 E-value=3.8e-11 Score=102.34 Aligned_cols=75 Identities=12% Similarity=-0.021 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||||||+|.++..|+.. ..+|+|+|+|++|++.++++... ......+.++++|++.+|+++++||+|+|..
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 358999999999999999874 36899999999999999864311 0111257889999999999889999999864
No 24
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=2.4e-11 Score=96.12 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++.... .+. ++.++.+|.+.++. +++||+|+|+.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~---~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE---LGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH---cCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 35789999999999999888655567999999999999999865432 223 48889999998887 78999999964
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=1.9e-11 Score=97.01 Aligned_cols=73 Identities=16% Similarity=0.066 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEccC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
..+|||+|||+|.++..|++.+ .+|+++|+|++|++.+++... ..+. .+.+.++|.+.++++ ++||+|+|+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~---~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKA---AENLDNLHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---HcCCCcceEEecChhhCCcC-CCcCEEEEecc
Confidence 4789999999999999999854 699999999999999986542 2222 367788998888874 67999999864
No 26
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=1.2e-11 Score=98.53 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccC-CCCC--CCCCccceE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDE-EFLP--LKERFGDQL 165 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~-e~Lp--f~~~sfDlV 165 (172)
.+..+|||+|||+|.++..|+...+..+|+++|+|++|++.+++.... .+ ..+.++++|+ +.++ +++++||+|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~---~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE---EGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH---cCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 356789999999999999998765556899999999999999865421 22 2578899998 8887 888999999
Q ss_pred EEccCC
Q 030736 166 LGASLD 171 (172)
Q Consensus 166 vS~~~~ 171 (172)
++++.+
T Consensus 116 ~~~~~~ 121 (202)
T PRK00121 116 YLNFPD 121 (202)
T ss_pred EEECCC
Confidence 998653
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.26 E-value=5.4e-11 Score=95.25 Aligned_cols=71 Identities=20% Similarity=0.106 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..++..+ .+|+|+|+|++|+..++++.. ... ..+.+.++|.+.++ ++||+|+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~---~~~~~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQ---GRDVAGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence 45789999999999999998743 589999999999999986542 122 25788999988876 789999986
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 127 ~ 127 (219)
T TIGR02021 127 D 127 (219)
T ss_pred h
Confidence 3
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.25 E-value=1.1e-10 Score=91.72 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||+|||+|.++..++..++..+|+++|.|++|++.+++... ..+. ++.++.+|.+.++. +++||+|+|+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~---~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKA---ELGLNNVEIVNGRAEDFQH-EEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH---HhCCCCeEEEecchhhccc-cCCccEEEehh
Confidence 578999999999999988765555789999999999998876432 2233 47889999998754 57999999974
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=3.3e-11 Score=103.37 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=61.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
.+..+|||||||+|.++..+.+..+..+|+++|+|++|++.++++. ....+.++.+|.+.+|+++++||+|+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----~~~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----hccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 4567999999999999988876444468999999999999998642 11246679999999999999999999975
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.25 E-value=8.8e-11 Score=95.26 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=60.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
.+..+|||+|||+|.++..+.+.. +..+++|+|+|++|++.++++... ......+.++++|.+.+|++ .+|+|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 355789999999999998887642 356899999999999999865421 11123577899999999885 4899998
Q ss_pred ccC
Q 030736 168 ASL 170 (172)
Q Consensus 168 ~~~ 170 (172)
+++
T Consensus 129 ~~~ 131 (239)
T TIGR00740 129 NFT 131 (239)
T ss_pred ecc
Confidence 764
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.25 E-value=3.2e-11 Score=95.52 Aligned_cols=72 Identities=15% Similarity=0.006 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||+|||+|.++..|++++ .+|+++|+|+.|++.+++... ..++.+...++|...++++ ++||+|+|++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKA---RENLPLRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH---HhCCCceeEeccchhcccc-CCCCEEEEec
Confidence 4789999999999999999854 689999999999999876542 2334566677887777775 6899999875
No 32
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.24 E-value=5.3e-11 Score=98.47 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+..+|||||||+|..+..|+... ..+|+++|+|++|++.+++... ....+.++++|...+|+++++||+|++.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~----~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS----DKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC----cCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 355799999999999999887643 3589999999999999986431 1235778899999999999999999985
No 33
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.24 E-value=7.4e-12 Score=102.05 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||.|.++..+++.| +.|+|+|+|+++++.|+.++. ..++.+.+.....|.+-...++||+|+|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~---e~gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHAL---ESGVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhh---hccccccchhhhHHHHHhcCCCccEEEEh
Confidence 45789999999999999999976 899999999999999986542 34556778888889888777899999985
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.24 E-value=6.6e-12 Score=101.13 Aligned_cols=82 Identities=22% Similarity=0.144 Sum_probs=66.1
Q ss_pred HHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030736 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL 157 (172)
Q Consensus 78 a~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf 157 (172)
+.+|..++.. .....|.|||||+|+.+..|.++.+...|+|+|.|++||+.|++ ..++..|..+|...+--
T Consensus 19 a~dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-------rlp~~~f~~aDl~~w~p 89 (257)
T COG4106 19 ARDLLARVPL--ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-------RLPDATFEEADLRTWKP 89 (257)
T ss_pred HHHHHhhCCc--cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-------hCCCCceecccHhhcCC
Confidence 3444444432 23468999999999999999999999999999999999999975 44578889999988753
Q ss_pred CCCccceEEEcc
Q 030736 158 KERFGDQLLGAS 169 (172)
Q Consensus 158 ~~~sfDlVvS~~ 169 (172)
+..+|++++|-
T Consensus 90 -~~~~dllfaNA 100 (257)
T COG4106 90 -EQPTDLLFANA 100 (257)
T ss_pred -CCccchhhhhh
Confidence 46899999885
No 35
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=1e-10 Score=90.40 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+..+|||+|||+|.++..+..+ ..+++++|+++.|++.+++... ...++.++.+|+..+++++.+||.|++|.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~----~~~~v~ii~~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA----AADNLTVIHGDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc----cCCCEEEEECchhcCCccccCCCEEEECC
Confidence 3468999999999999999985 3799999999999999976431 12257789999999999887899999985
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.20 E-value=8.1e-11 Score=97.10 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=61.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
++..+|||+|||+|..+..++.. +...+|+++|+|++|++.+++... ..+. .+.++.+|.+.+|+++++||+|++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~---~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH---HcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 35679999999999877666543 334589999999999999986532 1222 577889999999999999999999
Q ss_pred ccC
Q 030736 168 ASL 170 (172)
Q Consensus 168 ~~~ 170 (172)
+++
T Consensus 153 ~~v 155 (272)
T PRK11873 153 NCV 155 (272)
T ss_pred cCc
Confidence 864
No 37
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.19 E-value=1.9e-10 Score=97.82 Aligned_cols=74 Identities=18% Similarity=0.039 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
+..+|||+|||+|.++..|.+.+ .+|+++|+|++|++.++++..... .....+.|.++|.+.+ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 34689999999999999999854 689999999999999987542100 0123467788887654 578999998
Q ss_pred cc
Q 030736 168 AS 169 (172)
Q Consensus 168 ~~ 169 (172)
+.
T Consensus 219 ~~ 220 (315)
T PLN02585 219 LD 220 (315)
T ss_pred cC
Confidence 64
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=1.4e-10 Score=102.79 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC
Q 030736 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (172)
Q Consensus 79 ~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~ 158 (172)
+.+++.+. + .+..+|||||||+|.++..|+... ..+|+|+|+|++|+..+++... .....+.++++|...+|++
T Consensus 256 e~l~~~~~-~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~---~~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLD-L-KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI---GRKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcC-C-CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh---cCCCceEEEEcCcccCCCC
Confidence 34444443 2 345789999999999999888743 3589999999999999976431 2223578899999999999
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
+++||+|+|..
T Consensus 330 ~~~fD~I~s~~ 340 (475)
T PLN02336 330 DNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEECC
Confidence 89999999964
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.17 E-value=5e-10 Score=80.63 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=63.5
Q ss_pred HHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030736 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (172)
Q Consensus 76 eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (172)
++...+.+.+. + .+..+|||+|||+|.++..+++..+..+|+++|+|+.|++.+++.... .+. .+.++.+|.+.
T Consensus 6 ~~~~~~~~~~~-~-~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 6 EVRALTLSKLR-L-RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR---FGVSNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHHHcC-C-CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH---hCCCceEEEeccccc
Confidence 34444444432 2 234689999999999999998765457899999999999999764321 122 46677788664
Q ss_pred -CCCCCCccceEEEccC
Q 030736 155 -LPLKERFGDQLLGASL 170 (172)
Q Consensus 155 -Lpf~~~sfDlVvS~~~ 170 (172)
++...++||.|++...
T Consensus 81 ~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGS 97 (124)
T ss_pred cChhhcCCCCEEEECCc
Confidence 4444578999998753
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=1.5e-10 Score=98.57 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||||||+|.++..+++.+ ...|+|+|+|+.|+.++...... ......+.++.+|.+.+|+ +++||+|+|..
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~ 197 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG 197 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEECC
Confidence 4789999999999999998765 34799999999999875432110 0112357889999999999 78999999964
No 41
>PRK06922 hypothetical protein; Provisional
Probab=99.17 E-value=1e-10 Score=107.17 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..|+...+..+++|+|+|+.|++.+++... ..+..+.++++|...+| |++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~---~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ---NEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh---hcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 3579999999999999999876666799999999999999976431 22335667889998888 889999999987
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 495 ~ 495 (677)
T PRK06922 495 S 495 (677)
T ss_pred h
Confidence 4
No 42
>PRK08317 hypothetical protein; Provisional
Probab=99.17 E-value=3.8e-10 Score=89.66 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+..+|||+|||+|.++..++... +..+++++|+|+.+++.+++... .....+.++.+|.+.+|+++++||+|+++.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCCCCCceEEEEec
Confidence 45789999999999999998754 45699999999999999986421 123357788999999999999999999864
No 43
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.16 E-value=6.1e-10 Score=86.32 Aligned_cols=74 Identities=23% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~-~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+|||+|||+|.++..++..++..+|+++|+++.+++.++.... ..++. +.++..|.-. ++++++||+|+||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~---~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAE---RNGLENVEVVQSDLFE-ALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHH---HTTCTTEEEEESSTTT-TCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH---hcCccccccccccccc-cccccceeEEEEc
Confidence 4578999999999999999987766679999999999999986543 23333 7777777533 3347899999997
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.16 E-value=3.7e-10 Score=90.31 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..|++.+ .+|+++|+|++|++.+++... ..+. .+.+.++| ++..+++||+|+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~---~~~~~~~i~~~~~d---~~~~~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP---EAGLAGNITFEVGD---LESLLGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH---hcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence 45789999999999999998754 579999999999999986542 1222 46777887 44456899999986
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 135 ~ 135 (230)
T PRK07580 135 D 135 (230)
T ss_pred c
Confidence 4
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.16 E-value=1.5e-10 Score=96.83 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
..+|||+|||+|.++..|+..+ .+|+++|+|+.|++.+++... ..++.+.+.+.|.+..++ +++||+|+|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~---~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE---KENLNIRTGLYDINSASI-QEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---HcCCceEEEEechhcccc-cCCccEEEEcch
Confidence 3589999999999999998854 699999999999999876542 234467778888887776 689999999864
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.16 E-value=6.3e-10 Score=88.85 Aligned_cols=78 Identities=23% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+..+|||+|||+|.++..++..++ ..+++++|+|+.|++.+++.... ......+.++.+|.+.+++++++||+|+++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEEec
Confidence 457999999999999999987654 47999999999999999865321 0012357788899999998889999999864
No 47
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.15 E-value=3.1e-12 Score=103.86 Aligned_cols=107 Identities=22% Similarity=0.253 Sum_probs=71.4
Q ss_pred CcccccCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhhhc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030736 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 46 ~~~~iFDr~~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~i~-r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+...||..+-+..- .. .+.|.-.|.+.+.++|.... .+|.++||||||||..+..|.. ...+++|+|+|
T Consensus 86 YVe~LFD~~Ae~Fd~--~L-----VdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~--~a~~ltGvDiS 156 (287)
T COG4976 86 YVETLFDQYAERFDH--IL-----VDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD--MADRLTGVDIS 156 (287)
T ss_pred HHHHHHHHHHHHHHH--HH-----HHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHH--HHhhccCCchh
Confidence 355789887744432 11 22222234444445554442 3489999999999999999987 45799999999
Q ss_pred HHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEEc
Q 030736 125 YDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERFGDQLLGA 168 (172)
Q Consensus 125 ~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~Lp-f~~~sfDlVvS~ 168 (172)
++||+.|.++ +.--...+++.. .++ ..++.||+|++.
T Consensus 157 ~nMl~kA~eK-------g~YD~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 157 ENMLAKAHEK-------GLYDTLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred HHHHHHHHhc-------cchHHHHHHHHHHHhhhccCCcccchhhh
Confidence 9999999863 332223455554 444 567889999863
No 48
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=5.5e-10 Score=89.65 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=62.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
.+..+|||+|||+|+++..+++.. ..++|+++|++++|++.+++... ..+. ++.++++|....+.+.+.||+|++
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~---~~g~~~v~~~~gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK---KLGYDNVEVIVGDGTLGYEENAPYDRIYV 151 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCeEEEECCcccCCCcCCCcCEEEE
Confidence 356899999999999998887642 34699999999999999987543 2233 578899998877767789999998
Q ss_pred ccC
Q 030736 168 ASL 170 (172)
Q Consensus 168 ~~~ 170 (172)
..+
T Consensus 152 ~~~ 154 (212)
T PRK13942 152 TAA 154 (212)
T ss_pred CCC
Confidence 753
No 49
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.14 E-value=6e-10 Score=88.07 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=61.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~-~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+..+|||+|||+|.++..+.+..+. .+++++|+++.+++.+++.. .....+.++.+|...+|+++++||+|++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKS----ELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHh----ccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 4579999999999999999876543 58999999999999997642 112246778899999999888999999864
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.13 E-value=1.2e-10 Score=92.00 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp---f~~~sfDlVv 166 (172)
....+||||||+|.++..++...+..+|+|+|+|+.|++.+..... ..++ ++.++++|+..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~---~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN---KLGLKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH---HhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 4468999999999999999987777799999999999999876542 1222 5788999987654 5567999999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
+++.|
T Consensus 93 ~~~pd 97 (194)
T TIGR00091 93 LNFPD 97 (194)
T ss_pred EECCC
Confidence 98765
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=7.5e-10 Score=88.32 Aligned_cols=78 Identities=9% Similarity=-0.081 Sum_probs=60.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLL 166 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVv 166 (172)
.+..+|||+|||+|.++..+++.. ..++|+++|++++|++.+++... ..+. .+.++.+|....+.++.+||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~---~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE---RLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 345799999999999998887642 24689999999999999976542 1222 36788899877655567999999
Q ss_pred EccC
Q 030736 167 GASL 170 (172)
Q Consensus 167 S~~~ 170 (172)
++.+
T Consensus 148 ~~~~ 151 (205)
T PRK13944 148 VTAA 151 (205)
T ss_pred EccC
Confidence 8754
No 52
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.12 E-value=2.8e-10 Score=89.63 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-C-CCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-L-pf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..+.+.. ...++++|+|++|+..+++ .+ +.++++|.+. + ++++++||+|+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------RG--VNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------cC--CeEEEEEhhhcccccCCCCcCEEEEh
Confidence 45789999999999999987643 3478999999999999863 12 4567888765 5 4788999999998
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 83 ~ 83 (194)
T TIGR02081 83 Q 83 (194)
T ss_pred h
Confidence 5
No 53
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.12 E-value=4.2e-10 Score=98.72 Aligned_cols=75 Identities=15% Similarity=-0.031 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf-~~~sfDlVvS~~ 169 (172)
..+|||+|||+|.++..++...+..+|+++|+|++|++.+++... ..+..+.++.+|.....+ .+++||+|+||-
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~---~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA---DLGARVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEcchhccccccCCCccEEEECC
Confidence 468999999999999988865556799999999999999987542 233467888999754433 246899999974
No 54
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.11 E-value=2e-10 Score=95.43 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=69.7
Q ss_pred cCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030736 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (172)
++++=.....+++.+++.+.. .+..+|||+|||+|.++..|++.+ .+|+++|+|++|++.+++.. ....+.
T Consensus 20 ~gq~fl~~~~i~~~i~~~l~~--~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~-----~~~~v~ 90 (272)
T PRK00274 20 LGQNFLIDENILDKIVDAAGP--QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETF-----AEDNLT 90 (272)
T ss_pred cCcCcCCCHHHHHHHHHhcCC--CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhh-----ccCceE
Confidence 455323334566666665432 345789999999999999999865 48999999999999997632 113577
Q ss_pred EEEccCCCCCCCCCccceEEEcc
Q 030736 147 FVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 147 ~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
++++|...+++++-.+|.|++|.
T Consensus 91 ~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 91 IIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred EEEChhhcCCHHHcCcceEEEeC
Confidence 89999999988653369999985
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.11 E-value=3.7e-10 Score=87.82 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||+|||+|.++..+...+ .+|+++|+|++|++.+++... ..+..+.++.+|....+ +++||+|+++.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~ 90 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAK---LNNVGLDVVMTDLFKGV--RGKFDVILFNP 90 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH---HcCCceEEEEccccccc--CCcccEEEECC
Confidence 4689999999999999999865 389999999999999986542 22345677888876544 45999999984
No 56
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.11 E-value=2.8e-10 Score=85.37 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=53.7
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+..+|||||||+|.++..+.+.+ .+++++|+|+.|++.. .......+.+..++++++||+|+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~~------------~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEKR------------NVVFDNFDAQDPPFPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHHT------------TSEEEEEECHTHHCHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhhh------------hhhhhhhhhhhhhccccchhhHhhH
Confidence 3566899999999999999998754 4999999999999981 1233444455666788999999998
Q ss_pred cC
Q 030736 169 SL 170 (172)
Q Consensus 169 ~~ 170 (172)
.+
T Consensus 86 ~~ 87 (161)
T PF13489_consen 86 DV 87 (161)
T ss_dssp SS
T ss_pred HH
Confidence 54
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.10 E-value=1.9e-11 Score=85.86 Aligned_cols=73 Identities=16% Similarity=-0.015 Sum_probs=42.3
Q ss_pred EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEccC
Q 030736 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERFGDQLLGASL 170 (172)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~~~sfDlVvS~~~ 170 (172)
||+|||+|.++..+.+..+..+++++|+|+.|++.++++... ........+..+..... ...++||+|+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE--LGNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH--CT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh--cCCcceeEEEeecCChhhcccccccceehhhhh
Confidence 799999999999998876678999999999999777654321 11112333343333221 12269999999754
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.09 E-value=1.3e-09 Score=87.24 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=64.1
Q ss_pred HHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030736 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL 155 (172)
Q Consensus 78 a~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L 155 (172)
...+.+.+. + .+..+|||+|||+|.++..|++... .++|+++|++++|++.+++... ..+. ++.++++|....
T Consensus 66 ~~~~~~~l~-~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~---~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 66 VAMMTELLE-L-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR---KLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHhC-C-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HCCCCCeEEEECCcccC
Confidence 334444443 2 3567999999999999999987532 3569999999999999986542 2233 577889998766
Q ss_pred CCCCCccceEEEcc
Q 030736 156 PLKERFGDQLLGAS 169 (172)
Q Consensus 156 pf~~~sfDlVvS~~ 169 (172)
+...+.||+|+++.
T Consensus 141 ~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 141 WEPLAPYDRIYVTA 154 (215)
T ss_pred CcccCCCCEEEEcC
Confidence 55567899999865
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.09 E-value=1.5e-09 Score=84.93 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030736 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF 147 (172)
Q Consensus 69 ~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~ 147 (172)
...+..+++...+.+.+. + .+..+|||+|||+|.++..++..++..+|+++|+|+.|++.+++... ..+. .+.+
T Consensus 11 ~~~~~~~~~r~~~~~~l~-~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~---~~~~~~i~~ 85 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE-L-HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ---RFGCGNIDI 85 (187)
T ss_pred CCCCchHHHHHHHHHhcC-C-CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCeEE
Confidence 455666677666655553 2 24578999999999999999876656799999999999999976432 1122 4667
Q ss_pred EEccCCCCCCCCCccceEEEccC
Q 030736 148 VVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 148 ~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+.+|.+ .++ +++||+|++...
T Consensus 86 ~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 86 IPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred EecCch-hhc-CcCCCEEEECCC
Confidence 778764 344 368999998653
No 60
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.08 E-value=2e-10 Score=94.74 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=54.2
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC------ceeEEEccCCCCCCCCCccceEE
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI------ETCFVVGDEEFLPLKERFGDQLL 166 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~------~~~~~~~D~e~Lpf~~~sfDlVv 166 (172)
.+|||+|||+|.++..|++.+ +.|+|+|+|+.|++.|+++..- .+.. .+.+.+.|.|.+- +.||.|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~--dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM--DPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc--Cchhccccceeeehhhcchhhcc---cccceee
Confidence 679999999999999999965 8999999999999999876321 1111 2445667777664 3499999
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
|+.
T Consensus 164 cse 166 (282)
T KOG1270|consen 164 CSE 166 (282)
T ss_pred eHH
Confidence 975
No 61
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.07 E-value=7.3e-10 Score=91.42 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030736 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (172)
Q Consensus 74 ~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e 153 (172)
-..+++.+++.+.. .+..+|||+|||+|.++..|.+.+ .+|+++|+++.|++.+++... ....+.++++|..
T Consensus 14 d~~~~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~----~~~~v~ii~~D~~ 85 (258)
T PRK14896 14 DDRVVDRIVEYAED--TDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEI----AAGNVEIIEGDAL 85 (258)
T ss_pred CHHHHHHHHHhcCC--CCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhc----cCCCEEEEEeccc
Confidence 34466666665432 245789999999999999999853 689999999999999986431 1235778999999
Q ss_pred CCCCCCCccceEEEcc
Q 030736 154 FLPLKERFGDQLLGAS 169 (172)
Q Consensus 154 ~Lpf~~~sfDlVvS~~ 169 (172)
.++++ .||.|++|+
T Consensus 86 ~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 86 KVDLP--EFNKVVSNL 99 (258)
T ss_pred cCCch--hceEEEEcC
Confidence 98875 489999985
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.05 E-value=1.5e-09 Score=87.68 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+|||+|||+|.++..++...+..+++++|+|+.|++.++.... ..+. .+.++.+|... ++++++||+|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA---RLGLDNVTFLQSDWFE-PLPGGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEECchhc-cCcCCceeEEEEC
Confidence 4468999999999999999876555699999999999999986542 2233 47778888765 5667899999996
No 63
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.05 E-value=1.2e-09 Score=90.67 Aligned_cols=78 Identities=12% Similarity=-0.043 Sum_probs=56.9
Q ss_pred CCeEEEEcCCCcH----HHHHHhhcCC-----CcEEEEEeCCHHHHHHHHHhhhhh---cc-------------------
Q 030736 92 FPTALCLGGSLEA----VRRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQDA---HN------------------- 140 (172)
Q Consensus 92 ~~~vLDlGcGtG~----l~~~L~~~~~-----~~~v~~vD~S~~mL~~a~~~~~~~---~~------------------- 140 (172)
..+|+|+|||||. ++..|.+.++ ..+|+|+|+|+.||+.|++..... ..
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3689999999996 5555554322 358999999999999998643210 00
Q ss_pred -CC--CceeEEEccCCCCCCCCCccceEEEcc
Q 030736 141 -DN--IETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 141 -~~--~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+. -.+.|.++|....|+++++||+|+|..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn 211 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRN 211 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence 00 147788999999888889999999964
No 64
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.04 E-value=1.6e-09 Score=92.14 Aligned_cols=77 Identities=14% Similarity=0.034 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+..+|||+|||+|.++..+...+ ...|+|+|+|+.|+.+++..... ......+.+..++.+.+|.. ++||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 34789999999999988887654 35799999999999876432110 01123466677889999875 58999999753
No 65
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.03 E-value=8.8e-10 Score=97.72 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~Lpf~~~sfDlVvS~ 168 (172)
+..+|||||||+|.++..|++. ..+|+++|+|++|++.+.+.. .....+.++++|++ .+|+++++||+|+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN----GHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh----ccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 3468999999999999999985 368999999999999876421 12235778888885 578888999999997
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 111 ~ 111 (475)
T PLN02336 111 W 111 (475)
T ss_pred h
Confidence 5
No 66
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=2e-09 Score=89.87 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=57.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+|||+|||+|.++..++...+..+|+++|+|+++++.+++... ..+. .+.++.+|... ++++++||+|+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~---~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE---KNQLEHRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhc-cCcCCCccEEEEC
Confidence 58999999999999999976655699999999999999986542 2223 37788888654 4555589999997
No 67
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.02 E-value=2.4e-09 Score=89.64 Aligned_cols=74 Identities=14% Similarity=0.015 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..++...+..+|+++|+|+.|++.+++... ..++ .+.++.+|... ++++++||+|+||
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~---~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE---RHGLEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 3468999999999999999976555699999999999999987542 2222 47788888632 3445689999997
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.01 E-value=1.8e-09 Score=85.85 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..++||||||.|..+..|+.+| -.|+++|.|+..++...+.+. ..++++...+.|.+...++ +.||+|+|..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~---~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~ 102 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAE---EEGLDIRTRVADLNDFDFP-EEYDFIVSTV 102 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHH---HTT-TEEEEE-BGCCBS-T-TTEEEEEEES
T ss_pred CCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHh---hcCceeEEEEecchhcccc-CCcCEEEEEE
Confidence 4799999999999999999966 689999999999998876542 3566788889999988885 6899999853
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.00 E-value=1.9e-09 Score=93.79 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=56.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+|||||||+|.++..++.+++..+|+++|.|+.|++.+++......... ..+.++.+|... .+++++||+|+||
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEEC
Confidence 58999999999999999887777799999999999999986542111111 145667777532 2345689999997
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=3e-09 Score=90.07 Aligned_cols=72 Identities=14% Similarity=0.011 Sum_probs=57.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+|||+|||+|.++..++...+..+|+++|+|+.+++.+++... ..+. .+.++++|... ++++++||+|+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~---~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE---RHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 68999999999999999876656799999999999999986542 2222 47788898643 2345689999997
No 71
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.99 E-value=2.4e-09 Score=85.59 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=57.2
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+|||+|||+|.++..+++..+..+++++|+|++|++.+++.... ......+.++.+|.+..|++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~-~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA-LGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-cCCCcceEEEecccccCCCC-CCCCEeehHH
Confidence 69999999999999998765446899999999999999865321 01112467788888777775 5899999853
No 72
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=86.88 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=59.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee-EEEccCCCCC-CCCCccceEEEcc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC-FVVGDEEFLP-LKERFGDQLLGAS 169 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~-~~~~D~e~Lp-f~~~sfDlVvS~~ 169 (172)
..|||+|||||..-..+.- .++..||++|+++.|-+.+...... .....+. |++++.|+|| +++.|+|.||+.+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E--~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAE--KKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhh--ccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4579999999988777653 2567999999999999998755421 2334555 8999999999 8999999999875
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.97 E-value=4.2e-09 Score=88.21 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=54.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
.+..+|||+|||+|.++..++..+ ..+|+++|+|+.|++.+++... ..++ .+....++ ..++.+++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~---~n~~~~~~~~~~~~--~~~~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAE---LNQVSDRLQVKLIY--LEQPIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HcCCCcceEEEecc--cccccCCCceEEEE
Confidence 455899999999999998887654 4689999999999999986542 1222 23334444 23445679999999
Q ss_pred ccC
Q 030736 168 ASL 170 (172)
Q Consensus 168 ~~~ 170 (172)
+..
T Consensus 232 n~~ 234 (288)
T TIGR00406 232 NIL 234 (288)
T ss_pred ecC
Confidence 863
No 74
>PRK14967 putative methyltransferase; Provisional
Probab=98.97 E-value=2.3e-09 Score=86.32 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..++..+ ..+++++|+|+.|++.+++... ..+..+.++.+|... ++++++||+|+++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~---~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 108 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNAL---LAGVDVDVRRGDWAR-AVEFRPFDVVVSN 108 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence 45789999999999999988753 3589999999999999876432 223356677788755 3567899999997
No 75
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.97 E-value=7e-09 Score=82.62 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=54.1
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+.+.++||+|||.|.++..|+++. .+++++|+|+..++++++... ....+.++++|.-.. .+++.||+|+.+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~~-~P~~~FDLIV~S 113 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA----GLPHVEWIQADVPEF-WPEGRFDLIVLS 113 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCCC-CCCCCeeEEEEe
Confidence 3567899999999999999999854 799999999999999997642 224788999987654 467899999975
No 76
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.96 E-value=2.8e-09 Score=87.48 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=68.4
Q ss_pred cCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030736 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (172)
++++=.+...+++.+++.+.. .+..+|||+|||+|.++..|.+++ .+|+++|+++.|++.+++.. .....+.
T Consensus 7 ~gq~fl~d~~i~~~i~~~~~~--~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~----~~~~~v~ 78 (253)
T TIGR00755 7 LGQNFLIDESVIQKIVEAANV--LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLL----SLYERLE 78 (253)
T ss_pred CCCccCCCHHHHHHHHHhcCC--CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHh----CcCCcEE
Confidence 344333334456666654432 245789999999999999999865 57999999999999997542 1123577
Q ss_pred EEEccCCCCCCCCCccc---eEEEccC
Q 030736 147 FVVGDEEFLPLKERFGD---QLLGASL 170 (172)
Q Consensus 147 ~~~~D~e~Lpf~~~sfD---lVvS~~~ 170 (172)
++.+|+..+|++ +|| +|++|+.
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEcCC
Confidence 789999998875 577 9999863
No 77
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.95 E-value=1.4e-09 Score=78.04 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=58.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEcc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERFGDQLLGAS 169 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~~~sfDlVvS~~ 169 (172)
.+|||+|||+|.+...+.+.+ ..+++++|+++..++.++..... ......+.++++|...++ +++++||+|++|-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 479999999999999998866 67999999999999999865432 111125788999987775 7889999999973
No 78
>PRK04266 fibrillarin; Provisional
Probab=98.95 E-value=7.5e-09 Score=84.19 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=56.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCCCCCccceE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKERFGDQL 165 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----Lpf~~~sfDlV 165 (172)
++..+|||+|||+|.++..|++..+.++|+++|+|++|++...+... ...++.++.+|+.. .+++ ++||+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~----~~~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE----ERKNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh----hcCCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 35579999999999999999875434689999999999997654321 11246678888764 2233 569999
Q ss_pred EEccCC
Q 030736 166 LGASLD 171 (172)
Q Consensus 166 vS~~~~ 171 (172)
++.+.+
T Consensus 146 ~~d~~~ 151 (226)
T PRK04266 146 YQDVAQ 151 (226)
T ss_pred EECCCC
Confidence 987754
No 79
>PHA03411 putative methyltransferase; Provisional
Probab=98.94 E-value=5.5e-09 Score=87.27 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..+..+.+..+|+++|+|+.|++.+++.. ..+.++++|...++. +.+||+|+||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEc
Confidence 46899999999999888876433468999999999999997531 246778999887764 4689999996
No 80
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.94 E-value=3.7e-09 Score=90.85 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+|||+|||+|.++..+.+.++..+|+++|+|+.|++.+++... ..++...++.+|... ..++.||+|+||.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~---~n~l~~~~~~~D~~~--~~~~~fDlIvsNP 269 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA---ANGLEGEVFASNVFS--DIKGRFDMIISNP 269 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCEEEEccccc--ccCCCccEEEECC
Confidence 358999999999999999987666689999999999999986442 233444556666543 2357899999984
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.94 E-value=3e-09 Score=92.72 Aligned_cols=78 Identities=8% Similarity=-0.071 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC--CCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL--PLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L--pf~~~sfDlVvS 167 (172)
..+.+||||||+|.++..++...+...++|+|+++.|+..+..... ..++ ++.++.+|+..+ +++++++|.|++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~---~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE---LLNLKNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 3468999999999999999987777899999999999999876543 2333 577889998765 588999999999
Q ss_pred ccCC
Q 030736 168 ASLD 171 (172)
Q Consensus 168 ~~~~ 171 (172)
++.|
T Consensus 199 nFPd 202 (390)
T PRK14121 199 HFPV 202 (390)
T ss_pred eCCC
Confidence 8765
No 82
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=3e-09 Score=84.40 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=57.2
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEE
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERFGDQLL 166 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~Lp-f~~~sfDlVv 166 (172)
-.+..+|||||||.|.+...|.+. +.-...|+|++++.+..+-+ .++. .+++|.+ .|+ |++++||.||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-------rGv~--Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-------RGVS--VIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-------cCCC--EEECCHHHhHhhCCCCCccEEe
Confidence 356789999999999999999874 34589999999999998864 4444 4788865 454 9999999999
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
.+-
T Consensus 81 lsq 83 (193)
T PF07021_consen 81 LSQ 83 (193)
T ss_pred hHh
Confidence 764
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.94 E-value=7.3e-09 Score=87.29 Aligned_cols=69 Identities=22% Similarity=0.123 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCC
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKER 160 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-Lpf~~~ 160 (172)
+..+|||+|||||..+..|.+... ..+|+++|+|++||+.+.++... ..+.+.+.++++|... ++++..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~~p~~~v~~i~gD~~~~~~~~~~ 133 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA-DYPQLEVHGICADFTQPLALPPE 133 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh-hCCCceEEEEEEcccchhhhhcc
Confidence 456899999999999999987543 36899999999999999765421 1234567778999875 455443
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.93 E-value=1.3e-08 Score=81.20 Aligned_cols=88 Identities=13% Similarity=-0.023 Sum_probs=62.4
Q ss_pred HHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030736 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE 153 (172)
Q Consensus 75 ~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e 153 (172)
.++...+.+.+. ..+..+|||+|||+|.++..|+... .+++++|.+++|++.+++... ..+. .+.++.+|..
T Consensus 64 p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~---~~~~~~v~~~~~d~~ 136 (212)
T PRK00312 64 PYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLK---QLGLHNVSVRHGDGW 136 (212)
T ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHH---HCCCCceEEEECCcc
Confidence 344445544332 2355799999999999998887743 589999999999999986542 1233 4777888865
Q ss_pred CCCCCCCccceEEEcc
Q 030736 154 FLPLKERFGDQLLGAS 169 (172)
Q Consensus 154 ~Lpf~~~sfDlVvS~~ 169 (172)
....+.++||+|++..
