BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030739
MAFTSIYDLLADISFTFSVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKE
IECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDT
VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE

High Scoring Gene Products

Symbol, full name Information P value
OTLD1
otubain-like deubiquitinase 1 		protein from Arabidopsis thaliana 1.6e-30

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030739
        (172 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2039642 - symbol:OTLD1 "otubain-like deubiquit...   338  1.6e-30   1


>TAIR|locus:2039642 [details] [associations]
            symbol:OTLD1 "otubain-like deubiquitinase 1" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008234 "cysteine-type peptidase activity" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0016578 "histone
            deubiquitination" evidence=IDA] [GO:0031491 "nucleosome binding"
            evidence=IDA] [GO:0042393 "histone binding" evidence=IDA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEP] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] Pfam:PF02338
            GO:GO:0045892 EMBL:CP002685 GO:GO:0006508 InterPro:IPR015940
            PROSITE:PS50030 GO:GO:0008233 GO:GO:0042393 InterPro:IPR003323
            PROSITE:PS50802 GO:GO:0031491 GO:GO:0016578 MEROPS:C85.001
            KO:K12655 EMBL:JQ013451 IPI:IPI00546983 RefSeq:NP_001189616.1
            RefSeq:NP_973544.1 RefSeq:NP_973545.2 RefSeq:NP_973546.2
            UniGene:At.13637 SMR:F4IFS7 EnsemblPlants:AT2G27350.3
            EnsemblPlants:AT2G27350.4 EnsemblPlants:AT2G27350.5
            EnsemblPlants:AT2G27350.6 GeneID:817278 KEGG:ath:AT2G27350
            OMA:MAEDGNC Uniprot:F4IFS7
        Length = 506

 Score = 338 (124.0 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 81/135 (60%), Positives = 93/135 (68%)

Query:    42 NALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKXXXXXXXXXXXXXXR 101
             NALLAEGRFYSDLELTEKEIE  VME SRAEYL  +  K ++G K               
Sbjct:   377 NALLAEGRFYSDLELTEKEIERSVMEASRAEYLM-EWSKPRIGPKESSTSNAETSSSGAT 435

Query:   102 S-SCSETK-LEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159
               S S++K  E  K      TVLS+S++MVLSMGFSY Q +EAYSIFGDDVDSMVCY+LE
Sbjct:   436 GPSGSDSKPAEAVK----EKTVLSSSIEMVLSMGFSYAQAMEAYSIFGDDVDSMVCYVLE 491

Query:   160 T--GSSSRRKGKATE 172
             T  G ++RRKGKATE
Sbjct:   492 TSCGGNNRRKGKATE 506


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       139   0.00091  102 3  11 22  0.44    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  505 (54 KB)
  Total size of DFA:  110 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.77u 0.23s 11.00t   Elapsed:  00:00:01
  Total cpu time:  10.77u 0.23s 11.00t   Elapsed:  00:00:01
  Start:  Thu May  9 18:37:11 2013   End:  Thu May  9 18:37:12 2013

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