Query 030739
Match_columns 172
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 03:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00194 UBA Ubiquitin Associat 96.5 0.0025 5.3E-08 38.1 2.5 37 123-159 2-38 (38)
2 PF00627 UBA: UBA/TS-N domain; 95.9 0.0077 1.7E-07 36.7 2.7 34 124-157 4-37 (37)
3 smart00165 UBA Ubiquitin assoc 95.2 0.018 3.9E-07 34.3 2.4 35 124-158 3-37 (37)
4 PF09312 SurA_N: SurA N-termin 64.0 7 0.00015 28.6 2.6 49 37-85 48-96 (118)
5 COG1327 Predicted transcriptio 50.9 38 0.00082 28.2 5.0 44 18-70 74-117 (156)
6 TIGR00244 transcriptional regu 49.5 45 0.00097 27.2 5.2 44 19-71 75-118 (147)
7 COG4224 Uncharacterized protei 43.0 19 0.00041 27.1 2.0 25 55-83 20-44 (77)
8 PRK03002 prsA peptidylprolyl i 42.6 48 0.001 27.7 4.5 45 18-67 33-82 (285)
9 PRK03095 prsA peptidylprolyl i 39.8 57 0.0012 27.3 4.5 45 17-66 29-78 (287)
10 TIGR03142 cytochro_ccmI cytoch 39.7 81 0.0018 23.3 4.9 46 22-68 30-76 (117)
11 PRK09772 transcriptional antit 37.4 17 0.00037 29.9 1.1 25 8-32 26-50 (278)
12 TIGR00601 rad23 UV excision re 33.7 83 0.0018 28.4 4.9 41 119-159 153-193 (378)
13 PF05979 DUF896: Bacterial pro 33.0 44 0.00095 24.0 2.4 28 54-83 17-46 (65)
14 PF08451 A_deaminase_N: Adenos 31.7 97 0.0021 22.9 4.2 29 48-76 37-67 (96)
15 PRK02998 prsA peptidylprolyl i 29.8 1.2E+02 0.0025 25.4 4.8 50 19-68 32-81 (283)
16 PF09802 Sec66: Preprotein tra 29.8 1.4E+02 0.0031 25.1 5.3 38 32-69 90-135 (190)
17 KOG0100 Molecular chaperones G 29.5 30 0.00065 33.8 1.5 15 54-68 538-552 (663)
18 PF10360 DUF2433: Protein of u 29.5 46 0.00099 26.7 2.3 20 25-44 36-57 (132)
19 TIGR02933 nifM_nitrog nitrogen 28.7 1.3E+02 0.0027 24.8 4.8 30 20-54 49-78 (256)
20 TIGR01639 P_fal_TIGR01639 Plas 27.8 36 0.00079 23.1 1.3 15 51-65 3-19 (61)
21 PHA02571 a-gt.4 hypothetical p 27.1 67 0.0015 25.4 2.8 46 24-71 61-106 (109)
22 PRK00247 putative inner membra 26.2 3.4E+02 0.0074 25.3 7.5 24 53-76 353-383 (429)
23 PRK02539 hypothetical protein; 25.7 54 0.0012 24.8 2.0 28 54-83 19-48 (85)
24 CHL00047 psbK photosystem II p 25.5 50 0.0011 23.8 1.7 25 129-153 13-37 (58)
25 KOG0795 Chorismate mutase [Ami 25.2 1.4E+02 0.003 26.7 4.7 41 22-76 171-211 (262)
26 KOG4703 Uncharacterized conser 25.1 46 0.00099 31.1 1.8 37 24-60 268-304 (431)
27 PF07852 DUF1642: Protein of u 24.9 34 0.00073 25.8 0.8 11 54-64 116-126 (138)
28 PRK00039 ruvC Holliday junctio 24.6 56 0.0012 25.8 2.0 14 21-34 116-129 (164)
29 PRK04405 prsA peptidylprolyl i 24.1 1.3E+02 0.0028 25.6 4.2 27 39-65 112-138 (298)
30 PRK01631 hypothetical protein; 24.0 62 0.0013 24.0 2.0 26 54-83 18-43 (76)
31 PRK14662 acpS 4'-phosphopantet 23.8 89 0.0019 23.6 2.9 42 23-76 10-51 (120)
32 PF08269 Cache_2: Cache domain 23.6 1.2E+02 0.0026 20.7 3.2 51 26-76 2-55 (95)
33 KOG0011 Nucleotide excision re 23.3 1.4E+02 0.0031 27.5 4.5 40 120-159 133-172 (340)
34 PRK00059 prsA peptidylprolyl i 22.4 1.4E+02 0.003 24.8 4.0 14 20-33 43-56 (336)
35 cd00529 RuvC_resolvase Hollida 21.7 71 0.0015 24.4 2.0 15 21-35 114-128 (154)
36 PF10260 SAYSvFN: Uncharacteri 21.5 38 0.00082 24.6 0.4 14 141-154 45-58 (71)
37 PF01595 DUF21: Domain of unkn 20.9 59 0.0013 24.0 1.4 27 51-77 156-182 (183)
38 PRK14660 acpS 4'-phosphopantet 20.7 1.5E+02 0.0032 22.2 3.5 42 23-76 10-51 (125)