T Consensus 137 ~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 137 KGWPAYAPFDRILVTA 152 (212)
T ss_pred cCCCcCCCcCEEEEcc
Confidence 4322347899999864
No 85
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.93 E-value=4.5e-09 Score=89.05 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf-~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..|+..+ .+|+|+|.|+.|++.+++... ..++ .+.++++|.+.++. .++.||+|+++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~---~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAA---ELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4789999999999999999843 799999999999999986542 2233 58889999887643 34579999975
No 86
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.92 E-value=6.1e-09 Score=92.05 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC----CCCCCCccceE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF----LPLKERFGDQL 165 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~----Lpf~~~sfDlV 165 (172)
+..+|||+|||+|.++..|+..+ .+|+++|+|++|++.+++... ..++ ++.++.+|.+. +++.+++||+|
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~---~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~V 371 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENAR---RNGLDNVTFYHANLEEDFTDQPWALGGFDKV 371 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEEeChHHhhhhhhhhcCCCCEE
Confidence 45789999999999999999754 799999999999999986542 1223 47889998753 34666789999
Q ss_pred EEc
Q 030736 166 LGA 168 (172)
Q Consensus 166 vS~ 168 (172)
+++
T Consensus 372 i~d 374 (443)
T PRK13168 372 LLD 374 (443)
T ss_pred EEC
Confidence 985
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=1.2e-08 Score=83.85 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..++...+..+++++|+|+.|++.+++.... .....+.++.+|... ++++++||+|+||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--~~~~~i~~~~~d~~~-~~~~~~fD~Iv~n 182 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--GLGARVEFLQGDWFE-PLPGGRFDLIVSN 182 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--CCCCcEEEEEccccC-cCCCCceeEEEEC
Confidence 45789999999999999998766567999999999999999865320 122357778888643 3446799999996
No 88
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.91 E-value=1e-08 Score=89.32 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=56.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
.+..+|||||||+|.++..+++.. ..+|+++|+|++|++.+++.. .+..+.+..+|...+ +++||+|+|..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~-----~~l~v~~~~~D~~~l---~~~fD~Ivs~~ 236 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERC-----AGLPVEIRLQDYRDL---NGQFDRIVSVG 236 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh-----ccCeEEEEECchhhc---CCCCCEEEEeC
Confidence 356799999999999999998753 258999999999999998653 233466777887665 47899999864
No 89
>PHA03412 putative methyltransferase; Provisional
Probab=98.91 E-value=7.7e-09 Score=84.70 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~---~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..+.... +..+|+++|+++.|++.+++.. ..+.++.+|....++ +++||+||||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEEEC
Confidence 4699999999999999887531 2358999999999999998531 236678899887766 5699999997
No 90
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.90 E-value=2.1e-09 Score=86.27 Aligned_cols=68 Identities=15% Similarity=0.005 Sum_probs=53.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER 160 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--------f~~~ 160 (172)
++..+|||||||||.++..+++.. +.++|+++|+++ |.. ...+.++++|.+..+ +.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~------------~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP------------IVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC------------CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 445789999999999999888753 346999999998 311 123678899998864 6788
Q ss_pred ccceEEEccC
Q 030736 161 FGDQLLGASL 170 (172)
Q Consensus 161 sfDlVvS~~~ 170 (172)
+||+|+|+++
T Consensus 117 ~~D~V~S~~~ 126 (209)
T PRK11188 117 KVQVVMSDMA 126 (209)
T ss_pred CCCEEecCCC
Confidence 9999999873
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=8.6e-09 Score=86.33 Aligned_cols=70 Identities=26% Similarity=0.323 Sum_probs=53.0
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEc
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+|||+|||+|.++..++...+...|+++|+|+..++.|++... ..++ .+.++.+|. .-++. +.||+||||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~---~~~l~~~~~~~~dl-f~~~~-~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE---RNGLVRVLVVQSDL-FEPLR-GKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH---HcCCccEEEEeeec-ccccC-CceeEEEeC
Confidence 7999999999999999987766799999999999999987543 2332 344445531 12333 489999998
No 92
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.89 E-value=8.9e-09 Score=87.66 Aligned_cols=90 Identities=16% Similarity=0.034 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030736 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG 150 (172)
Q Consensus 72 ~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~ 150 (172)
.+...++..|+.. ..+ ++...|||+|||||.++...+.. ..+++|+|+++.|+..++.... ..+. .+.++++
T Consensus 165 ~l~~~la~~~~~l-~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~---~~g~~~i~~~~~ 237 (329)
T TIGR01177 165 SMDPKLARAMVNL-ARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLE---HYGIEDFFVKRG 237 (329)
T ss_pred CCCHHHHHHHHHH-hCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHH---HhCCCCCeEEec
Confidence 3444555555432 233 34578999999999998777653 3689999999999999876432 1222 3567889
Q ss_pred cCCCCCCCCCccceEEEc
Q 030736 151 DEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 151 D~e~Lpf~~~sfDlVvS~ 168 (172)
|...+|+++++||+|+++
T Consensus 238 D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 238 DATKLPLSSESVDAIATD 255 (329)
T ss_pred chhcCCcccCCCCEEEEC
Confidence 999999988999999996
No 93
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=8.1e-09 Score=90.95 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030736 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG 150 (172)
Q Consensus 71 d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~ 150 (172)
-++++..+..+...+. . .+..+|||+|||+|..+..++...+..+|+++|.|+.|++.+++... ..+..+.++++
T Consensus 226 ~~iQd~~s~~~~~~l~-~-~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~---~~g~~~~~~~~ 300 (427)
T PRK10901 226 VSVQDAAAQLAATLLA-P-QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ---RLGLKATVIVG 300 (427)
T ss_pred EEEECHHHHHHHHHcC-C-CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEc
Confidence 3455565555554443 2 35679999999999999999876543699999999999999986542 23345677889
Q ss_pred cCCCCC--CCCCccceEEE
Q 030736 151 DEEFLP--LKERFGDQLLG 167 (172)
Q Consensus 151 D~e~Lp--f~~~sfDlVvS 167 (172)
|...++ +++++||.|++
T Consensus 301 D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CcccchhhcccCCCCEEEE
Confidence 988765 34678999995
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=98.88 E-value=2.3e-08 Score=77.27 Aligned_cols=75 Identities=15% Similarity=-0.011 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..++.. ..+++++|.|++|++.+++...........+.++++|... ++.+++||+|+++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEEC
Confidence 4568999999999999999875 3799999999999999876542111111116667777644 4555689999986
No 95
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.87 E-value=6.8e-09 Score=85.48 Aligned_cols=76 Identities=14% Similarity=0.033 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..++.+....+|+++|+.++|.+.|.+.... ....-.+.++++|...+. +...+||+|+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 5789999999999999999875557999999999999999865421 111125788999988774 444689999997
No 96
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.85 E-value=1.7e-08 Score=90.75 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..++...+..+|+++|+|+.|++.+++... ..++ .+.++.+|... ++++++||+|+||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~---~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI---KYEVTDRIQIIHSNWFE-NIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH---HcCCccceeeeecchhh-hCcCCCccEEEEC
Confidence 358999999999999988865455799999999999999986542 1222 46677787532 3345789999996
No 97
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=86.37 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030736 68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF 147 (172)
Q Consensus 68 ~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~ 147 (172)
+|+=.....+++.+++.+. + .+..+|||||||+|.++..|.+.+ .+|+++|+++.|++.+++.... ......+.+
T Consensus 15 GQnFL~d~~i~~~Iv~~~~-~-~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~-~~~~~~v~i 89 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAA-I-KPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQN-SPLASKLEV 89 (294)
T ss_pred CccccCCHHHHHHHHHhcC-C-CCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHh-cCCCCcEEE
Confidence 4433233445666655442 2 345789999999999999998843 6899999999999999865321 011225778
Q ss_pred EEccCCCCCCCCCccceEEEcc
Q 030736 148 VVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 148 ~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+.+|+...+++ .||.|++|+
T Consensus 90 i~~Dal~~~~~--~~d~VvaNl 109 (294)
T PTZ00338 90 IEGDALKTEFP--YFDVCVANV 109 (294)
T ss_pred EECCHhhhccc--ccCEEEecC
Confidence 99998777663 689999986
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.84 E-value=1.7e-08 Score=85.26 Aligned_cols=80 Identities=19% Similarity=0.126 Sum_probs=54.4
Q ss_pred HhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccce
Q 030736 85 LEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQ 164 (172)
Q Consensus 85 L~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDl 164 (172)
|.....+..+|||+|||||.++...+..| .++|+++|+++..++.+++... ..++.....+...+.. ....||+
T Consensus 155 l~~~~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~---~N~~~~~~~v~~~~~~--~~~~~dl 228 (295)
T PF06325_consen 155 LEKYVKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAE---LNGVEDRIEVSLSEDL--VEGKFDL 228 (295)
T ss_dssp HHHHSSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHH---HTT-TTCEEESCTSCT--CCS-EEE
T ss_pred HHHhccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHH---HcCCCeeEEEEEeccc--ccccCCE
Confidence 34445566899999999999998888754 5689999999999999987543 2333223323222222 3489999
Q ss_pred EEEccC
Q 030736 165 LLGASL 170 (172)
Q Consensus 165 VvS~~~ 170 (172)
|++|..
T Consensus 229 vvANI~ 234 (295)
T PF06325_consen 229 VVANIL 234 (295)
T ss_dssp EEEES-
T ss_pred EEECCC
Confidence 999964
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.84 E-value=3.2e-08 Score=78.33 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEE
Q 030736 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFV 148 (172)
Q Consensus 72 ~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~--~~~~~~ 148 (172)
+.+.++....+.++. ..+..+|||+|||+|.++..++.. ++..+|+++|+|++|++.+++... ..+ ..+.++
T Consensus 23 ~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~---~~g~~~~v~~~ 97 (198)
T PRK00377 23 MTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE---KFGVLNNIVLI 97 (198)
T ss_pred CCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCCeEEE
Confidence 444444333333332 235579999999999999887653 344689999999999999876532 122 246677
Q ss_pred EccCCCC-CCCCCccceEEEcc
Q 030736 149 VGDEEFL-PLKERFGDQLLGAS 169 (172)
Q Consensus 149 ~~D~e~L-pf~~~sfDlVvS~~ 169 (172)
.+|...+ +..+++||+|+++.
T Consensus 98 ~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 98 KGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EechhhhHhhcCCCCCEEEECC
Confidence 8887653 43347899999854
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.84 E-value=9.4e-09 Score=81.18 Aligned_cols=87 Identities=24% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHHhHhh------hccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEE
Q 030736 77 VAENLLDRLED------CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFV 148 (172)
Q Consensus 77 va~~l~~rL~~------i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~ 148 (172)
+-+++.+.|.+ +..+-++|||||||.|++...|++.+-..+++|+|.|++.++.|++.+. ..+. .+.|.
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe---~~~~~n~I~f~ 123 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE---RDGFSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH---hcCCCcceeEE
Confidence 33455555443 2334459999999999999999986655679999999999999987653 2333 38899
Q ss_pred EccCCCCCCCCCccceEE
Q 030736 149 VGDEEFLPLKERFGDQLL 166 (172)
Q Consensus 149 ~~D~e~Lpf~~~sfDlVv 166 (172)
+.|+-.-.|..+.||+|.
T Consensus 124 q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 124 QLDITDPDFLSGQFDLVL 141 (227)
T ss_pred EeeccCCcccccceeEEe
Confidence 999887778888999986
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.83 E-value=3.3e-08 Score=81.07 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=49.9
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+..+|||+|||+|.++..+...+ ..+|+++|+|+.|++.+++... ..++... + .++..+.+||+|++|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~---~~~~~~~-~-----~~~~~~~~fD~Vvan 186 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAE---LNGVELN-V-----YLPQGDLKADVIVAN 186 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HcCCCce-E-----EEccCCCCcCEEEEc
Confidence 3456899999999999998887754 3479999999999999986532 1222110 1 112222279999998
Q ss_pred cC
Q 030736 169 SL 170 (172)
Q Consensus 169 ~~ 170 (172)
..
T Consensus 187 i~ 188 (250)
T PRK00517 187 IL 188 (250)
T ss_pred Cc
Confidence 63
No 102
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.83 E-value=5.2e-09 Score=85.54 Aligned_cols=71 Identities=23% Similarity=0.183 Sum_probs=50.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC--CCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~--~~sfDlVvS~ 168 (172)
..++|+|||+|..++.+++. .++|+++|+|++||+++..+..+ ....+..--.+.+-.++. ++|+|+|++.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~---~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPV---TYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCc---ccccCCccccccccccccCCCcceeeehhh
Confidence 47999999999888888884 47999999999999999754311 111122222334444554 8999999874
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.82 E-value=2.1e-08 Score=85.57 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||+|||+|.++..+++..+ .+.|+++|.+++|++.+++... ..+. .+.++.+|....+.+..+||+|++.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~---~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR---RLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 457999999999999999987443 2479999999999999986542 1223 4777889987766666789999985
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 157 ~ 157 (322)
T PRK13943 157 V 157 (322)
T ss_pred C
Confidence 3
No 104
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.2e-08 Score=84.26 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce-eEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET-CFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~-~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|||||||.|.++..|++..+..+++++|.+...++.++.... ...++. ..+.+| -..+.++ +||+||||
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~---~N~~~~~~v~~s~-~~~~v~~-kfd~IisN 231 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA---ANGVENTEVWASN-LYEPVEG-KFDLIISN 231 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH---HcCCCccEEEEec-ccccccc-cccEEEeC
Confidence 358999999999999999988878899999999999999986543 233332 233343 3445555 99999997
No 105
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.80 E-value=5.1e-08 Score=77.72 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=57.1
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC-CCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK-ERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~-~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..+...+ .+++++|+|+.|+..++.... .... .+.+..+|.+.++.+ +++||+|+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAK---KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHH---HcCCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 5789999999999999888743 579999999999999876432 1233 477788888877765 3799999986
No 106
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.79 E-value=3.2e-08 Score=81.48 Aligned_cols=71 Identities=17% Similarity=0.001 Sum_probs=53.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCC-CCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-Lpf-~~~sfDlVvS~ 168 (172)
.+|||+|||+|.++..++...+..+|+++|+|+.|++.+++... ..+ ..++++|... ++- ..+.||+|++|
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~---~~~--~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA---DAG--GTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcC--CEEEEeechhhcchhcCCCEeEEEEC
Confidence 57999999999999998865444689999999999999986532 112 3567888654 321 13579999997
No 107
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.78 E-value=3.7e-08 Score=79.40 Aligned_cols=76 Identities=9% Similarity=-0.080 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh-h---------hccCCCceeEEEccCCCCCCC-C
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ-D---------AHNDNIETCFVVGDEEFLPLK-E 159 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~-~---------~~~~~~~~~~~~~D~e~Lpf~-~ 159 (172)
+..+|||+|||.|..+..|+++| .+|+|+|+|+.+++.+..... . .......+.++++|...++.+ .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 34699999999999999999865 689999999999998643210 0 000123578899999888753 3
Q ss_pred CccceEEEc
Q 030736 160 RFGDQLLGA 168 (172)
Q Consensus 160 ~sfDlVvS~ 168 (172)
+.||+|+-.
T Consensus 112 ~~fD~i~D~ 120 (213)
T TIGR03840 112 GPVDAVYDR 120 (213)
T ss_pred CCcCEEEec
Confidence 578988754
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.4e-08 Score=84.22 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=54.5
Q ss_pred hhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce--eEEEccCCCCCCCC-Cccc
Q 030736 87 DCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET--CFVVGDEEFLPLKE-RFGD 163 (172)
Q Consensus 87 ~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~--~~~~~D~e~Lpf~~-~sfD 163 (172)
...++..+|||+|||+|.++...++.| .++++|+|++|-.++.+++... ..++.. .....+. +..+. +.||
T Consensus 158 ~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~---~N~v~~~~~~~~~~~--~~~~~~~~~D 231 (300)
T COG2264 158 KLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENAR---LNGVELLVQAKGFLL--LEVPENGPFD 231 (300)
T ss_pred HhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHH---HcCCchhhhcccccc--hhhcccCccc
Confidence 334577899999999999999998865 5689999999999999987542 233321 1111221 22333 5999
Q ss_pred eEEEcc
Q 030736 164 QLLGAS 169 (172)
Q Consensus 164 lVvS~~ 169 (172)
+||+|.
T Consensus 232 vIVANI 237 (300)
T COG2264 232 VIVANI 237 (300)
T ss_pred EEEehh
Confidence 999985
No 109
>PTZ00146 fibrillarin; Provisional
Probab=98.77 E-value=3.6e-08 Score=83.03 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=68.0
Q ss_pred cCCChHHHHHHHHHHHHhHhhh-ccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030736 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE 144 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i-~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~ 144 (172)
|+.-++.+..+|..++.-|..+ ..+..+|||||||+|.++.++++.. +.+.|+++|+|+.|++...+.. ....+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a----k~r~N 182 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA----KKRPN 182 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh----hhcCC
Confidence 5556777778877765555444 2456799999999999999998742 3468999999997553332211 01124
Q ss_pred eeEEEccCCC---CCCCCCccceEEEccC
Q 030736 145 TCFVVGDEEF---LPLKERFGDQLLGASL 170 (172)
Q Consensus 145 ~~~~~~D~e~---Lpf~~~sfDlVvS~~~ 170 (172)
+.++++|+.. +++..++||+|++.+.
T Consensus 183 I~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 183 IVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 6678888753 2333468999999775
No 110
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.76 E-value=8.4e-08 Score=75.65 Aligned_cols=91 Identities=10% Similarity=0.022 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030736 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG 150 (172)
Q Consensus 72 ~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~ 150 (172)
....++...+.+.+. + .+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++... ..+. ++.++.+
T Consensus 23 ~t~~~v~~~l~~~l~-~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~---~~~~~~v~~~~~ 97 (196)
T PRK07402 23 LTKREVRLLLISQLR-L-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD---RFGVKNVEVIEG 97 (196)
T ss_pred CCHHHHHHHHHHhcC-C-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCCeEEEEC
Confidence 445556555555442 2 34578999999999999988765455799999999999999986432 1222 4677888
Q ss_pred cCCC-CCCCCCccceEEE
Q 030736 151 DEEF-LPLKERFGDQLLG 167 (172)
Q Consensus 151 D~e~-Lpf~~~sfDlVvS 167 (172)
|++. ++.....+|.|+.
T Consensus 98 d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCI 115 (196)
T ss_pred chHHHHhhCCCCCCEEEE
Confidence 8753 3322234566654
No 111
>PRK00811 spermidine synthase; Provisional
Probab=98.75 E-value=3.5e-08 Score=82.64 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCC-CCCCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEF-LPLKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~-Lpf~~~sfDlVv 166 (172)
...+||+||||+|.+++.+.+.....+|+++|++++|++.+++...... .....+.++.+|+.. ++..+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4578999999999999998875556899999999999999986432100 123457778888754 344567999999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
+.++|
T Consensus 156 ~D~~d 160 (283)
T PRK00811 156 VDSTD 160 (283)
T ss_pred ECCCC
Confidence 98765
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.72 E-value=9.9e-08 Score=64.50 Aligned_cols=74 Identities=23% Similarity=0.168 Sum_probs=56.0
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEEccC
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERFGDQLLGASL 170 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf-~~~sfDlVvS~~~ 170 (172)
++||+|||+|.++..+.. ....+++++|+++.++..+++... ........++.+|....+. ..++||+|+++..
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA--ALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh--cccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999998887 345799999999999998873211 1222356778888776653 5678999998764
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=1e-07 Score=79.83 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=56.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
.+.++|||||||-|.++..+++.. ..+|+|+++|+++++.+++... ..+. +++....|-..++ +.||-|+|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~---~~gl~~~v~v~l~d~rd~~---e~fDrIvS 143 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA---ARGLEDNVEVRLQDYRDFE---EPFDRIVS 143 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH---HcCCCcccEEEeccccccc---cccceeee
Confidence 567999999999999999999865 4699999999999999987543 2333 3555666655554 45999998
Q ss_pred c
Q 030736 168 A 168 (172)
Q Consensus 168 ~ 168 (172)
.
T Consensus 144 v 144 (283)
T COG2230 144 V 144 (283)
T ss_pred h
Confidence 5
No 114
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.4e-07 Score=74.70 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|+|+|||||.++....-.| ...|+++|+++++++.+++.. ......+.|+++|...+. ..||.|+.|
T Consensus 46 g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~---~~l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANA---EELLGDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHH---HhhCCceEEEEcchhhcC---CccceEEEC
Confidence 3579999999999988777544 469999999999999998743 223336899999998875 457777765
No 115
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.71 E-value=7.1e-08 Score=80.55 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=54.6
Q ss_pred HHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC
Q 030736 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP 156 (172)
Q Consensus 79 ~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lp 156 (172)
+.+++++. .++..+|||||||-|.++..++++. ..+|+|+.+|++..+.+++... ..++ .+.+.+.|...++
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~---~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIR---EAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHH---CSTSSSTEEEEES-GGG--
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEEeeccccC
Confidence 34444442 2467899999999999999999864 3589999999999999987653 3343 4667778876665
Q ss_pred CCCCccceEEEcc
Q 030736 157 LKERFGDQLLGAS 169 (172)
Q Consensus 157 f~~~sfDlVvS~~ 169 (172)
. +||.|+|..
T Consensus 126 ~---~fD~IvSi~ 135 (273)
T PF02353_consen 126 G---KFDRIVSIE 135 (273)
T ss_dssp ----S-SEEEEES
T ss_pred C---CCCEEEEEe
Confidence 4 899999963
No 116
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.70 E-value=7.5e-08 Score=77.53 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred HHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030736 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (172)
Q Consensus 77 va~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (172)
+...+++.|. .++..+|||||||+|+++..|+.. ++.+.|+++|..+++.+.|++... ..+. ++.++++|...
T Consensus 60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~---~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA---RLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH---HHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH---HhccCceeEEEcchhh
Confidence 3344445444 346789999999999999999864 345689999999999999987653 2233 67889999764
Q ss_pred CCCCCCccceEEEccC
Q 030736 155 LPLKERFGDQLLGASL 170 (172)
Q Consensus 155 Lpf~~~sfDlVvS~~~ 170 (172)
---+...||.|+++..
T Consensus 135 g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAA 150 (209)
T ss_dssp TTGGG-SEEEEEESSB
T ss_pred ccccCCCcCEEEEeec
Confidence 4334578999998753
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.69 E-value=6.3e-08 Score=85.26 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc--eeEEEc
Q 030736 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--TCFVVG 150 (172)
Q Consensus 73 l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~--~~~~~~ 150 (172)
++++.+..+...+. ..+..+|||+|||+|..+.+++...+.++|+++|+|++|++.+++... ..++. +....+
T Consensus 222 ~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~---r~g~~~~v~~~~~ 296 (426)
T TIGR00563 222 VQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK---RLGLTIKAETKDG 296 (426)
T ss_pred EECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEecc
Confidence 45555555554443 234579999999999999999875445699999999999999986542 23332 334567
Q ss_pred cCCCCCC--CCCccceEEE
Q 030736 151 DEEFLPL--KERFGDQLLG 167 (172)
Q Consensus 151 D~e~Lpf--~~~sfDlVvS 167 (172)
|...+++ ++++||.|++
T Consensus 297 d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 297 DGRGPSQWAENEQFDRILL 315 (426)
T ss_pred ccccccccccccccCEEEE
Confidence 7665554 5678999995
No 118
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.69 E-value=4.5e-08 Score=76.70 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=49.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER 160 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--------f~~~ 160 (172)
++..+|||+|||+|.++..+.... +..+|+++|+|+.| . .. .+.++.+|....+ ++++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~--~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IE--NVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CC--CceEEEeeCCChhHHHHHHHHhCCC
Confidence 356799999999999999887653 34589999999966 1 11 2456777776543 4567
Q ss_pred ccceEEEcc
Q 030736 161 FGDQLLGAS 169 (172)
Q Consensus 161 sfDlVvS~~ 169 (172)
+||+|+++.
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 899999864
No 119
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.67 E-value=8e-08 Score=77.29 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~~~sfDlVvS~ 168 (172)
+..+|||||||+|.++..+...+ .+++++|++++++..+++... .....+.++.++.+.++ ..++.||+|+++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHAL---ESGLKIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHH---HcCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence 45789999999999999998743 689999999999998875432 12334666777777665 345799999885
No 120
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=9e-08 Score=84.50 Aligned_cols=75 Identities=13% Similarity=0.019 Sum_probs=59.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC----CCCCccc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP----LKERFGD 163 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp----f~~~sfD 163 (172)
.+..+|||+|||+|..+.+++... +.++|+++|+++.|++.+++... ..++ .+.++++|...++ +.+++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~---r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ---RLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH---HcCCCeEEEEeCChhhcccccccccccCC
Confidence 345799999999999999888642 34699999999999999986542 2333 4777889988876 5568999
Q ss_pred eEEE
Q 030736 164 QLLG 167 (172)
Q Consensus 164 lVvS 167 (172)
.|++
T Consensus 328 ~Vl~ 331 (434)
T PRK14901 328 RILL 331 (434)
T ss_pred EEEE
Confidence 9996
No 121
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.64 E-value=1.4e-07 Score=82.98 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC----CCCCCCccceE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF----LPLKERFGDQL 165 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~----Lpf~~~sfDlV 165 (172)
+..+|||+|||+|.++..|+.. ..+|+++|+|++|++.+++... ..++ ++.++.+|.+. +++++++||+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~---~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~v 366 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAE---LNGIANVEFLAGTLETVLPKQPWAGQIPDVL 366 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHH---HhCCCceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence 3478999999999999999974 3689999999999999986542 1223 57889999764 23556789999
Q ss_pred EEc
Q 030736 166 LGA 168 (172)
Q Consensus 166 vS~ 168 (172)
+..
T Consensus 367 i~d 369 (431)
T TIGR00479 367 LLD 369 (431)
T ss_pred EEC
Confidence 864
No 122
>PLN02672 methionine S-methyltransferase
Probab=98.64 E-value=1.6e-07 Score=90.75 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=56.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc-c-----------CC--CceeEEEccCCCCCCC
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-N-----------DN--IETCFVVGDEEFLPLK 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~-~-----------~~--~~~~~~~~D~e~Lpf~ 158 (172)
.+|||+|||+|.++..|+...+..+|+++|+|+++++.|++...... . +. -.+.++++|.-.. ++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-CR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-cc
Confidence 58999999999999999876666799999999999999986543110 0 01 1478888987543 22
Q ss_pred C--CccceEEEc
Q 030736 159 E--RFGDQLLGA 168 (172)
Q Consensus 159 ~--~sfDlVvS~ 168 (172)
+ ..||+||||
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 2 369999998
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=9.2e-08 Score=84.52 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030736 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV 149 (172)
Q Consensus 72 ~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~ 149 (172)
+++++.+..+...+ .+ .+..+|||+|||+|..+.+++... +.++|+++|+|+.|++.+++... ..++ .+.+++
T Consensus 220 ~~Qd~~s~~~~~~l-~~-~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~---r~g~~~v~~~~ 294 (431)
T PRK14903 220 TVQGESSQIVPLLM-EL-EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK---RLKLSSIEIKI 294 (431)
T ss_pred EEECHHHHHHHHHh-CC-CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEE
Confidence 45555554443322 22 345789999999999998888642 34699999999999999987542 2333 467788
Q ss_pred ccCCCCC-CCCCccceEEE
Q 030736 150 GDEEFLP-LKERFGDQLLG 167 (172)
Q Consensus 150 ~D~e~Lp-f~~~sfDlVvS 167 (172)
+|...++ +.+++||.|++
T Consensus 295 ~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 295 ADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CchhhhhhhhhccCCEEEE
Confidence 9988876 55688999996
No 124
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.63 E-value=2.2e-07 Score=74.33 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030736 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV 149 (172)
Q Consensus 71 d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~ 149 (172)
.+-.+.+.+.+.+.+.... ...+|||+|||+|.++..+..++ ..+|+++|.++++++.+++.... .++ ++.++.
T Consensus 34 Rp~~d~v~e~l~~~l~~~~-~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~---~~~~~v~~~~ 108 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVI-VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLAT---LKAGNARVVN 108 (199)
T ss_pred CcCCHHHHHHHHHHHhhhc-CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHH---hCCCcEEEEE
Confidence 3444445444544443221 24689999999999998543333 46999999999999998764422 222 477788
Q ss_pred ccCCC-CCCCCCccceEEEc
Q 030736 150 GDEEF-LPLKERFGDQLLGA 168 (172)
Q Consensus 150 ~D~e~-Lpf~~~sfDlVvS~ 168 (172)
+|... ++...++||+|+++
T Consensus 109 ~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 109 TNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred chHHHHHhhcCCCceEEEEC
Confidence 88754 33334579999986
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.62 E-value=1.9e-07 Score=75.56 Aligned_cols=75 Identities=13% Similarity=-0.016 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh-hhh---------ccCCCceeEEEccCCCCCCCC-
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ-QDA---------HNDNIETCFVVGDEEFLPLKE- 159 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~-~~~---------~~~~~~~~~~~~D~e~Lpf~~- 159 (172)
+..+|||+|||.|..+..|+++| .+|+|+|+|+..++.+.... ... ......+.+.++|...++..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 34699999999999999999865 68999999999999874321 000 001235777899988886543
Q ss_pred CccceEEE
Q 030736 160 RFGDQLLG 167 (172)
Q Consensus 160 ~sfDlVvS 167 (172)
..||+|+-
T Consensus 115 ~~fd~v~D 122 (218)
T PRK13255 115 ADVDAVYD 122 (218)
T ss_pred CCeeEEEe
Confidence 57999984
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=98.62 E-value=4.4e-07 Score=76.62 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCcHHHHH-Hh-hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRL-LR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~-L~-~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVv 166 (172)
+..+|||||||.|-++.. ++ ...+..+++++|.+++|++.|++.... ..++ .+.|.++|+..++-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCccCCcEEEECchhhcccccCCcCEEE
Confidence 568999999998855433 33 344567899999999999999875421 1333 58899999877643357899999
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
+..
T Consensus 201 ~~A 203 (296)
T PLN03075 201 LAA 203 (296)
T ss_pred Eec
Confidence 973
No 127
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=1.4e-07 Score=83.33 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp--f~~~sfDlVv 166 (172)
+..+|||+|||+|..+..++... +.++|+++|+++++++.+++... ..++ .+.++++|...++ ++ ++||+|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~---~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK---RLGLTNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence 45789999999999999988642 35799999999999999986542 2333 4778889987763 43 7899999
Q ss_pred Ec
Q 030736 167 GA 168 (172)
Q Consensus 167 S~ 168 (172)
+.
T Consensus 326 ~D 327 (444)
T PRK14902 326 VD 327 (444)
T ss_pred Ec
Confidence 74
No 128
>PRK04457 spermidine synthase; Provisional
Probab=98.61 E-value=1.4e-07 Score=78.29 Aligned_cols=79 Identities=6% Similarity=0.034 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-Lpf~~~sfDlVvS~~ 169 (172)
+..+|||||||+|.++..+....+..+++++|++++|++.+++.... ......+.++++|... ++-.+++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45689999999999999998766667999999999999999864210 1112356778888643 333346899999865
Q ss_pred C
Q 030736 170 L 170 (172)
Q Consensus 170 ~ 170 (172)
.
T Consensus 145 ~ 145 (262)
T PRK04457 145 F 145 (262)
T ss_pred C
Confidence 3
No 129
>PRK04148 hypothetical protein; Provisional
Probab=98.59 E-value=4.5e-07 Score=68.29 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhhhccCCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030736 76 AVAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (172)
Q Consensus 76 eva~~l~~rL~~i~r~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~ 154 (172)
.+++.+.+.+... ...++||+|||+|. ++..|.+.+ .+|+++|+++..++.+++. .+..+++|.-+
T Consensus 3 ~i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~ 69 (134)
T PRK04148 3 TIAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL---------GLNAFVDDLFN 69 (134)
T ss_pred HHHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh---------CCeEEECcCCC
Confidence 3455555544332 23689999999996 999998755 6999999999999888652 24567888766
Q ss_pred CCCC-CCccceEEEc
Q 030736 155 LPLK-ERFGDQLLGA 168 (172)
Q Consensus 155 Lpf~-~~sfDlVvS~ 168 (172)
-+++ -..+|+|.|.
T Consensus 70 p~~~~y~~a~liysi 84 (134)
T PRK04148 70 PNLEIYKNAKLIYSI 84 (134)
T ss_pred CCHHHHhcCCEEEEe
Confidence 5554 3679999885
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=98.59 E-value=2.2e-07 Score=80.43 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh----hhh-ccCCCceeEEEccCCC-CCCCCCccce
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ----QDA-HNDNIETCFVVGDEEF-LPLKERFGDQ 164 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~----~~~-~~~~~~~~~~~~D~e~-Lpf~~~sfDl 164 (172)
...+||++|||+|..++.+.+..++.+|+++|++++|++.|++.. .+. ......+..+++|+.. ++-.++.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 347999999999999888887656789999999999999998521 010 0123467778888754 4545678999
Q ss_pred EEEccCC
Q 030736 165 LLGASLD 171 (172)
Q Consensus 165 VvS~~~~ 171 (172)
|++.+.|
T Consensus 230 IIvDl~D 236 (374)
T PRK01581 230 IIIDFPD 236 (374)
T ss_pred EEEcCCC
Confidence 9998766
No 131
>PRK03612 spermidine synthase; Provisional
Probab=98.58 E-value=1.6e-07 Score=84.89 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=61.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh-h---hh-ccCCCceeEEEccCCC-CCCCCCccc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ-Q---DA-HNDNIETCFVVGDEEF-LPLKERFGD 163 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~-~---~~-~~~~~~~~~~~~D~e~-Lpf~~~sfD 163 (172)
++..+|||+|||+|.+++.+.+...+.+|+++|++++|++.+++.. + +. ...+..++++.+|... +.-.+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3457899999999999999887544589999999999999998631 1 10 0122356778888765 333357999
Q ss_pred eEEEccCC
Q 030736 164 QLLGASLD 171 (172)
Q Consensus 164 lVvS~~~~ 171 (172)
+|+++..|
T Consensus 376 vIi~D~~~ 383 (521)
T PRK03612 376 VIIVDLPD 383 (521)
T ss_pred EEEEeCCC
Confidence 99998876
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=2.4e-07 Score=82.01 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
+..+|||+|||+|..+..+++.. ..++|+++|+|++|++.+++... ..++ .+.++++|+..++ ++++||+|+.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~---~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS---ALGITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH---HhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 45789999999999888877532 23689999999999999986543 2333 4778889988776 5678999995
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.57 E-value=2.8e-07 Score=79.98 Aligned_cols=72 Identities=10% Similarity=0.019 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf-~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..++.. ..+|+++|+++.+++.+++... ..++ .+.++.+|.+.+.. ...+||+|+.+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~---~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQ---MLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 468999999999999999864 3689999999999999986543 2233 57889999865431 12469999864
No 134
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.56 E-value=2.8e-07 Score=78.65 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE-ccCCCCC----CCCCccc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV-GDEEFLP----LKERFGD 163 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~-~D~e~Lp----f~~~sfD 163 (172)
...++||||||+|.+...|..+....+++|+|+++.+++.|++.... ++++ .+.++. .+...+. .+++.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~--Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA--NPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--ccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 34789999999999888887544456899999999999999875532 2122 344432 3333222 2467899
Q ss_pred eEEEc
Q 030736 164 QLLGA 168 (172)
Q Consensus 164 lVvS~ 168 (172)
+|+||
T Consensus 192 livcN 196 (321)
T PRK11727 192 ATLCN 196 (321)
T ss_pred EEEeC
Confidence 99998
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.56 E-value=1.9e-07 Score=77.39 Aligned_cols=75 Identities=8% Similarity=-0.070 Sum_probs=58.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
++..+|||+|||+|..+..++... +.+.|+++|+++.|++.+++... ..++ .+.++.+|...++...++||.|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~---~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN---RCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH---HcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 456799999999999998887632 23589999999999999986542 2233 467788888877766677999986
No 136
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.55 E-value=4.4e-07 Score=76.25 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
+..+|||||||+|.++..++++++..+++++|. ++|++.+++... ..+. .+.++.+|....++++ +|+|+.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 457999999999999999998776679999997 799999876432 2222 4778999987667653 6998755
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 223 ~ 223 (306)
T TIGR02716 223 R 223 (306)
T ss_pred h
Confidence 4
No 137
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.51 E-value=4.9e-07 Score=76.41 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=57.7
Q ss_pred HHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC
Q 030736 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (172)
Q Consensus 79 ~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~ 158 (172)
+++...+.++. ..+|||||||.|+.+-.+..++ .+.|+|+|+++-.+.+..-...- ......+.++-.-.|.||.
