BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030739
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 76 GDNL-KQQLGHKESSTSGAEPSSSGA--RSSCSETKL 109
G N+ K++ GH ESST G EPS SG +SSC+ ++L
Sbjct: 341 GSNMDKKEDGHSESSTCGEEPSISGTPEKSSCTLSQL 377
>sp|Q748X2|LEU3_GEOSL 3-isopropylmalate dehydrogenase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=leuB PE=3 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 51 YSDLELTEKEIECMVMEVSRA---------EYLAGDNLKQQLGHKESSTSGAEPSSSGAR 101
Y D+EL+ ++ M++ R E + GD L + S G PS+S A
Sbjct: 216 YPDVELSHMYVDNAAMQLVRWPKQFDVILCENMFGDILSDEAAMLTGSL-GMLPSASLAE 274
Query: 102 SSCSETKLEGGKGCELSDTVLSNSMQMVLSMG----FSYLQVIEAYSIFGDDVDSMVCYL 157
+ + GG +++ ++N + +LSMG FS+ V A D +D+ V +
Sbjct: 275 GTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLKFSFGMVDAA-----DAIDNAVATV 329
Query: 158 LETGSSSR 165
L+ G +R
Sbjct: 330 LDQGFRTR 337
>sp|Q39Y29|LEU3_GEOMG 3-isopropylmalate dehydrogenase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=leuB PE=3 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 51 YSDLELTEKEIECMVMEVSRA---------EYLAGDNLKQQLGHKESSTSGAEPSSSGAR 101
Y D+EL+ ++ M++ R E + GD L + S G PS+S A
Sbjct: 216 YPDVELSHMYVDNAAMQLVRWPKQFDVILCENMFGDILSDEAAMLTGSL-GMLPSASLAE 274
Query: 102 SSCSETKLEGGKGCELSDTVLSNSMQMVLSMG----FSYLQVIEAYSIFGDDVDSMVCYL 157
+ + GG +++ ++N + +LSMG FS+ V A D +D+ V +
Sbjct: 275 GTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLRFSFGMVDAA-----DAIDNAVAKV 329
Query: 158 LETGSSSR 165
L+ G +R
Sbjct: 330 LDQGCRTR 337
>sp|Q0A7K4|ENO_ALHEH Enolase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=eno PE=3
SV=1
Length = 429
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 33 KAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNL 79
K QD+ ++ + EG F DL E +E ++ + RA Y AG+N+
Sbjct: 191 KVLQDRGLNTGVGDEGGFAPDLPSNEAALEVILEAIDRAGYKAGENV 237
>sp|Q9J504|V231_FOWPN Putative ankyrin repeat protein FPV231 OS=Fowlpox virus (strain
NVSL) GN=FPV231 PE=4 SV=1
Length = 256
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 51 YSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHK 86
Y D+ + K IE +V + + EY+A D++K QLG+K
Sbjct: 164 YIDI-IDNKNIEVIVSQFTILEYIAPDDIKNQLGYK 198
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 48 GRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSET 107
G Y + + EK+I+ + + YL + + Q+ +E S + + A+ E
Sbjct: 60 GILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWK--EALAKQDTQEA 117
Query: 108 KLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS 163
+ + +LS ++ +S +++ MG Y IEAY + ++ YL+E G +
Sbjct: 118 RKYAMRSSKLSPYIIESSKKLLTMMGIPY---IEAYG----EGEAQAAYLVENGDA 166
>sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA
PE=3 SV=1
Length = 800
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 135 SYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGK 169
SY+Q Y IFG++ DS VC +TG S + GK
Sbjct: 580 SYVQQALDYHIFGENKDSKVCPSCKTGELSLKLGK 614
>sp|Q9ZDK2|TOP1_RICPR DNA topoisomerase 1 OS=Rickettsia prowazekii (strain Madrid E)
GN=topA PE=3 SV=1
Length = 776
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 135 SYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGK 169
+YLQ Y +FG+D +S VC +TG S + GK
Sbjct: 580 NYLQKALDYHLFGEDKESKVCPSCKTGQLSLKLGK 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,501,538
Number of Sequences: 539616
Number of extensions: 1996219
Number of successful extensions: 5752
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5733
Number of HSP's gapped (non-prelim): 45
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)