No 1
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.49 E-value=0.0025 Score=38.12 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=33.4
Q ss_pred chhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 123 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 123 sssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
...++-|.+|||+.-++++|....+.|++.-+-||++
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 3568899999999999999999999999999988874
No 2
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.94 E-value=0.0077 Score=36.66 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=29.9
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhh
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYL 157 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYl 157 (172)
..++.|..|||++-++.+|.-..+.|||.-+-||
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 4578999999999999999999999999888776
No 3
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.23 E-value=0.018 Score=34.27 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=31.6
Q ss_pred hhhHHHHHhchhHHHHHHHhhhhccCccchhhhhh
Q 030739 124 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL 158 (172)
Q Consensus 124 ssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYll 158 (172)
..++.|.+|||+.-++.+|...-+.|++.-+-||+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 46789999999999999999999999998888774
No 4
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=64.01 E-value=7 Score=28.56 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccccccchHhhHHHHHHHHHHHHHHhhhhcCchhhhccc
Q 030739 37 DQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGH 85 (172)
Q Consensus 37 dqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRAEYla~~~fk~ql~~ 85 (172)
++.|++.|+..----.-+..|+.||++.+-.-.+...+..+.|+++|..
T Consensus 48 d~LI~e~L~~q~ak~~gI~vsd~evd~~i~~ia~~n~ls~~ql~~~L~~ 96 (118)
T PF09312_consen 48 DQLIDEKLQLQEAKRLGIKVSDEEVDEAIANIAKQNNLSVEQLRQQLEQ 96 (118)
T ss_dssp HHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6677777666554456688899999999998888888888888888754
No 5
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=50.89 E-value=38 Score=28.16 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=34.7
Q ss_pred ccCCccCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHH
Q 030739 18 SVQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSR 70 (172)
Q Consensus 18 ~~~~~vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSR 70 (172)
+..+.|+.+||+.||. .|+..|...|. -|..-++|-+|||+.-+
T Consensus 74 ~~KRpVs~e~ie~~v~-----~ie~~Lr~~g~----~EV~S~~IG~~VM~~Lk 117 (156)
T COG1327 74 CEKRPVSSEQIEEAVS-----HIERQLRSSGE----REVPSKEIGELVMEELK 117 (156)
T ss_pred HhcCCCCHHHHHHHHH-----HHHHHHHhcCC----CCCCHHHHHHHHHHHHH
Confidence 4567899999999985 57777777775 36777899999998755
No 6
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=49.52 E-value=45 Score=27.25 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=31.3
Q ss_pred cCCccCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHHH
Q 030739 19 VQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRA 71 (172)
Q Consensus 19 ~~~~vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRA 71 (172)
+.+.|+.+||++.+ ++|++.|...| +-|.+-.+|=+|||+.-+.