T Consensus 105 ~rl~p~l~~L~--gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLPDLK--GKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhCCcC--CCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhccc-
Confidence 34444454433 4789999999999997777754 46899999999887775421100 0111223333256788998
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
.++||+|+|..
T Consensus 180 ~~~FDtVF~MG 190 (315)
T PF08003_consen 180 LGAFDTVFSMG 190 (315)
T ss_pred cCCcCEEEEee
Confidence 78999999965
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.50 E-value=1.4e-06 Score=68.94 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030736 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG 150 (172)
Q Consensus 72 ~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~ 150 (172)
.-+.+|..-.+..|. .++.+.++|+|||||.++..++..++..+|+++|-++++++..+.... .-+. ++..+.+
T Consensus 17 ~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~---~fg~~n~~vv~g 91 (187)
T COG2242 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAA---RFGVDNLEVVEG 91 (187)
T ss_pred CcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHH---HhCCCcEEEEec
Confidence 345555555555554 356789999999999999999866678899999999999998875432 2223 5666778
Q ss_pred cCC-CCCCCCCccceEEEccC
Q 030736 151 DEE-FLPLKERFGDQLLGASL 170 (172)
Q Consensus 151 D~e-~Lpf~~~sfDlVvS~~~ 170 (172)
++. .|+-. .+||.|+-..+
T Consensus 92 ~Ap~~L~~~-~~~daiFIGGg 111 (187)
T COG2242 92 DAPEALPDL-PSPDAIFIGGG 111 (187)
T ss_pred cchHhhcCC-CCCCEEEECCC
Confidence 764 34422 38999986543
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.5e-06 Score=69.98 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred HHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030736 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL 155 (172)
Q Consensus 77 va~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L 155 (172)
+..+|++.|. .++..+|||||||+|+.+..|++. +++|+.+|..+++.+.|++... ..+. ++..+++|...-
T Consensus 60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~---~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLE---TLGYENVTVRHGDGSKG 132 (209)
T ss_pred HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHH---HcCCCceEEEECCcccC
Confidence 4445555444 345689999999999999999984 4699999999999999987543 3444 577788986543
Q ss_pred CCCCCccceEEEcc
Q 030736 156 PLKERFGDQLLGAS 169 (172)
Q Consensus 156 pf~~~sfDlVvS~~ 169 (172)
=-+...||.|+.+.
T Consensus 133 ~~~~aPyD~I~Vta 146 (209)
T COG2518 133 WPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCCCcCEEEEee
Confidence 22347899998764
No 140
>PLN02366 spermidine synthase
Probab=98.47 E-value=9.9e-07 Score=74.93 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=61.0
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-C-CCCCccceE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-P-LKERFGDQL 165 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-p-f~~~sfDlV 165 (172)
....+||+||||+|.+++.+.+...+.+|+++|++++|++.+++..... ......+.++.+|+... . .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3457899999999999999987655789999999999999998643110 11234577788886422 1 235789999
Q ss_pred EEccCC
Q 030736 166 LGASLD 171 (172)
Q Consensus 166 vS~~~~ 171 (172)
++-++|
T Consensus 170 i~D~~d 175 (308)
T PLN02366 170 IVDSSD 175 (308)
T ss_pred EEcCCC
Confidence 997765
No 141
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=1.3e-06 Score=71.27 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~ 130 (172)
...+|||+|||||.++..+.+.+ ..+|+++|+|++|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence 44689999999999999999864 5799999999988876
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.43 E-value=1.7e-06 Score=71.82 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-Lpf~~~sfDlVvS 167 (172)
...+||+||||+|.++..+.......+++++|++++|++.+++...... .....+.++.+|... +.-.+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3469999999999999988775556799999999999999986431100 112245566676532 2323578999999
Q ss_pred ccCC
Q 030736 168 ASLD 171 (172)
Q Consensus 168 ~~~~ 171 (172)
...|
T Consensus 152 D~~~ 155 (270)
T TIGR00417 152 DSTD 155 (270)
T ss_pred eCCC
Confidence 7653
No 143
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.39 E-value=1.3e-06 Score=76.52 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCCC--C--CCCccce
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFLP--L--KERFGDQ 164 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~Lp--f--~~~sfDl 164 (172)
..+|||+|||+|.++...+.. ...+|+++|+|+.+++.+++... ..++ .+.++++|+..+. + ..++||+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~---~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVE---LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH---HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 478999999999998775543 34699999999999999987543 1222 4678889876542 1 3468999
Q ss_pred EEEc
Q 030736 165 LLGA 168 (172)
Q Consensus 165 VvS~ 168 (172)
|+++
T Consensus 297 VilD 300 (396)
T PRK15128 297 IVMD 300 (396)
T ss_pred EEEC
Confidence 9986
No 144
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=3.1e-06 Score=70.73 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhHhhhcc-CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE---
Q 030736 74 VDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV--- 149 (172)
Q Consensus 74 ~~eva~~l~~rL~~i~r-~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~--- 149 (172)
.+|..+.+.|-+..... ....+||+|||+|.++..+....+...++++|.|+..+..+.+...-..-.+ .+..+.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g-~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSG-RIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcC-ceEEEeccc
Confidence 34455555554443221 1247999999999999999876567799999999999999987543111111 122232
Q ss_pred -ccC-CCCCCCCCccceEEEc
Q 030736 150 -GDE-EFLPLKERFGDQLLGA 168 (172)
Q Consensus 150 -~D~-e~Lpf~~~sfDlVvS~ 168 (172)
+|. +..|..++.+|+++||
T Consensus 209 e~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ccccccccccccCceeEEecC
Confidence 221 2334567899999997
No 145
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.4e-06 Score=70.93 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCC-ccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKER-FGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~-sfDlVvS~~ 169 (172)
..+|||||+|.|.++..|.+++ .+|+++++++.|+...++.. ....+++.+.+|+-..+|+.- .++.|++|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence 5799999999999999999854 78999999999999987642 123357779999998888654 689999985
No 146
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.38 E-value=2.5e-06 Score=71.14 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=63.5
Q ss_pred HHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030736 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (172)
Q Consensus 76 eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L 155 (172)
.++..+++.- + .++.+.|||+|.|||+++..|.+.+ ++|+++++++-|+....++-.+ .......+.+++|.-..
T Consensus 45 ~v~~~I~~ka-~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKA-D-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhcc-C-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC
Confidence 3445554432 2 3566899999999999999999855 7999999999999988765321 11112466688887766
Q ss_pred CCCCCccceEEEcc
Q 030736 156 PLKERFGDQLLGAS 169 (172)
Q Consensus 156 pf~~~sfDlVvS~~ 169 (172)
+++ -||.+|+|+
T Consensus 120 d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 120 DLP--RFDGCVSNL 131 (315)
T ss_pred CCc--ccceeeccC
Confidence 653 699999975
No 147
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.3e-06 Score=66.82 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=64.8
Q ss_pred HHHHHHHHhHhhhc--cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030736 76 AVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (172)
Q Consensus 76 eva~~l~~rL~~i~--r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e 153 (172)
++|..|..-+-..- -..++++|||||+|.+.....- .....|+|+|++++.|+.+...+ ....+.+.++++|..
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNa---eEfEvqidlLqcdil 106 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNA---EEFEVQIDLLQCDIL 106 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhch---HHhhhhhheeeeecc
Confidence 45555555443221 1347899999999999865543 34578999999999999997533 234456778999988
Q ss_pred CCCCCCCccceEEEc
Q 030736 154 FLPLKERFGDQLLGA 168 (172)
Q Consensus 154 ~Lpf~~~sfDlVvS~ 168 (172)
.+-+..+-||.++-|
T Consensus 107 dle~~~g~fDtaviN 121 (185)
T KOG3420|consen 107 DLELKGGIFDTAVIN 121 (185)
T ss_pred chhccCCeEeeEEec
Confidence 888888999998865
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.35 E-value=1.7e-06 Score=80.68 Aligned_cols=76 Identities=11% Similarity=-0.112 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-CCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-pf~~~sfDlVvS~ 168 (172)
..+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++....+......+.++++|.... .-..++||+|+++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 4789999999999999998743 45799999999999999875532111112477889986432 1115689999985
No 149
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.34 E-value=1.3e-06 Score=75.47 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=52.6
Q ss_pred HHHHHHHhHhhhcc-CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030736 77 VAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (172)
Q Consensus 77 va~~l~~rL~~i~r-~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (172)
+++.|.+.+..... ...+|||++||+|.++..|+.. ..+|+++|.|+.|++.+++... ..++ ++.++.+|++.
T Consensus 191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~---~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIA---ANGIDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHH---HhCCCcEEEEECCHHH
Confidence 44555554433222 2247999999999999999873 4699999999999999986542 2233 57788888765
No 150
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.33 E-value=1.4e-06 Score=75.15 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHHHHhHhhhcc-CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030736 77 VAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (172)
Q Consensus 77 va~~l~~rL~~i~r-~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (172)
.++.|.+.+..... ...+|||+|||+|.++..|+.. ..+|+++|.|++|++.+++... ..++ ++.++.+|.+.
T Consensus 182 ~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~---~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIA---ANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEEcCHHH
Confidence 34444444433322 2247999999999999999874 3699999999999999986542 2333 57788888765
No 151
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.30 E-value=3.4e-06 Score=67.13 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC-CC--CCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF-LP--LKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~-Lp--f~~~sfDlVv 166 (172)
..+.+||||||.|.+...++...+...++|+|++...+..+..+... .++ ++.++.+|+.. ++ ++++++|-|.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~---~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK---RGLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH---HTTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh---hcccceEEEEccHHHHHhhcccCCchheEE
Confidence 34589999999999999999877888999999999999988765432 233 68889999877 32 5679999999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
-++-|
T Consensus 94 i~FPD 98 (195)
T PF02390_consen 94 INFPD 98 (195)
T ss_dssp EES--
T ss_pred EeCCC
Confidence 88765
No 152
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.27 E-value=7.2e-06 Score=67.79 Aligned_cols=95 Identities=22% Similarity=0.191 Sum_probs=70.0
Q ss_pred cCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030736 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (172)
++|+=..-..+++.+++.+... ....|||+|+|+|.++..|.+.+ .+++++|.++.+.+..++.. .....+.
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~----~~~~~~~ 79 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERF----ASNPNVE 79 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHC----TTCSSEE
T ss_pred CCcCeeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHh----hhcccce
Confidence 4444223445777777766422 45789999999999999999865 89999999999999988643 1234577
Q ss_pred EEEccCCCCCCCC---CccceEEEcc
Q 030736 147 FVVGDEEFLPLKE---RFGDQLLGAS 169 (172)
Q Consensus 147 ~~~~D~e~Lpf~~---~sfDlVvS~~ 169 (172)
.+.+|...+...+ +...+|++|+
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred eeecchhccccHHhhcCCceEEEEEe
Confidence 8999998887765 4667888875
No 153
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.26 E-value=4.1e-06 Score=68.31 Aligned_cols=82 Identities=9% Similarity=-0.070 Sum_probs=58.2
Q ss_pred HhHhhhccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-C--
Q 030736 83 DRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-P-- 156 (172)
Q Consensus 83 ~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-p-- 156 (172)
..|....+ ..+|||+|||+|..+.+++.. ...++|+++|.++++++.+++... ..++ .+.++.+|+... +
T Consensus 61 ~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~---~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 61 SMLVKIMN-AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK---KAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEccHHHHHHHH
Confidence 33433333 478999999999988877653 234699999999999999987543 2232 477788887543 2
Q ss_pred ---CCCCccceEEEc
Q 030736 157 ---LKERFGDQLLGA 168 (172)
Q Consensus 157 ---f~~~sfDlVvS~ 168 (172)
.++++||+|+..
T Consensus 137 ~~~~~~~~fD~VfiD 151 (234)
T PLN02781 137 LNNDPKPEFDFAFVD 151 (234)
T ss_pred HhCCCCCCCCEEEEC
Confidence 124689999875
No 154
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.25 E-value=6.6e-06 Score=70.57 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc----cC---
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH----ND--- 141 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~----~~--- 141 (172)
.++++..+....+..+.. .++..+|||||||-|. +..+... ++..++|+|+|.+.|+.|+++..... ..
T Consensus 42 NNwvKs~LI~~~~~~~~~-~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQ-NRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHCHCCCC-TTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred hHHHHHHHHHHHHHhhhc-cCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 345555544444332211 1156899999999665 6665554 68999999999999999988762110 01
Q ss_pred -CCceeEEEccCCC------CCCCCCccceEEEcc
Q 030736 142 -NIETCFVVGDEEF------LPLKERFGDQLLGAS 169 (172)
Q Consensus 142 -~~~~~~~~~D~e~------Lpf~~~sfDlVvS~~ 169 (172)
.....++.+|.-. ++.+...||+|.|-+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQF 153 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQF 153 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHH
Confidence 1345677887643 233335999998754
No 155
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=7.9e-06 Score=66.63 Aligned_cols=75 Identities=13% Similarity=-0.021 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh--------hh--ccCCCceeEEEccCCCCCCCC-
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ--------DA--HNDNIETCFVVGDEEFLPLKE- 159 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~--------~~--~~~~~~~~~~~~D~e~Lpf~~- 159 (172)
+..+||+.|||.|.-+..|+.+| .+|+|+|+|+..++.+.+... +. ......+.++++|.-.++...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 34799999999999999999866 579999999999999754210 00 012336788999998887422
Q ss_pred --CccceEEE
Q 030736 160 --RFGDQLLG 167 (172)
Q Consensus 160 --~sfDlVvS 167 (172)
+.||+|+=
T Consensus 121 ~~~~fD~VyD 130 (226)
T PRK13256 121 NLPVFDIWYD 130 (226)
T ss_pred ccCCcCeeee
Confidence 57999864
No 156
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.21 E-value=3.8e-06 Score=71.96 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
...|||+|||||.++..-++.| ..+|+++|.|.-+ +.+.+.... ......++.+.+.+|.+.+|.+.+|+|+|-+
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEeehh
Confidence 4789999999999998888766 5799999998644 777655431 1222247778888888777788999999853
No 157
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.21 E-value=4.9e-06 Score=65.24 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC-CCc--------EEEEEeCCHHHHHHHHHhhhhhcc
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIE--------KLIMMDTSYDMLKLCKDAQQDAHN 140 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~--------~v~~vD~S~~mL~~a~~~~~~~~~ 140 (172)
...+...+|.-|+ ++..+. +...+||-=||+|.+...-+..+ ... +++|.|+++++++.+++....
T Consensus 9 ~a~L~~~lA~~ll-~la~~~-~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~--- 83 (179)
T PF01170_consen 9 PAPLRPTLAAALL-NLAGWR-PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA--- 83 (179)
T ss_dssp STSS-HHHHHHHH-HHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH---
T ss_pred CCCCCHHHHHHHH-HHhCCC-CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh---
Confidence 4556667777665 344443 45789999999999875543221 122 389999999999999875432
Q ss_pred CCC--ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 141 DNI--ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 141 ~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
.+. .+.+...|...+|+.++++|.||++.
T Consensus 84 ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnP 114 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELPLPDGSVDAIVTNP 114 (179)
T ss_dssp TT-CGGEEEEE--GGGGGGTTSBSCEEEEE-
T ss_pred cccCCceEEEecchhhcccccCCCCEEEECc
Confidence 333 47788899999998889999999974
No 158
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.19 E-value=2.5e-06 Score=65.52 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=39.3
Q ss_pred EEEeCCHHHHHHHHHhhhhhc-cCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 119 IMMDTSYDMLKLCKDAQQDAH-NDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 119 ~~vD~S~~mL~~a~~~~~~~~-~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
+|+|+|++||+.|+++..... .....+.++++|++.+|+++++||+|++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~ 52 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY 52 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc
Confidence 489999999999975432100 011257899999999999999999999875
No 159
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.16 E-value=7.9e-06 Score=69.11 Aligned_cols=76 Identities=22% Similarity=0.055 Sum_probs=57.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCC--Cccce
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKE--RFGDQ 164 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~~--~sfDl 164 (172)
.+...+||.+||.|..+..+.+..+ .++|+|+|.+++|++.+++... ..-.+.+++++...++ +++ .++|.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----~~~ri~~i~~~f~~l~~~l~~~~~~vDg 93 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----PFGRFTLVHGNFSNLKEVLAEGLGKVDG 93 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----cCCcEEEEeCCHHHHHHHHHcCCCccCE
Confidence 3457999999999999999987653 5799999999999999986531 1225777888877653 222 27999
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
|+..+
T Consensus 94 Il~DL 98 (296)
T PRK00050 94 ILLDL 98 (296)
T ss_pred EEECC
Confidence 98765
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.12 E-value=1.8e-05 Score=70.49 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCcHHHHHHhhc----CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~----~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
...|||+|||+|-+.....+. +...+|+++|-++......++.... ..-+-.++.+.+|++.+..+ +.+|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-NGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-TTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-cCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 467999999999997655432 2346999999998777655433110 11223588899999999875 48999999
Q ss_pred cc
Q 030736 168 AS 169 (172)
Q Consensus 168 ~~ 169 (172)
=+
T Consensus 265 El 266 (448)
T PF05185_consen 265 EL 266 (448)
T ss_dssp --
T ss_pred ec
Confidence 54
No 161
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.03 E-value=2.5e-05 Score=63.28 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh-hcc---------CCCceeEEEccCCCCCCCC-
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-AHN---------DNIETCFVVGDEEFLPLKE- 159 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~-~~~---------~~~~~~~~~~D~e~Lpf~~- 159 (172)
+..+||..|||.|.-...|+.+| .+|+|+|+|+..++.+.+.... ... ..-.+.++++|.-.++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 34689999999999999999865 6999999999999998432110 000 0113577889988876544
Q ss_pred CccceEEE
Q 030736 160 RFGDQLLG 167 (172)
Q Consensus 160 ~sfDlVvS 167 (172)
++||+|+=
T Consensus 115 g~fD~iyD 122 (218)
T PF05724_consen 115 GKFDLIYD 122 (218)
T ss_dssp HSEEEEEE
T ss_pred CCceEEEE
Confidence 47999973
No 162
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.02 E-value=2e-05 Score=61.58 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERFGDQ 164 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~~~sfDl 164 (172)
+..-|||+|.|||-+++.+..++ +...++.++.|++......++. + .+.++.||+..+. ++...||.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p--~~~ii~gda~~l~~~l~e~~gq~~D~ 120 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----P--GVNIINGDAFDLRTTLGEHKGQFFDS 120 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----C--CccccccchhhHHHHHhhcCCCeeee
Confidence 34579999999999999998765 3468999999999999886532 2 3446888888774 66788999
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
|+|++
T Consensus 121 viS~l 125 (194)
T COG3963 121 VISGL 125 (194)
T ss_pred EEecc
Confidence 99975
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.02 E-value=6e-05 Score=60.53 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=58.2
Q ss_pred HHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC
Q 030736 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP 156 (172)
Q Consensus 81 l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-Lp 156 (172)
++..|....+ ..+||||||++|+-+.+++... +.++|+.+|.++++.+.|++... ..+. .+.++.+|+.. ++
T Consensus 36 lL~~l~~~~~-~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~---~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 36 LLQMLVRLTR-PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFR---KAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHHT--SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHH---HTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHHhcC-CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHH---hcCCCCcEEEEEeccHhhHH
Confidence 3344444443 4799999999999999998643 35799999999999999986543 2333 57788887643 32
Q ss_pred -C----CCCccceEEE
Q 030736 157 -L----KERFGDQLLG 167 (172)
Q Consensus 157 -f----~~~sfDlVvS 167 (172)
+ +.+.||+|+-
T Consensus 112 ~l~~~~~~~~fD~VFi 127 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFI 127 (205)
T ss_dssp HHHHTTTTTSEEEEEE
T ss_pred HHHhccCCCceeEEEE
Confidence 1 1358999985
No 164
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.02 E-value=2e-05 Score=63.61 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=35.9
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
...|.|+|||.+.++..+.. ..+|...|+-. .+ ...+.+|+.++|++++++|+||.|++
T Consensus 73 ~~viaD~GCGdA~la~~~~~---~~~V~SfDLva---------------~n--~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA---------------PN--PRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S------EEEEESS----------------SS--TTEEES-TTS-S--TT-EEEEEEES-
T ss_pred CEEEEECCCchHHHHHhccc---CceEEEeeccC---------------CC--CCEEEecCccCcCCCCceeEEEEEhh
Confidence 35899999999999988764 24799999843 11 22477999999999999999999975
No 165
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.99 E-value=2.1e-05 Score=65.60 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhh
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+|||+|||+|...-++.+.. ...+++++|.|+.|++.++...
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 3689999999997665554422 3578999999999999988754
No 166
>PLN02823 spermine synthase
Probab=97.98 E-value=4.5e-05 Score=65.58 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-Lpf~~~sfDlVvS 167 (172)
...+||.||+|.|.+++.+.+..+..+|+++|+++++++.+++...... .....+..+.+|+-. +.-.+++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3468999999999999988775557899999999999999986531100 123457778888653 3444678999998
Q ss_pred ccCC
Q 030736 168 ASLD 171 (172)
Q Consensus 168 ~~~~ 171 (172)
-++|
T Consensus 183 D~~d 186 (336)
T PLN02823 183 DLAD 186 (336)
T ss_pred cCCC
Confidence 7665
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=64.82 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=62.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp---f~~~sfDlVvS~ 168 (172)
+.+||||||.|.+...++++.+...++|||+....+..+-++.. ..++ ++..++.|+..+- ++++|.|-|.-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~---~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIK---ELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHH---HcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 68999999999999999988888899999999998888866543 3556 7777888876542 445699999998
Q ss_pred cCC
Q 030736 169 SLD 171 (172)
Q Consensus 169 ~~~ 171 (172)
+-|
T Consensus 127 FPD 129 (227)
T COG0220 127 FPD 129 (227)
T ss_pred CCC
Confidence 877
No 168
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=3e-05 Score=68.74 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHHhHhhhc--cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030736 77 VAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE 153 (172)
Q Consensus 77 va~~l~~rL~~i~--r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e 153 (172)
+++.|.+...+.. .+.+++||+=||.|.++..|++ ...+|+|+|+++++++.|++.+. ..++ ++.|+.+++|
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~---~n~i~N~~f~~~~ae 351 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAA---ANGIDNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHH---HcCCCcEEEEeCCHH
Confidence 4444444433332 2446899999999999999997 56899999999999999987543 3444 5889999998
Q ss_pred CCCCCC---CccceEEE
Q 030736 154 FLPLKE---RFGDQLLG 167 (172)
Q Consensus 154 ~Lpf~~---~sfDlVvS 167 (172)
.+.... ..+|.|+-
T Consensus 352 ~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 352 EFTPAWWEGYKPDVVVV 368 (432)
T ss_pred HHhhhccccCCCCEEEE
Confidence 776443 47899874
No 169
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=2e-05 Score=64.87 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=38.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+|||||.+|.++.++++.+....|+|+|+++-++++|++..
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~ 102 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI 102 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhc
Confidence 5699999999999999998766678999999999999998754
No 170
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.96 E-value=3.5e-05 Score=66.49 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=43.2
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL 155 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L 155 (172)
..|||+=||.|.++..|+. ...+|+|+|.++++++.|++.+. ..++ ++.|+.++++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~--~~~~V~gvE~~~~av~~A~~Na~---~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAK--KAKKVIGVEIVEEAVEDARENAK---LNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp TEEEEES-TTTCCHHHHHC--CSSEEEEEES-HHHHHHHHHHHH---HTT--SEEEEE--SHHC
T ss_pred CcEEEEeecCCHHHHHHHh--hCCeEEEeeCCHHHHHHHHHHHH---HcCCCcceEEEeeccch
Confidence 4799999999999999998 45899999999999999986542 3344 578888776543
No 171
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.93 E-value=5.9e-05 Score=59.64 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CC-C-CCC-ccceEEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-L-KER-FGDQLLG 167 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-Lp-f-~~~-sfDlVvS 167 (172)
..+|||++||+|.++..+..++ ..+|+++|.++.+++.+++..... ...-.+.++.+|... +. + ... .||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~-~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALL-KSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4689999999999999998865 358999999999999887644211 111135678888733 32 2 122 3677764
No 172
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.93 E-value=2.3e-05 Score=64.98 Aligned_cols=64 Identities=16% Similarity=-0.043 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..++||||+|.|.++..++. -.++|++.|.|+.|..+.+++ +.. +.+..++.-.+..||+|.|.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~--~f~~v~aTE~S~~Mr~rL~~k-------g~~----vl~~~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAP--LFKEVYATEASPPMRWRLSKK-------GFT----VLDIDDWQQTDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHh--hcceEEeecCCHHHHHHHHhC-------CCe----EEehhhhhccCCceEEEeeh
Confidence 46899999999999999998 447899999999999988653 222 22333344445689999875
No 173
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.91 E-value=2.2e-05 Score=67.02 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=57.3
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc---CC-CceeEEEccCC------CCCCC
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DN-IETCFVVGDEE------FLPLK 158 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~---~~-~~~~~~~~D~e------~Lpf~ 158 (172)
.++...+||||||-|.=..-+... .+++++|+|+++..++.|+....+... .. ..+.|+++|.. .++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 355678999999988654444432 688999999999999999876643221 11 25778888753 45777
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
+.+||+|-|-+
T Consensus 194 dp~fDivScQF 204 (389)
T KOG1975|consen 194 DPRFDIVSCQF 204 (389)
T ss_pred CCCcceeeeee
Confidence 77899998754
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.89 E-value=8.7e-05 Score=57.75 Aligned_cols=77 Identities=16% Similarity=0.033 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh-hhccCCCceeEEEccCCC-C--C-CCCCccceE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ-DAHNDNIETCFVVGDEEF-L--P-LKERFGDQL 165 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~-~~~~~~~~~~~~~~D~e~-L--p-f~~~sfDlV 165 (172)
...+|||||||+|..+..++......+|+..|..+ .++..+.... |.......+.....|=.. . + ++++.||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 45799999999999999888763457999999999 7777665432 110011234334433211 1 1 345689999
Q ss_pred EEc
Q 030736 166 LGA 168 (172)
Q Consensus 166 vS~ 168 (172)
+.+
T Consensus 124 las 126 (173)
T PF10294_consen 124 LAS 126 (173)
T ss_dssp EEE
T ss_pred EEe
Confidence 975
No 175
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.85 E-value=3.3e-05 Score=67.43 Aligned_cols=74 Identities=18% Similarity=0.042 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|||++||+|.++..++...+..+|+++|+++..++.+++... ..++ ...+..+|++.+....+.||+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~---~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLE---LNGLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 358999999999999998764445689999999999999886432 1222 3456778876543224679999864
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.82 E-value=0.0001 Score=59.92 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE-ccC-CCCC-CCCCccce
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV-GDE-EFLP-LKERFGDQ 164 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~-~D~-e~Lp-f~~~sfDl 164 (172)
+..+|||||.+.|+-+.+++..-+ .++++.+|.++++.+.|++... ..++ .+..+. +|. +.+. +..++||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~---~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA---EAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH---HcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 457999999999999999986444 5799999999999999987543 2333 355566 343 2222 45799999
Q ss_pred EEE
Q 030736 165 LLG 167 (172)
Q Consensus 165 VvS 167 (172)
|+-
T Consensus 136 iFI 138 (219)
T COG4122 136 VFI 138 (219)
T ss_pred EEE
Confidence 984
No 177
>PLN02476 O-methyltransferase
Probab=97.81 E-value=0.00013 Score=61.20 Aligned_cols=73 Identities=10% Similarity=-0.052 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC-C----CCCcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP-L----KERFG 162 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-Lp-f----~~~sf 162 (172)
..+|||+|+++|..+.+++.. ++.++|+.+|.++++.+.|++... ..+. .+.++.+|+.. || + .+++|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~---~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE---LAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 478999999999999999863 234689999999999999987543 2333 57778888633 33 1 24689
Q ss_pred ceEEE
Q 030736 163 DQLLG 167 (172)
Q Consensus 163 DlVvS 167 (172)
|+|+-
T Consensus 196 D~VFI 200 (278)
T PLN02476 196 DFAFV 200 (278)
T ss_pred CEEEE
Confidence 99985
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.81 E-value=8.6e-05 Score=69.45 Aligned_cols=95 Identities=9% Similarity=-0.056 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc------------C------------------------
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR------------G------------------------ 113 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~------------~------------------------ 113 (172)
..++++-+|..|+. +..+..+...++|-+||+|.+....+.. +
T Consensus 170 ~Apl~etlAaa~l~-~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 170 EAPLKENLAAAILL-RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCcHHHHHHHHH-HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 56788888887773 5555344578999999999887554320 0
Q ss_pred ------CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCC--CCccceEEEc
Q 030736 114 ------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLK--ERFGDQLLGA 168 (172)
Q Consensus 114 ------~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~--~~sfDlVvS~ 168 (172)
...+++|+|+++.|+..|+.... ..++ .+.+.++|...++.+ .++||+|++|
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~---~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNAR---RAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHH---HcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 01269999999999999987543 2343 367888999888654 3589999998
No 179
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.80 E-value=0.0002 Score=53.80 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=37.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh-----cCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 90 KTFPTALCLGGSLEAVRRLLRG-----RGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~-----~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
.+...|+|+|||-|+++..|.. . +.-+|+++|.++.+++.+....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHH
Confidence 3457899999999999999987 4 4569999999999999887554
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00021 Score=60.07 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-Lpf~~~sfDlVvS~ 168 (172)
..+||-||-|.|..++.+.+...+++++++|+.+++++.+++....-. .....+..+..|.-. +.-.++.||+|+.-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 369999999999999999987788999999999999999986542110 112445667777643 33233489999999
Q ss_pred cCC
Q 030736 169 SLD 171 (172)
Q Consensus 169 ~~~ 171 (172)
++|
T Consensus 157 ~td 159 (282)
T COG0421 157 STD 159 (282)
T ss_pred CCC
Confidence 887
No 181
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.74 E-value=0.00027 Score=49.03 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=46.6
Q ss_pred EEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEEccCCC--CCCCC-CccceEEE
Q 030736 95 ALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEF--LPLKE-RFGDQLLG 167 (172)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~-~~v~~vD~S~~mL~~a~~~~~~~~~~~~~-~~~~~~D~e~--Lpf~~-~sfDlVvS 167 (172)
++|+|||+|... .+...... ..++++|+++.|+........ ..... +.+..++... +|+.+ ..||++.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE---GAGLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh---hcCCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999865 33332111 378999999999999543211 11111 4667777765 89887 58999933
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.71 E-value=7.7e-05 Score=67.35 Aligned_cols=79 Identities=10% Similarity=-0.048 Sum_probs=61.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERFGDQLL 166 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp--f~~~sfDlVv 166 (172)
...+.+||||||.|.+...++...+...++|+|++..-+..+-.+.. ..++ ++.++..|++.+. |+++++|.|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~---~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAG---EQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH---HcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 34578999999999999999988788899999999988877654432 2333 4555667765442 7789999999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
.++-|
T Consensus 423 i~FPD 427 (506)
T PRK01544 423 ILFPD 427 (506)
T ss_pred EECCC
Confidence 99877
No 183
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.71 E-value=0.00017 Score=62.20 Aligned_cols=72 Identities=18% Similarity=0.051 Sum_probs=51.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
.+..++|||||++|.++..|.+++ ..|++||.++ |-.... ....+....+|.-....+.+.+|+|+|=|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L~--------~~~~V~h~~~d~fr~~p~~~~vDwvVcDm 278 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSLM--------DTGQVEHLRADGFKFRPPRKNVDWLVCDM 278 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhhh--------CCCCEEEEeccCcccCCCCCCCCEEEEec
Confidence 466899999999999999999865 5999999654 332221 22346666666543322267899999988
Q ss_pred CCC
Q 030736 170 LDK 172 (172)
Q Consensus 170 ~~~ 172 (172)
..+
T Consensus 279 ve~ 281 (357)
T PRK11760 279 VEK 281 (357)
T ss_pred ccC
Confidence 764
No 184
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.67 E-value=0.00019 Score=58.06 Aligned_cols=66 Identities=23% Similarity=0.181 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+|||||+|+|.++..+++..+.-+++.+|+ |++++.+++ ...+.++.+|.. -|+|. +|+|+..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~ 165 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLR 165 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeee
Confidence 457899999999999999998888789999999 888888864 235888999986 56665 9999865
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.66 E-value=6.7e-05 Score=58.32 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=48.2
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC--CCCCc-cceEEEc
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP--LKERF-GDQLLGA 168 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lp--f~~~s-fDlVvS~ 168 (172)
.|+|+.||.|..+..++.. ..+|+++|+++..++.+++.. ..-++ .+.++++|...+. +..+. ||+|+.+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa---~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNA---EVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHH---HHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHH---HHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999985 478999999999999998754 23444 5889999876542 22222 7999864
No 186
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.64 E-value=0.00021 Score=57.29 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=51.6
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
-.+..+|||+-||-|.++..++...+...|+++|++|..++..++...-++ -.-.+..+.+|...++- .+.||-|+.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 345689999999999999999875556789999999998888775443111 11236678899887765 7899999987
Q ss_pred cC
Q 030736 169 SL 170 (172)
Q Consensus 169 ~~ 170 (172)
+-
T Consensus 177 lp 178 (200)
T PF02475_consen 177 LP 178 (200)
T ss_dssp -T
T ss_pred Ch
Confidence 63
No 187
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.64 E-value=0.00013 Score=60.81 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
...|.|+|||.+.++.. ....|..+|+-+ +.-..+.+|+..+|++++|.|++|.|++
T Consensus 181 ~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-----ERHKVHSFDLVA-----------------VNERVIACDMRNVPLEDESVDVAVFCLS 237 (325)
T ss_pred ceEEEecccchhhhhhc-----cccceeeeeeec-----------------CCCceeeccccCCcCccCcccEEEeeHh
Confidence 46799999999988762 224789999732 1223478999999999999999999875
No 188
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=6.8e-05 Score=61.67 Aligned_cols=76 Identities=17% Similarity=0.003 Sum_probs=49.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCC--cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~--~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~Lpf~~~sfDlVvS~ 168 (172)
.+||++|||.|+..-.|.+..+. -.|.++|.|+..++..++...- ........+...+.+ .-|++.+++|.|+..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-DESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-chhhhcccceeccchhccCCCCcCccceEEEE
Confidence 37999999999987777654333 5899999999999998754310 001111212222223 336788999999876
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
+
T Consensus 152 F 152 (264)
T KOG2361|consen 152 F 152 (264)
T ss_pred E
Confidence 4
No 189
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.60 E-value=0.00024 Score=61.32 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...|||+|||+|.++-..+..| .++|++++.| +|-+.|+..... ....-.+..+-|-.|++.+| +..|++||-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~-N~~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVAS-NNLADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhc-CCccceEEEccCccccccCc-hhccEEEec
Confidence 3679999999999887766654 5799999986 588888876532 11112566677889988885 689999983
No 190
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.59 E-value=0.00048 Score=55.38 Aligned_cols=75 Identities=9% Similarity=-0.068 Sum_probs=47.5
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC--CCCCC------CCCccceE
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE--EFLPL------KERFGDQL 165 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~--e~Lpf------~~~sfDlV 165 (172)
+|||||||||.-+.++++..+.-.+...|.++..+..-..-.......++.. .+..|+ ...|. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-PLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-CeEeecCCCCCccccccccCCCCccee
Confidence 5999999999999999987776788899999988643322111111122211 122232 22333 35799999
Q ss_pred EEcc
Q 030736 166 LGAS 169 (172)
Q Consensus 166 vS~~ 169 (172)
+|..
