BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030739
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BED|A Chain A, MannoseSORBOSE SPECIFIC IIA SUBUNIT OF PHOSPHOTRANSFERASE
           SYSTEM FROM Enterococcus Faecalis
 pdb|3BED|B Chain B, MannoseSORBOSE SPECIFIC IIA SUBUNIT OF PHOSPHOTRANSFERASE
           SYSTEM FROM Enterococcus Faecalis
          Length = 142

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 109 LEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSS 164
           L GG  C ++        Q+ +  G +    IEA     ++VD +  YL + G S+
Sbjct: 70  LXGGTPCNVAXXAXGTYPQLRVVAGLNLAXAIEAAVSPVENVDELAAYLTQIGQSA 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,490,380
Number of Sequences: 62578
Number of extensions: 93486
Number of successful extensions: 170
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 2
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)