T Consensus 75 ~KRpVs~e~ie~~v-----~~Ie~~l~~~~----~~EI~S~~IGe~Vm~~L~~ 118 (147)
T TIGR00244 75 EKRPVSFDDLEHAI-----NHIEAQLRAQG----EREVPSELIGQMVMQYLKK 118 (147)
T ss_pred cCCCCCHHHHHHHH-----HHHHHHHHHcC----CCcccHHHHHHHHHHHHhh
Confidence 34556666666665 45677777665 4688999999999987653
No 7
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.99 E-value=19 Score=27.06 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=19.3
Q ss_pred HhhHHHHHHHHHHHHHHhhhhcCchhhhc
Q 030739 55 ELTEKEIECMVMEVSRAEYLAGDNLKQQL 83 (172)
Q Consensus 55 elTE~EIE~~VmeaSRAEYla~~~fk~ql 83 (172)
-|||.|++++ ++-|.|||.. ||.+.
T Consensus 20 gLTeeEk~eQ--~~LR~eYl~~--fr~~v 44 (77)
T COG4224 20 GLTEEEKKEQ--AKLRREYLES--FRGQV 44 (77)
T ss_pred CCCHHHHHHH--HHHHHHHHHH--HHHHH
Confidence 4799999987 6889999986 44443
No 8
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=42.61 E-value=48 Score=27.72 Aligned_cols=45 Identities=7% Similarity=0.300 Sum_probs=29.6
Q ss_pred ccCCccCHHHHHHHHHHhH-----HHHHHHHHHhccccccchHhhHHHHHHHHHH
Q 030739 18 SVQTNVDKDQVKAAIKAQQ-----DQQIDNALLAEGRFYSDLELTEKEIECMVME 67 (172)
Q Consensus 18 ~~~~~vDk~qvkaAIKaqq-----dqqi~~aLlaEgrfySDlelTE~EIE~~Vme 67 (172)
.-|..+.++++...+|.+. ++.|.+.++.. .++.|+.||+..+-.
T Consensus 33 vng~~It~~~~~~~l~~~~g~~~l~~li~~~~~~~-----~i~vsd~evd~~i~~ 82 (285)
T PRK03002 33 ATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITK-----KYKVSDDDVDKEVQK 82 (285)
T ss_pred ECCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHH
Confidence 3456788888888888754 34455555554 457777777776544
No 9
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=39.81 E-value=57 Score=27.29 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=29.7
Q ss_pred CccCCccCHHHHHHHHHHhHH-----HHHHHHHHhccccccchHhhHHHHHHHHH
Q 030739 17 FSVQTNVDKDQVKAAIKAQQD-----QQIDNALLAEGRFYSDLELTEKEIECMVM 66 (172)
Q Consensus 17 ~~~~~~vDk~qvkaAIKaqqd-----qqi~~aLlaEgrfySDlelTE~EIE~~Vm 66 (172)
...++.+.++++...+|.+-- +.|.+.|++.+ ++.|+.||+..+-
T Consensus 29 ~~~~~~IT~~e~~~~~k~~~~~~~L~~~I~~~l~~~~-----i~vs~~evd~~i~ 78 (287)
T PRK03095 29 TSKAGDITKDEFYEQMKTQAGKQVLNNMVMEKVLIKN-----YKVEDKEVDKKYD 78 (287)
T ss_pred EecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Confidence 345677888888888877653 44555565554 5677777776543
No 10
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=39.69 E-value=81 Score=23.31 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHhHHHHHHHHHHhcccc-ccchHhhHHHHHHHHHHH
Q 030739 22 NVDKDQVKAAIKAQQDQQIDNALLAEGRF-YSDLELTEKEIECMVMEV 68 (172)
Q Consensus 22 ~vDk~qvkaAIKaqqdqqi~~aLlaEgrf-ySDlelTE~EIE~~Vmea 68 (172)
.+|+++.+.+|=.+|-..+|+. +++|+. ..+.+....||+|-.++.