T Consensus 107 ~~~N 110 (204)
T PF06080_consen 107 FCIN 110 (204)
T ss_pred eehh
Confidence 9863
No 191
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.57 E-value=7.8e-05 Score=66.75 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=44.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcE--EEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEK--LIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~--v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.++||+|||+|.++..|.+++ +-. +..-|..+..++.|-+ .++...+-+.....|||++++||+|-|+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfale-------RGvpa~~~~~~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALE-------RGVPAMIGVLGSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhh-------cCcchhhhhhccccccCCccchhhhhcc
Confidence 579999999999999998854 211 1122444555555532 3443322233357899999999999764
No 192
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.55 E-value=0.00025 Score=58.51 Aligned_cols=73 Identities=14% Similarity=-0.051 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCC-CCC------CCCc
Q 030736 92 FPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF-LPL------KERF 161 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~-Lpf------~~~s 161 (172)
..+|||||+++|+-+.+++.. .+.++|+.+|.++++.+.|++.... .+ -.+.++++++.. ||- ..++
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~---ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK---AGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH---CCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 478999999999999988753 2357999999999999999865432 33 257788887643 331 1368
Q ss_pred cceEEE
Q 030736 162 GDQLLG 167 (172)
Q Consensus 162 fDlVvS 167 (172)
||+|+.
T Consensus 157 fD~iFi 162 (247)
T PLN02589 157 FDFIFV 162 (247)
T ss_pred ccEEEe
Confidence 999985
No 193
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.54 E-value=0.00019 Score=53.09 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=36.6
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
++||+|||.|.++..+...++..+++++|+++++.+.+++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence 489999999999999988665568999999999999887653
No 194
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.54 E-value=0.00042 Score=55.41 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=58.2
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEccCC
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGASLD 171 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~~~ 171 (172)
+.+.|||+|+|.++-..++ ...+|++++.+|.--..+.+.. +..+. ++..+++|+....| +..|+|+|-|.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~--~A~rViAiE~dPk~a~~a~eN~---~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH--AAERVIAIEKDPKRARLAEENL---HVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHh--hhceEEEEecCcHHHHHhhhcC---CCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 6799999999998877766 3579999999999888887532 22333 57779999999999 568999998877
No 195
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.53 E-value=0.00029 Score=63.60 Aligned_cols=44 Identities=11% Similarity=-0.035 Sum_probs=34.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCC--------CcEEEEEeCCHHHHHHHHHhh
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGG--------IEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~--------~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+|||.|||+|.+...+..... ..+++|+|+++..+..++...
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45899999999999877764221 247899999999999987543
No 196
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00064 Score=56.24 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=61.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeEEEccCCCCCCCCCccceEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEFLPLKERFGDQLL 166 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~-~~~~~~D~e~Lpf~~~sfDlVv 166 (172)
.+..+|||.|.|+|.++..|+. .++.++|+..|.-+++++.|++.... .++ + +.+..+|..+.-+++ .||+|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~---~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE---FGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH---hccccceEEEecccccccccc-ccCEEE
Confidence 4678999999999999999985 45668999999999999999875432 233 2 677778888777765 899998
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
--|-|
T Consensus 169 LDmp~ 173 (256)
T COG2519 169 LDLPD 173 (256)
T ss_pred EcCCC
Confidence 75543
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00054 Score=55.45 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=62.5
Q ss_pred HhHhhhccCCCeEEEEcCCCcHHHHHHhhc-C-CCcEEEEEeCCHHHHHHHHHhhhh-hc-------cCCCceeEEEccC
Q 030736 83 DRLEDCRKTFPTALCLGGSLEAVRRLLRGR-G-GIEKLIMMDTSYDMLKLCKDAQQD-AH-------NDNIETCFVVGDE 152 (172)
Q Consensus 83 ~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~-~-~~~~v~~vD~S~~mL~~a~~~~~~-~~-------~~~~~~~~~~~D~ 152 (172)
+.|.+..++.-+.||+|+|+|+++..+... + +.....|+|.-+++++.+.+.... .+ -...++.++++|.
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 444444567789999999999999877631 1 223459999999999998765421 10 1112567789999
Q ss_pred CCCCCCCCccceEEEccC
Q 030736 153 EFLPLKERFGDQLLGASL 170 (172)
Q Consensus 153 e~Lpf~~~sfDlVvS~~~ 170 (172)
...--+...||.|.+--.
T Consensus 154 r~g~~e~a~YDaIhvGAa 171 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAA 171 (237)
T ss_pred cccCCccCCcceEEEccC
Confidence 888778899999987643
No 198
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0022 Score=50.98 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+||||||+|.++..|... ++...+.++|+++..++.-.+.+. .....+..+..|... .+.+++.|+++-|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~---~n~~~~~~V~tdl~~-~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR---CNRVHIDVVRTDLLS-GLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH---hcCCccceeehhHHh-hhccCCccEEEEC
Confidence 467999999999999988763 345678999999999998665442 233345556766432 2344889988765
No 199
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.45 E-value=0.00046 Score=55.94 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
...++||.|||-|.++..|.-. ...+|-.+|+.+..++.|++.... .......+.+...+++-.++..||+|++-.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 4678999999999999987532 357999999999999999854311 011123445555555554567999999854
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.44 E-value=0.00064 Score=53.74 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=50.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEccC
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
.+++|+|+|.|.=+..|+=..+..+++.+|....=+.-.++... ..++ ++..+.+.+|. +....+||+|+|--.
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~---~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR---ELGLSNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH---HHT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH---HhCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence 38999999999766666533356789999999866555443221 2233 47778888888 666789999998643
No 201
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.41 E-value=0.00068 Score=56.89 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc-------CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-
Q 030736 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI- 143 (172)
Q Consensus 72 ~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~-------~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~- 143 (172)
|--..+++.|.+.+. .....+|+|-.||+|.+...+.+. .....++|+|+++.++..+.-... -.+.
T Consensus 29 ~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~---l~~~~ 103 (311)
T PF02384_consen 29 YTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL---LHGID 103 (311)
T ss_dssp ---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH---HTTHH
T ss_pred ehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh---hhccc
Confidence 344556666655552 234468999999999987666541 134689999999999998863221 1122
Q ss_pred --ceeEEEccCCCCCC-C-CCccceEEEc
Q 030736 144 --ETCFVVGDEEFLPL-K-ERFGDQLLGA 168 (172)
Q Consensus 144 --~~~~~~~D~e~Lpf-~-~~sfDlVvS~ 168 (172)
......+|.-..+. . ...||+|++|
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE
T ss_pred cccccccccccccccccccccccccccCC
Confidence 12345566433332 2 4789999997
No 202
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.38 E-value=0.0028 Score=52.37 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--c
Q 030736 68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--E 144 (172)
Q Consensus 68 ~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~ 144 (172)
+....++..-+.-++-++ ++ ++..+|||.|.|+|.++..|+. .++.++|+..|..++..+.|++.... .++ .
T Consensus 19 rrtQIiYpkD~~~I~~~l-~i-~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~---~gl~~~ 93 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRL-DI-RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER---HGLDDN 93 (247)
T ss_dssp SSS----HHHHHHHHHHT-T---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---TTCCTT
T ss_pred CCcceeeCchHHHHHHHc-CC-CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH---cCCCCC
Confidence 334444444333333333 22 5678999999999999999985 34668999999999999999876432 233 4
Q ss_pred eeEEEccCCCCCCC---CCccceEEEcc
Q 030736 145 TCFVVGDEEFLPLK---ERFGDQLLGAS 169 (172)
Q Consensus 145 ~~~~~~D~e~Lpf~---~~sfDlVvS~~ 169 (172)
+.+.+.|...-.|+ ++.+|.|+-=|
T Consensus 94 v~~~~~Dv~~~g~~~~~~~~~DavfLDl 121 (247)
T PF08704_consen 94 VTVHHRDVCEEGFDEELESDFDAVFLDL 121 (247)
T ss_dssp EEEEES-GGCG--STT-TTSEEEEEEES
T ss_pred ceeEecceecccccccccCcccEEEEeC
Confidence 77788887544442 36799998644
No 203
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00066 Score=59.21 Aligned_cols=98 Identities=10% Similarity=-0.047 Sum_probs=73.9
Q ss_pred cCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCC-C------------------------------
Q 030736 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-I------------------------------ 115 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~-~------------------------------ 115 (172)
+....+|++-+|..|+. |+.+... ..++|-=||+|.+....+-.+. +
T Consensus 169 ~~g~ApLketLAaAil~-lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 169 YDGPAPLKETLAAAILL-LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred cCCCCCchHHHHHHHHH-HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 45578899999988863 4555433 6799999999998766653221 1
Q ss_pred --------cEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 116 --------EKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 116 --------~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..++|+|+++.|++.|+..+. ..++ .+.|.++|+..++-+-+.+|+||||-
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~---~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHIEGAKANAR---AAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHhhcCccceEEEecCCHHHHHHHHHHHH---hcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 147899999999999987553 4555 48899999998875448999999983
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.37 E-value=0.00085 Score=55.20 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-CCCCC-ccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-PLKER-FGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-pf~~~-sfDlVv 166 (172)
...+||-||-|.|..++.+.+..++.+|+++|+++.+++.+++-.... ......+..+.+|+-.+ --..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 468999999999999999987666789999999999999997642110 11234566688876432 22233 899999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
.-.+|
T Consensus 156 ~D~~d 160 (246)
T PF01564_consen 156 VDLTD 160 (246)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 87766
No 205
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.00072 Score=58.28 Aligned_cols=72 Identities=17% Similarity=0.015 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc-cCCCCCCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG-DEEFLPLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~-D~e~Lpf~~~sfDlVvS 167 (172)
+...|||==||||.+.....-.| .+++|+|++..|+.-++.... .-++ ...+..+ |+..+||++++||.|++
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~---~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLE---YYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhh---hhCcCceeEEEecccccCCCCCCccceEEe
Confidence 45799999999999988776544 699999999999999975432 1223 2333444 99999999999999986
No 206
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.23 E-value=0.0037 Score=53.51 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCC--CCC
Q 030736 91 TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPL--KER 160 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----Lpf--~~~ 160 (172)
+...++|+|||+|.=++.|.+ .+....++++|+|.++|+.+.+......-+.+.+.-+++|-+. +|- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 445899999999986665543 2234579999999999999876542101123345557776543 322 223
Q ss_pred ccceEEEcc
Q 030736 161 FGDQLLGAS 169 (172)
Q Consensus 161 sfDlVvS~~ 169 (172)
...+|+...
T Consensus 156 ~~r~~~flG 164 (319)
T TIGR03439 156 RPTTILWLG 164 (319)
T ss_pred CccEEEEeC
Confidence 466766543
No 207
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00064 Score=61.11 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL 155 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L 155 (172)
....+||+-||||.++..+++ ++++|+|+++|++.+.-|+..+ ...++ +.+|++|-+|++
T Consensus 383 ~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA---~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNA---QINGISNATFIVGQAEDL 443 (534)
T ss_pred CCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcc---hhcCccceeeeecchhhc
Confidence 347899999999999999998 6789999999999999998643 34555 688999955544
No 208
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.17 E-value=0.0016 Score=58.47 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030736 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV 148 (172)
Q Consensus 71 d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~ 148 (172)
=|+++..+.....-|..-..+..+|||++||+|.=+.+++... +.+.|+++|+++.-+....+... ..++ .+...
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~---r~G~~nv~v~ 169 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS---RCGVSNVALT 169 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEE
Confidence 3556666655544332112466899999999999988887632 34689999999999998876442 3344 35556
Q ss_pred EccCCCCC-CCCCccceEE
Q 030736 149 VGDEEFLP-LKERFGDQLL 166 (172)
Q Consensus 149 ~~D~e~Lp-f~~~sfDlVv 166 (172)
..|...++ ..++.||.|+
T Consensus 170 ~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 170 HFDGRVFGAALPETFDAIL 188 (470)
T ss_pred eCchhhhhhhchhhcCeEE
Confidence 67776653 3346899998
No 209
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.14 E-value=0.0012 Score=52.12 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC
Q 030736 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE 152 (172)
Q Consensus 75 ~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~ 152 (172)
+.|-+.+...|....-...++|||=||||.++.....+| ..+|+.+|.++..+...++.... .+. ....+..|.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~---l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEK---LGLEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHH---HT-GGGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHH---hCCCcceeeeccCH
Confidence 344444444444321235789999999999988666554 57999999999999988765432 222 345566663
Q ss_pred C-CCC---CCCCccceEEE
Q 030736 153 E-FLP---LKERFGDQLLG 167 (172)
Q Consensus 153 e-~Lp---f~~~sfDlVvS 167 (172)
. .++ -....||+|+.
T Consensus 102 ~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE
T ss_pred HHHHHhhcccCCCceEEEE
Confidence 2 332 24688999975
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=97.13 E-value=0.0032 Score=52.49 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=52.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh-hh-hccCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ-QD-AHNDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~-~~-~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
....+||-+|.|.|..++.+.+.. .+|++||+++++++.+++.. .. ....++.+..+.. ...-..++||+||.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~---~~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh---hhhccCCcCCEEEE
Confidence 445899999999999999999843 49999999999999998722 11 1122333443431 11112378999997
Q ss_pred ccC
Q 030736 168 ASL 170 (172)
Q Consensus 168 ~~~ 170 (172)
=++
T Consensus 146 Ds~ 148 (262)
T PRK00536 146 LQE 148 (262)
T ss_pred cCC
Confidence 643
No 211
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.03 E-value=0.0012 Score=52.59 Aligned_cols=99 Identities=15% Similarity=-0.002 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcH----HHHHHhh---c-CC-CcEEEEEeCCHHHHHHHHHhhhhhc
Q 030736 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA----VRRLLRG---R-GG-IEKLIMMDTSYDMLKLCKDAQQDAH 139 (172)
Q Consensus 69 ~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~----l~~~L~~---~-~~-~~~v~~vD~S~~mL~~a~~~~~~~~ 139 (172)
+.+.+.+.+...++++... ...-+|...||+||. ++..|.+ . .+ .-+|+|+|+|+.+|+.|++-.....
T Consensus 11 ~f~~l~~~vlp~~~~~~~~--~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 11 QFEALRDEVLPPLLARARP--GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp HHHHHHHHHH-------CS---S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHhhccccCC--CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 3456666665444332211 134689999999994 4444444 1 11 2389999999999999976432110
Q ss_pred -cCC-----------------------C--ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 140 -NDN-----------------------I--ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 140 -~~~-----------------------~--~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+ + .+.|...|.-..+...+.||+|+|..
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRN 144 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRN 144 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-S
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecC
Confidence 000 0 24566666655344568899999864
No 212
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.82 E-value=0.0015 Score=50.58 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD 126 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~ 126 (172)
...+||||||++|.++..+.+++ ...+|+++|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34789999999999999999865 3579999999875
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.015 Score=47.17 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..+++|||+|.|.=+..|+=..+..+|+.+|....=+.--+... ...+. ++..+++.+|.+.-...-||+|+|--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~---~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVK---KELGLENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHH---HHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence 47999999999976666552234557999999875444333221 12344 48889999998874322299999853
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.78 E-value=0.0062 Score=48.94 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=48.6
Q ss_pred EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCCCCCCccceEEEc
Q 030736 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLPLKERFGDQLLGA 168 (172)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~Lpf~~~sfDlVvS~ 168 (172)
|.|+||-=|++...|.+++...+++++|+++.-|+.|++.... .+. .+....+|. +.++.. +..|.|+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~---~~l~~~i~~rlgdGL~~l~~~-e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK---YGLEDRIEVRLGDGLEVLKPG-EDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH---TT-TTTEEEEE-SGGGG--GG-G---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH---cCCcccEEEEECCcccccCCC-CCCCEEEEe
Confidence 6899999999999999988888999999999999999876532 232 577788884 444322 236777654
No 215
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.78 E-value=0.0085 Score=49.61 Aligned_cols=73 Identities=14% Similarity=-0.007 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
+..+|+|||||.--++..+....+...|+|+|++..+++...... ...++.....+.|...-+ ++...|+.+-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l---~~l~~~~~~~v~Dl~~~~-~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFL---AVLGVPHDARVRDLLSDP-PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHH---HHTT-CEEEEEE-TTTSH-TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHH---HhhCCCcceeEeeeeccC-CCCCcchhhH
Confidence 357999999999988877765444569999999999999875432 123445556666755443 3467787653
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.75 E-value=0.0035 Score=52.86 Aligned_cols=76 Identities=11% Similarity=-0.017 Sum_probs=49.9
Q ss_pred CeEEEEcCCCcH----HHHHHhhcC----CCcEEEEEeCCHHHHHHHHHhhhhhc--------------------c----
Q 030736 93 PTALCLGGSLEA----VRRLLRGRG----GIEKLIMMDTSYDMLKLCKDAQQDAH--------------------N---- 140 (172)
Q Consensus 93 ~~vLDlGcGtG~----l~~~L~~~~----~~~~v~~vD~S~~mL~~a~~~~~~~~--------------------~---- 140 (172)
-+|...||+||. ++..|.+.. ..-+|+|+|+|+.+|+.|++-..... .
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999994 444444421 12379999999999999986532100 0
Q ss_pred ---CCC--ceeEEEccCCCCCCC-CCccceEEEc
Q 030736 141 ---DNI--ETCFVVGDEEFLPLK-ERFGDQLLGA 168 (172)
Q Consensus 141 ---~~~--~~~~~~~D~e~Lpf~-~~sfDlVvS~ 168 (172)
+.+ .+.|...|.-..|++ .+.||+|+|.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR 230 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR 230 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHh
Confidence 001 255666676654443 5789999994
No 217
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0014 Score=55.05 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=51.0
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
...++|+|||.|-... . .+.-.++|+|+|..++..++. .+.. ...++|+-++|+++.+||.++|..
T Consensus 46 gsv~~d~gCGngky~~---~-~p~~~~ig~D~c~~l~~~ak~-------~~~~-~~~~ad~l~~p~~~~s~d~~lsia 111 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG---V-NPLCLIIGCDLCTGLLGGAKR-------SGGD-NVCRADALKLPFREESFDAALSIA 111 (293)
T ss_pred cceeeecccCCcccCc---C-CCcceeeecchhhhhcccccc-------CCCc-eeehhhhhcCCCCCCccccchhhh
Confidence 4679999999995432 2 133579999999999999863 2221 457899999999999999998864
No 218
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0084 Score=48.28 Aligned_cols=70 Identities=16% Similarity=-0.008 Sum_probs=49.0
Q ss_pred hccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CC
Q 030736 88 CRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LK 158 (172)
Q Consensus 88 i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--------f~ 158 (172)
+-++...|+|||+-+|.+++.+++.. ....|+++|+-|- .+...+.++.+|...-+ +.
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------------~~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------------KPIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------------ccCCCceEEeeeccCccHHHHHHHHcC
Confidence 34557899999999999999887643 2345999999651 22234777888765432 33
Q ss_pred CCccceEEEccC
Q 030736 159 ERFGDQLLGASL 170 (172)
Q Consensus 159 ~~sfDlVvS~~~ 170 (172)
...+|+|+|=|+
T Consensus 109 ~~~~DvV~sD~a 120 (205)
T COG0293 109 GAPVDVVLSDMA 120 (205)
T ss_pred CCCcceEEecCC
Confidence 445799998765
No 219
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0011 Score=54.57 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHHHHHhHhhh-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030736 68 RPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (172)
Q Consensus 68 ~~~d~l~~eva~~l~~rL~~i-~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (172)
...+++.+..+.- ..+ .+...+|||...|-|+.+..-.++| ..+|+-++-++..|+.|.-.+-.-.-..+.+.
T Consensus 115 ~~tdP~~Dt~~Kv-----~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~ 188 (287)
T COG2521 115 KGTDPLEDTLAKV-----ELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIK 188 (287)
T ss_pred cCcCcHHHHHhhh-----heeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccE
Confidence 3467777665432 222 2356899999999999998888765 23999999999999998643211001112456
Q ss_pred EEEccCCCC--CCCCCccceEEE
Q 030736 147 FVVGDEEFL--PLKERFGDQLLG 167 (172)
Q Consensus 147 ~~~~D~e~L--pf~~~sfDlVvS 167 (172)
.+.||+..+ .|+|+|||+|+-
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred EecccHHHHHhcCCccccceEee
Confidence 688987655 588999999984
No 220
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.52 E-value=0.0058 Score=53.70 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-C---CCCCccceEEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P---LKERFGDQLLG 167 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-p---f~~~sfDlVvS 167 (172)
..+|||+=|-||.++.+.+.. ...+||.||+|...|+.+++...-+........|+++|+-.+ . =....||+||.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 578999999999999988864 345999999999999999876532111122467889886432 2 22358999984
No 221
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.51 E-value=0.00035 Score=56.71 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
...++||+|+|.|.++..+++ ..++|++.++|..|..+.+.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p--~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP--TFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc--hHHHHHHHHhhHHHHHHHhhc
Confidence 346899999999999999987 457899999999999998754
No 222
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.49 E-value=0.011 Score=51.14 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=63.6
Q ss_pred hhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccc
Q 030736 86 EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERFGD 163 (172)
Q Consensus 86 ~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf~~~sfD 163 (172)
.....+..+|||+=||-|.++..++..+... |+++|+.|..++...+... ...+ .+..++||...++.+-+.+|
T Consensus 183 a~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~---LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 183 AELVKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIR---LNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HhhhcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHH---hcCccceeeEEeccHHHhhhccccCC
Confidence 3334457899999999999999999866544 9999999999998876543 2222 36679999988887668999
Q ss_pred eEEEccC
Q 030736 164 QLLGASL 170 (172)
Q Consensus 164 lVvS~~~ 170 (172)
-|+.++-
T Consensus 259 rIim~~p 265 (341)
T COG2520 259 RIIMGLP 265 (341)
T ss_pred EEEeCCC
Confidence 9998874
No 223
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.44 E-value=0.013 Score=52.52 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=59.7
Q ss_pred cCCC-eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 90 KTFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 90 r~~~-~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+.. ++|-+|||.-.+..++-+. ....|+-+|.|+-.++..... + ........+...|...+.|+++|||.|+--
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~--~-~~~~~~~~~~~~d~~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVR--N-AKERPEMQMVEMDMDQLVFEDESFDIVIDK 121 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhc--c-ccCCcceEEEEecchhccCCCcceeEEEec
Confidence 3444 8999999999999998874 357899999999888776432 1 122335777889999999999999999864
Q ss_pred cC
Q 030736 169 SL 170 (172)
Q Consensus 169 ~~ 170 (172)
.+
T Consensus 122 Gt 123 (482)
T KOG2352|consen 122 GT 123 (482)
T ss_pred Cc
Confidence 43
No 224
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.36 E-value=0.0069 Score=51.10 Aligned_cols=75 Identities=21% Similarity=0.115 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CC-C-CCCccceEEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-L-KERFGDQLLG 167 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-Lp-f-~~~sfDlVvS 167 (172)
..+|||+=|-||.++.+.+. +...+|+.||.|...|+.+++...-+....-.+.++.+|+-. +. + ..+.||+||.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 47999999999999987765 345689999999999999987543111111256778887643 22 1 2468999986
No 225
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.34 E-value=0.013 Score=51.20 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh----hhh-ccCCCceeEEEccCCCC-CCCCCccce
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ----QDA-HNDNIETCFVVGDEEFL-PLKERFGDQ 164 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~----~~~-~~~~~~~~~~~~D~e~L-pf~~~sfDl 164 (172)
...+||-+|.|.|.-.+.|.+...+++|+.+|++|+|++.+++.. .|. ...++.+..+..|+-++ --..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 346899999999999999998555899999999999999987322 111 11223455566665443 223468999
Q ss_pred EEEccCC
Q 030736 165 LLGASLD 171 (172)
Q Consensus 165 VvS~~~~ 171 (172)
||--+-|
T Consensus 369 vIVDl~D 375 (508)
T COG4262 369 VIVDLPD 375 (508)
T ss_pred EEEeCCC
Confidence 9876654
No 226
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.30 E-value=0.029 Score=47.67 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=42.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEc-cCCC----CCCCCCccceE
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVG-DEEF----LPLKERFGDQL 165 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~-D~e~----Lpf~~~sfDlV 165 (172)
-++||||+|+..+-..|..+...=+++|.|+++..++.|++.... ++.+ .+..+.. +... +-.+++.||+.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~--N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVER--NPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHH--T-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHh--ccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 479999999998877775321224899999999999999876542 2122 3444332 2222 22234689999
Q ss_pred EEc
Q 030736 166 LGA 168 (172)
Q Consensus 166 vS~ 168 (172)
+||
T Consensus 182 mCN 184 (299)
T PF05971_consen 182 MCN 184 (299)
T ss_dssp EE-
T ss_pred ecC
Confidence 987
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.22 E-value=0.0076 Score=52.62 Aligned_cols=72 Identities=7% Similarity=-0.101 Sum_probs=51.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEE
Q 030736 93 PTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERFGDQLLG 167 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lpf-~~~sfDlVvS 167 (172)
.+|||+-||+|..+..++.+. ...+|+++|++++.++..++.... .+. .+..+.+|+..+-. ....||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~---N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY---NSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 479999999999999888653 457999999999999998765421 122 35566777664421 2356888864
No 228
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.09 E-value=0.011 Score=47.41 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|||+|+|+|..+..-+..| ...|+..|+.+......+- |+...+..+.++..|.-. .+..||+|+..
T Consensus 80 gkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~l---Na~angv~i~~~~~d~~g---~~~~~Dl~Lag 149 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRL---NAAANGVSILFTHADLIG---SPPAFDLLLAG 149 (218)
T ss_pred cceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhc---chhhccceeEEeeccccC---CCcceeEEEee
Confidence 4789999999999888777654 4689999999888777653 223344556556555332 67889999864
No 229
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.02 E-value=0.042 Score=46.84 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=55.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERFGDQ 164 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~~~sfDl 164 (172)
.+...++|.=+|.|.-+..+.+..+.++|+|+|.++.++..+++.... ..-.+.++.++...++ ...+++|.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~~l~~~~~~~vDg 95 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFEHLDELLVTKIDG 95 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHHHHHhcCCCcccE
Confidence 345789999999999999998754348999999999999999865321 1124666777665542 13357888
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
|+..+
T Consensus 96 Il~DL 100 (305)
T TIGR00006 96 ILVDL 100 (305)
T ss_pred EEEec
Confidence 87654
No 230
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.95 E-value=0.026 Score=45.30 Aligned_cols=80 Identities=11% Similarity=0.029 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh----c---cCCCceeEEEccCCCCCCCC---C
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----H---NDNIETCFVVGDEEFLPLKE---R 160 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~----~---~~~~~~~~~~~D~e~Lpf~~---~ 160 (172)
+....+|||||.|......+-..+..+.+|||+.+...+.+......- . ....++.+..+|.-+.++.+ .
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 457899999999998766654346678999999999888775432110 0 11224555666644333211 3
Q ss_pred ccceEEEccC
Q 030736 161 FGDQLLGASL 170 (172)
Q Consensus 161 sfDlVvS~~~ 170 (172)
.-|+|++|.+
T Consensus 122 ~AdvVf~Nn~ 131 (205)
T PF08123_consen 122 DADVVFVNNT 131 (205)
T ss_dssp C-SEEEE--T
T ss_pred CCCEEEEecc
Confidence 4688888754
No 231
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.025 Score=45.32 Aligned_cols=70 Identities=16% Similarity=0.043 Sum_probs=46.1
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc-cCCCC--------CCC
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFL--------PLK 158 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~-D~e~L--------pf~ 158 (172)
.++..+|||+||.+|.+++...++ ++.+.|.|+|+-+ .. +...+..+.+ |..+- .++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~---------p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IE---------PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----cc---------CCCCcccccccccCCHHHHHHHHHhCC
Confidence 456789999999999999877654 3678999999842 11 1112233333 22211 235
Q ss_pred CCccceEEEccCC
Q 030736 159 ERFGDQLLGASLD 171 (172)
Q Consensus 159 ~~sfDlVvS~~~~ 171 (172)
+..+|+|+|-|.-
T Consensus 134 ~r~VdvVlSDMap 146 (232)
T KOG4589|consen 134 NRPVDVVLSDMAP 146 (232)
T ss_pred CCcccEEEeccCC
Confidence 6889999998863
No 232
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.85 E-value=0.04 Score=45.18 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEE
Q 030736 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFV 148 (172)
Q Consensus 71 d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~ 148 (172)
.+--+.++..++.+..... ..+.|+|.-||.|..+..++-++ ..|+++|++|.-+..|++.+ ..-++ .++|+
T Consensus 75 svTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNa---eiYGI~~rItFI 148 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNA---EVYGVPDRITFI 148 (263)
T ss_pred EeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccc---eeecCCceeEEE
Confidence 3444556666666665554 34789999999988888887755 58999999999999998643 23344 58899
Q ss_pred EccCCC----CCCCCCccceEE
Q 030736 149 VGDEEF----LPLKERFGDQLL 166 (172)
Q Consensus 149 ~~D~e~----Lpf~~~sfDlVv 166 (172)
+||.-. |-|...-+|+|.
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred echHHHHHHHHhhhhheeeeee
Confidence 998543 234333455554
No 233
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.82 E-value=0.039 Score=45.20 Aligned_cols=43 Identities=9% Similarity=-0.026 Sum_probs=31.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--------CCcEEEEEeCCHHHHHHHHHhh
Q 030736 93 PTALCLGGSLEAVRRLLRGRG--------GIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--------~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
-+|+|+|+|+|.++..+.... ..-+++.+|+|+.|.++-++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 589999999999988776411 1248999999999988876654
No 234
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.53 E-value=0.02 Score=49.93 Aligned_cols=77 Identities=17% Similarity=0.077 Sum_probs=58.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
.+...++|+|||-|...+.+.. .....++|+|.++.-+.++.....+..... .-.++.+|.-..||+++.||.|.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcceehhhhhcCCCCccccCcEEEE
Confidence 3445799999999999988875 345789999999999999876543211111 2334889999999999999999764
No 235
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.13 Score=40.90 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030736 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG 150 (172)
Q Consensus 71 d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~ 150 (172)
.+-.+.|-+.+...|..-.-...++||+=+|+|.++..-..+| ...++.+|.+.......++.... .........+..
T Consensus 23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~-l~~~~~~~~~~~ 100 (187)
T COG0742 23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKA-LGLEGEARVLRN 100 (187)
T ss_pred CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHH-hCCccceEEEee
Confidence 3334444455544443200134789999999999987766554 57999999999999998865432 111134555666
Q ss_pred cCCCC-CCCC--CccceEEE
Q 030736 151 DEEFL-PLKE--RFGDQLLG 167 (172)
Q Consensus 151 D~e~L-pf~~--~sfDlVvS 167 (172)
|+... +-.. +.||+|+.
T Consensus 101 da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 101 DALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cHHHHHHhcCCCCcccEEEe
Confidence 76633 2122 35999974
No 236
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.18 E-value=0.15 Score=41.57 Aligned_cols=78 Identities=13% Similarity=-0.005 Sum_probs=56.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCC-ccceEEEc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKER-FGDQLLGA 168 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~-sfDlVvS~ 168 (172)
+++..+.|+||==+++...|.+.++...+++.|++++.++.|...... ......+....+|. ..+++.+ .+|.|+-+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIA 92 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDG-LAVLELEDEIDVIVIA 92 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCC-ccccCccCCcCEEEEe
Confidence 344569999999999999999888889999999999999999754321 11112355566776 4456554 78888755
Q ss_pred c
Q 030736 169 S 169 (172)
Q Consensus 169 ~ 169 (172)
.
T Consensus 93 G 93 (226)
T COG2384 93 G 93 (226)
T ss_pred C
Confidence 3
No 237
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.91 E-value=0.084 Score=43.67 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=58.3
Q ss_pred cCCChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--c
Q 030736 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--E 144 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~ 144 (172)
++.+||++ .+++.|.+--..+....-++||||.|.--+-..+--+...-+.+|.|+++..++.|+..... ++++ .
T Consensus 55 PgRAdYih-~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~--N~~l~~~ 131 (292)
T COG3129 55 PGRADYIH-HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISA--NPGLERA 131 (292)
T ss_pred CChhHHHH-HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHc--Ccchhhh
Confidence 45678877 34444433222233344679999999887777664322334899999999999998754421 2222 1
Q ss_pred eeEEE-ccCCCC----CCCCCccceEEEc
Q 030736 145 TCFVV-GDEEFL----PLKERFGDQLLGA 168 (172)
Q Consensus 145 ~~~~~-~D~e~L----pf~~~sfDlVvS~ 168 (172)
+.... -|-..+ --.++.||+++||
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCN 160 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCN 160 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecC
Confidence 22222 222221 1235789999887
No 238
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.87 E-value=0.091 Score=43.75 Aligned_cols=66 Identities=18% Similarity=0.092 Sum_probs=48.8
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC--CCccceEEEc
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ERFGDQLLGA 168 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~--~~sfDlVvS~ 168 (172)
+++||-||.|.+...|...+ ...++++|.++..++..+... .. ..+.+|.+.+... ...+|+|+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~-----~~---~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF-----PN---KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC-----CC---CCccCccccCchhhcCCCCCEEEeC
Confidence 58999999999999988765 668899999999998876421 11 1356677666432 3569999865
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.2 Score=43.46 Aligned_cols=76 Identities=17% Similarity=0.016 Sum_probs=52.6
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCcc
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERFG 162 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~--~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp---f~~~sf 162 (172)
..+..+|||+.+++|.=+.++++... ...|+++|.|+.=+...++... ..++ .+..++.|...++ ...+.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~---RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK---RLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH---HcCCCceEEEecccccccccccccCcC
Confidence 34568999999999988888876432 2456999999988888776442 3444 3455677766554 222359
Q ss_pred ceEEE
Q 030736 163 DQLLG 167 (172)
Q Consensus 163 DlVvS 167 (172)
|.|+.