T Consensus 30 ~~~~~~~n~~iyr~qL~ELe~d-~~~G~l~~~e~~~~~~El~rrLL~d 76 (117)
T TIGR03142 30 TVDRDELNLAVYRDRLAELERD-LAEGLLDEAEAEAARAELQRRLLAD 76 (117)
T ss_pred cccHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHC
Confidence 4789999999999998888886 456654 334556666666666554
No 11
>PRK09772 transcriptional antiterminator BglG; Provisional
Probab=37.44 E-value=17 Score=29.92 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=21.9
Q ss_pred ccccccccCCccCCccCHHHHHHHH
Q 030739 8 DLLADISFTFSVQTNVDKDQVKAAI 32 (172)
Q Consensus 8 svGaGLGF~~~~~~~vDk~qvkaAI 32 (172)
-+|-|+||..-.|-.+|.++|++--
T Consensus 26 ~~GkGigF~kk~g~~i~~~~iek~f 50 (278)
T PRK09772 26 VMGRGIGFQKRAGERINSSGIEKEY 50 (278)
T ss_pred EEecccccCCCCCCccChHHhceEE
Confidence 4799999999999999999988754
No 12
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.73 E-value=83 Score=28.40 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 119 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 119 ~~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
+..+...++-+.+|||.==||.-|--.==.+-|.-|-||+-
T Consensus 153 g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~t 193 (378)
T TIGR00601 153 GSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLT 193 (378)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 33456689999999999999998876666788999999974
No 13
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=33.03 E-value=44 Score=23.96 Aligned_cols=28 Identities=39% Similarity=0.439 Sum_probs=17.3
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhc--Cchhhhc
Q 030739 54 LELTEKEIECMVMEVSRAEYLAG--DNLKQQL 83 (172)
Q Consensus 54 lelTE~EIE~~VmeaSRAEYla~--~~fk~ql 83 (172)
-.||+.|.++. ++-|.|||+. ..|+.||
T Consensus 17 ~gLT~eE~~Eq--~~LR~eYl~~fR~~~~~~L 46 (65)
T PF05979_consen 17 EGLTEEEKAEQ--AELRQEYLQNFRGNFRSQL 46 (65)
T ss_dssp T---HHHHHHH--HHHHHHHHHTTHHHHHHCS
T ss_pred CCCCHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 35788888775 5779999986 2344444
No 14
>PF08451 A_deaminase_N: Adenosine/AMP deaminase N-terminal; InterPro: IPR013659 This domain is found to the N terminus of the Adenosine/AMP deaminase domain (IPR001365 from INTERPRO) in metazoan proteins such as the Cat eye syndrome critical region protein 1 and its homologues. ; GO: 0005615 extracellular space; PDB: 3LGG_B 3LGD_B.
Probab=31.67 E-value=97 Score=22.92 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=20.2
Q ss_pred cccccchHhhHHHHH--HHHHHHHHHhhhhc
Q 030739 48 GRFYSDLELTEKEIE--CMVMEVSRAEYLAG 76 (172)
Q Consensus 48 grfySDlelTE~EIE--~~VmeaSRAEYla~ 76 (172)
-++-+|+.||++|++ +.+|..-+.|+-..
T Consensus 37 ~~lG~~l~Lt~~E~~aN~~lm~lK~~El~~g 67 (96)
T PF08451_consen 37 RRLGGDLVLTPKEQKANEILMALKKEELDEG 67 (96)
T ss_dssp HSTTTT----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999875 78899888888655
No 15
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=29.82 E-value=1.2e+02 Score=25.42 Aligned_cols=50 Identities=8% Similarity=0.182 Sum_probs=31.8
Q ss_pred cCCccCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHH
Q 030739 19 VQTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEV 68 (172)
Q Consensus 19 ~~~~vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~Vmea 68 (172)
.++.+.++++-.++|.+.-+|+=+.|+-.-.+...++.|++||+..+-..
T Consensus 32 ~~g~it~~e~~~~~~~~~g~~~l~~li~~k~~~~~i~vsd~ev~~~i~~~ 81 (283)
T PRK02998 32 KVGNITEKELSKELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEEA 81 (283)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45688999999999887544332222222222234688999998876554
No 16
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=29.82 E-value=1.4e+02 Score=25.07 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHHHhccccccch--------HhhHHHHHHHHHHHH
Q 030739 32 IKAQQDQQIDNALLAEGRFYSDL--------ELTEKEIECMVMEVS 69 (172)
Q Consensus 32 IKaqqdqqi~~aLlaEgrfySDl--------elTE~EIE~~VmeaS 69 (172)
||-+++.+.-+.|+..|..-.|+ ++-|.||.+.|+||-
T Consensus 90 ~klre~k~~l~~L~q~GsIGDd~wqrf~~aeKe~E~El~eVv~EAn 135 (190)
T PF09802_consen 90 IKLREDKPALNKLYQNGSIGDDLWQRFQRAEKEMEEELKEVVQEAN 135 (190)
T ss_pred HHHHhhhHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778899999877765 567778888888874
No 17
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.48 E-value=30 Score=33.76 Aligned_cols=15 Identities=47% Similarity=0.457 Sum_probs=13.2
Q ss_pred hHhhHHHHHHHHHHH
Q 030739 54 LELTEKEIECMVMEV 68 (172)
Q Consensus 54 lelTE~EIE~~Vmea 68 (172)
-+||+.||||||-+|
T Consensus 538 ~rLt~EdIerMv~eA 552 (663)
T KOG0100|consen 538 GRLTPEDIERMVNEA 552 (663)
T ss_pred CCCCHHHHHHHHHHH
Confidence 368999999999886
No 18
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=29.47 E-value=46 Score=26.68 Aligned_cols=20 Identities=45% Similarity=0.596 Sum_probs=10.2
Q ss_pred HHHHHHHHHHh--HHHHHHHHH
Q 030739 25 KDQVKAAIKAQ--QDQQIDNAL 44 (172)
Q Consensus 25 k~qvkaAIKaq--qdqqi~~aL 44 (172)
|.||+++|-.. |-++|++||
T Consensus 36 K~~ve~~i~~~~~q~~LL~~AL 57 (132)
T PF10360_consen 36 KGQVEEAIDPNEAQRNLLENAL 57 (132)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 45555555544 445555543
No 19
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=28.66 E-value=1.3e+02 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=19.2
Q ss_pred CCccCHHHHHHHHHHhHHHHHHHHHHhccccccch
Q 030739 20 QTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDL 54 (172)
Q Consensus 20 ~~~vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDl 54 (172)
|-.||.++|.+| .+|+..+|-+.|.=|.++
T Consensus 49 gi~v~~~ev~~~-----~e~~~~~L~~~G~~~~~~ 78 (256)
T TIGR02933 49 GVVIPPSLLEEA-----PQALAQALDEQALDAAER 78 (256)
T ss_pred CCCCCHHHHHHH-----HHHHHHHHHHcCCCHHHH
Confidence 447888888877 345666666666655454
No 20
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=27.78 E-value=36 Score=23.13 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=11.7
Q ss_pred ccch--HhhHHHHHHHH
Q 030739 51 YSDL--ELTEKEIECMV 65 (172)
Q Consensus 51 ySDl--elTE~EIE~~V 65 (172)
|+|+ .|||.||.+++
T Consensus 3 ~~Dls~~lTeEEl~~~i 19 (61)
T TIGR01639 3 YNDLSKKLSKEELNELI 19 (61)
T ss_pred hhHHhHHccHHHHHHHH
Confidence 5665 68999998876
No 21
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=27.08 E-value=67 Score=25.39 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHHH
Q 030739 24 DKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRA 71 (172)
Q Consensus 24 Dk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRA 71 (172)
.|+|-+=||++..+ |..|=+.+-..-+=|+=|-+.|..||+.+|++
T Consensus 61 Nk~~Y~YAI~KLR~--i~kQp~~de~i~tmW~TSrqqi~di~~~~s~~ 106 (109)
T PHA02571 61 NKEQYVYAIKKLRD--IYKQPYTDELIETMWETSRQQILDMINSASKK 106 (109)
T ss_pred CHHHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58899999999765 44444556666677999999999999999875
No 22
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=26.21 E-value=3.4e+02 Score=25.33 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=16.6