T Consensus 231 D~iLl 235 (355)
T COG0144 231 DRILL 235 (355)
T ss_pred cEEEE
Confidence 99874
No 240
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.66 E-value=0.55 Score=39.96 Aligned_cols=75 Identities=9% Similarity=-0.039 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeEEEccCCC---CCCCCCccce
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEF---LPLKERFGDQ 164 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~--~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~-~~~~~~D~e~---Lpf~~~sfDl 164 (172)
.-+||||.||.|..........+ ...|...|.|+.-++..++... ..++ . +.|.++|+-+ +.--+-..++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~---~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIA---ERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHH---HcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 46899999999976444433223 3689999999999999987653 3444 3 4788887543 2211234567
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
++.+.
T Consensus 213 ~iVsG 217 (311)
T PF12147_consen 213 AIVSG 217 (311)
T ss_pred EEEec
Confidence 76653
No 241
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.58 E-value=0.26 Score=40.35 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=55.7
Q ss_pred cCCChHHHHHHHHHHHHhHhhh-ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCH----HHHHHHHHhhhhhcc
Q 030736 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSY----DMLKLCKDAQQDAHN 140 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i-~r~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~~vD~S~----~mL~~a~~~~~~~~~ 140 (172)
|+.-++.+..+|.-+..-+..+ -.+..+||.||+.+|....++.. .++.+.|++++.|+ +++..|+++
T Consensus 48 YR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------ 121 (229)
T PF01269_consen 48 YRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------ 121 (229)
T ss_dssp EEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------
T ss_pred eeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------
Confidence 4444556666766665544433 24567999999999988888875 23456999999999 556666532
Q ss_pred CCCceeEEEccCCCC---CCCCCccceEEEcc
Q 030736 141 DNIETCFVVGDEEFL---PLKERFGDQLLGAS 169 (172)
Q Consensus 141 ~~~~~~~~~~D~e~L---pf~~~sfDlVvS~~ 169 (172)
.++..+.+|+..- ..--+.+|+|++-.
T Consensus 122 --~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 122 --PNIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp --TTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred --CceeeeeccCCChHHhhcccccccEEEecC
Confidence 2355577776532 11135899988753
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.045 Score=45.08 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=34.8
Q ss_pred hccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030736 88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (172)
Q Consensus 88 i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~ 130 (172)
+......+||+|+.||.++..+.+++ ..+|+++|...+-|.-
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~ 117 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHW 117 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCH
Confidence 34456789999999999999999864 5799999999866654
No 243
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.23 E-value=0.36 Score=39.66 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCC-----CCCCcc
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLP-----LKERFG 162 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~Lp-----f~~~sf 162 (172)
..++||||.=||+-+..++... ..++|+++|+.++-.+.+.+... ..+. .+.++++++ |.|+ .+.++|
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k---~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK---LAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH---hccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 4789999999998766665422 35799999999999998865442 2333 577888754 3332 356899
Q ss_pred ceEEE
Q 030736 163 DQLLG 167 (172)
Q Consensus 163 DlVvS 167 (172)
|+|+-
T Consensus 151 DfaFv 155 (237)
T KOG1663|consen 151 DFAFV 155 (237)
T ss_pred eEEEE
Confidence 99874
No 244
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.18 E-value=0.097 Score=43.91 Aligned_cols=93 Identities=16% Similarity=0.045 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF 147 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~ 147 (172)
+=|++++.+......|. ..+...|||+.+++|.=+.++++.. ..+.|+++|+++.-+....+... ..+. .+..
T Consensus 66 ~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~---r~g~~~v~~ 140 (283)
T PF01189_consen 66 LFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLK---RLGVFNVIV 140 (283)
T ss_dssp SEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHH---HTT-SSEEE
T ss_pred cEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHH---hcCCceEEE
Confidence 34445555444443332 3456789999999999888887643 35799999999998888765432 2333 3444
Q ss_pred EEccCCCC-C-CCCCccceEEE
Q 030736 148 VVGDEEFL-P-LKERFGDQLLG 167 (172)
Q Consensus 148 ~~~D~e~L-p-f~~~sfDlVvS 167 (172)
+..|...+ + .....||.|+.
T Consensus 141 ~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 141 INADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp EESHHHHHHHHHHTTTEEEEEE
T ss_pred Eeeccccccccccccccchhhc
Confidence 44565544 2 22345999875
No 245
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.99 E-value=0.09 Score=38.31 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT 123 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~ 123 (172)
++..-.|||||.|.+.-.|...| ..-+|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG--YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC--CCcccccc
Confidence 56789999999999998888755 45678886
No 246
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.96 E-value=0.25 Score=41.35 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCcH----HHHHHhhcCC-----CcEEEEEeCCHHHHHHHHHh
Q 030736 92 FPTALCLGGSLEA----VRRLLRGRGG-----IEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 92 ~~~vLDlGcGtG~----l~~~L~~~~~-----~~~v~~vD~S~~mL~~a~~~ 134 (172)
.-+|.-.||+||. ++..|.+.++ .-+|++.|+|..+|+.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 4689999999993 5555555332 34899999999999999754
No 247
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.32 Score=42.42 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhHhhhccCC-CeEEEEcCCCcHHHHHHhhc--------CCCcEEEEEeCCHHHHHHHHHhh
Q 030736 71 DSFVDAVAENLLDRLEDCRKTF-PTALCLGGSLEAVRRLLRGR--------GGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 71 d~l~~eva~~l~~rL~~i~r~~-~~vLDlGcGtG~l~~~L~~~--------~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+.+-+|..+...+..+.++. -.++|+|+|+|.++..+... ....++..|++|+++..+=++..
T Consensus 56 ~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 56 QLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 3444556666666666665543 46999999999998777542 13568999999999988765543
No 248
>PRK10742 putative methyltransferase; Provisional
Probab=93.54 E-value=0.39 Score=39.88 Aligned_cols=73 Identities=10% Similarity=-0.004 Sum_probs=49.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc-----cCCC--ceeEEEccCCCC-CCCCCccce
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-----NDNI--ETCFVVGDEEFL-PLKERFGDQ 164 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~-----~~~~--~~~~~~~D~e~L-pf~~~sfDl 164 (172)
++|||+=+|+|..+..++.+| .+|+++|-++.+....++...... ...+ .+..+.+|...+ .-..++||+
T Consensus 90 p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred CEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 589999999999999999865 579999999988777665432110 0111 355566765433 222347999
Q ss_pred EEE
Q 030736 165 LLG 167 (172)
Q Consensus 165 VvS 167 (172)
|+.
T Consensus 168 VYl 170 (250)
T PRK10742 168 VYL 170 (250)
T ss_pred EEE
Confidence 974
No 249
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.43 E-value=0.24 Score=41.58 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=34.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
+...+||-=|||.|.++-.++..| ..+.|.|.|--|+-...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASN 95 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHH
Confidence 345789999999999999999865 58999999999976543
No 250
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.04 E-value=0.35 Score=42.64 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
-+.|+|+|+|.|++++.|.-.+ .-.|.+||.|....++|+..
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence 4689999999999999998643 35899999999888887644
No 251
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.47 E-value=0.49 Score=40.44 Aligned_cols=75 Identities=16% Similarity=-0.002 Sum_probs=47.0
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-CCCccc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-KERFGD 163 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-~~~sfD 163 (172)
.+...++|.=-|.|..+..+.+..+..+|+|+|.++++++.+.+... ...-.+.++.++..+++ . ....+|
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~---~~~~r~~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK---KFDDRFIFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC---CCCTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh---hccceEEEEeccHHHHHHHHHHccCCCccC
Confidence 45678999999999999999876555899999999999999976432 11224666666554442 2 234566
Q ss_pred eEEE
Q 030736 164 QLLG 167 (172)
Q Consensus 164 lVvS 167 (172)
-|+.
T Consensus 96 giL~ 99 (310)
T PF01795_consen 96 GILF 99 (310)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.41 E-value=0.15 Score=41.36 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=36.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~ 136 (172)
-...|||||-|.+...|++.++..-|+|+++=-..-+..++++.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ 105 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQ 105 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHH
Confidence 45899999999999999998888889999998777776665543
No 253
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.38 E-value=0.83 Score=38.45 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCcHHHHHH-hhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 92 FPTALCLGGSLEAVRRLL-RGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L-~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
..+|+=||||+=-++..+ ++. +....++++|++++.++.+++...........+.|+.+|+...+..-..||+|+-.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 358999999976665444 432 23457999999999999998654210112335788999987777655789988754
No 254
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.13 E-value=0.5 Score=38.33 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=61.1
Q ss_pred cCCChHHHHHHHHHHHHhHhhh-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030736 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i-~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~ 145 (172)
|+.-++.+..+|.-++.-|..+ .++..+||-||+.+|....++..--+.+.+++++.|+.+....-+.. ....++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a----~~R~Ni 126 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA----EKRPNI 126 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH----HhCCCc
Confidence 4445566667776666555432 34668999999999998888876333568999999986655432221 112234
Q ss_pred eEEEccCCCC---CCCCCccceEEE
Q 030736 146 CFVVGDEEFL---PLKERFGDQLLG 167 (172)
Q Consensus 146 ~~~~~D~e~L---pf~~~sfDlVvS 167 (172)
..+.+|+..- -+--+.+|+|+.
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred eeeecccCCcHHhhhhcccccEEEE
Confidence 5567775432 122356888775
No 255
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.08 E-value=0.96 Score=38.28 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=53.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCC--CCCccce
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPL--KERFGDQ 164 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lpf--~~~sfDl 164 (172)
++..+|||-|.|+|.++-.+++. ++.++++-.|.-+.--+.|.+... ..++ .+.+.+-|.-...| ++..+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr---~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR---EHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH---HhCCCcceEEEEeecccCCccccccccce
Confidence 56789999999999999888763 466899999998888887776532 2223 45555555544433 4567888
Q ss_pred EEE
Q 030736 165 LLG 167 (172)
Q Consensus 165 VvS 167 (172)
|+-
T Consensus 181 VFL 183 (314)
T KOG2915|consen 181 VFL 183 (314)
T ss_pred EEE
Confidence 864
No 256
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=91.05 E-value=1 Score=36.99 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=42.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCC------ceeEEEccCC-CCCCCCCccce
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNI------ETCFVVGDEE-FLPLKERFGDQ 164 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~-~~~~~------~~~~~~~D~e-~Lpf~~~sfDl 164 (172)
++|||.=+|-|.=+..++..| .+|+++|-||-+-...++-.... ..... .++.+.+|.. .|+.++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 589999999998887777654 58999999997655543221110 12222 4777888764 46777899999
Q ss_pred EEE
Q 030736 165 LLG 167 (172)
Q Consensus 165 VvS 167 (172)
|+.
T Consensus 155 VY~ 157 (234)
T PF04445_consen 155 VYF 157 (234)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 257
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.97 E-value=0.5 Score=38.67 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCcHHHHHHh--hcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 91 TFPTALCLGGSLEAVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~--~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
..-++-|-.||.|++...|. ....+..|++.|+++++|+.|++.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 34578999999999876653 334578999999999999998754
No 258
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.81 E-value=0.59 Score=38.05 Aligned_cols=58 Identities=14% Similarity=-0.024 Sum_probs=37.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC---CCccceEEEcc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---ERFGDQLLGAS 169 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~---~~sfDlVvS~~ 169 (172)
-++|||||=+......-. ..-+|+.||+.+. .++ + ...|.-..|+| ++.||+|++++
T Consensus 53 lrlLEVGals~~N~~s~~---~~fdvt~IDLns~-------------~~~--I--~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS---GWFDVTRIDLNSQ-------------HPG--I--LQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEeecccCCCCccccc---CceeeEEeecCCC-------------CCC--c--eeeccccCCCCCCcccceeEEEEEE
Confidence 589999987554333222 3346999999651 111 2 45565556653 68999999987
Q ss_pred C
Q 030736 170 L 170 (172)
Q Consensus 170 ~ 170 (172)
+
T Consensus 113 V 113 (219)
T PF11968_consen 113 V 113 (219)
T ss_pred E
Confidence 4
No 259
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.71 E-value=0.49 Score=39.38 Aligned_cols=66 Identities=11% Similarity=0.047 Sum_probs=43.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-----CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL 157 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~-----~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf 157 (172)
.+...++|+|||.|.++..+.... ....++.||....=........ + ....+.+..+..|+++|.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~-~-~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIR-K-DESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhh-c-cCCCCceEEEEEEeeccch
Confidence 345689999999999999998643 3458999999654334333211 0 0111457778888887754
No 260
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.56 E-value=1.2 Score=34.52 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=32.6
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..+.+.|||.=||+|..+.+....+ .+.+|+|++++..+.|.
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhc
Confidence 4567899999999999888777654 58999999999998875
No 261
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.99 E-value=1 Score=40.56 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=35.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
-.|||+|.|||.++-.....+ ...+++++.=..|.+.+++.-
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~ 109 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIM 109 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHH
Confidence 469999999999988877765 468999999999999998654
No 262
>PHA01634 hypothetical protein
Probab=89.80 E-value=0.89 Score=34.44 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 69 ~~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
+.+|+++-.-+- ..+.-...+|+|+|++-|.-+..+.-+| .+.|+++++++.+.+..++.
T Consensus 11 ~c~ywrey~~~Y-----~~idvk~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 11 ECDYWREYPHAY-----GMLNVYQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred cchHHHHHHHHh-----hheeecCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHH
Confidence 466777654321 1122234799999999999888887654 57999999999999998764
No 263
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=89.58 E-value=0.69 Score=38.47 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
..++||||||+-.. ..|.-.....+|+..|.++.-++..
T Consensus 57 g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 57 GETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREEL 95 (256)
T ss_dssp EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHH
Confidence 46899999999644 3443222457999999998776643
No 264
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=87.80 E-value=1.8 Score=35.86 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
.+.+||++|+|+|..+...+-. ....|+..|...-+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLK 125 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHH
Confidence 3467999999999766665542 236899999887655544
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=87.11 E-value=0.14 Score=35.88 Aligned_cols=67 Identities=21% Similarity=0.107 Sum_probs=19.1
Q ss_pred EEEcCCCcHHHHHHhhcCC---CcEEEEEeCCHH---HHHHHHHhhhhhccCCCceeEEEccCCCC-C-CCCCccceEEE
Q 030736 96 LCLGGSLEAVRRLLRGRGG---IEKLIMMDTSYD---MLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKERFGDQLLG 167 (172)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~---~~~v~~vD~S~~---mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-p-f~~~sfDlVvS 167 (172)
||+|+..|..+..+++..+ ..+++++|..+. .-+..++. .....+.++.++.... + ++.++||+|+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999988877765221 137999999995 22222211 1112477777775432 2 33578888874
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=87.03 E-value=0.6 Score=41.11 Aligned_cols=20 Identities=15% Similarity=-0.227 Sum_probs=14.9
Q ss_pred cCCCCCCCCCccceEEEccC
Q 030736 151 DEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 151 D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+...=-||++|.+++.|+++
T Consensus 152 SFY~RLfP~~Slh~~~Ss~s 171 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFS 171 (386)
T ss_pred cccccccCCCceEEEEeecc
Confidence 33333589999999999864
No 267
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=1.9 Score=33.60 Aligned_cols=43 Identities=7% Similarity=-0.010 Sum_probs=34.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
++..+.+|||+|.|.+-..-++.+ ...-+|+++.+-++..++-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHH
Confidence 445799999999999877776644 4578999999999887763
No 268
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.96 E-value=4.8 Score=34.46 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=46.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L 155 (172)
++....+|.--|.|..++.+.+..+ .++++++|-++.+++.|++... .....+.++.+...++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~---~~~~r~~~v~~~F~~l 85 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK---EFDGRVTLVHGNFANL 85 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh---ccCCcEEEEeCcHHHH
Confidence 4558899999999999999987554 4679999999999999987542 1122466666644433
No 269
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=85.73 E-value=3 Score=37.70 Aligned_cols=95 Identities=12% Similarity=-0.068 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcC---C-CcEEEEEeCCHHHHHHHHHhhhhhccCCCc-
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG---G-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIE- 144 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~---~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~- 144 (172)
.-|.-.+|.+-|++.|.. .+..+|.|--||+|.+........ . ...++|.|+.+.++..++-... -.++.
T Consensus 167 EfyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~---lhgi~~ 241 (489)
T COG0286 167 EFYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI---LHGIEG 241 (489)
T ss_pred ccCChHHHHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH---HhCCCc
Confidence 445555666666665543 234589999999997655443311 1 2468999999999999974321 12222
Q ss_pred -eeEEEccCCCCC-----CCCCccceEEEcc
Q 030736 145 -TCFVVGDEEFLP-----LKERFGDQLLGAS 169 (172)
Q Consensus 145 -~~~~~~D~e~Lp-----f~~~sfDlVvS~~ 169 (172)
.....+|.-.-| +..+.||.|++|-
T Consensus 242 ~~~i~~~dtl~~~~~~~~~~~~~~D~viaNP 272 (489)
T COG0286 242 DANIRHGDTLSNPKHDDKDDKGKFDFVIANP 272 (489)
T ss_pred cccccccccccCCcccccCCccceeEEEeCC
Confidence 222333322222 2346799999873
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.01 E-value=3.4 Score=35.77 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=45.2
Q ss_pred cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc-cCCCCCCCCCccceEEE
Q 030736 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKERFGDQLLG 167 (172)
Q Consensus 90 r~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~-D~e~Lpf~~~sfDlVvS 167 (172)
++...|+-+|+| -|+++..++..-. .+|+++|.|++=++.+++. +. ..++.+ |.+.++--.+.||+|+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l-------GA-d~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL-------GA-DHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh-------CC-cEEEEcCCchhhHHhHhhCcEEEE
Confidence 456788888887 3466777776322 8999999999999988753 11 222332 23333222234999987
Q ss_pred cc
Q 030736 168 AS 169 (172)
Q Consensus 168 ~~ 169 (172)
+-
T Consensus 236 tv 237 (339)
T COG1064 236 TV 237 (339)
T ss_pred CC
Confidence 64
No 271
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.94 E-value=2.1 Score=36.78 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||.+|||+ |.++..+++.....+++++|.++++++.+++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 457899999988 8888888775444579999999999999875
No 272
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.49 E-value=2.4 Score=39.00 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHHHhHhhhcc-CCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030736 70 NDSFVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE 144 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r-~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~ 144 (172)
++..++.|-..|.||..+-.. ....|+-+|+|.|-+.....+ ...--++++++-.|+.+--.....+ ..-.-.
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~--~~W~~~ 422 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF--ECWDNR 422 (649)
T ss_pred HHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch--hhhcCe
Confidence 344555666777787665422 245688999999987765532 1122378999999987665543211 011225
Q ss_pred eeEEEccCCCCCCCCCccceEEEcc
Q 030736 145 TCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 145 ~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
++.+..|+..++-+.+..|++||-+
T Consensus 423 Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 423 VTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEeccccccCCchhhccchHHHh
Confidence 7778899999985558999999854
No 273
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.47 E-value=3 Score=36.65 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=42.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEE---EeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIM---MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~---vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp 156 (172)
....++|||-|.++.++......+.++. +|-...-+....... + .....+..+..|+++|-
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~-~--~~~~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLR-N--KNSLVIKRIRIDIEDLK 247 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhh-c--cCcchhheeEeeHHhcC
Confidence 5799999999999999986545555555 888777666665332 1 12245667778887764
No 274
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=84.34 E-value=9 Score=31.71 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCCCC-CCccceEEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLK-ERFGDQLLG 167 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~Lpf~-~~sfDlVvS 167 (172)
..+||-+|-+.- .+.+++-.+..++|+.+|+++.+++.-.+.+. ..++++..+..|.. .||-+ -++||++++
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~---~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAE---EEGLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH---HHT--EEEE---TTS---TTTSS-BSEEEE
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH---HcCCceEEEEecccccCCHHHhcCCCEEEe
Confidence 468999996544 33333333355899999999999998765432 34556777777764 33321 379999986
No 275
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=83.59 E-value=3.3 Score=37.02 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=51.2
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccc
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERFGD 163 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~Lp---f~~~sfD 163 (172)
+++..+|||+.+-+|.=+.+++. ....+.|++.|.+.+-+....... ..-++ .+..+..|...+| |+. +||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~---~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANL---HRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHH---HHhCCCceEEEccCcccccccccCc-ccc
Confidence 45678999999999966555543 124568999999998888776543 23444 3444567776665 554 899
Q ss_pred eEE
Q 030736 164 QLL 166 (172)
Q Consensus 164 lVv 166 (172)
-|+
T Consensus 315 RVL 317 (460)
T KOG1122|consen 315 RVL 317 (460)
T ss_pred eee
Confidence 886
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=83.47 E-value=5.5 Score=33.14 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+.+.|||-=||+|..+.+-...+ .+++|+|++++-.+.+.++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence 4677899999999998877666644 58999999999999987653
No 277
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.54 E-value=2.1 Score=36.20 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=28.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~ 129 (172)
-..++|||+|||+|.-.......+ ...+...|.+.+.+.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 345789999999998776665432 256778888877763
No 278
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=82.45 E-value=6.4 Score=34.19 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=38.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~ 152 (172)
+...+|+|.|.|.++..+...+ .+|-+++.....+-.++... . ..+..+-+|.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~----~--~gV~~v~gdm 230 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYL----A--PGVEHVAGDM 230 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhh----c--CCcceecccc
Confidence 5789999999999999998744 46889999887777665321 0 2255566664
No 279
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=82.34 E-value=2 Score=35.37 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=47.1
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC---CCCCccceEEEc
Q 030736 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKERFGDQLLGA 168 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp---f~~~sfDlVvS~ 168 (172)
+++||=||.|.+...|...+ ...++++|+++...+.-+... . ....+|...+. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~-----~----~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF-----P----EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH-----T----EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc-----c----ccccccccccccccccc-cceEEEec
Confidence 68999999999999998865 678999999999887765421 1 45677777664 444 58988764
No 280
>PRK13699 putative methylase; Provisional
Probab=81.88 E-value=7.6 Score=31.45 Aligned_cols=45 Identities=7% Similarity=-0.090 Sum_probs=36.9
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+.+.|||-=||+|..+.+....+ .+++|+|++++..+.+.+..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHH
Confidence 3567899999999998887776644 58999999999999887654
No 281
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=81.79 E-value=2.1 Score=36.62 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCCC--CCCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEFL--PLKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~L--pf~~~sfDlVv 166 (172)
.+++||-+|-|.|-+.+.......++.++.+|+....++...+-... ..-.+.++....||.-.+ -.+.+.||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 45789999999999988887766788999999999998887642211 122344566677875433 23468999999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
.-.+|
T Consensus 201 ~dssd 205 (337)
T KOG1562|consen 201 TDSSD 205 (337)
T ss_pred EecCC
Confidence 77665
No 282
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.48 E-value=3.7 Score=30.19 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=23.1
Q ss_pred EEcCCCc--HHHHHHh--hcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 97 CLGGSLE--AVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 97 DlGcGtG--~l~~~L~--~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
|+|++.| .....+. ..++..+|+++|+++.+.+..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5444432 334567899999999998877654
No 283
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.64 E-value=1.3 Score=38.99 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=43.1
Q ss_pred CeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCC-CCccceEEE
Q 030736 93 PTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLK-ERFGDQLLG 167 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~-~~~~v~~vD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~Lpf~-~~sfDlVvS 167 (172)
.+|||+|.|+|...-++-.-. ....++.++.|+.+-++......|..... ....-++.| .+|++ .+.|++|+.
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d--Rl~lp~ad~ytl~i~ 191 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED--RLSLPAADLYTLAIV 191 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh--ccCCCccceeehhhh
Confidence 579999999997655543322 23578999999998888766544321111 111113333 44443 356777764
No 284
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.28 E-value=22 Score=30.97 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccce
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQ 164 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDl 164 (172)
...+++=+|+ |.++..+.+.. ....++.+|.+++.++..++. ......+.+|..... ..-+.+|+
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~-------~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE-------LPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------CCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 3467888877 56666665421 235899999999988877542 112445777764321 22357889
Q ss_pred EEEccCC
Q 030736 165 LLGASLD 171 (172)
Q Consensus 165 VvS~~~~ 171 (172)
|++.+.|
T Consensus 301 vi~~~~~ 307 (453)
T PRK09496 301 FIALTND 307 (453)
T ss_pred EEECCCC
Confidence 9887664
No 285
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.48 E-value=3.8 Score=34.72 Aligned_cols=65 Identities=17% Similarity=0.071 Sum_probs=44.6
Q ss_pred EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC-CCccceEEEc
Q 030736 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ERFGDQLLGA 168 (172)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~-~~sfDlVvS~ 168 (172)
|+||=||.|.+...|...| ...+.++|+++...+.-+... .. ..+.+|.+.+... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~-----~~---~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANF-----GN---KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhC-----CC---CCCccChhhhhhhhCCCcCEEEec
Confidence 5899999999999998755 566789999998888765421 11 2345666655421 1247888754
No 286
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.71 E-value=5.8 Score=34.00 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=34.7
Q ss_pred CeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 93 PTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 93 ~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
.+|+-+|||+ |.++..+++.....+|+.+|.+++=|+.|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 4899999997 7777777766566899999999999999975
No 287
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.12 E-value=5.1 Score=34.73 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
...+||-+|+|+ |.++...++.....+|+.+|++++-|+.|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 457999999997 5555555565566799999999999999986
No 288
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.01 E-value=7.2 Score=27.25 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=39.9
Q ss_pred CCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEEEccCC
Q 030736 100 GSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQLLGASLD 171 (172)
Q Consensus 100 cGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDlVvS~~~~ 171 (172)
||.|.++..+.+.. ...+|+.+|.+++-.+.+++ .+ ..++.||..+.. ..-+..|.|++...|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------EG--VEVIYGDATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------TT--SEEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------cc--cccccccchhhhHHhhcCccccCEEEEccCC
Confidence 45567776665411 22489999999999888864 22 456778876542 223578888877644
No 289
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=77.66 E-value=5.9 Score=33.23 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=47.9
Q ss_pred cCCChHHHHHHHHHHHHhHhhh-ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCH----HHHHHHH
Q 030736 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSY----DMLKLCK 132 (172)
Q Consensus 67 ~~~~d~l~~eva~~l~~rL~~i-~r~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~~vD~S~----~mL~~a~ 132 (172)
|+.-++++..+|.-++--+.++ .++..+||-||+++|..-.++.. .++.+-|++++.|+ +++..|.
T Consensus 131 yRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk 202 (317)
T KOG1596|consen 131 YRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK 202 (317)
T ss_pred EEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh
Confidence 5555777888887776655554 45678999999999987777764 34567899999997 4555554
No 290
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=77.61 E-value=6.9 Score=30.24 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S 124 (172)
..-|||+|=|.|..-.+|.+..+...|+.+|-.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 367999999999999999988788899999975
No 291
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=77.59 E-value=4.8 Score=36.39 Aligned_cols=79 Identities=18% Similarity=0.043 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCcHHHHHH--hhcCCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCCceeEEEccCCCCCCCC-CccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDEEFLPLKE-RFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L--~~~~~~~~v~~vD~S~~mL~~a~~~~~~~-~~~~~~~~~~~~D~e~Lpf~~-~sfDlVv 166 (172)
.++.+.|+|.|.|.-...+ ..+.....++.||.|..|+........+. ....+.+.-++.-...+|... +.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4567899999888644333 22334578999999999999987544321 011111211333445677655 4599999
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
+..
T Consensus 280 ~ah 282 (491)
T KOG2539|consen 280 CAH 282 (491)
T ss_pred eee
Confidence 874
No 292
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.54 E-value=12 Score=31.04 Aligned_cols=73 Identities=11% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHH-HHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030736 53 RHLKRKQRDRAAWLTRPNDSFVDAV-AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 53 r~~k~~qr~Raa~~~~~~d~l~~ev-a~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~ 129 (172)
|..+...|-+|++.. ..+||.|+- -..++.....+. ..-|.++|.|.|.+++.+.+.+ ...+..++.++..+.
T Consensus 14 Re~i~lYRLqA~K~L-SQNfLMD~~lT~KIvK~A~~~~--~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip 87 (326)
T KOG0821|consen 14 REIIKLYRLQAAKQL-SQNFLMDLRLTDKIVKKAGNLT--NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIP 87 (326)
T ss_pred HHHHHHHHHHHHHHH-hHhHHhhhHHHHHHHHhccccc--cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccCh
Confidence 334444455555431 245666552 223322222222 2458999999999999998753 457777777764433
No 293
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.04 E-value=7 Score=34.36 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=33.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.+.++||-|.+|.++....|.. ..++|++||++|.-+...+
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHHHHH
Confidence 3567999999888888777776 4489999999998777664
No 294
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=75.64 E-value=5.6 Score=30.13 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=34.2
Q ss_pred EEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC--CCCCccceEEEcc
Q 030736 117 KLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP--LKERFGDQLLGAS 169 (172)
Q Consensus 117 ~v~~vD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~Lp--f~~~sfDlVvS~~ 169 (172)
+|+++|+-++.++..+++... .+. .+.++..+-|.+. .+++.+|+|+-|+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~---~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL 54 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE---AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL 54 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH---TT-GSGEEEEES-GGGGGGT--S--EEEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHh---cCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC
Confidence 589999999999999877643 222 5888888777775 3335899999886
No 295
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.48 E-value=16 Score=30.88 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030736 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e 153 (172)
..+.+|+|+|+..=++.|. +++....++.+|+|...|........ ..-+++++.-+++|-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~-~~y~~l~v~~l~~~~~ 143 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAIL-REYPGLEVNALCGDYE 143 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHH-HhCCCCeEeehhhhHH
Confidence 3679999999997666554 45555789999999999986543221 0124445655666644
No 296
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.28 E-value=10 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=24.0
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+||=+|||. | .++..|+.. .+++++.+|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 6799999994 3 456777665 47899999987
No 297
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.48 E-value=17 Score=32.09 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=43.6
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceE
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERFGDQL 165 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~--~~sfDlV 165 (172)
++||=||| |.++...+ ++ ...+|+..|.|.+-++++.+.. ..++...+.|+...+ +. =..+|+|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHHhcCCEE
Confidence 46999999 45555443 33 3379999999998888876421 114555666665542 10 1445999
Q ss_pred EEcc
Q 030736 166 LGAS 169 (172)
Q Consensus 166 vS~~ 169 (172)
|++.
T Consensus 73 In~~ 76 (389)
T COG1748 73 INAA 76 (389)
T ss_pred EEeC
Confidence 9875
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.86 E-value=12 Score=31.35 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|||. |.++..++......+|+++|.+++-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 457898888742 2334444443334579999999999988865
No 299
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.23 E-value=32 Score=27.40 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=23.9
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+|+=+|||. | .++..|... .+++++.+|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 5799999984 3 466677664 47899999998
No 300
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=71.21 E-value=42 Score=27.81 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-C-CCCCCccceEEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKERFGDQLLG 167 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-L-pf~~~sfDlVvS 167 (172)
...+||.+|-|-|.+...+.+..+. +=+.|+..++.+++-++..- ...-++..+.+-=|+ + .+++++||=|+-
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCcceeEe
Confidence 4579999999999998888876544 45668999999999875210 111123333343222 2 256788998763
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=69.71 E-value=26 Score=28.66 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||..|+|. |..+..++.... .+|++++.+++..+.+++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH
Confidence 456888888763 666666665433 469999999999888754
No 302
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=69.10 E-value=8.3 Score=33.41 Aligned_cols=75 Identities=25% Similarity=0.156 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhHhh--hccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 55 LKRKQRDRAAWLTRPNDSFVDAVAENLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 55 ~k~~qr~Raa~~~~~~d~l~~eva~~l~~rL~~--i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
++..-|+|.+.-..+-+.+..-+.++|...... ..+....||-=|||.|.++-.|+..| -.+-|-+.|.-|+=..
T Consensus 112 l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G--~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 112 LKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG--FKCQGNEFSYFMLICS 188 (369)
T ss_pred HHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc--ccccccHHHHHHHHHH
Confidence 445556655422222344444444443322211 12335689999999999999999865 3566778888877543
No 303
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.29 E-value=22 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=22.7
Q ss_pred eEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCCH
Q 030736 94 TALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSY 125 (172)
Q Consensus 94 ~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S~ 125 (172)
+|+=+|||. | .++..|+.. .+++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 478899983 4 456677664 468899999885
No 304
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=67.67 E-value=34 Score=27.55 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=42.3
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEEE
Q 030736 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQLLG 167 (172)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDlVvS 167 (172)
+++=+|||. +.+++.|.+.+ ..|+.+|.+++-++.... .......+++|..+.. ..-..+|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~-------~~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLA-------DELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhh-------hhcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 466777763 23444444433 589999999998888432 1223555677665431 23367999887
Q ss_pred ccCC
Q 030736 168 ASLD 171 (172)
Q Consensus 168 ~~~~ 171 (172)
...+
T Consensus 73 ~t~~ 76 (225)
T COG0569 73 ATGN 76 (225)
T ss_pred eeCC
Confidence 7654
No 305
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.79 E-value=17 Score=31.19 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=24.3
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCH
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSY 125 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~ 125 (172)
.+||-+|||. +.++..|+.. .+++++.+|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 6799999994 3456666665 468999999975
No 306
>PTZ00357 methyltransferase; Provisional
Probab=66.79 E-value=25 Score=33.92 Aligned_cols=75 Identities=8% Similarity=0.041 Sum_probs=44.3
Q ss_pred eEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--------CceeEEEccCCCCCCCC--
Q 030736 94 TALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--------IETCFVVGDEEFLPLKE-- 159 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~--------~~~~~~~~D~e~Lpf~~-- 159 (172)
.|+-+|+|-|-+.....+ .+..-+|++||-.+.-.-.......+ ...+ -.++.+..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N-~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAN-DPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhc-ccccccccccCCCeEEEEeCccccccccccc
Confidence 589999999977544432 22224899999995421111111101 0111 23677889988774332
Q ss_pred ---------CccceEEEcc
Q 030736 160 ---------RFGDQLLGAS 169 (172)
Q Consensus 160 ---------~sfDlVvS~~ 169 (172)
+.+|+|||=+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL 800 (1072)
T ss_pred ccccccccccccceehHhh
Confidence 3699999954
No 307
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=66.20 E-value=16 Score=30.66 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030736 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (172)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~ 154 (172)
....||||||-- +.-.......+..+|+-+|..|-.+..++..... ...-.+.++.+|...