Q ss_pred chHhhHHHHHH-------HHHHHHHHhhhhc
Q 030739 53 DLELTEKEIEC-------MVMEVSRAEYLAG 76 (172)
Q Consensus 53 DlelTE~EIE~-------~VmeaSRAEYla~ 76 (172)
-=+.++.||.+ .-|+.-|+.+=+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T PRK00247 353 KRRAAEREINREARQERAAAMARARARRAAV 383 (429)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34567788877 6677778887444
No 23
>PRK02539 hypothetical protein; Provisional
Probab=25.70 E-value=54 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=20.0
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhc--Cchhhhc
Q 030739 54 LELTEKEIECMVMEVSRAEYLAG--DNLKQQL 83 (172)
Q Consensus 54 lelTE~EIE~~VmeaSRAEYla~--~~fk~ql 83 (172)
-.||+.|.++. +.-|.|||+. ..|+.||
T Consensus 19 ~gLT~eEk~Eq--~~LR~eYl~~fR~~~~~~L 48 (85)
T PRK02539 19 EGLTGEEKVEQ--AKLREEYIEGYRRSVRHHI 48 (85)
T ss_pred cCCCHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 46899998876 5679999986 2344454
No 24
>CHL00047 psbK photosystem II protein K
Probab=25.54 E-value=50 Score=23.78 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=20.9
Q ss_pred HHHhchhHHHHHHHhhhhccCccch
Q 030739 129 VLSMGFSYLQVIEAYSIFGDDVDSM 153 (172)
Q Consensus 129 lLsMGFsY~qv~EAysIFgddvdsM 153 (172)
+.++.|-..+.=|||.+|..=||-|
T Consensus 13 ~~~~~~~~akLPEaya~f~PiVDvm 37 (58)
T CHL00047 13 LYSSSFFFAKLPEAYAIFNPIVDVM 37 (58)
T ss_pred HhhhHHHHHHHHHHHhhhcchHHhc
Confidence 4556677789999999999999987
No 25
>KOG0795 consensus Chorismate mutase [Amino acid transport and metabolism]
Probab=25.16 E-value=1.4e+02 Score=26.71 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=31.5
Q ss_pred ccCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHHHhhhhc
Q 030739 22 NVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAG 76 (172)
Q Consensus 22 ~vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRAEYla~ 76 (172)
..+...-++|||+|+..+|.+ .+|-.-.|++|.. |-++=+.
T Consensus 171 ~~~p~~Ye~aIkaqD~~~lm~------------~lt~~~vEe~vkk--Rv~~Ka~ 211 (262)
T KOG0795|consen 171 QANPEAYEKAIKAQDREGLMK------------LLTFEAVEEKVKK--RVEKKAE 211 (262)
T ss_pred hcCHHHHHHHHHHhhHHHHHH------------HhhHHHHHHHHHH--HHHHHHH
Confidence 467788899999999999988 4566778888876 5555444
No 26
>KOG4703 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=46 Score=31.11 Aligned_cols=37 Identities=35% Similarity=0.405 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHH
Q 030739 24 DKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKE 60 (172)
Q Consensus 24 Dk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~E 60 (172)
-|..||.||.|-.-..++|..-.--+.|.|+++.|.|
T Consensus 268 ik~kVKDAiqAiKh~il~nl~aR~ElhfE~lel~Eee 304 (431)
T KOG4703|consen 268 IKPKVKDAIQAIKHDILNNLAARCELHFEDLELNEEE 304 (431)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 5788999999999888888665566789999998754
No 27
>PF07852 DUF1642: Protein of unknown function (DUF1642); InterPro: IPR012865 This entry is represented by Bacteriophage r1t, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.91 E-value=34 Score=25.77 Aligned_cols=11 Identities=45% Similarity=0.637 Sum_probs=9.7
Q ss_pred hHhhHHHHHHH
Q 030739 54 LELTEKEIECM 64 (172)
Q Consensus 54 lelTE~EIE~~ 64 (172)
..+||+||+.|
T Consensus 116 ~~fTe~EIk~i 126 (138)
T PF07852_consen 116 YKFTEKEIKKI 126 (138)
T ss_pred hhhhHHHHHhC
Confidence 89999999874
No 28
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.57 E-value=56 Score=25.84 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=11.8
Q ss_pred CccCHHHHHHHHHH
Q 030739 21 TNVDKDQVKAAIKA 34 (172)
Q Consensus 21 ~~vDk~qvkaAIKa 34 (172)
+++||+||..+++.