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~--~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD--NPRGRTAYVQADLRD 132 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC--CCCccEEEEeCCCCC
Confidence 356899999954 4333323333568999999999999988765421 111136678887654
No 308
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=66.16 E-value=20 Score=29.66 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||..|||. |..+..+++.....++++++.+++..+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 457888888775 5566556654334479999999998887653
No 309
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.95 E-value=19 Score=32.79 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=43.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030736 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQLL 166 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDlVv 166 (172)
.+++=+||| .+++.+++.. ...+++.+|.+++.++.+++ . ....+.+|..+-. ..-+..|.|+
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-------~--g~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-------R--GIRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-------C--CCeEEEcCCCCHHHHHhcCccccCEEE
Confidence 467776666 5555555421 22579999999999888864 2 2445778776531 2235788777
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
....|
T Consensus 487 v~~~~ 491 (558)
T PRK10669 487 LTIPN 491 (558)
T ss_pred EEcCC
Confidence 76554
No 310
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=63.88 E-value=48 Score=24.13 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 91 TFPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 91 ~~~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
...+|+-+|||. ..+...|...+ ...|+.+|.+++-.+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~ 59 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKAL 59 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHH
Confidence 347899999862 12334444432 46899999998766554
No 311
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=63.61 E-value=19 Score=33.31 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=43.7
Q ss_pred CeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030736 93 PTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQLL 166 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~--~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDlVv 166 (172)
++|+=+|+| .+++.+++. ....+++.+|.+++.++.+++ .+ ...+.||..+.. ..-+..|+|+
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-------~g--~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK-------YG--YKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-------CC--CeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 456666554 666555431 122589999999999988864 22 334778776542 2235788888
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
++..|
T Consensus 470 ~~~~d 474 (601)
T PRK03659 470 ITCNE 474 (601)
T ss_pred EEeCC
Confidence 88766
No 312
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=62.09 E-value=25 Score=29.85 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=46.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEEEc
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERFGDQLLGA 168 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf---~~~sfDlVvS~ 168 (172)
.+++||=||.|.+..-+...+ ..-+.++|+++..++.-+... + ....+..|...+.- +...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~-----~--~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF-----P--HGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC-----C--CCceeechHhhcChhhccccCCCEEEeC
Confidence 579999999999998888765 567899999999888765421 1 12334455443321 11278998864
No 313
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.66 E-value=48 Score=26.99 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=40.4
Q ss_pred ccCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 89 ~r~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
...+..||-+|.- +|.+...+.. ...+|+.+|+.|.|-...+. .+.|..+ +-+..+.+|+|+-
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls--~~~~vtv~Di~p~~r~~lp~----------~v~Fr~~----~~~~~G~~DlivD 105 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLS--KADKVTVVDIHPFMRGFLPN----------NVKFRNL----LKFIRGEVDLIVD 105 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhc--ccceEEEecCCHHHHhcCCC----------CccHhhh----cCCCCCceeEEEe
Confidence 3457889999975 6766555543 24689999999988766431 1333222 4455677787764
No 314
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=60.35 E-value=6 Score=35.83 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
....+|-+|-|.|.+...|.-..+...++++++.|+|++.+.+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q 337 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQ 337 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHh
Confidence 3467999999999998888765566799999999999999875
No 315
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=60.26 E-value=14 Score=32.43 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=43.1
Q ss_pred CeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCCC-CCCCccceE
Q 030736 93 PTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFLP-LKERFGDQL 165 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~Lp-f~~~sfDlV 165 (172)
-++||.=+|+|.=+..++.. ....+|++-|+|++.++..+.... ..++ .+.....|+..+- ...+.||+|
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~---~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE---LNGLEDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH---HCT-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh---hccccCceEEEehhhHHHHhhhccccCCEE
Confidence 47999999999876666544 456799999999999998876432 1222 1334445554332 245667776
No 316
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.72 E-value=23 Score=33.05 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=44.6
Q ss_pred CeEEEEcCCCc-H-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030736 93 PTALCLGGSLE-A-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQLL 166 (172)
Q Consensus 93 ~~vLDlGcGtG-~-l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDlVv 166 (172)
++|+=+|||.= . +++.|.+.+ .+++.+|.+++.++.+++ .+ ...+.||..+.. ..-+..|+|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~-------~g--~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRK-------FG--MKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh-------cC--CeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 57888877742 1 233444422 479999999999988864 22 334778776553 2235788999
Q ss_pred EccCC
Q 030736 167 GASLD 171 (172)
Q Consensus 167 S~~~~ 171 (172)
++..|
T Consensus 470 v~~~d 474 (621)
T PRK03562 470 NAIDD 474 (621)
T ss_pred EEeCC
Confidence 88766
No 317
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=59.20 E-value=34 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 92 ~~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
+.+|.=||+|. +.++..|...+...+|+++|.+++-++.+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR 48 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 46789998875 345555555443348999999998777765
No 318
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.13 E-value=37 Score=28.97 Aligned_cols=72 Identities=15% Similarity=0.014 Sum_probs=48.0
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
.+.+...|+|+-+|..+-.|.+++ -.|+++|.-+ |-...- ....++.+..|.-.+-......|-.+|-|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~-ma~sL~--------dtg~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGP-MAQSLM--------DTGQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc--eEEEEeccch-hhhhhh--------cccceeeeeccCcccccCCCCCceEEeeh
Confidence 356889999999999999998854 5899999754 222221 11134445566544432456788888887
Q ss_pred CCC
Q 030736 170 LDK 172 (172)
Q Consensus 170 ~~~ 172 (172)
..|
T Consensus 279 VEk 281 (358)
T COG2933 279 VEK 281 (358)
T ss_pred hcC
Confidence 654
No 319
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=58.75 E-value=9.9 Score=35.78 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCH
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSY 125 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~-~~v~~vD~S~ 125 (172)
...||||||.+|.+....++.-++ .-|+|||+-|
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 467999999999988877654333 5789999865
No 320
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.73 E-value=59 Score=28.32 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=42.6
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEEE
Q 030736 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQLLG 167 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDlVvS 167 (172)
+|+=+|+ |.++..+.+.. ....|+.+|.+++-++..++. .....+.+|..... ..-+.+|.|++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4666766 67777776421 225899999999887776431 12455667764321 12356888888
Q ss_pred ccCC
Q 030736 168 ASLD 171 (172)
Q Consensus 168 ~~~~ 171 (172)
+..|
T Consensus 72 ~~~~ 75 (453)
T PRK09496 72 VTDS 75 (453)
T ss_pred ecCC
Confidence 7654
No 321
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.22 E-value=4.1 Score=32.14 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=30.9
Q ss_pred CeEEEEcCCCcHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 93 PTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 93 ~~vLDlGcGtG~l-~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
..||++|.|--.+ +..++...+...|+..|-.++.+...++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki 73 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKI 73 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHH
Confidence 4699999984444 44445444678999999999998887654
No 322
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=57.53 E-value=3.7 Score=29.37 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=11.6
Q ss_pred EEEEcCCCcHHHHHH
Q 030736 95 ALCLGGSLEAVRRLL 109 (172)
Q Consensus 95 vLDlGcGtG~l~~~L 109 (172)
-+|||||.|+....-
T Consensus 6 NIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAA 20 (124)
T ss_pred ccccccCCCcchhhh
Confidence 479999999865544
No 323
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=56.61 E-value=41 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=23.7
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+||-+|||. | .++..|+.. .+++++.+|.+
T Consensus 25 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 6799999983 3 456666665 47899999987
No 324
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.61 E-value=63 Score=25.08 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
.++|-.|++ |.++..++ +.+ .+|+.+|.+++-++...+... ..+..+.++..|..+.. +.
T Consensus 6 ~~~lItG~~-g~iG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 6 KVIVITGGA-QGLGRAMAEYLAQKG--AKLALIDLNQEKLEEAVAECG---ALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578988864 44444443 433 579999999876655433221 11223445566643321 00
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+.+|.|+.+.
T Consensus 80 ~~~id~vi~~a 90 (253)
T PRK08217 80 FGQLNGLINNA 90 (253)
T ss_pred cCCCCEEEECC
Confidence 13578888764
No 325
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=56.59 E-value=67 Score=27.45 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=20.5
Q ss_pred eEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 94 TALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 94 ~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
+||=+|||. | .++..|+.. ++++++.+|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GFGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cCCeEEEEcCC
Confidence 478889873 2 345666554 47899999965
No 326
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=56.33 E-value=32 Score=29.82 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=23.6
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+||=+|||. | .++..|+.. .+++++.+|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 5799999983 4 456667665 47899999987
No 327
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.01 E-value=23 Score=31.20 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
..+|||-=+|||.=+..++...+..++++-|+||+..+..++..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv 96 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENV 96 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHH
Confidence 46799999999987766654333338999999999999987654
No 328
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=53.80 E-value=11 Score=32.39 Aligned_cols=79 Identities=14% Similarity=-0.098 Sum_probs=35.9
Q ss_pred CCeEEEEcCCCcHHHHHHhh--------c---C-----CCcEEEEEeCCHHH-HHHHHHhhhhh-ccCCCceeEE---Ec
Q 030736 92 FPTALCLGGSLEAVRRLLRG--------R---G-----GIEKLIMMDTSYDM-LKLCKDAQQDA-HNDNIETCFV---VG 150 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~--------~---~-----~~~~v~~vD~S~~m-L~~a~~~~~~~-~~~~~~~~~~---~~ 150 (172)
.-+|+|+||.+|..+..+.. . . +.-.|+-.|+=.+= -...+...... ........|+ -+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 35899999999987765532 1 0 11367888875321 11111111000 0000122233 35
Q ss_pred cCCCCCCCCCccceEEEccC
Q 030736 151 DEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 151 D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+...=-||++|.|+++|+++
T Consensus 97 SFy~rLfP~~Svh~~~Ss~a 116 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYA 116 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-
T ss_pred hhhhccCCCCceEEEEEech
Confidence 55555689999999999875
No 329
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=53.77 E-value=39 Score=27.27 Aligned_cols=60 Identities=17% Similarity=0.048 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030736 92 FPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~ 154 (172)
+..|+|+|.-.|.-+..++. .+..++|+++|+...-.++..-.. ......++++.||.-.
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~---hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES---HPMSPRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-------TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh---ccccCceEEEECCCCC
Confidence 47899999998865554432 235579999999654444322100 0111357788887543
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=52.43 E-value=79 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=29.3
Q ss_pred CCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
...+||-+|+| .|..+..++.... .+|+.++.+++.++..++
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARK 204 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 44688889886 5555555554322 479999999998888753
No 331
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=52.37 E-value=90 Score=25.50 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-+|+|. |..+..++.......++.++.+++..+.+++
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 457899998642 4444555554333458999999998887743
No 332
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=51.44 E-value=61 Score=27.54 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=40.1
Q ss_pred EEEEcCCCcHHHHHHhhc---CCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCC--ceeEEEccCCCC-----CCCCCccc
Q 030736 95 ALCLGGSLEAVRRLLRGR---GGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNI--ETCFVVGDEEFL-----PLKERFGD 163 (172)
Q Consensus 95 vLDlGcGtG~l~~~L~~~---~~~~~v~~vD~S~~mL~~a~~~~~~~-~~~~~--~~~~~~~D~e~L-----pf~~~sfD 163 (172)
||--| |+|.++..|+++ ...++++.+|.++.-+..-....... ....+ .+..+.+|..+- -|.....|
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 34445 789998888752 34578999999998888776543110 01122 223356776543 25666888
Q ss_pred eEEEccC
Q 030736 164 QLLGASL 170 (172)
Q Consensus 164 lVvS~~~ 170 (172)
+|+-.-+
T Consensus 80 iVfHaAA 86 (293)
T PF02719_consen 80 IVFHAAA 86 (293)
T ss_dssp EEEE---
T ss_pred EEEEChh
Confidence 8886543
No 333
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=51.09 E-value=77 Score=26.39 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHH
Q 030736 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYD 126 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~ 126 (172)
..++|-+|+| | .++.+ ... ...+|+.++.+++
T Consensus 126 ~k~vlI~GAG-G-agrAia~~La~~-G~~~V~I~~R~~~ 161 (289)
T PRK12548 126 GKKLTVIGAG-G-AATAIQVQCALD-GAKEITIFNIKDD 161 (289)
T ss_pred CCEEEEECCc-H-HHHHHHHHHHHC-CCCEEEEEeCCch
Confidence 3579999987 5 33333 333 3457999999863
No 334
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=50.86 E-value=41 Score=29.15 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
...+|.-+|+|..++...|.. ....|.++|+.+.-|...+
T Consensus 63 ~ghrivtigSGGcn~L~ylsr--~Pa~id~VDlN~ahiAln~ 102 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSR--APARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCcEEEEecCCcchHHHHhhc--CCceeEEEeCCHHHHHHHH
Confidence 446899999999999988887 3479999999998776654
No 335
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=50.62 E-value=1.3e+02 Score=24.15 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHhHhhhccC--CCeEEEEcCCCcHH-------HHHHhhcCCCcEEEEEe
Q 030736 69 PNDSFVDAVAENLLDRLEDCRKT--FPTALCLGGSLEAV-------RRLLRGRGGIEKLIMMD 122 (172)
Q Consensus 69 ~~d~l~~eva~~l~~rL~~i~r~--~~~vLDlGcGtG~l-------~~~L~~~~~~~~v~~vD 122 (172)
....|.+..+..+.+.+...-.. ..+|+-+ ||+|+. +++|...+..-.|+.+-
T Consensus 24 ~~~~LMEnAG~aVa~~i~~~~~~~~~~~v~vl-cG~GnNGGDG~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 24 PLDILMENAGLAVARAILREYPLGRARRVLVL-CGPGNNGGDGLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccCCEEEEE-ECCCCccHHHHHHHHHHHhCCCceEEEEeC
Confidence 35666666666666555432222 3456666 888864 57777655222444433
No 336
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=49.81 E-value=32 Score=27.24 Aligned_cols=37 Identities=30% Similarity=0.205 Sum_probs=26.4
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCC---HHHHHH
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTS---YDMLKL 130 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S---~~mL~~ 130 (172)
.+|+-+|||. +.++..|+.. .+++++.+|.+ +.-|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~ve~sNL~R 63 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA-GIGKLILVDFDVVEPSNLNR 63 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCEEccccccc
Confidence 6799999984 2456666654 46799999999 544443
No 337
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=49.59 E-value=91 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred eEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 94 TALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 94 ~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
+||=+|||. | .+...|+.. ++++++.+|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEECCC
Confidence 478889882 2 345555554 47889998865
No 338
>PRK05854 short chain dehydrogenase; Provisional
Probab=49.52 E-value=1.4e+02 Score=24.74 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=42.7
Q ss_pred CCeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----------CC
Q 030736 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (172)
Q Consensus 92 ~~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----------f~ 158 (172)
..++|-.|++.|. ++..|++.+ .+|+.++.+++-++.+.+.... ...+..+.++..|...+. -.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAVAAIRT-AVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 3678888877662 444555544 6899999887765554332211 112234566667765432 01
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
.+..|++|.|-
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 24578888764
No 339
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=48.81 E-value=44 Score=28.06 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-+|+|+ |.++..++.... .+|+++|.+++-++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH
Confidence 457899999855 555555555433 379999999998888864
No 340
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.42 E-value=52 Score=25.60 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=31.1
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
.+..+||.+|+|+ |.....++.... .+|++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH
Confidence 3567899999986 555555554322 689999999988777653
No 341
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=46.71 E-value=66 Score=27.57 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceEEE
Q 030736 95 ALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERFGDQLLG 167 (172)
Q Consensus 95 vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~--~~sfDlVvS 167 (172)
||=||+ |.++..+ .+.....+|+..|.+.+-++...+. .....+.++..|..+.. +. -...|+||+
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK-----LLGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh-----ccccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 577887 6665544 4444444899999999887776531 02335667777766543 11 134599998
Q ss_pred cc
Q 030736 168 AS 169 (172)
Q Consensus 168 ~~ 169 (172)
+.
T Consensus 74 ~~ 75 (386)
T PF03435_consen 74 CA 75 (386)
T ss_dssp -S
T ss_pred CC
Confidence 75
No 342
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=46.59 E-value=15 Score=32.12 Aligned_cols=44 Identities=9% Similarity=-0.158 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030736 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~ 135 (172)
+-.+||.||+.+.....+++..++-+--|+++..+.+..+....
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~ 224 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKK 224 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccC
Confidence 35799999999999999998777777889999999999886543
No 343
>PRK10458 DNA cytosine methylase; Provisional
Probab=46.38 E-value=1e+02 Score=27.84 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=32.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.+++||=||.|.+...|...| ...|.++|.++...+.-+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHH
Confidence 489999999999999998754 467889999998777654
No 344
>PRK05650 short chain dehydrogenase; Provisional
Probab=46.26 E-value=84 Score=25.05 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=36.8
Q ss_pred eEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030736 94 TALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~~ 159 (172)
+||-.|+.. .++..+ .+.+ .+|+.++.+++-++...+... ..+..+.++.+|..+.. + .-
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREG--WRLALADVNEEGGEETLKLLR---EAGGDGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 577777544 444444 4433 578888888765554432211 12223445566654321 0 01
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|.||.+.
T Consensus 76 ~~id~lI~~a 85 (270)
T PRK05650 76 GGIDVIVNNA 85 (270)
T ss_pred CCCCEEEECC
Confidence 3578887764
No 345
>PRK09291 short chain dehydrogenase; Provisional
Probab=46.23 E-value=1.4e+02 Score=23.34 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=38.6
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccce
Q 030736 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERFGDQ 164 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp----f~~~sfDl 164 (172)
.+||-.|++ |.++..+ .+.+ .+|++++.++.-+....+... ..+..+.++.+|..+.. ......|.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKG--HNVIAGVQIAPQVTALRAEAA---RRGLALRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCcceEEEeeCCCHHHHHHHhcCCCCE
Confidence 368888865 4454444 4433 588998887765544332211 12223555666654421 11236888
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
|+.+.
T Consensus 77 vi~~a 81 (257)
T PRK09291 77 LLNNA 81 (257)
T ss_pred EEECC
Confidence 88763
No 346
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.72 E-value=30 Score=28.87 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=43.1
Q ss_pred CeEEEEcCCCcHHHHHHhhcC------C---CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-------
Q 030736 93 PTALCLGGSLEAVRRLLRGRG------G---IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------- 156 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~------~---~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp------- 156 (172)
.+|+||.+.+|.++..|.++. . ..+|+++|+-+ |. +-..+..+.+|+.+..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma------------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA------------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC------------ccCceEEeecccCCHhHHHHHHH
Confidence 569999999999998887521 1 12499999843 11 1113555677776542
Q ss_pred -CCCCccceEEEccC
Q 030736 157 -LKERFGDQLLGASL 170 (172)
Q Consensus 157 -f~~~sfDlVvS~~~ 170 (172)
|..+.-|+|+|-.+
T Consensus 110 hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA 124 (294)
T ss_pred HhCCCCccEEEeCCC
Confidence 66678999998543
No 347
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=45.11 E-value=97 Score=27.44 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=26.8
Q ss_pred hccCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCC
Q 030736 88 CRKTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTS 124 (172)
Q Consensus 88 i~r~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S 124 (172)
+++..++||-.| |+|.++.+|.+.. ...+|+++|..
T Consensus 116 ~~~~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 116 IGRKRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred cccCCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356668999998 9999998887521 22589999964
No 348
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=44.90 E-value=57 Score=27.46 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=30.2
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
++..+||-.|||. |.++..+++.....+|+++|.+++-++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3457899988743 3444555554344469999999998888864
No 349
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=44.33 E-value=75 Score=26.56 Aligned_cols=67 Identities=21% Similarity=0.095 Sum_probs=39.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CC--CCccceE
Q 030736 93 PTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LK--ERFGDQL 165 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~---~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~Lp-f~--~~sfDlV 165 (172)
++||-.| |+|+++.+|.... ...+|+++|.+...+.... ....+.++.+|.. ... +. -...|.|
T Consensus 2 ~~ilVtG-atGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~~~~~d~V 72 (347)
T PRK11908 2 KKVLILG-VNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV--------NHPRMHFFEGDITINKEWIEYHVKKCDVI 72 (347)
T ss_pred cEEEEEC-CCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc--------cCCCeEEEeCCCCCCHHHHHHHHcCCCEE
Confidence 3688887 7899998886532 1248999998765332211 1123667778874 221 10 1247888
Q ss_pred EEc
Q 030736 166 LGA 168 (172)
Q Consensus 166 vS~ 168 (172)
+-+
T Consensus 73 iH~ 75 (347)
T PRK11908 73 LPL 75 (347)
T ss_pred EEC
Confidence 753
No 350
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=44.22 E-value=33 Score=32.50 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=25.4
Q ss_pred CCeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 92 ~~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
..+||=+|||+ | .+++.|+.. ++++++.+|.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D 371 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNG 371 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCC
Confidence 36899999997 5 567778765 47899999965
No 351
>PLN02427 UDP-apiose/xylose synthase
Probab=44.16 E-value=66 Score=27.41 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=42.0
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--C-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceEE
Q 030736 93 PTALCLGGSLEAVRRLLRGRG--G-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERFGDQLL 166 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~-~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~--~~sfDlVv 166 (172)
++||-.| |+|.++.+|.+.. . ..+|+++|.+.+-+........ ......++++.+|..+.. +. -..+|.||
T Consensus 15 ~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~--~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 15 LTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT--VPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred cEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc--ccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 5799888 8999988886521 1 2479999987643332211000 000124677888775432 11 12478887
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
-+.
T Consensus 92 HlA 94 (386)
T PLN02427 92 NLA 94 (386)
T ss_pred Ecc
Confidence 654
No 352
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=43.72 E-value=56 Score=28.60 Aligned_cols=67 Identities=9% Similarity=-0.120 Sum_probs=42.6
Q ss_pred CCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHH-HHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccc
Q 030736 92 FPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYD-MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGD 163 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~-mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfD 163 (172)
..++|-+| |+|.++++|.. ++...++..+|..+. +.-.+.... .....+.++.+|....+.-.+.++
T Consensus 4 ~~~vlVtG-G~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~----~~~~~v~~~~~D~~~~~~i~~a~~ 75 (361)
T KOG1430|consen 4 KLSVLVTG-GSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTG----FRSGRVTVILGDLLDANSISNAFQ 75 (361)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhc----ccCCceeEEecchhhhhhhhhhcc
Confidence 35788888 99999988864 333568999999987 444443211 012346667787777664444333
No 353
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=43.61 E-value=60 Score=27.57 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=30.3
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
++..+||-+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3457899998753 3444555554333479999999998888864
No 354
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=43.37 E-value=63 Score=26.65 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=28.1
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
.+|.-+|+|. +.++..++..+ .+|+.+|.+++.++.+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHH
Confidence 5688888873 34555666544 489999999999886543
No 355
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=43.20 E-value=1.3e+02 Score=27.11 Aligned_cols=64 Identities=8% Similarity=-0.030 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc---C-CCcEEEEEeCCHHHHHHHHH
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR---G-GIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~---~-~~~~v~~vD~S~~mL~~a~~ 133 (172)
.-|+-.+|+..+.+-+..+..+...+.|.-||+|.+....... + ....++|-+....|...+..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~m 263 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRM 263 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHH
Confidence 4455555555544322222223357999999999877543221 1 12468999999999998874
No 356
>PRK06194 hypothetical protein; Provisional
Probab=43.17 E-value=1.6e+02 Score=23.52 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=40.8
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
.++|=.|++ |.++.+++ +.+ .+|+.+|.+++.++...+... ..+..+.++.+|..+.. +.
T Consensus 7 k~vlVtGas-ggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 7 KVAVITGAA-SGFGLAFARIGAALG--MKLVLADVQQDALDRAVAELR---AQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CEEEEeCCc-cHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578888854 54555554 433 589999998877665543221 12334555667665431 00
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
.+.+|+|+.+-
T Consensus 81 ~g~id~vi~~A 91 (287)
T PRK06194 81 FGAVHLLFNNA 91 (287)
T ss_pred cCCCCEEEECC
Confidence 13478888764
No 357
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=43.00 E-value=56 Score=27.44 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=28.1
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhc-CCCcEEEEEeCCHHHHHHHH
Q 030736 90 KTFPTALCLGGSL-EAVRRLLRGR-GGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 90 r~~~~vLDlGcGt-G~l~~~L~~~-~~~~~v~~vD~S~~mL~~a~ 132 (172)
++.++||-+|||+ |.++..++.. ....+|+++|.+++-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 3567899999753 2233333432 22357999999998777775
No 358
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=43.00 E-value=86 Score=27.04 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 74 ~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..++++.+..|+.+...+.--++-+.-|+|.....|+..| .+|+++|=+-.|.+.-+
T Consensus 233 l~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG--~DVvgLDWTvdp~ear~ 289 (359)
T KOG2872|consen 233 LRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTG--YDVVGLDWTVDPAEARR 289 (359)
T ss_pred HHHHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHHHhcC--CcEEeecccccHHHHHH
Confidence 3467788888887764443335566789999999999865 68999999888877654
No 359
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=42.60 E-value=39 Score=29.53 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcH----HHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030736 93 PTALCLGGSLEA----VRRLLRGRGGIEKLIMMDTSYDMLKL 130 (172)
Q Consensus 93 ~~vLDlGcGtG~----l~~~L~~~~~~~~v~~vD~S~~mL~~ 130 (172)
..++-.|.|||. +++.|.++++.-+|+++|+.+..+-.
T Consensus 213 vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~ 254 (362)
T KOG1252|consen 213 VDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLS 254 (362)
T ss_pred CCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceecc
Confidence 458889999994 78899888877899999998765544
No 360
>PRK08339 short chain dehydrogenase; Provisional
Probab=42.52 E-value=1.8e+02 Score=23.29 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C----CC
Q 030736 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----KE 159 (172)
Q Consensus 92 ~~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f----~~ 159 (172)
..++|-.|++.|. ++..|.+.+ .+|+.+|.+++-++...+.... ..+..+.++.+|..+.. + .-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAG--ADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 3578989977662 445555544 5899999988766655432210 11223555666655431 1 11
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|+++.|.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4578887764
No 361
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=42.33 E-value=62 Score=25.75 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=29.6
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
.+..++|-.|+|. |..+..++......+|++++.+++.++.+++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 3457888888754 4455555543333349999999998887764
No 362
>PRK08267 short chain dehydrogenase; Provisional
Probab=42.22 E-value=1.6e+02 Score=23.14 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=40.1
Q ss_pred CeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 93 PTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
.++|-.|++. .++.. |.+.+ .+|+.++.+++-++...+.. .+..+.++.+|..+.. +.
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEG--WRVGAYDINEAGLAALAAEL-----GAGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHh-----cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3588888654 44444 44433 58999999887766654321 1223555666665431 11
Q ss_pred -CCccceEEEcc
Q 030736 159 -ERFGDQLLGAS 169 (172)
Q Consensus 159 -~~sfDlVvS~~ 169 (172)
.+.+|.|+.+.
T Consensus 74 ~~~~id~vi~~a 85 (260)
T PRK08267 74 TGGRLDVLFNNA 85 (260)
T ss_pred cCCCCCEEEECC
Confidence 34678888764
No 363
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.01 E-value=63 Score=24.66 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHhhhc--cCCCeEEEEcCCCcHH-------HHHHhhcCCCcEEEEEeC
Q 030736 73 FVDAVAENLLDRLEDCR--KTFPTALCLGGSLEAV-------RRLLRGRGGIEKLIMMDT 123 (172)
Q Consensus 73 l~~eva~~l~~rL~~i~--r~~~~vLDlGcGtG~l-------~~~L~~~~~~~~v~~vD~ 123 (172)
|.+..+..+.+.+...- ....+|+-| ||.|+. +++|...+..-.|+.+..
T Consensus 4 LME~Ag~~~a~~i~~~~~~~~~~~v~il-~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 4 LMENAGRAIAELIRKLFGSPKGPRVLIL-CGPGNNGGDGLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp HHHHHHHHHHHHHHHHSTCCTT-EEEEE-E-SSHHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEE-ECCCCChHHHHHHHHHHHHCCCeEEEEEEec
Confidence 34444444444443332 345677777 888864 577766553223433533
No 364
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=41.33 E-value=1.5e+02 Score=23.53 Aligned_cols=70 Identities=13% Similarity=-0.053 Sum_probs=38.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CC-C--Cccce
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK-E--RFGDQ 164 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~-~--~sfDl 164 (172)
.++||-+|+ +|.++..+.+.. ...+|+++..+++-+.... .....+.++.+|....+ +. . ..+|+
T Consensus 17 ~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~ 88 (251)
T PLN00141 17 TKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL-------PQDPSLQIVRADVTEGSDKLVEAIGDDSDA 88 (251)
T ss_pred CCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc-------ccCCceEEEEeeCCCCHHHHHHHhhcCCCE
Confidence 468999984 555555554311 2257888877665433211 11123566777765421 11 0 35899
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
|+++.
T Consensus 89 vi~~~ 93 (251)
T PLN00141 89 VICAT 93 (251)
T ss_pred EEECC
Confidence 99764
No 365
>PRK07904 short chain dehydrogenase; Provisional
Probab=41.01 E-value=1.5e+02 Score=23.57 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHH-HHHHHHhhhhhccCCCceeEEEccCCCCC-----C----
Q 030736 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDM-LKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~m-L~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f---- 157 (172)
..+||-.|++.| ++..++ ..+ ..+|+.++.+++- ++...+.... .....+.++.+|..+.. +
T Consensus 8 ~~~vlItGas~g-iG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 8 PQTILLLGGTSE-IGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKA--AGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CcEEEEEcCCcH-HHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHh--cCCCceEEEEecCCChHHHHHHHHHHH
Confidence 467999997655 555554 332 2588999887763 5443322110 11124556666654322 1
Q ss_pred CCCccceEEEcc
Q 030736 158 KERFGDQLLGAS 169 (172)
Q Consensus 158 ~~~sfDlVvS~~ 169 (172)
..+..|+++.+.
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 114688887654
No 366
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=40.99 E-value=1.4e+02 Score=26.61 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred cccccCHHHHHHHHHHHHhh--cCC--ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCC-CcHH-HHHHhhcCCCcEEEE
Q 030736 47 RVSIFDRHLKRKQRDRAAWL--TRP--NDSFVDAVAENLLDRLEDCRKTFPTALCLGGS-LEAV-RRLLRGRGGIEKLIM 120 (172)
Q Consensus 47 ~~~iFDr~~k~~qr~Raa~~--~~~--~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcG-tG~l-~~~L~~~~~~~~v~~ 120 (172)
...+|-+..+--.|-|.-.. .+. ..+..-++|.+..+. + ...+||=||.| .|.+ +.+|... ++.+|+.
T Consensus 134 L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~~~~---L--~~~~vlvIGAGem~~lva~~L~~~-g~~~i~I 207 (414)
T COG0373 134 LNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRIFGS---L--KDKKVLVIGAGEMGELVAKHLAEK-GVKKITI 207 (414)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHHhcc---c--ccCeEEEEcccHHHHHHHHHHHhC-CCCEEEE
Confidence 44566666655544443322 111 233333333333221 2 23689999999 6654 5677664 4578888
Q ss_pred EeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEccC
Q 030736 121 MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGASL 170 (172)
Q Consensus 121 vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~~ 170 (172)
+--..+ +|.+.+. .- .. .....+.++-.=..+|+|+|+.+
T Consensus 208 aNRT~e---rA~~La~---~~--~~--~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 208 ANRTLE---RAEELAK---KL--GA--EAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred EcCCHH---HHHHHHH---Hh--CC--eeecHHHHHHhhhhCCEEEEecC
Confidence 777653 3332221 01 11 11112222212257999999864
No 367
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.77 E-value=59 Score=27.04 Aligned_cols=72 Identities=14% Similarity=-0.023 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCH-HHHHHHHHhhhhhccCCCc-eeEEEccCC--------CCCCC
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSY-DMLKLCKDAQQDAHNDNIE-TCFVVGDEE--------FLPLK 158 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~-~mL~~a~~~~~~~~~~~~~-~~~~~~D~e--------~Lpf~ 158 (172)
+.+.||-.||..|.++..|+..+ ....|+++--+- .|-+.+.+ .++. ...-+.+.| -..++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-------~gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-------FGLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-------hCCeeEEeccCChHHHHHHHHHHhhCC
Confidence 45789999999998888776421 224677776654 34444422 1221 111222222 22467
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
+++.|+.+.|-
T Consensus 79 ~Gkld~L~NNA 89 (289)
T KOG1209|consen 79 DGKLDLLYNNA 89 (289)
T ss_pred CCceEEEEcCC
Confidence 78899888663
No 368
>PRK07890 short chain dehydrogenase; Provisional
Probab=40.75 E-value=1.7e+02 Score=22.76 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=39.6
Q ss_pred CeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 93 PTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
.++|-.|++.| ++.. |..++ .+|++++.+++-++...+... ..+..+.++..|..+.. +.
T Consensus 6 k~vlItGa~~~-IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 6 KVVVVSGVGPG-LGRTLAVRAARAG--ADVVLAARTAERLDEVAAEID---DLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CEEEEECCCCc-HHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHH---HhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 57888886554 5444 44444 589999999876655433221 11223455666654321 00
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+..|.|+.+-
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 03578887764
No 369
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=40.40 E-value=1.8e+02 Score=22.77 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C----
Q 030736 91 TFPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f---- 157 (172)
..+++|-.|++ |.++..+ .+.+ .+|+.++.+++-++...+... ..+..+.++.+|..+.. +
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAG--AHVLVNGRNAATLEAAVAALR---AAGGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 34688989854 4455544 4433 589999999876654432211 11223445666654321 0
Q ss_pred -CCCccceEEEcc
Q 030736 158 -KERFGDQLLGAS 169 (172)
Q Consensus 158 -~~~sfDlVvS~~ 169 (172)
.-+.+|.|+.+.