T Consensus 116 G~A~K~qV~~mv~~ 129 (164)
T PRK00039 116 GRADKEQVQHMVKR 129 (164)
T ss_pred CCCCHHHHHHHHHH
Confidence 48999999998884
No 29
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=24.07 E-value=1.3e+02 Score=25.58 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=16.8
Q ss_pred HHHHHHHhccccccchHhhHHHHHHHH
Q 030739 39 QIDNALLAEGRFYSDLELTEKEIECMV 65 (172)
Q Consensus 39 qi~~aLlaEgrfySDlelTE~EIE~~V 65 (172)
||.+.++-+-..-++...||+||+...
T Consensus 112 ~ir~~~l~~~~v~~~i~Vtd~ei~~~y 138 (298)
T PRK04405 112 NLRTNLLSEAALKKLKKVTNSQLKKAW 138 (298)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 444555555555566677888887654
No 30
>PRK01631 hypothetical protein; Provisional
Probab=23.99 E-value=62 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=19.2
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhcCchhhhc
Q 030739 54 LELTEKEIECMVMEVSRAEYLAGDNLKQQL 83 (172)
Q Consensus 54 lelTE~EIE~~VmeaSRAEYla~~~fk~ql 83 (172)
-.||+.|.++. +.-|.|||+. |+.++
T Consensus 18 ~gLT~eE~~Eq--~~LR~eYl~~--fR~~~ 43 (76)
T PRK01631 18 TGLTVDEKQEQ--QMLRQNYTQT--FRGSL 43 (76)
T ss_pred cCCCHHHHHHH--HHHHHHHHHH--HHHHH
Confidence 35899988876 5679999986 55444
No 31
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=23.75 E-value=89 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHHHhhhhc
Q 030739 23 VDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAG 76 (172)
Q Consensus 23 vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRAEYla~ 76 (172)
|+-+-|+++|+...+.-+++ =+|+.|++...-...+++||+.
T Consensus 10 v~i~Ri~~~~~r~~~~Fl~R------------i~t~~E~~~~~~~~~~~~~lAg 51 (120)
T PRK14662 10 VEIARIRRVLERHGERALER------------LFHPEELAYCLAKADPAPSLAA 51 (120)
T ss_pred EEhHHHHHHHHhhhhHHHHH------------cCCHHHHHHHHhcCCcchhhhh
Confidence 77788888887655555554 3688888876545567888875
No 32
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=23.60 E-value=1.2e+02 Score=20.70 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhccccccch---HhhHHHHHHHHHHHHHHhhhhc
Q 030739 26 DQVKAAIKAQQDQQIDNALLAEGRFYSDL---ELTEKEIECMVMEVSRAEYLAG 76 (172)
Q Consensus 26 ~qvkaAIKaqqdqqi~~aLlaEgrfySDl---elTE~EIE~~VmeaSRAEYla~ 76 (172)
.++-.+.|.+-.++++.+.=-=..+|... ++|++|+.+++.++-++=.+.+
T Consensus 2 ~~~~~~~k~~l~~~v~~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~~~ 55 (95)
T PF08269_consen 2 NNLLEERKEQLKNVVESAISLIESYYAQAQAGKLSEEEAQQQAREALRALRYGG 55 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHC-STT-----TTHHHHHHHHHH--SBT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccCC
Confidence 44555555555555554433223344444 5999999999998855444333
No 33
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=23.32 E-value=1.4e+02 Score=27.52 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=29.5
Q ss_pred cccchhhHHHHHhchhHHHHHHHhhhhccCccchhhhhhh
Q 030739 120 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 159 (172)
Q Consensus 120 ~~lsssm~mlLsMGFsY~qv~EAysIFgddvdsMvcYllE 159 (172)
+.+-..++-+++||+--=+|+=|---==.+-|.-|-||+=
T Consensus 133 ~~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~ 172 (340)
T KOG0011|consen 133 SEYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLN 172 (340)
T ss_pred chhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhc
Confidence 3455778889999987777776655444677888889873
No 34
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=22.43 E-value=1.4e+02 Score=24.79 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=9.3
Q ss_pred CCccCHHHHHHHHH
Q 030739 20 QTNVDKDQVKAAIK 33 (172)
Q Consensus 20 ~~~vDk~qvkaAIK 33 (172)
+..+.++++..+++
T Consensus 43 ~~~It~~e~~~~~~ 56 (336)
T PRK00059 43 GEKITRGDLDKDPK 56 (336)
T ss_pred CEEeCHHHHHHHHH
Confidence 34567777777665
No 35
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=21.66 E-value=71 Score=24.40 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.8
Q ss_pred CccCHHHHHHHHHHh
Q 030739 21 TNVDKDQVKAAIKAQ 35 (172)
Q Consensus 21 ~~vDk~qvkaAIKaq 35 (172)
++++|+||..++|+.
T Consensus 114 G~A~KeqV~~mv~~~ 128 (154)
T cd00529 114 GKADKDQVQHMVKRL 128 (154)
T ss_pred CCCCHHHHHHHHHHH
Confidence 389999999999854
No 36
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=21.50 E-value=38 Score=24.60 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=10.9
Q ss_pred HHhhhhccCccchh
Q 030739 141 EAYSIFGDDVDSMV 154 (172)
Q Consensus 141 EAysIFgddvdsMv 154 (172)
=|||||-+|...+.
T Consensus 45 SAYSVFN~~~~~i~ 58 (71)
T PF10260_consen 45 SAYSVFNKGCERIP 58 (71)
T ss_pred cchhhhCCCccccC
Confidence 48999999877653
No 37
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=20.87 E-value=59 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.3
Q ss_pred ccchHhhHHHHHHHHHHHHHHhhhhcC
Q 030739 51 YSDLELTEKEIECMVMEVSRAEYLAGD 77 (172)
Q Consensus 51 ySDlelTE~EIE~~VmeaSRAEYla~~ 77 (172)
..|-.+||.||+.||-+..+...++++
T Consensus 156 ~~~~~~s~eel~~lv~~~~e~G~i~~~ 182 (183)
T PF01595_consen 156 EEDPAVSEEELRSLVEEGEEEGVIEEE 182 (183)
T ss_pred cccCCCCHHHHHHHHHhHHHCCCCCCC
Confidence 467789999999999998887777653
No 38
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.66 E-value=1.5e+02 Score=22.24 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=28.5
Q ss_pred cCHHHHHHHHHHhHHHHHHHHHHhccccccchHhhHHHHHHHHHHHHHHhhhhc
Q 030739 23 VDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAG 76 (172)
Q Consensus 23 vDk~qvkaAIKaqqdqqi~~aLlaEgrfySDlelTE~EIE~~VmeaSRAEYla~ 76 (172)
|+-+-+++++....+.-+++ -+|+.|++...-...+++||+.
T Consensus 10 v~i~Ri~~~~~~~~~~fl~r------------ift~~E~~~~~~~~~~~~~lAg 51 (125)
T PRK14660 10 VEVERIARSIERHGDRFLRR------------IYTPGEIAYCTSKANRAERLAA 51 (125)
T ss_pred EEcHHHHHHHHHhhhHHHHH------------hCCHHHHHHHHhcccHHHHHHH
Confidence 67777888876544444444 2688888877555567888876
Done!