T Consensus 84 ~~~~~id~vi~~a 96 (256)
T PRK06124 84 AEHGRLDILVNNV 96 (256)
T ss_pred HhcCCCCEEEECC
Confidence 013567887664
No 370
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=40.25 E-value=1.6e+02 Score=23.46 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=39.5
Q ss_pred CeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030736 93 PTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (172)
Q Consensus 93 ~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~-----~ 159 (172)
.++|-.|++.|. ++..|...+ .+|+.++.+++.++...+... ..+..+.++.+|..+.. +. -
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAG--AKVAILDRNQEKAEAVVAEIK---AAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 578888865542 334444433 589999998776654433221 11223455666654331 10 1
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|.||.+-
T Consensus 86 g~id~li~~a 95 (278)
T PRK08277 86 GPCDILINGA 95 (278)
T ss_pred CCCCEEEECC
Confidence 4678888764
No 371
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=40.06 E-value=54 Score=32.76 Aligned_cols=71 Identities=18% Similarity=0.075 Sum_probs=38.6
Q ss_pred CCeEEEEcCCC-c-HHHHHHhhcCCCc------------EEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE---ccCCC
Q 030736 92 FPTALCLGGSL-E-AVRRLLRGRGGIE------------KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV---GDEEF 154 (172)
Q Consensus 92 ~~~vLDlGcGt-G-~l~~~L~~~~~~~------------~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~---~D~e~ 154 (172)
..+||-||||- | ..+..|.+..... .|+.+|.+++-.+...+.. ++ +..+. .|.+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-----~~--~~~v~lDv~D~e~ 641 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-----EN--AEAVQLDVSDSES 641 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-----CC--CceEEeecCCHHH
Confidence 35899999872 3 2344454432222 4888999987666543311 12 22233 34444
Q ss_pred CCCCCCccceEEEcc
Q 030736 155 LPLKERFGDQLLGAS 169 (172)
Q Consensus 155 Lpf~~~sfDlVvS~~ 169 (172)
+--.-...|+|++++
T Consensus 642 L~~~v~~~DaVIsal 656 (1042)
T PLN02819 642 LLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHhhcCCCEEEECC
Confidence 421113499999976
No 372
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.99 E-value=1.6e+02 Score=24.28 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|+|. |..+..+++......|+.++.+++..+..++
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 456788877754 5555566654333348999999888777653
No 373
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=39.56 E-value=65 Score=26.28 Aligned_cols=36 Identities=17% Similarity=-0.001 Sum_probs=27.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCH
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSY 125 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~~vD~S~ 125 (172)
++..+|+|+=.|.|++++.|... ++.+.|++.-..+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 56789999999999999999863 3345676665543
No 374
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=39.28 E-value=1.1e+02 Score=24.84 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCCcHHHH--HHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAVRR--LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~--~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+||-+|.|.=...+ .|.+.+..-.|++-++++++...+.. . .+.++..+.+.-.+ ..+++|+++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~-------~--~i~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY-------G--NLKLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC-------C--CEEEEeCCCChHHh--CCCcEEEEC
Confidence 34689999988776543 34443322245555888988776532 1 24444433222112 457899988
Q ss_pred cCC
Q 030736 169 SLD 171 (172)
Q Consensus 169 ~~~ 171 (172)
..|
T Consensus 93 TdD 95 (223)
T PRK05562 93 TDD 95 (223)
T ss_pred CCC
Confidence 766
No 375
>PF05059 Orbi_VP4: Orbivirus VP4 core protein; InterPro: IPR007753 Orbivirus are double stranded RNA retroviruses of which the Bluetongue virus (BTV) is a member. The core of BTV is a multienzyme complex composed of two major proteins (VP7 and VP3) and three minor proteins (VP1, VP4 and VP6) in addition to the viral genome. VP4 has been shown to perform all RNA capping activities and has both methyltransferase type 1 and type 2 activities associated with it [].; GO: 0019028 viral capsid; PDB: 2JHP_A 2JHA_A 2JH9_A 2JH8_A 2JHC_A.
Probab=39.13 E-value=47 Score=30.96 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=30.8
Q ss_pred HHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhhc----CCCcEEEEEeCC
Q 030736 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTS 124 (172)
Q Consensus 78 a~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~----~~~~~v~~vD~S 124 (172)
-+.|+..|..+.-..+.|.-+|||.|.....++++ +.-..++++|+=
T Consensus 177 dEKLVSMLDY~vysad~V~YVGsGDlRTL~~F~krdp~RF~rv~W~~~DPI 227 (644)
T PF05059_consen 177 DEKLVSMLDYAVYSADEVHYVGSGDLRTLMQFAKRDPKRFNRVQWHCIDPI 227 (644)
T ss_dssp S-HHHHHHHHH-SS-SEEEEES-TTSHHHHHHHHHSHHHHHTSEEEEE-TT
T ss_pred chhHHHHHHhhhccccEEEEeccCCcHHHHHHHhhChhhhhceEEEEECCc
Confidence 35566666666666789999999999998888753 333478888873
No 376
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=39.13 E-value=1.6e+02 Score=23.23 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCeEEEEcCCCcH--HHHHHhhcCCCcEEEEEeC--CHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030736 92 FPTALCLGGSLEA--VRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLG 167 (172)
Q Consensus 92 ~~~vLDlGcGtG~--l~~~L~~~~~~~~v~~vD~--S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS 167 (172)
..+||=+|+|.=. ....|.+.+ .+|+.++. ++++.+.+.+ ..+.+.....+.-.+ ..+|+|++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~---------~~i~~~~~~~~~~~l--~~adlVia 76 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEE---------GKIRWKQKEFEPSDI--VDAFLVIA 76 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhC---------CCEEEEecCCChhhc--CCceEEEE
Confidence 4689999987432 234555544 57777754 3444443321 113332222111112 46899999
Q ss_pred ccCC
Q 030736 168 ASLD 171 (172)
Q Consensus 168 ~~~~ 171 (172)
+..|
T Consensus 77 aT~d 80 (202)
T PRK06718 77 ATND 80 (202)
T ss_pred cCCC
Confidence 8765
No 377
>PLN02740 Alcohol dehydrogenase-like
Probab=39.11 E-value=71 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+.++||-+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 457899998642 2233344443334479999999998888864
No 378
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=38.91 E-value=1.7e+02 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=24.1
Q ss_pred eEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 94 TALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 94 ~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
++|-.|++.|. ++..|.+++ .+|+.++.+++-++...+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK 42 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 57888866552 334444443 578888988876665543
No 379
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.84 E-value=1.9e+02 Score=22.65 Aligned_cols=73 Identities=18% Similarity=0.029 Sum_probs=41.2
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
.+++|-.|++.| .++..|.+.+ .+|+.++.+++-++...+... ..+..+..+.+|..+.. + .
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAG--AQVAIAARHLDALEKLADEIG---TSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467999997665 2344445544 589999998876665543221 11223445556654321 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+.+|.+|.|-
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14678888764
No 380
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=38.68 E-value=44 Score=27.68 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=26.4
Q ss_pred CeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHH
Q 030736 93 PTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYD 126 (172)
Q Consensus 93 ~~vLDlGcGtG-~l~~~L~~~~~~~~v~~vD~S~~ 126 (172)
.+||=+|+|++ .+.+.|.+.+...+|+++|.++.
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCCc
Confidence 47999999999 47788877543358999998854
No 381
>PRK08703 short chain dehydrogenase; Provisional
Probab=38.59 E-value=1.9e+02 Score=22.44 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=24.1
Q ss_pred CeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHH
Q 030736 93 PTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
.++|-.|++.| ++.. |.+.+ .+|+.++.+++-++..
T Consensus 7 k~vlItG~sgg-iG~~la~~l~~~g--~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 7 KTILVTGASQG-LGEQVAKAYAAAG--ATVILVARHQKKLEKV 46 (239)
T ss_pred CEEEEECCCCc-HHHHHHHHHHHcC--CEEEEEeCChHHHHHH
Confidence 57899996544 4444 44433 5899999988765544
No 382
>PRK05866 short chain dehydrogenase; Provisional
Probab=38.43 E-value=2.1e+02 Score=23.42 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=40.3
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
.++|-.|++.| ++..+ ++.+ .+|+.++.+++-++...+... ..+..+.++.+|..+.. + .
T Consensus 41 k~vlItGasgg-IG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~~l~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 41 KRILLTGASSG-IGEAAAEQFARRG--ATVVAVARREDLLDAVADRIT---RAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57888886554 44444 4433 589999999877665443221 11223445566654321 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+..|+|+.|.
T Consensus 115 ~g~id~li~~A 125 (293)
T PRK05866 115 IGGVDILINNA 125 (293)
T ss_pred cCCCCEEEECC
Confidence 13678888764
No 383
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=38.41 E-value=76 Score=26.06 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=27.2
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+|.=||+|. |.++..|.+.+ .+|+++|.+++.++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 466677764 45666666543 489999999998887754
No 384
>PLN02206 UDP-glucuronate decarboxylase
Probab=38.20 E-value=1.3e+02 Score=26.77 Aligned_cols=73 Identities=16% Similarity=0.011 Sum_probs=40.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHH-HHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKL-CKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQL 165 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~-a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlV 165 (172)
++..++||-.| |+|.++.+|.+.. ...+|+++|....-... .... .......++.+|.-.-.+ ..+|.|
T Consensus 116 ~~~~~kILVTG-atGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~-----~~~~~~~~i~~D~~~~~l--~~~D~V 187 (442)
T PLN02206 116 KRKGLRVVVTG-GAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH-----FSNPNFELIRHDVVEPIL--LEVDQI 187 (442)
T ss_pred ccCCCEEEEEC-cccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh-----ccCCceEEEECCccChhh--cCCCEE
Confidence 34567899998 8999988886521 22579999854211110 0000 111235566666533222 347888
Q ss_pred EEcc
Q 030736 166 LGAS 169 (172)
Q Consensus 166 vS~~ 169 (172)
+-..
T Consensus 188 iHlA 191 (442)
T PLN02206 188 YHLA 191 (442)
T ss_pred EEee
Confidence 7654
No 385
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=37.92 E-value=74 Score=21.98 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=9.0
Q ss_pred eEEEEcCCCcHHHHHH
Q 030736 94 TALCLGGSLEAVRRLL 109 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L 109 (172)
+||-+ ||+|.-+-.+
T Consensus 4 kILvv-CgsG~~TS~m 18 (94)
T PRK10310 4 KIIVA-CGGAVATSTM 18 (94)
T ss_pred eEEEE-CCCchhHHHH
Confidence 35533 8888755444
No 386
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.51 E-value=1.6e+02 Score=27.59 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=50.2
Q ss_pred CeEEEEcCCCcHHHHHHhhc---CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-----CCCCCccce
Q 030736 93 PTALCLGGSLEAVRRLLRGR---GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLKERFGDQ 164 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~---~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-----pf~~~sfDl 164 (172)
++||--| |+|.++..|+++ .+.++++.+|.++.-+..-..... ...+.....++.||..+. .+..-..|.
T Consensus 251 K~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~-~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 251 KTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELR-EKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH-hhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 5677777 788888888752 356899999999987776554321 112234677777877654 355556788
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
|+-.-
T Consensus 329 VfHAA 333 (588)
T COG1086 329 VFHAA 333 (588)
T ss_pred EEEhh
Confidence 77543
No 387
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=37.48 E-value=81 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 457888888753 3344445543333479999999998888764
No 388
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=37.38 E-value=1.7e+02 Score=22.29 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCcHHH----HHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 92 FPTALCLGGSLEAVR----RLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~----~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..++|=+|+ +|.++ ..|...+ .+|+.++.+++-++...
T Consensus 28 ~~~vlVlGg-tG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 28 GKTAVVLGG-TGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAA 69 (194)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence 468999984 34444 3444433 58999988876555443
No 389
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=36.84 E-value=2.1e+02 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 92 ~~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..++|-.|++.|. ++..|.+.+ .+|+.++.+++.++...
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~ 47 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEG--ARVAVLERSAEKLASLR 47 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 3578888865552 334444433 57999999887766554
No 390
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.67 E-value=1.1e+02 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=9.5
Q ss_pred EEccCCCCCCCCCccceEEEc
Q 030736 148 VVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 148 ~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+.+.+. +.+|+|++.
T Consensus 35 ~~~~~~~~~---~~~Dliitt 52 (87)
T cd05567 35 TNSAIDELP---SDADLVVTH 52 (87)
T ss_pred EEcchhhCC---CCCCEEEEC
Confidence 344444443 456777765
No 391
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=36.46 E-value=19 Score=31.65 Aligned_cols=76 Identities=11% Similarity=-0.077 Sum_probs=51.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh----ccCC---CceeEEEccCCCCCCCC-Cc
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----HNDN---IETCFVVGDEEFLPLKE-RF 161 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~----~~~~---~~~~~~~~D~e~Lpf~~-~s 161 (172)
++.+.|.|==.|||.+...-+.= .+.|+|.|++-.|+...+....+. +.-+ .-+..+.+|..+-|+.. ..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 46788999889999887666652 368999999999988432211110 1111 12444778888888754 58
Q ss_pred cceEEE
Q 030736 162 GDQLLG 167 (172)
Q Consensus 162 fDlVvS 167 (172)
||.|||
T Consensus 285 fDaIvc 290 (421)
T KOG2671|consen 285 FDAIVC 290 (421)
T ss_pred eeEEEe
Confidence 999997
No 392
>PRK07774 short chain dehydrogenase; Provisional
Probab=36.43 E-value=1.7e+02 Score=22.62 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=39.9
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-----C-----
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-----K----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf-----~----- 158 (172)
.++|-.| |+|.++..++ +.+ .+|+.++.+++-+....+... .......++..|..+..- .
T Consensus 7 k~vlItG-asg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 7 KVAIVTG-AAGGIGQAYAEALAREG--ASVVVADINAEGAERVAKQIV---ADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5788888 5555665554 433 589999998765544332211 111234455666554320 0
Q ss_pred CCccceEEEccC
Q 030736 159 ERFGDQLLGASL 170 (172)
Q Consensus 159 ~~sfDlVvS~~~ 170 (172)
-+.+|.||.+..
T Consensus 81 ~~~id~vi~~ag 92 (250)
T PRK07774 81 FGGIDYLVNNAA 92 (250)
T ss_pred hCCCCEEEECCC
Confidence 035789987653
No 393
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.07 E-value=98 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 92 ~~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
..+|.=||+|. +.++..|...+ .+|+.+|.+++-++.+.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARG 45 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHH
Confidence 45788888873 34555555533 489999999988887654
No 394
>PRK08226 short chain dehydrogenase; Provisional
Probab=35.82 E-value=2.2e+02 Score=22.39 Aligned_cols=70 Identities=26% Similarity=0.273 Sum_probs=37.8
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
.++|-.|+. |.++..++ +.+ .+|+.++.+++..+...+.. ..+..+.++.+|..+.. +.
T Consensus 7 ~~~lItG~s-~giG~~la~~l~~~G--~~Vv~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 7 KTALITGAL-QGIGEGIARVFARHG--ANLILLDISPEIEKLADELC----GRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHH----HhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 678888865 44554444 433 57999998876444333221 12223445666654421 00
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
.+..|.|+.+.
T Consensus 80 ~~~id~vi~~a 90 (263)
T PRK08226 80 EGRIDILVNNA 90 (263)
T ss_pred cCCCCEEEECC
Confidence 13567877764
No 395
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=35.54 E-value=1e+02 Score=25.78 Aligned_cols=34 Identities=9% Similarity=-0.202 Sum_probs=22.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHH
Q 030736 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDM 127 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~m 127 (172)
++||-.| |+|.++.++++.. ...+|+++|.++..
T Consensus 5 k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 5 KKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPT 40 (349)
T ss_pred CEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 5788888 7777776665421 22579999876543
No 396
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=35.04 E-value=40 Score=30.49 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=41.0
Q ss_pred HhHhhhccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 83 DRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 83 ~rL~~i~r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
+|+...-++...|-|+=||.|-++..+...+ ..|++-|+.++|++.....
T Consensus 241 erlsg~fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 241 ERLSGLFKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKAN 290 (495)
T ss_pred HHHhhccCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHh
Confidence 4555555677899999999999988887743 7999999999999988643
No 397
>PRK08507 prephenate dehydrogenase; Validated
Probab=34.98 E-value=1e+02 Score=25.15 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=26.1
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
+|.=||+|. |.++..|...+...+|+++|.+++-++.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 466777664 445555555443347999999998777764
No 398
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=34.70 E-value=2e+02 Score=22.24 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCH
Q 030736 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY 125 (172)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~ 125 (172)
..++|-.|++.| .++..|.+.+ .+|++++.++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G--~~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAG--ADIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCch
Confidence 367898997655 2344444433 5899888765
No 399
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=34.22 E-value=1.4e+02 Score=22.33 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHH
Q 030736 91 TFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYD 126 (172)
Q Consensus 91 ~~~~vLDlGcGtG-~l~~~L~~~~~~~~v~~vD~S~~ 126 (172)
...+|+|+|-|.= ..+..|.+.| -.|+++|+.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc
Confidence 3469999998876 4577777755 68999999886
No 400
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.81 E-value=1.2e+02 Score=25.24 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=29.5
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
.+|--||+|+ +.++..++..+ ..|+..|.+++.++.+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~ 47 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNR 47 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHH
Confidence 4688898873 34556666544 6899999999999886543
No 401
>PRK08265 short chain dehydrogenase; Provisional
Probab=33.62 E-value=2.4e+02 Score=22.30 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=37.6
Q ss_pred CeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 93 PTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
+++|-.|++.| ++.. |.+.+ .+|+.+|.+++-++...+. .+..+.++.+|..+.. +.
T Consensus 7 k~vlItGas~g-IG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATL-IGAAVARALVAAG--ARVAIVDIDADNGAAVAAS------LGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHH------hCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 57888886544 4444 44443 5899999987655443321 1123445566654331 11
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+..|.++.+-
T Consensus 78 ~g~id~lv~~a 88 (261)
T PRK08265 78 FGRVDILVNLA 88 (261)
T ss_pred hCCCCEEEECC
Confidence 13578877763
No 402
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=33.52 E-value=1.6e+02 Score=27.25 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCcccccCHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHhHhhhccC--CCeEEEEcCCCcH-------HHHHHhhcC
Q 030736 44 GSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKT--FPTALCLGGSLEA-------VRRLLRGRG 113 (172)
Q Consensus 44 ~~~~~~iFDr~~k~~qr~Raa~~~~~-~d~l~~eva~~l~~rL~~i~r~--~~~vLDlGcGtG~-------l~~~L~~~~ 113 (172)
++++.++++....+.--..+...++. .+.|.+..+..+.+.+...-.. ..+||-| ||.|+ ++++|...|
T Consensus 84 ~~~~~~ilt~~qmr~lD~~ai~~~Gis~~~LME~AG~avA~~I~~~~~~~~~~~VlVl-cGpGNNGGDGLVaAR~L~~~G 162 (544)
T PLN02918 84 GSPPLSYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVAASIAEVYKPGEYSRVLAI-CGPGNNGGDGLVAARHLHHFG 162 (544)
T ss_pred CCCceEEeCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcccccCCEEEEE-ECCCcCHHHHHHHHHHHHHCC
Confidence 44557787776654432333333343 4667777777777766543221 2467765 78886 457776544
No 403
>PRK06953 short chain dehydrogenase; Provisional
Probab=33.19 E-value=2.2e+02 Score=21.78 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=21.8
Q ss_pred eEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 94 ~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
++|=.|++.| .+++.|...+ .+|+.++.+++-++..
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G--~~v~~~~r~~~~~~~~ 41 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADG--WRVIATARDAAALAAL 41 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCC--CEEEEEECCHHHHHHH
Confidence 5777776544 2344444433 5788899887665543
No 404
>PRK06101 short chain dehydrogenase; Provisional
Probab=33.11 E-value=2.3e+02 Score=22.00 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHH
Q 030736 94 TALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a 131 (172)
++|-.|+. |.++..+ ..++ .+|+.++.+++.++..
T Consensus 3 ~vlItGas-~giG~~la~~L~~~G--~~V~~~~r~~~~~~~~ 41 (240)
T PRK06101 3 AVLITGAT-SGIGKQLALDYAKQG--WQVIACGRNQSVLDEL 41 (240)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhCC--CEEEEEECCHHHHHHH
Confidence 46666643 4444444 3333 5788888877665543
No 405
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=32.98 E-value=1.1e+02 Score=24.76 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-+|+|+ |.++..+++.....+|+++|.+++-++.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 457899888742 2333444443334469999999988887764
No 406
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=32.73 E-value=72 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
...+++|.=||+|.++..+.. ....++.-|+.+......+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHH
Confidence 578999999999999988865 4478999999998877765
No 407
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=32.51 E-value=1.6e+02 Score=23.25 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcH-------HHHHHhhcCCCcEEEEE
Q 030736 50 IFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA-------VRRLLRGRGGIEKLIMM 121 (172)
Q Consensus 50 iFDr~~k~~qr~Raa~~~~~-~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~-------l~~~L~~~~~~~~v~~v 121 (172)
++.....+.-...+ ...+. ...|.+..+..+.+.+...-....+|+-+ ||+|+ ++++|.. ..+ .|+.+
T Consensus 3 i~t~~qm~~~d~~~-~~~gi~~~~LME~Ag~~va~~i~~~~~~~~~v~vl-~G~GNNGGDGlv~AR~L~~-~~v-~V~~~ 78 (205)
T TIGR00197 3 VVSPKDMAIDKENA-EYLGLTLDLLMENAGKAVAQAVLQAFPLAGHVIIF-CGPGNNGGDGFVVARHLKG-FGV-EVFLL 78 (205)
T ss_pred cCCHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEE-ECCCCCccHHHHHHHHHHh-CCC-EEEEE
Confidence 34444444432333 33344 35567777777766654432223566666 67775 4577765 223 45544
No 408
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=32.00 E-value=85 Score=28.04 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=30.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
.+.+.-.|+|+|-|.+...++.....+.=+|++++...-+.+
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a 232 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCA 232 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHH
Confidence 355778999999999988887655556677777775444433
No 409
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.94 E-value=1.2e+02 Score=24.87 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=28.1
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
.+|.-||+|. +.++..++..+ .+|+.+|.+++-++.+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHH
Confidence 4688888873 23445555533 5899999999988877543
No 410
>PLN00203 glutamyl-tRNA reductase
Probab=31.87 E-value=2.1e+02 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHH
Q 030736 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..+|+=||+| ..+..+. .. +..+|+.++.+++-.....
T Consensus 266 ~kkVlVIGAG--~mG~~~a~~L~~~-G~~~V~V~nRs~era~~La 307 (519)
T PLN00203 266 SARVLVIGAG--KMGKLLVKHLVSK-GCTKMVVVNRSEERVAALR 307 (519)
T ss_pred CCEEEEEeCH--HHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHH
Confidence 4689999884 5554443 33 3458999999987766554
No 411
>PRK06172 short chain dehydrogenase; Provisional
Probab=31.78 E-value=2.5e+02 Score=21.88 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=39.7
Q ss_pred CeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030736 93 PTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (172)
Q Consensus 93 ~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~-----~ 159 (172)
.++|-.|++.|. ++..|.+.+ .+|+.++.+++-++...+... ..+..+.++.+|..+.. ++ -
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREG--AKVVVADRDAAGGEETVALIR---EAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 678999865542 333444443 589999998876655433221 12223555666654321 00 1
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|.|+.+.
T Consensus 83 g~id~li~~a 92 (253)
T PRK06172 83 GRLDYAFNNA 92 (253)
T ss_pred CCCCEEEECC
Confidence 3568888764
No 412
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=31.73 E-value=2.5e+02 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=21.5
Q ss_pred eEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHH
Q 030736 94 TALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a 131 (172)
+||-.|++ |.++..++ +.+ .+|++++.+++-++..
T Consensus 2 ~vlItGas-g~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 2 IVLVTGAT-AGFGECITRRFIQQG--HKVIATGRRQERLQEL 40 (248)
T ss_pred EEEEECCC-chHHHHHHHHHHHCC--CEEEEEECCHHHHHHH
Confidence 46777744 44444443 433 5799999988765544
No 413
>PLN02650 dihydroflavonol-4-reductase
Probab=31.53 E-value=1.6e+02 Score=24.59 Aligned_cols=76 Identities=11% Similarity=-0.129 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-C--CCccceEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-K--ERFGDQLL 166 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf-~--~~sfDlVv 166 (172)
.++||-.| |+|.++.+|.+.. ...+|++++.++..+....+.... ......+.++.+|..+... . -..+|.|+
T Consensus 5 ~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDL-PGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhc-cCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 46788887 7888888876521 225788887775444332211100 0011135667777654321 1 02467777
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
.+.
T Consensus 83 H~A 85 (351)
T PLN02650 83 HVA 85 (351)
T ss_pred EeC
Confidence 653
No 414
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.46 E-value=76 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 92 FPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 92 ~~~vLDlGcG-tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..+|+-+|+| .|..+...+.... .+|+.+|.+++-++.+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLD 207 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHH
Confidence 4579999887 2333333332222 47999999987666553
No 415
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=31.45 E-value=2.5e+02 Score=21.91 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=36.9
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030736 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (172)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~-----~ 159 (172)
.++|-.|++.| .+++.|.+++ .+|+.+|.++...+...+.. ..+..+.++.+|..+.. +. -
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEG--ARVVLVDRSELVHEVAAELR----AAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCchHHHHHHHHHH----hcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 57888886554 2344444443 57889998864332222211 12223445566654421 00 1
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|.++.|-
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 3578887764
No 416
>PRK07063 short chain dehydrogenase; Provisional
Probab=31.43 E-value=2.6e+02 Score=21.94 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030736 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (172)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~----- 158 (172)
.+++|-.|++.| .++..|.+.+ .+|+.+|.+++-++...+.... ...+..+.++.+|..+.. +.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREG--AAVALADLDAALAERAAAAIAR-DVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367899997655 2344445544 5899999988766655432210 001223555666654321 00
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+.+|.+|.+-
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 13678888764
No 417
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=31.24 E-value=2e+02 Score=25.47 Aligned_cols=45 Identities=11% Similarity=-0.078 Sum_probs=33.2
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCC----CcEEEEEeCCHHHHHHHHH
Q 030736 89 RKTFPTALCLGGSLEAVRRLLRGRGG----IEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 89 ~r~~~~vLDlGcGtG~l~~~L~~~~~----~~~v~~vD~S~~mL~~a~~ 133 (172)
.++..+|||+.+-+|.=+..|.+... .+.|++-|.++.-+....+
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~ 201 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVH 201 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHH
Confidence 35678999999999987765554221 2489999999977766554
No 418
>PLN02827 Alcohol dehydrogenase-like
Probab=31.11 E-value=1.2e+02 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|+|+ |.++..+++......|+++|.+++-++.+++
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 467899988642 2333334443334469999999988888754
No 419
>PRK06180 short chain dehydrogenase; Provisional
Probab=31.03 E-value=2.8e+02 Score=22.19 Aligned_cols=38 Identities=18% Similarity=-0.039 Sum_probs=24.0
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHH
Q 030736 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a 131 (172)
.++|-.|++.| ++..+++.. ...+|++++.+++-++..
T Consensus 5 ~~vlVtGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 5 KTWLITGVSSG-FGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CEEEEecCCCh-HHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 56888886554 555444311 225899999988766544
No 420
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=30.72 E-value=2.6e+02 Score=21.85 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=39.7
Q ss_pred CCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------C--
Q 030736 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L-- 157 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--------f-- 157 (172)
..+||-.|+++| ++.. |.+.+ .+++.++.+++.++...+... ..+..+.++..|..+.. +
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~~~G--~~vv~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAG--ASVVVSDINADAANHVVDEIQ---QLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 468999996655 4444 44433 578889988877665433211 11223444555554321 0
Q ss_pred CCCccceEEEcc
Q 030736 158 KERFGDQLLGAS 169 (172)
Q Consensus 158 ~~~sfDlVvS~~ 169 (172)
.-+.+|.|+.+-
T Consensus 85 ~~~~~d~li~~a 96 (255)
T PRK06113 85 KLGKVDILVNNA 96 (255)
T ss_pred HcCCCCEEEECC
Confidence 013578887764
No 421
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.66 E-value=1.4e+02 Score=25.60 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=29.0
Q ss_pred CCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 92 ~~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
..+|.-||+|+ ..++..++..| .+|+..|.+++.++.+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~ 48 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRA 48 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHH
Confidence 46788998883 34555566544 689999999998877544
No 422
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.63 E-value=1.1e+02 Score=25.09 Aligned_cols=38 Identities=11% Similarity=0.265 Sum_probs=27.1
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+|.=||+|. +.++..|+..+ .+|+.+|.+++.++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHH
Confidence 577788762 33555565543 579999999999988754
No 423
>PRK12829 short chain dehydrogenase; Provisional
Probab=30.49 E-value=2.6e+02 Score=21.76 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=40.5
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030736 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~---- 158 (172)
..++|-.|++ |.++..++ +.+ .+|++++.+++.++...+.. ....+.++.+|..+.. +.
T Consensus 11 ~~~vlItGa~-g~iG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 11 GLRVLVTGGA-SGIGRAIAEAFAEAG--ARVHVCDVSEAALAATAARL-----PGAKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHH-----hcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3689999965 55555544 333 57999999988776543321 1113445566654322 11
Q ss_pred -CCccceEEEcc
Q 030736 159 -ERFGDQLLGAS 169 (172)
Q Consensus 159 -~~sfDlVvS~~ 169 (172)
-..+|.|+.+.
T Consensus 83 ~~~~~d~vi~~a 94 (264)
T PRK12829 83 RFGGLDVLVNNA 94 (264)
T ss_pred HhCCCCEEEECC
Confidence 13578888654
No 424
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=30.02 E-value=82 Score=28.88 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH----HHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEE
Q 030736 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY----DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLL 166 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~~vD~S~----~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVv 166 (172)
...+|+|..+|.|.++.+|.+. .|+.+-.-+ +-|..--+ .++-.. .+-=.|.++.-+.+||||-
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIyd-------RGLIG~-yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYD-------RGLIGV-YHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred ceeeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhh-------cccchh-ccchhhccCCCCcchhhee
Confidence 3568999999999999999863 244444333 22222211 111110 1112477888889999987
Q ss_pred Ec
Q 030736 167 GA 168 (172)
Q Consensus 167 S~ 168 (172)
++
T Consensus 433 A~ 434 (506)
T PF03141_consen 433 AD 434 (506)
T ss_pred hh
Confidence 65
No 425
>PRK07035 short chain dehydrogenase; Provisional
Probab=30.01 E-value=2.7e+02 Score=21.68 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=25.0
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.+||-.|++.| .+.+.|.+.+ .+|+.++.+++-++...
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G--~~Vi~~~r~~~~~~~~~ 49 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQG--AHVIVSSRKLDGCQAVA 49 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 57888997766 2344444444 58999999876555443
No 426
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=29.72 E-value=1.7e+02 Score=25.41 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCcH----HHHHHhhcC---CCcEEEEEeC----CHHHHHHHHHhhhh-hccCCCceeEEE
Q 030736 91 TFPTALCLGGSLEA----VRRLLRGRG---GIEKLIMMDT----SYDMLKLCKDAQQD-AHNDNIETCFVV 149 (172)
Q Consensus 91 ~~~~vLDlGcGtG~----l~~~L~~~~---~~~~v~~vD~----S~~mL~~a~~~~~~-~~~~~~~~~~~~ 149 (172)
..-+|+|+|.|.|. +...|+.+. +.-+||+++. +..-++...+.... +..-+++.+|..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~ 180 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP 180 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence 34689999999994 455565432 2348999999 77777665544321 223445555533
No 427
>PRK09072 short chain dehydrogenase; Provisional
Probab=29.43 E-value=2.8e+02 Score=21.79 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=39.7
Q ss_pred CeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C----CCC
Q 030736 93 PTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----KER 160 (172)
Q Consensus 93 ~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f----~~~ 160 (172)
.++|=.|++.|. +++.|.++| .+|++++.+++-+....... .....+.++.+|..+.. + .-+
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAG--ARLLLVGRNAEKLEALAARL----PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH----hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 578888866542 344445544 68999999987666554321 01123455556654321 0 013
Q ss_pred ccceEEEcc
Q 030736 161 FGDQLLGAS 169 (172)
Q Consensus 161 sfDlVvS~~ 169 (172)
..|.|+.+.
T Consensus 80 ~id~lv~~a 88 (263)
T PRK09072 80 GINVLINNA 88 (263)
T ss_pred CCCEEEECC
Confidence 568887763
No 428
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=29.40 E-value=3.3e+02 Score=22.58 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=39.5
Q ss_pred CeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceE
Q 030736 93 PTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERFGDQL 165 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~--~~sfDlV 165 (172)
++||-.| |+|.++.++.+ .+...+|+++|.++.-.....+. .....+.++.+|..+.. +. -..+|.|
T Consensus 5 k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~-----~~~~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 5 KSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK-----FPAPCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH-----hCCCcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 5788888 57887777764 23235788898765433222111 01123556777765432 10 0247888
Q ss_pred EEcc
Q 030736 166 LGAS 169 (172)
Q Consensus 166 vS~~ 169 (172)
+.+.
T Consensus 79 ih~A 82 (324)
T TIGR03589 79 VHAA 82 (324)
T ss_pred EECc
Confidence 8753
No 429
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.38 E-value=3.1e+02 Score=23.06 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 92 ~~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
..+||-.|++.|. ++..|++++ .+|+.++.+++-++...+... ..+..+.++..|..+.. + .
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~~~~---~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAEECR---ALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 3578888876552 334444544 589999999887765543221 12223444555543321 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
.+.+|++|.|.
T Consensus 82 ~g~iD~lVnnA 92 (330)
T PRK06139 82 GGRIDVWVNNV 92 (330)
T ss_pred cCCCCEEEECC
Confidence 14688888764
No 430
>PRK05876 short chain dehydrogenase; Provisional
Probab=29.21 E-value=3e+02 Score=22.11 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=38.6
Q ss_pred CeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 93 PTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
.++|-.|+++| ++.. |+..+ .+|+.+|.+++-++...+... ..+..+.++..|..+.. + .
T Consensus 7 k~vlVTGas~g-IG~ala~~La~~G--~~Vv~~~r~~~~l~~~~~~l~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASG-IGLATGTEFARRG--ARVVLGDVDKPGLRQAVNHLR---AEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56888886655 4444 44433 578889988766655432211 12233555666654321 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+..|+||.|-
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 13468877754
No 431
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=29.19 E-value=1.1e+02 Score=25.25 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
+..+||-+|||. |.++..+++......|+.+|..++.++.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 346789888753 445555655444456888899988877664
No 432
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=29.17 E-value=1.5e+02 Score=21.49 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=38.8
Q ss_pred CCeEEEEcCCCc--HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEcc
Q 030736 92 FPTALCLGGSLE--AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGAS 169 (172)
Q Consensus 92 ~~~vLDlGcGtG--~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~~ 169 (172)
..++|=+|+|.- .+...|... ...+|+.+.-+.+-.+...+.. ....+..+. .+.++-.-..+|+|+++.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~-----~~~~~~~~~--~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEF-----GGVNIEAIP--LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHH-----TGCSEEEEE--GGGHCHHHHTESEEEE-S
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHc-----Cccccceee--HHHHHHHHhhCCeEEEec
Confidence 478999998632 233444444 4678999999976554443221 111222222 233331125699999875
Q ss_pred C
Q 030736 170 L 170 (172)
Q Consensus 170 ~ 170 (172)
.
T Consensus 84 ~ 84 (135)
T PF01488_consen 84 P 84 (135)
T ss_dssp S
T ss_pred C
Confidence 4
No 433
>PLN02780 ketoreductase/ oxidoreductase
Probab=29.15 E-value=2.9e+02 Score=23.09 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
...+|-.|++.| .++..|+++| .+|+.++.+++-++...+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G--~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG--LNLVLVARNPDKLKDVSD 95 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH
Confidence 468899997666 3455555544 589999999987776543
No 434
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=29.13 E-value=1.5e+02 Score=26.10 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=29.3
Q ss_pred cCCCeEEEEcCCCcHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSLEAVR-RLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~-~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
++..+|.-+|||.=-++ ..=+.......|+++|+.++=++.|++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 34567888888753222 222222345699999999999999975
No 435
>PRK05993 short chain dehydrogenase; Provisional
Probab=29.13 E-value=2.6e+02 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=24.7
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.+||-.|++ |.++..+ .+.+ .+|++++.+++-++...
T Consensus 5 k~vlItGas-ggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 5 RSILITGCS-SGIGAYCARALQSDG--WRVFATCRKEEDVAALE 45 (277)
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence 468888865 4454444 4433 58999999987766543
No 436
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=29.13 E-value=2.4e+02 Score=23.18 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=17.9
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeC
Q 030736 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDT 123 (172)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~ 123 (172)
+||-.| |+|.++.+|++.. ...+|++++.
T Consensus 2 ~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred eEEEEC-CCChHHHHHHHHHHHCCCeEEEEec
Confidence 577777 6677776665421 1247888874
No 437
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=29.10 E-value=1.5e+02 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCeEEEEcCC--CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 92 FPTALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 92 ~~~vLDlGcG--tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
..+|.=||+| ...++..|+..+ .+|+..|.+++.++.+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~ 44 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGL 44 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHH
Confidence 3568888887 234555555543 58999999999887654
No 438
>PRK07677 short chain dehydrogenase; Provisional
Probab=29.01 E-value=2.8e+02 Score=21.64 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=23.3
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.++|-.|++.| .++..|.+.+ .+|++++.+++.++...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G--~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG--ANVVITGRTKEKLEEAK 42 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 46787887655 2334444433 47888888876665543
No 439
>PRK08862 short chain dehydrogenase; Provisional
Probab=28.88 E-value=2.9e+02 Score=21.67 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=28.0
Q ss_pred CeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 93 PTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 93 ~~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
.++|-.|++.|. ++..|++.+ .+|+.++.+++.++...+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLG--ATLILCDQDQSALKDTYE 47 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 578999988874 455555544 579999988887766543
No 440
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=28.64 E-value=4.3e+02 Score=23.60 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=20.1
Q ss_pred CeEEEEcCCCcHHHHHHhh---cCCCcEEEEEeCC
Q 030736 93 PTALCLGGSLEAVRRLLRG---RGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~---~~~~~~v~~vD~S 124 (172)
.+||=+|||. ++..+.+ ..+++.++.+|.+
T Consensus 21 s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~ 53 (425)
T cd01493 21 AHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGS 53 (425)
T ss_pred CeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCC
Confidence 6799999983 3333322 2357899999876
No 441
>PRK07024 short chain dehydrogenase; Provisional
Probab=28.60 E-value=2.9e+02 Score=21.67 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=39.5
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
++||-.|+.+ .++..+ .+.+ .+|+.+|.+++.++...+... ... .+.++.+|..+.. + .
T Consensus 3 ~~vlItGas~-gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~ 75 (257)
T PRK07024 3 LKVFITGASS-GIGQALAREYARQG--ATLGLVARRTDALQAFAARLP---KAA-RVSVYAADVRDADALAAAAADFIAA 75 (257)
T ss_pred CEEEEEcCCc-HHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcc---cCC-eeEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4688888644 455444 4433 589999998877765443210 111 4556666665421 0 1
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+.+|+++.+.
T Consensus 76 ~g~id~lv~~a 86 (257)
T PRK07024 76 HGLPDVVIANA 86 (257)
T ss_pred CCCCCEEEECC
Confidence 13478888764
No 442
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=28.54 E-value=1.6e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|+|. |.++..+++......++++|.+++-++.+++
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 356788887643 4455555554445579999999988887654
No 443
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=28.46 E-value=1.8e+02 Score=26.98 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=42.2
Q ss_pred CeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCH--HHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCc
Q 030736 93 PTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSY--DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERF 161 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~S~--~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~~~s 161 (172)
++||-.| |+|.++.+|.+ .+...+|+++|..+ .-+...... .....+.++.+|..+.. +....
T Consensus 7 ~~VLVTG-atGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~-----~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 80 (668)
T PLN02260 7 KNILITG-AAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPS-----KSSPNFKFVKGDIASADLVNYLLITEG 80 (668)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhc-----ccCCCeEEEECCCCChHHHHHHHhhcC
Confidence 6899998 88999888765 22235799998642 111111000 01124667788876532 22356
Q ss_pred cceEEEccC
Q 030736 162 GDQLLGASL 170 (172)
Q Consensus 162 fDlVvS~~~ 170 (172)
+|.||-+.+
T Consensus 81 ~D~ViHlAa 89 (668)
T PLN02260 81 IDTIMHFAA 89 (668)
T ss_pred CCEEEECCC
Confidence 899886543
No 444
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=28.45 E-value=79 Score=22.05 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 101 SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 101 GtG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
|-|.++..+++... .+|+++|.++.-++.+++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence 34777777776544 899999999998888875
No 445
>PRK08177 short chain dehydrogenase; Provisional
Probab=28.24 E-value=2.3e+02 Score=21.71 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=18.8
Q ss_pred eEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHH
Q 030736 94 TALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 94 ~vLDlGcGtG~---l~~~L~~~~~~~~v~~vD~S~~mL~ 129 (172)
+||=.|+..|. +++.|...+ .+|+.++.+++-++
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~ 39 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG--WQVTATVRGPQQDT 39 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC--CEEEEEeCCCcchH
Confidence 56777754331 334444433 47888887765443
No 446
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=28.20 E-value=2.5e+02 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=22.6
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCCH
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSY 125 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S~ 125 (172)
.+||=+|||. | .++..|+.. .+++++.+|...
T Consensus 20 s~VLIvG~gGLG~EiaKnLala-GVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILA-GVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCc
Confidence 6799999983 2 345566554 478999999763
No 447
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=27.99 E-value=3e+02 Score=21.65 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=23.2
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030736 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a 131 (172)
.++|-.|++.| .+++.|.+.+ .+|+.+|.+++-++..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEG--ARVAVLDKSAAGLQEL 45 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 57888886554 1334444433 5788888887665544
No 448
>PRK07109 short chain dehydrogenase; Provisional
Probab=27.91 E-value=3.6e+02 Score=22.56 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=40.1
Q ss_pred CeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 93 PTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
.+||-.|++.| ++.. |.+.+ .+|+.++.+++-++...+... ..+.++.++.+|..+.. + .
T Consensus 9 k~vlITGas~g-IG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~~l~---~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAG-VGRATARAFARRG--AKVVLLARGEEGLEALAAEIR---AAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57888886554 4444 44443 589999998876665443221 12234555666654321 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+.+|++|.|-
T Consensus 83 ~g~iD~lInnA 93 (334)
T PRK07109 83 LGPIDTWVNNA 93 (334)
T ss_pred CCCCCEEEECC
Confidence 13578887663
No 449
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=27.73 E-value=2.4e+02 Score=22.95 Aligned_cols=76 Identities=4% Similarity=-0.211 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERFGDQLL 166 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~--~~sfDlVv 166 (172)
.++||-.| |+|.++.+|.+.. ...+|++++.++............ ......+.++.+|..+.. +. -..+|.|+
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLAL-DGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhc-cCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 36788888 6888887776421 124788887665432211111000 001124566777765432 10 12478887
Q ss_pred Ecc
Q 030736 167 GAS 169 (172)
Q Consensus 167 S~~ 169 (172)
.+.
T Consensus 82 h~A 84 (322)
T PLN02662 82 HTA 84 (322)
T ss_pred EeC
Confidence 754
No 450
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=27.61 E-value=1.9e+02 Score=26.61 Aligned_cols=42 Identities=10% Similarity=0.001 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGtG-~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-+|+|.= ..+..++... ...|+.+|.+++-++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 3479999999865 3333333322 2579999999998888764
No 451
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.47 E-value=1.5e+02 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.1
Q ss_pred CeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHH
Q 030736 93 PTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYD 126 (172)
Q Consensus 93 ~~vLDlGcGtG-~l~~~L~~~~~~~~v~~vD~S~~ 126 (172)
.+|.|+|-|-= .++..|++++ -.++++|+.+.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~ 47 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK 47 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcC--CcEEEEecccc
Confidence 58999988754 3577788765 68999999875
No 452
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=27.35 E-value=1.7e+02 Score=23.98 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||..|+| .|..+..+++......+++++.+++..+.+++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 45678887765 25555556554333478999999888777653
No 453
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=27.33 E-value=3e+02 Score=22.98 Aligned_cols=75 Identities=7% Similarity=-0.179 Sum_probs=41.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccce
Q 030736 90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERFGDQ 164 (172)
Q Consensus 90 r~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f~--~~sfDl 164 (172)
.+.++||-.| |+|.++.++.+.. ...+|++++.++.-........ .....+.++.+|..... +. -..+|.
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKW----KEGDRLRLFRADLQEEGSFDEAVKGCDG 82 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhh----ccCCeEEEEECCCCCHHHHHHHHcCCCE
Confidence 3457899998 6888887776521 2258888887764333221110 01123556667655432 10 024677
Q ss_pred EEEcc
Q 030736 165 LLGAS 169 (172)
Q Consensus 165 VvS~~ 169 (172)
||.+.
T Consensus 83 Vih~A 87 (353)
T PLN02896 83 VFHVA 87 (353)
T ss_pred EEECC
Confidence 77654
No 454
>PRK06125 short chain dehydrogenase; Provisional
Probab=27.25 E-value=3.1e+02 Score=21.51 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-CCCc
Q 030736 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-KERF 161 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-~~~s 161 (172)
.+++|=.|++.| ++..+ .+.+ .+|++++.+++.++...+.... ..+..+.++..|..+.. + .-+.
T Consensus 7 ~k~vlItG~~~g-iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 7 GKRVLITGASKG-IGAAAAEAFAAEG--CHLHLVARDADALEALAADLRA--AHGVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHhCC
Confidence 367888896554 55444 4433 5899999998877665432210 11223445555554321 0 0146
Q ss_pred cceEEEcc
Q 030736 162 GDQLLGAS 169 (172)
Q Consensus 162 fDlVvS~~ 169 (172)
.|.+|.+.
T Consensus 82 id~lv~~a 89 (259)
T PRK06125 82 IDILVNNA 89 (259)
T ss_pred CCEEEECC
Confidence 88888764
No 455
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=27.14 E-value=1.9e+02 Score=23.73 Aligned_cols=77 Identities=4% Similarity=-0.231 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-C--CCccceEE
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-K--ERFGDQLL 166 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf-~--~~sfDlVv 166 (172)
..+||-.| |+|.++.++.+.. ...+|++++.++.......... ........+.++.+|..+... . -..+|.|+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLL-ALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHH-hccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 36789888 6788777776421 1247877766654333221110 000011235667777654321 0 02478888
Q ss_pred EccC
Q 030736 167 GASL 170 (172)
Q Consensus 167 S~~~ 170 (172)
.+..
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7653
No 456
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=26.93 E-value=1.5e+02 Score=28.25 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030736 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (172)
Q Consensus 92 ~~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~ 134 (172)
..+|.-||+|+ ..++..++..| ..|+..|.+++.++.+.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~ 355 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTE 355 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHH
Confidence 35799999987 34555566543 6899999999999876543
No 457
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=26.84 E-value=81 Score=21.54 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCcHH-HHHHhhc-CCCcEEEEEeC
Q 030736 92 FPTALCLGGSLEAV-RRLLRGR-GGIEKLIMMDT 123 (172)
Q Consensus 92 ~~~vLDlGcGtG~l-~~~L~~~-~~~~~v~~vD~ 123 (172)
.++||-+||.+|+- +..+.-. +...+.+++-.
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 47899999999963 3223221 23356666643
No 458
>PRK08328 hypothetical protein; Provisional
Probab=26.84 E-value=91 Score=25.09 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=23.1
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+||=+|||. | .++..|+.. .+++++.+|.+
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQ 60 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 5799999993 3 456666664 47899999955
No 459
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.62 E-value=3.5e+02 Score=22.48 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=27.7
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
++|+-+|+|. |.++-.|.+.+ .+|+.++.+++-++.-+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~ 42 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQ 42 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHh
Confidence 5789999884 45666777644 57999999877666554
No 460
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=26.62 E-value=2.3e+02 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=17.3
Q ss_pred EEEEcCCCcHHHHHHhh----cCCCcEEEEEeC
Q 030736 95 ALCLGGSLEAVRRLLRG----RGGIEKLIMMDT 123 (172)
Q Consensus 95 vLDlGcGtG~l~~~L~~----~~~~~~v~~vD~ 123 (172)
||=.| |+|.++..+.+ .+...+|+++|.
T Consensus 2 ilItG-atG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 2 ILVTG-GAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred EEEEc-CCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 55566 77777776654 222246888874
No 461
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.38 E-value=1.8e+02 Score=24.16 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|+| .|..+..+++......++++|.+++-++.+++
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 45788888765 23444445554445579999999988887764
No 462
>PRK07102 short chain dehydrogenase; Provisional
Probab=26.26 E-value=3.1e+02 Score=21.21 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=38.0
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC--CCc
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK--ERF 161 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~--~~s 161 (172)
+++|-.|+ +|.++..++ +.+ .+|+.+|.+++-+....+... ......+.++.+|..+.. ++ ...
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAG--ARLYLAARDVERLERLADDLR--ARGAVAVSTHELDILDTASHAAFLDSLPAL 76 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH--HhcCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 36888884 455555544 333 589999998865543322110 011224556666655431 00 124
Q ss_pred cceEEEc
Q 030736 162 GDQLLGA 168 (172)
Q Consensus 162 fDlVvS~ 168 (172)
+|.|+.+
T Consensus 77 ~d~vv~~ 83 (243)
T PRK07102 77 PDIVLIA 83 (243)
T ss_pred CCEEEEC
Confidence 6888865
No 463
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=26.13 E-value=1.4e+02 Score=27.37 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+|+-+|||. |..+...+.... ..|+++|.+++-++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 568999999997 444555554333 479999999999999875
No 464
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=26.07 E-value=3.6e+02 Score=21.85 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=43.2
Q ss_pred cccCHHHHHHHHHHHHhh----cCC-ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcHHHHHHhh-----cCCCcEE
Q 030736 49 SIFDRHLKRKQRDRAAWL----TRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-----RGGIEKL 118 (172)
Q Consensus 49 ~iFDr~~k~~qr~Raa~~----~~~-~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~l~~~L~~-----~~~~~~v 118 (172)
--+|...+|+.++---.. ++. .++|.++..+.+ .. ..-.++.=+||| +++++|.. .....-+
T Consensus 42 ~~vdsatIRrDfSYFG~lGkrG~GYnV~~L~~ff~~~L----g~--~~~tnviiVG~G--nlG~All~Y~f~~~~~~~iv 113 (211)
T COG2344 42 LGVDSATIRRDFSYFGELGKRGYGYNVKYLRDFFDDLL----GQ--DKTTNVIIVGVG--NLGRALLNYNFSKKNGMKIV 113 (211)
T ss_pred hCCCHHHHhhhhHHHHhcCCCCCCccHHHHHHHHHHHh----CC--CcceeEEEEccC--hHHHHHhcCcchhhcCceEE
Confidence 458888888887643322 222 355555544433 21 223568888776 88888875 2234456
Q ss_pred EEEeCCHHHH
Q 030736 119 IMMDTSYDML 128 (172)
Q Consensus 119 ~~vD~S~~mL 128 (172)
-+.|++++.+
T Consensus 114 ~~FDv~~~~V 123 (211)
T COG2344 114 AAFDVDPDKV 123 (211)
T ss_pred EEecCCHHHh
Confidence 6889988744
No 465
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=25.87 E-value=1.3e+02 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~----L~~~~~~~~v~~vD~S~~mL~ 129 (172)
+..+|+-+|+| .++.. |... +..+|+.++.+++-..
T Consensus 181 ~~~~vlViGaG--~iG~~~a~~L~~~-G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 181 SGKKVLVIGAG--EMGELVAKHLAEK-GVRKITVANRTLERAE 220 (423)
T ss_pred cCCEEEEECch--HHHHHHHHHHHHC-CCCeEEEEeCCHHHHH
Confidence 34789999885 44433 3332 3468999999986654
No 466
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=25.84 E-value=1.4e+02 Score=24.40 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.3
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
+|.=||+|. +.++..|...+ .+|++.|.+++-++...
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~ 42 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVI 42 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHH
Confidence 577788875 34666676643 47999999998776654
No 467
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.83 E-value=3.3e+02 Score=21.45 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030736 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~---- 158 (172)
.+++|-.|+ +|.++.++ ..++ .+|++++.+++-++...+... ..+..+.++.+|..+.. +.
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAEQIR---AAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899995 55555554 4443 589999998866554432211 11223455566654432 00
Q ss_pred -CCccceEEEcc
Q 030736 159 -ERFGDQLLGAS 169 (172)
Q Consensus 159 -~~sfDlVvS~~ 169 (172)
-+.+|.|+.+-
T Consensus 84 ~~~~id~vi~~A 95 (263)
T PRK07814 84 AFGRLDIVVNNV 95 (263)
T ss_pred HcCCCCEEEECC
Confidence 03578888753
No 468
>PRK07478 short chain dehydrogenase; Provisional
Probab=25.75 E-value=3.2e+02 Score=21.26 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=40.6
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030736 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (172)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~-----~ 159 (172)
.++|-.|++.| .+++.|.+.+ .+|+.++.+++-++...+... ..+..+.++.+|..+.. ++ -
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREG--AKVVVGARRQAELDQLVAEIR---AEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 57888887655 2344555544 589999998876655433221 12223555666654431 11 1
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|.+|.+.
T Consensus 82 ~~id~li~~a 91 (254)
T PRK07478 82 GGLDIAFNNA 91 (254)
T ss_pred CCCCEEEECC
Confidence 3678888764
No 469
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=25.56 E-value=3.3e+02 Score=21.27 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=24.4
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.++|-.|+ +|.++..++ +++ .+|+.+|.+++.+....
T Consensus 7 ~~vlItGa-s~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 7 KVALLTGA-ASGIGEAVAERYLAEG--ARVVIADIKPARARLAA 47 (257)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH
Confidence 56888884 444555554 433 57999999887766543
No 470
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=25.51 E-value=6.6e+02 Score=24.80 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHhHhhhccCCCeEEEEcCCCcH------HHHHHhhcCCCcEEE-EEeCCHHHHHHHHH
Q 030736 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA------VRRLLRGRGGIEKLI-MMDTSYDMLKLCKD 133 (172)
Q Consensus 70 ~d~l~~eva~~l~~rL~~i~r~~~~vLDlGcGtG~------l~~~L~~~~~~~~v~-~vD~S~~mL~~a~~ 133 (172)
..|.+..++.++.+.+.+ .+...+|-...|||- +.-.|.+.+.+++|. .+|- ..++++|.+
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~--g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR-~~Lv~QA~~ 233 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSK--GQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADR-NALVDQAYG 233 (875)
T ss_pred chHHHHHHHHHHHHHHhc--CCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEech-HHHHHHHHH
Confidence 467787888888887664 333467888999993 333344445566665 5554 567777763
No 471
>PRK08223 hypothetical protein; Validated
Probab=25.31 E-value=1e+02 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.057 Sum_probs=24.2
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+||-+|||. +.++..|+.. .+++++.+|.+
T Consensus 28 s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D 60 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFD 60 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCC
Confidence 6799999994 4567777765 47899999876
No 472
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.26 E-value=1.7e+02 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=26.3
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.+|.-+|+|. +.++..|+..+ .+|++.|.+++-++.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~ 42 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAP 42 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHH
Confidence 4688888763 23455555544 58999999998877654
No 473
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.23 E-value=2.2e+02 Score=21.41 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCCcHH--HHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEc
Q 030736 91 TFPTALCLGGSLEAV--RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERFGDQLLGA 168 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l--~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lpf~~~sfDlVvS~ 168 (172)
...+||-+|+|.=.. ++.|.+.+ .+|+.++ ++..+...+. . .+.+.....+.-.+ ..+|+|++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIs--p~~~~~l~~l------~--~i~~~~~~~~~~dl--~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVS--PEICKEMKEL------P--YITWKQKTFSNDDI--KDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEc--CccCHHHHhc------c--CcEEEecccChhcC--CCceEEEEC
Confidence 357899999885433 34555533 5777774 3333322211 1 12222222221122 568999988
Q ss_pred cCC
Q 030736 169 SLD 171 (172)
Q Consensus 169 ~~~ 171 (172)
..|
T Consensus 78 T~d 80 (157)
T PRK06719 78 TNQ 80 (157)
T ss_pred CCC
Confidence 765
No 474
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=25.11 E-value=1.4e+02 Score=26.24 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~ 129 (172)
...+|+-+|+| .++..+ ... +..+|+.++.+++-..
T Consensus 179 ~~~~VlViGaG--~iG~~~a~~L~~~-G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 179 KGKKALLIGAG--EMGELVAKHLLRK-GVGKILIANRTYERAE 218 (417)
T ss_pred cCCEEEEECCh--HHHHHHHHHHHHC-CCCEEEEEeCCHHHHH
Confidence 34789999985 444333 332 3468999999986544
No 475
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=25.07 E-value=2e+02 Score=24.22 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=28.5
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 90 r~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
++.++||-+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3457899888631 2333344443333479999999998888754
No 476
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.01 E-value=3.4e+02 Score=21.19 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030736 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~---- 158 (172)
..+||-.|+ +|.++..++ +.+ .+|+.++.+++.++...+... ..+..+.++.+|..+.. +.
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAAESLK---GQGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHH---hcCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 368999985 555555554 433 589999999876655433221 12233455566654421 10
Q ss_pred -CCccceEEEcc
Q 030736 159 -ERFGDQLLGAS 169 (172)
Q Consensus 159 -~~sfDlVvS~~ 169 (172)
-+..|.|+.+.
T Consensus 84 ~~~~~d~li~~a 95 (255)
T PRK07523 84 EIGPIDILVNNA 95 (255)
T ss_pred hcCCCCEEEECC
Confidence 13478887764
No 477
>PRK08251 short chain dehydrogenase; Provisional
Probab=24.93 E-value=3.3e+02 Score=21.05 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=40.4
Q ss_pred CeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------C
Q 030736 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-f---------~ 158 (172)
+++|-.|+ +|.++..++ +.+ .+|+.++.+++.++...+.... ...+..+.++.+|..+.. + .
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKG--RDLALCARRTDRLEELKAELLA-RYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46888885 555555554 333 5899999988777655332110 112334555666665431 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+..|.|+.+.
T Consensus 79 ~~~id~vi~~a 89 (248)
T PRK08251 79 LGGLDRVIVNA 89 (248)
T ss_pred cCCCCEEEECC
Confidence 13477777664
No 478
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=24.88 E-value=1.5e+02 Score=25.64 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHH---HHHhhhhhccCCCceeEEEccCCCCC-----CCCC-
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKL---CKDAQQDAHNDNIETCFVVGDEEFLP-----LKER- 160 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~---a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~~~- 160 (172)
..+||-+| |+|.++..+.+.. ...+|++++.++.-+.. ..+.. .....+.++.+|..+.. +...
T Consensus 60 ~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~----~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 60 DVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTK----KELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHh----hhcCCceEEEeeCCCHHHHHHHHHHhC
Confidence 46899998 7888877775411 22589999887643220 00000 01123556777765432 2211
Q ss_pred -ccceEEEcc
Q 030736 161 -FGDQLLGAS 169 (172)
Q Consensus 161 -sfDlVvS~~ 169 (172)
.+|.|+++.
T Consensus 135 ~~~D~Vi~~a 144 (390)
T PLN02657 135 DPVDVVVSCL 144 (390)
T ss_pred CCCcEEEECC
Confidence 589999865
No 479
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.67 E-value=1.8e+02 Score=23.73 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=26.7
Q ss_pred CeEEEEcCC--CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 93 PTALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 93 ~~vLDlGcG--tG~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
.+|.-+|+| .+.++..++..+ .+|+++|.+++.++.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~ 43 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGL 43 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHH
Confidence 457778887 345556666544 48999999999987543
No 480
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.66 E-value=93 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred CeEEEEcCCCcH----HHHHHhhcCCCcEEEEEeCCHH
Q 030736 93 PTALCLGGSLEA----VRRLLRGRGGIEKLIMMDTSYD 126 (172)
Q Consensus 93 ~~vLDlGcGtG~----l~~~L~~~~~~~~v~~vD~S~~ 126 (172)
..++-.|+|||- +++.|.++.+.-+++++|+...
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S 207 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCC
Confidence 568889999995 5677777766679999999753
No 481
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=24.39 E-value=1.9e+02 Score=24.32 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCcHHHH---HHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSLEAVRR---LLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~---~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-.|+ |.++. .+++.....+|+++|.+++-++.+++
T Consensus 187 ~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 187 KGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4578888875 44443 34443334479999999998888764
No 482
>PRK06153 hypothetical protein; Provisional
Probab=24.25 E-value=1.1e+02 Score=27.17 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=24.0
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+|+-+|||. | .++..|++. ++++++.+|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CCCEEEEECCC
Confidence 6799999974 4 456777765 57899999976
No 483
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=24.17 E-value=1.1e+02 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=23.2
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+|+=+|||. +.++..|+.. .+++++.+|.+
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D 54 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDD 54 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 6799999994 3556777664 47899999765
No 484
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=24.17 E-value=1.9e+02 Score=19.89 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCcHH-HHHHhhc---C-C-CcEEEEEeCCHHHHHHH
Q 030736 92 FPTALCLGGSLEAV-RRLLRGR---G-G-IEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 92 ~~~vLDlGcGtG~l-~~~L~~~---~-~-~~~v~~vD~S~~mL~~a 131 (172)
.-+||=+|||.... ..-+... . . .-+++..|.+++.+.+.
T Consensus 24 ~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARn 69 (100)
T PF14737_consen 24 DLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARN 69 (100)
T ss_pred CceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHH
Confidence 45799999999853 3333321 1 1 35899999999988775
No 485
>PRK07454 short chain dehydrogenase; Provisional
Probab=24.14 E-value=3.4e+02 Score=20.91 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030736 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~---- 158 (172)
..++|-.|+ +|.++..+. +++ .+|+.++.+++-+....+... .....+.++.+|..+.. +.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAG--WDLALVARSQDALEALAAELR---STGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 357888885 555555554 433 589999998865544332211 12224556777765432 11
Q ss_pred -CCccceEEEcc
Q 030736 159 -ERFGDQLLGAS 169 (172)
Q Consensus 159 -~~sfDlVvS~~ 169 (172)
-+..|.|+.+.
T Consensus 80 ~~~~id~lv~~a 91 (241)
T PRK07454 80 QFGCPDVLINNA 91 (241)
T ss_pred HcCCCCEEEECC
Confidence 13578888764
No 486
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=23.94 E-value=1.1e+02 Score=22.15 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEcCC-Cc-HHHHHHhhcCCCcEEEEEeCC
Q 030736 94 TALCLGGS-LE-AVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 94 ~vLDlGcG-tG-~l~~~L~~~~~~~~v~~vD~S 124 (172)
+||=+||| .| .++..|... .+++++.+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 47889997 33 355666654 46789999976
No 487
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=23.31 E-value=1.8e+02 Score=24.32 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.8
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCC
Q 030736 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTS 124 (172)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~~vD~S 124 (172)
.+|+=+|||. +.++..|+.. .+++++.+|.+
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D 63 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALART-GIGAITLIDMD 63 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 6799999993 3556777764 47899999977
No 488
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=23.30 E-value=2.2e+02 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~ 132 (172)
+..+||-.|+|+ |..+..++.......+++++.+++..+...
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 456888888655 555555555434445999999988877664
No 489
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=23.07 E-value=1.9e+02 Score=26.93 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CC--CCccce
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK--ERFGDQ 164 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~---~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp--f~--~~sfDl 164 (172)
.++||-.| |+|+++.+|.+.. ...+|+++|..+....... ....+.++.+|..+.. +. -..+|.
T Consensus 315 ~~~VLVTG-atGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~--------~~~~~~~~~gDl~d~~~~l~~~l~~~D~ 385 (660)
T PRK08125 315 RTRVLILG-VNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFL--------GHPRFHFVEGDISIHSEWIEYHIKKCDV 385 (660)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhc--------CCCceEEEeccccCcHHHHHHHhcCCCE
Confidence 46899998 8999999887522 1248999998764332210 1123666777765321 11 135788
Q ss_pred EEEc
Q 030736 165 LLGA 168 (172)
Q Consensus 165 VvS~ 168 (172)
|+-.
T Consensus 386 ViHl 389 (660)
T PRK08125 386 VLPL 389 (660)
T ss_pred EEEC
Confidence 8753
No 490
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=23.01 E-value=1.8e+02 Score=24.47 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhh---cCCCcEEEEEeCCHHHHH
Q 030736 91 TFPTALCLGGSLEAVRRLLRG---RGGIEKLIMMDTSYDMLK 129 (172)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~---~~~~~~v~~vD~S~~mL~ 129 (172)
+..+|+-+|+| .++..+.. .....+|+.+|.+++-..
T Consensus 177 ~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311)
T cd05213 177 KGKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERAE 216 (311)
T ss_pred cCCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 45789999885 55544432 123468999999986543
No 491
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=22.90 E-value=3.8e+02 Score=21.09 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=40.3
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030736 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (172)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f~-----~ 159 (172)
.++|-.|++.| .++..|.+.+ .+|+.++.+++-++...+... ..+..+.++.+|..+.. +. -
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAG--ATIVFNDINQELVDKGLAAYR---ELGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 57888887765 2344455543 578888988876655433211 12223445566654321 00 1
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
+.+|.||.+.
T Consensus 86 ~~id~li~~a 95 (265)
T PRK07097 86 GVIDILVNNA 95 (265)
T ss_pred CCCCEEEECC
Confidence 4578888764
No 492
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=22.75 E-value=1.5e+02 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 105 VRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 105 l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+++.|.+.+...+|+++|.++..+..+.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 46778777666799999999999999864
No 493
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=22.72 E-value=4e+02 Score=24.96 Aligned_cols=77 Identities=9% Similarity=-0.180 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhh-----c-cCCCceeEEEccCCCCC-CC--CC
Q 030736 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDA-----H-NDNIETCFVVGDEEFLP-LK--ER 160 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~~vD~S~~mL~~a~~~~~~~-----~-~~~~~~~~~~~D~e~Lp-f~--~~ 160 (172)
..+||-+|+ +|.++..+.+.. ...+|++++.+++-+....+..... . .....+.++.+|..+.. +. -+
T Consensus 80 gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 80 EDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 457888884 566666654311 2258999998877655432211000 0 00113566778776532 11 14
Q ss_pred ccceEEEcc
Q 030736 161 FGDQLLGAS 169 (172)
Q Consensus 161 sfDlVvS~~ 169 (172)
..|+||++.
T Consensus 159 giDiVVn~A 167 (576)
T PLN03209 159 NASVVICCI 167 (576)
T ss_pred CCCEEEEcc
Confidence 589999875
No 494
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=22.69 E-value=2.3e+02 Score=23.36 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030736 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (172)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~~vD~S~~mL~~a~~ 133 (172)
+..+||-+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 467888887642 2233334443334459999999988888754
No 495
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.66 E-value=3.5e+02 Score=20.64 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHH
Q 030736 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLC 131 (172)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a 131 (172)
..+||-.|++ |.++..+ .+.+ .+|++++.+++-+...
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G--~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEG--AQVCINSRNENKLKRM 45 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 3579999975 4444444 3433 5899999998766544
No 496
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.61 E-value=3.7e+02 Score=20.84 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=39.8
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
.++|-.|+ +|.++..+ .+.+ .+|+.++.+++.++...+... ..+..+.++.+|..+.. + .
T Consensus 8 ~~vlItGa-sg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 8 KTAVVTGA-ASGIGKEIALELARAG--AAVAIADLNQDGANAVADEIN---KAGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHH---hcCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57887775 44555444 4433 479999999876665543221 12224555667655432 0 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
.+..|.||.+.
T Consensus 82 ~~~~d~vi~~a 92 (262)
T PRK13394 82 FGSVDILVSNA 92 (262)
T ss_pred cCCCCEEEECC
Confidence 13478877764
No 497
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.60 E-value=1.3e+02 Score=20.75 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=11.5
Q ss_pred CeEEEEcCCCcHHHHHHhh
Q 030736 93 PTALCLGGSLEAVRRLLRG 111 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~ 111 (172)
.+|| +-||+|.-+..+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~ 21 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN 21 (95)
T ss_pred cEEE-EECCCchhHHHHHH
Confidence 3566 55999976665543
No 498
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.45 E-value=2.3e+02 Score=18.47 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=6.7
Q ss_pred CccceEEEcc
Q 030736 160 RFGDQLLGAS 169 (172)
Q Consensus 160 ~sfDlVvS~~ 169 (172)
..+|+|+|+.
T Consensus 44 ~~~DlIisT~ 53 (86)
T cd05563 44 SSADIIVTSK 53 (86)
T ss_pred CCCCEEEEch
Confidence 4677777753
No 499
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=22.44 E-value=3.9e+02 Score=21.02 Aligned_cols=74 Identities=9% Similarity=-0.026 Sum_probs=36.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEe-CCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----
Q 030736 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMD-TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (172)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~~vD-~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f----- 157 (172)
..++|-.|++.| .++..|.+.+ .+|+.+. .+++-++...+.... ..+..+.++..|..+.. +
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSG--VNIAFTYNSNVEEANKIAEDLEQ--KYGIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357888887666 2444455543 4677764 344444332211110 11234555666655421 0
Q ss_pred CCCccceEEEcc
Q 030736 158 KERFGDQLLGAS 169 (172)
Q Consensus 158 ~~~sfDlVvS~~ 169 (172)
.-+.+|+++.|.
T Consensus 84 ~~g~id~lv~nA 95 (260)
T PRK08416 84 DFDRVDFFISNA 95 (260)
T ss_pred hcCCccEEEECc
Confidence 114578888764
No 500
>PRK08643 acetoin reductase; Validated
Probab=22.39 E-value=3.8e+02 Score=20.85 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=37.7
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030736 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (172)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~~vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~Lp-----f-----~ 158 (172)
.++|-.|+..| ++..+ .+.+ .+|+.+|.+++.++....... ..+..+.++.+|..+.. + .
T Consensus 3 k~~lItGas~g-iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLVEDG--FKVAIVDYNEETAQAAADKLS---KDGGKAIAVKADVSDRDQVFAAVRQVVDT 76 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46777775544 44444 4433 578889988776655433221 11223445566654431 1 0
Q ss_pred CCccceEEEcc
Q 030736 159 ERFGDQLLGAS 169 (172)
Q Consensus 159 ~~sfDlVvS~~ 169 (172)
-+..|.||.+.
T Consensus 77 ~~~id~vi~~a 87 (256)
T PRK08643 77 FGDLNVVVNNA 87 (256)
T ss_pred cCCCCEEEECC
Confidence 13578777664
Done!